Query 032413
Match_columns 141
No_of_seqs 111 out of 207
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 22:37:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032413.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032413hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i6ha1 a.118.8.5 (A:1-179) Hy 20.6 9.6 0.0007 27.0 -0.1 31 70-108 147-177 (179)
2 d1ks9a1 a.100.1.7 (A:168-291) 20.2 50 0.0037 20.6 3.7 51 50-103 42-92 (124)
3 d2gyc31 a.108.1.1 (3:2-48) Rib 15.0 34 0.0025 19.1 1.5 14 119-132 19-32 (47)
4 d1sr9a1 a.5.7.1 (A:437-491) 2- 12.3 55 0.004 18.5 1.9 21 54-74 4-24 (55)
5 d1q8ha_ g.32.1.1 (A:) Osteocal 11.0 50 0.0036 17.3 1.2 10 53-62 28-37 (37)
6 d1bgfa_ a.90.1.1 (A:) Transcri 9.5 46 0.0034 21.9 1.0 24 43-66 5-30 (124)
7 d1gjja2 a.140.1.1 (A:111-153) 8.6 60 0.0044 17.6 1.0 12 128-139 16-27 (43)
8 d1dsqa_ g.40.1.1 (A:) Nucleic 7.1 69 0.005 15.4 0.7 7 133-139 1-7 (26)
9 d1lbua2 d.65.1.1 (A:84-213) Zn 5.7 2.1E+02 0.016 18.1 3.0 18 48-66 32-49 (130)
10 d1h3oa_ a.22.1.3 (A:) TAF(II)- 5.5 61 0.0045 18.3 -0.0 26 20-45 18-45 (50)
No 1
>d2i6ha1 a.118.8.5 (A:1-179) Hypothetical protein Atu0120 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=20.56 E-value=9.6 Score=27.00 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=26.5
Q ss_pred HHHHHhhCCCCCCCCCCChhhHHhhcCCCCccccccccC
Q 032413 70 DRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFEHYLN 108 (141)
Q Consensus 70 Er~i~s~~~rlPg~l~SS~l~lDiL~Grd~~i~feD~ln 108 (141)
=++|+.+++|.| |...++||..|-+..+||.
T Consensus 147 H~~iI~rFGRfP--------hRN~~LgR~sT~eE~~~L~ 177 (179)
T d2i6ha1 147 HRDIVERFGRFP--------HRNGILLRETTPEERQYLE 177 (179)
T ss_dssp HHHHHHHHSSCG--------GGHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHcCCCC--------ccccccCCCCCHHHHHHHH
Confidence 467999999999 6777889999998888875
No 2
>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}
Probab=20.20 E-value=50 Score=20.61 Aligned_cols=51 Identities=6% Similarity=0.021 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCcchhHHHHHHHHHhhCCCCCCCCCCChhhHHhhcCCCCcccc
Q 032413 50 IKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGF 103 (141)
Q Consensus 50 ~k~~~lr~~yG~~~PlR~~MEr~i~s~~~rlPg~l~SS~l~lDiL~Grd~~i~f 103 (141)
.....+.+..|...+-.. .+..+..-....|. ..|| ...|+..||..+||+
T Consensus 42 ~E~~~va~a~g~~~~~~~-~~~~~~~~~~~~~~-~~sS-M~qD~~~gr~tEid~ 92 (124)
T d1ks9a1 42 EEVAAVIEREGHHTSAED-LRDYVMQVIDATAE-NISS-MLQDIRALRHTEIDY 92 (124)
T ss_dssp HHHHHHHHHHTCCCCHHH-HHHHHHHHHHHTTT-CCCH-HHHHHHTTCCCSGGG
T ss_pred HHHHHHHHHcCCCCcHHH-HHHHHHHHHhccCC-CCCh-HHHHHHcCCcchHHH
Confidence 344456677887776433 33333332234453 4544 668999999998875
No 3
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=14.95 E-value=34 Score=19.13 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=11.5
Q ss_pred CCcHHHHHHHhCCC
Q 032413 119 ADLHHGMEVRIGLS 132 (141)
Q Consensus 119 ~d~H~~mE~rlgi~ 132 (141)
.++=+.||.|+|.+
T Consensus 19 veLi~amEEKFGVs 32 (47)
T d2gyc31 19 VELISAMEEKFGVS 32 (47)
T ss_dssp HHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhCcc
Confidence 35678999999986
No 4
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.29 E-value=55 Score=18.53 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=17.3
Q ss_pred HHHHhhcCcchhHHHHHHHHH
Q 032413 54 ILVNTYGTAFPMKMDFDRQIL 74 (141)
Q Consensus 54 ~lr~~yG~~~PlR~~MEr~i~ 74 (141)
+|.+-||+..|=++..|-.=+
T Consensus 4 iLe~~~Gi~LPr~mq~efs~v 24 (55)
T d1sr9a1 4 IMKTDHGLSLPRRLQIEFSQV 24 (55)
T ss_dssp HHHHHHCCCCCHHHHHHHHHH
T ss_pred EeecccCCCCCHHHHHHHHHH
Confidence 577889999999999997533
No 5
>d1q8ha_ g.32.1.1 (A:) Osteocalcin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=10.99 E-value=50 Score=17.31 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=7.8
Q ss_pred HHHHHhhcCc
Q 032413 53 RILVNTYGTA 62 (141)
Q Consensus 53 ~~lr~~yG~~ 62 (141)
+.+|+.||.+
T Consensus 28 eayrrfyg~a 37 (37)
T d1q8ha_ 28 EAYRRFYGIA 37 (37)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhccC
Confidence 4788999875
No 6
>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.46 E-value=46 Score=21.94 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=16.9
Q ss_pred HHHHHH--HHHHHHHHHhhcCcchhH
Q 032413 43 AKQREE--EIKRRILVNTYGTAFPMK 66 (141)
Q Consensus 43 ~~~~q~--~~k~~~lr~~yG~~~PlR 66 (141)
|.+-|. -.-++.+..+||-++||=
T Consensus 5 W~~~qqL~~~~Leqv~~lY~~~FPiE 30 (124)
T d1bgfa_ 5 WNQVQQLEIKFLEQVDQFYDDNFPME 30 (124)
T ss_dssp HHHHHHSCGGGHHHHGGGCBTTBCHH
T ss_pred HHHHHcCChHHHHHHHHHccccCCHH
Confidence 555443 234578999999999973
No 7
>d1gjja2 a.140.1.1 (A:111-153) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.62 E-value=60 Score=17.65 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=9.3
Q ss_pred HhCCCCCCCCCC
Q 032413 128 RIGLSKGPAYPS 139 (141)
Q Consensus 128 rlgi~~~~~~~~ 139 (141)
++|+.-||+.+|
T Consensus 16 ~~G~~~GPIt~s 27 (43)
T d1gjja2 16 KYGVNPGPIVGT 27 (43)
T ss_dssp BTTCCCCCCCSS
T ss_pred HcCCCCCCcCcc
Confidence 468899998765
No 8
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=7.14 E-value=69 Score=15.40 Aligned_cols=7 Identities=57% Similarity=0.733 Sum_probs=4.9
Q ss_pred CCCCCCC
Q 032413 133 KGPAYPS 139 (141)
Q Consensus 133 ~~~~~~~ 139 (141)
|||+|-|
T Consensus 1 kgpvcfs 7 (26)
T d1dsqa_ 1 KGPVCFS 7 (26)
T ss_dssp CCCBCTT
T ss_pred CCCEEEe
Confidence 6887754
No 9
>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal catalytic domain {Streptomyces albus G [TaxId: 1962]}
Probab=5.69 E-value=2.1e+02 Score=18.11 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhcCcchhH
Q 032413 48 EEIKRRILVNTYGTAFPMK 66 (141)
Q Consensus 48 ~~~k~~~lr~~yG~~~PlR 66 (141)
...+++.+|..|| ..|++
T Consensus 32 ~~~~L~~lR~~~G-~~Pi~ 49 (130)
T d1lbua2 32 TMWKLQAMRHAMG-DKPIT 49 (130)
T ss_dssp HHHHHHHHHHHTT-SCCCC
T ss_pred HHHHHHHHHHHhC-CCcEE
Confidence 3457999999999 45765
No 10
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.52 E-value=61 Score=18.27 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=19.1
Q ss_pred ccCCcccccccc--CCCchHHHHHhHHH
Q 032413 20 RFDIHGVKSDIV--GSHPLETLCQSAKQ 45 (141)
Q Consensus 20 R~G~~~~~~~l~--~~HPLe~~~~n~~~ 45 (141)
|+|+.-+..++. -+|-.|.|++|--+
T Consensus 18 k~Gl~e~~~dV~~lISHA~QeRLk~lvE 45 (50)
T d1h3oa_ 18 KHGITELHPDVVSYVSHATQQRLQNLVE 45 (50)
T ss_dssp TTTCCEECTTHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 468887777765 58888888887654
Done!