Query 032415
Match_columns 141
No_of_seqs 168 out of 292
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 22:39:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_Q 40S ribosomal protein S 100.0 2.3E-77 7.7E-82 461.6 8.5 139 1-140 1-140 (141)
2 2xzm_V RPS17E; ribosome, trans 100.0 4E-74 1.4E-78 438.9 9.5 125 1-125 1-125 (130)
3 3u5c_R RP51A, 40S ribosomal pr 100.0 1E-72 3.5E-77 433.7 9.3 123 1-124 1-127 (136)
4 3j20_S 30S ribosomal protein S 100.0 1.3E-39 4.5E-44 224.8 4.7 66 1-66 1-66 (67)
5 1rq6_A 30S ribosomal protein S 100.0 6.7E-37 2.3E-41 208.7 3.7 61 1-61 1-61 (62)
6 1wyu_A Glycine dehydrogenase ( 36.3 13 0.00044 29.9 1.4 19 99-117 8-26 (438)
7 2pl3_A Probable ATP-dependent 23.9 57 0.002 23.6 3.0 49 70-118 1-52 (236)
8 3shg_B VBHA; ampylation, adeny 21.0 14 0.00049 24.7 -0.7 41 73-115 2-45 (61)
9 3lvh_D LCB, clathrin light cha 19.5 24 0.00082 28.5 0.1 50 10-62 128-180 (205)
10 2fi0_A Conserved domain protei 15.0 20 0.00067 23.8 -1.2 23 94-116 17-39 (81)
No 1
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.3e-77 Score=461.65 Aligned_cols=139 Identities=71% Similarity=1.079 Sum_probs=132.2
Q ss_pred CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceecccHHHHhh
Q 032415 1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER 80 (141)
Q Consensus 1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriqrgpvrgisiklqEEerer 80 (141)
||+||||+||++|++|||+||++||+|||+||++|+|+|+||||+|||+||||||||||+||+|||||||||||||||||
T Consensus 1 MG~Vrtk~VKr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThlmKriq~GpvrgisiklqEeERer 80 (141)
T 3iz6_Q 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEEERER 80 (141)
T ss_dssp CCCCCCSHHHHHHHHHHTTTCCCCSCCHHHHHHHHHHSSSCCCTTTHHHHHHHHHHHHHHHCSCCCCCSSCCSSCCCCCS
T ss_pred CCCcccHHHHHHHHHHHHHhhhhhcCcHHhhhHHHHHhccccchhhhhhhhheeeehhhccccCCccccceehhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccccceeechHHHHHHHHcCCCCCCCeeeeCCCCCCCCCCCC-CCCCCccC
Q 032415 81 RMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAPGVEFGRG-GFAGARRR 140 (141)
Q Consensus 81 r~nyvpe~S~ld~~~i~VD~~T~eMlk~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~ 140 (141)
|||||||+|+||+|+|+|||||+||||+||||+|||++|+||++++ +|++. ...|+|||
T Consensus 81 rdnyvpe~S~ld~~~ieVD~dT~eMlk~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 140 (141)
T 3iz6_Q 81 RMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSAP-TYSRPPYGGPRRDR 140 (141)
T ss_dssp CSSSSCCCSEEEECCCCSSHHHHHHHHHTTTTCCSCEEEECCCSSC-CCCCTTTSCSCCSC
T ss_pred HhccCCccccccccceeECHHHHHHHHHcCCCCCCCceecCCcccc-CcCCCccCCcccCc
Confidence 9999999999999999999999999999999999999999998764 56653 45566676
No 2
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=100.00 E-value=4e-74 Score=438.93 Aligned_cols=125 Identities=66% Similarity=1.040 Sum_probs=120.8
Q ss_pred CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceecccHHHHhh
Q 032415 1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER 80 (141)
Q Consensus 1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriqrgpvrgisiklqEEerer 80 (141)
||+|||++||++|++|||+||++||+|||+||++|+|+|+|+||+|||+||||||||||++|+|||||||||||||||||
T Consensus 1 MG~Vrtk~VKr~a~~liEkY~~~ft~DFe~NK~vv~eia~I~SKklRNkIAGYVThlmkriq~gpvrgis~klqEeerer 80 (130)
T 2xzm_V 1 MGRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAGFATHLMKRIQKGPVRGISLKVQEEERER 80 (130)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHSBCCSHHHHHHHHHHHHHHHHHTTTSCCTTCCCTTTTHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhhhcCCHHHhhHHHHHHccCCChhheecccchhhhHhhhcccCcccccccchhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccccceeechHHHHHHHHcCCCCCCCeeeeCCCCC
Q 032415 81 RMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAP 125 (141)
Q Consensus 81 r~nyvpe~S~ld~~~i~VD~~T~eMlk~l~~~~~~~~~~~~~~~~ 125 (141)
|||||||+|+||+++|+|||||+||||+||||++||++|++|+++
T Consensus 81 rd~yvPe~S~ld~~~i~vD~~t~emlk~l~~~~~~~~~~~~~~~~ 125 (130)
T 2xzm_V 81 RLDYVPEKSIIDIEKVTIDNETKEMLKKLGYQNIPGLVSASAPAN 125 (130)
T ss_dssp TTSCCCSSCSSCSSSCCBCHHHHHHHHHHTCSSSSCCBCCCC---
T ss_pred hhccCCcccccccceeEECHHHHHHHHHcCCCCCCCceecCCCCc
Confidence 999999999999999999999999999999999999999999765
No 3
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=100.00 E-value=1e-72 Score=433.66 Aligned_cols=123 Identities=59% Similarity=0.934 Sum_probs=114.3
Q ss_pred CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceecccHHHHhh
Q 032415 1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER 80 (141)
Q Consensus 1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriqrgpvrgisiklqEEerer 80 (141)
||+|||||||++|++|||+||++||+|||+||++|+|+|+||||+|||+||||||||||+||+|||||||||||||||||
T Consensus 1 MG~Vrtk~VKr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThLmKriq~GpvrgisiklqEeERer 80 (136)
T 3u5c_R 1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERER 80 (136)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCCSCHHHHHHHHHHHEECSCHHHHHHHHHHHHHHHHHHTTSCBTTBCCSHHHHHHHT
T ss_pred CCCccchHHHHHHHHHHHHhhhhhcCcHHhhhHHHHHhhcccchhheeehhhhhhhhhcccccCCcccceeehhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccccccc----ceeechHHHHHHHHcCCCCCCCeeeeCCCC
Q 032415 81 RMDFVPDESAIKTD----QIEVDKETLDMLEALGMNEIPGLVRVDPVA 124 (141)
Q Consensus 81 r~nyvpe~S~ld~~----~i~VD~~T~eMlk~l~~~~~~~~~~~~~~~ 124 (141)
|||||||+|+||++ +|+|||||+||||+|||+ |||++|+.|..
T Consensus 81 rdnyvpe~S~ld~~~~~~~ieVD~~T~~mlk~l~~~-~~~~~~~~~~~ 127 (136)
T 3u5c_R 81 KDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLK-LPLSVINVSAQ 127 (136)
T ss_dssp TCCCCSSCC-----CCSSSCCBCHHHHHHHHHHCCC-CCCCBCCCCC-
T ss_pred hhccCCcchhhcccccCCceEEChHHHHHHHHcCCC-CCcceeccccc
Confidence 99999999999998 899999999999999998 99999988744
No 4
>3j20_S 30S ribosomal protein S17E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-39 Score=224.82 Aligned_cols=66 Identities=35% Similarity=0.691 Sum_probs=65.3
Q ss_pred CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhhcCcc
Q 032415 1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66 (141)
Q Consensus 1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriqrgpv 66 (141)
||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+||||||||||++|+||.
T Consensus 1 MG~vr~k~VKr~a~~liekY~~~~t~DF~~NK~vv~eia~i~SKklRNkIAGYvT~l~k~~~~g~~ 66 (67)
T 3j20_S 1 MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRMKMEGKI 66 (67)
T ss_dssp CCCCCCHHHHHHHHHHHHHSGGGCCSCHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCcchHHHHHHHHHHHHHhhhhhcccHHHhhHHHHHHhcccchhhhHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 5
>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1
Probab=100.00 E-value=6.7e-37 Score=208.70 Aligned_cols=61 Identities=43% Similarity=0.685 Sum_probs=60.2
Q ss_pred CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhh
Q 032415 1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 61 (141)
Q Consensus 1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKri 61 (141)
||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+||||||||||+.
T Consensus 1 MG~vr~k~iK~~a~~liekY~~~~t~DF~~NK~~v~e~a~i~SK~lRNkIAGYvT~l~k~~ 61 (62)
T 1rq6_A 1 MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQ 61 (62)
T ss_dssp CCCCCCHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHhHhHhcCCHHHhhHHHHHHcccccHhHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999976
No 6
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=36.30 E-value=13 Score=29.92 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=16.2
Q ss_pred chHHHHHHHHcCCCCCCCe
Q 032415 99 DKETLDMLEALGMNEIPGL 117 (141)
Q Consensus 99 D~~T~eMlk~l~~~~~~~~ 117 (141)
|.|.++||+.+|+.|+.-+
T Consensus 8 ~~~~~~ml~~~g~~~~~~~ 26 (438)
T 1wyu_A 8 EEEIREMLRRVGAASLEDL 26 (438)
T ss_dssp HHHHHHHHHHHTCSSTGGG
T ss_pred HHHHHHHHHHcCCCCHHHH
Confidence 6789999999999988654
No 7
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=23.95 E-value=57 Score=23.61 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=30.6
Q ss_pred eecccHHHHh-hccCCCCCc--ccccccceeechHHHHHHHHcCCCCCCCee
Q 032415 70 SLKLQEEERE-RRMDFVPDE--SAIKTDQIEVDKETLDMLEALGMNEIPGLV 118 (141)
Q Consensus 70 siklqEEere-rr~nyvpe~--S~ld~~~i~VD~~T~eMlk~l~~~~~~~~~ 118 (141)
|+++++++=+ -+++|.+.. +..+-+.+.++++..+-|+.+||..+...|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q 52 (236)
T 2pl3_A 1 SMQVERESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQ 52 (236)
T ss_dssp CCHHHHHHHHHHHHTTTTCCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHH
T ss_pred CccccHhHHHHHHhccccCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHH
Confidence 5666654433 355665421 122345567999999999999998765444
No 8
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=21.01 E-value=14 Score=24.71 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=29.4
Q ss_pred ccHHHHhhccCCCCCccccc---ccceeechHHHHHHHHcCCCCCC
Q 032415 73 LQEEERERRMDFVPDESAIK---TDQIEVDKETLDMLEALGMNEIP 115 (141)
Q Consensus 73 lqEEererr~nyvpe~S~ld---~~~i~VD~~T~eMlk~l~~~~~~ 115 (141)
|.|||+.+|..- --+||| -+.++.||.+.+.+...=-|.|+
T Consensus 2 ltEeE~~~Rr~a--vq~Aian~RLEGLEpd~~~l~~~erwv~GEis 45 (61)
T 3shg_B 2 LSEEEIEYRRRD--ARNALASQRLEGLEPDPQVVAQMERVVVGELE 45 (61)
T ss_dssp CCHHHHHHHHHH--HHHHHHHHHTTTCCCCHHHHHHHHHHHHTSSC
T ss_pred ccHHHHHHHHHH--HHHHHHhhhhccCCCCHHHHHHHHHHHHccCC
Confidence 567777766543 457887 47899999998888776555554
No 9
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=19.53 E-value=24 Score=28.51 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccc---cccchhhhhhhhhh
Q 032415 10 KKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRN---KIAGFSTHLMKRIQ 62 (141)
Q Consensus 10 Kr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRN---kIAGYVThLmKriq 62 (141)
+.-|+.=|+.+|.+....-+.||.--..- ...=|.+ -++|||||+-....
T Consensus 128 rekAkKeLddwY~~yneqlEK~ka~NR~a---eeeFlaqrd~~~~Gyv~~~~~~~~ 180 (205)
T 3lvh_D 128 REKAKKDLEEWNQRQSEQVEKNKINNRIA---DKAFYQQPDADIIXXXXXXXXXXX 180 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSS---TTTSSHHHHHHHCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHhCccchhhhhhcccccccc
Confidence 34455556666665555555444321100 0001222 37999999876443
No 10
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=14.98 E-value=20 Score=23.78 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=19.7
Q ss_pred cceeechHHHHHHHHcCCCCCCC
Q 032415 94 DQIEVDKETLDMLEALGMNEIPG 116 (141)
Q Consensus 94 ~~i~VD~~T~eMlk~l~~~~~~~ 116 (141)
|+++-+|++.+.|..+||+.+.+
T Consensus 17 elv~~~P~~~~vl~~~G~~~l~~ 39 (81)
T 2fi0_A 17 EVVDKHPEVLEILVELGFKPLAN 39 (81)
T ss_dssp HHHHHCGGGHHHHTTTTCGGGGS
T ss_pred HHHHHCHHHHHHHHHcCCccccC
Confidence 57888999999999999987643
Done!