BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032416
         (141 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480 OS=Arabidopsis thaliana
           GN=At1g66480 PE=1 SV=1
          Length = 225

 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 99/141 (70%), Gaps = 11/141 (7%)

Query: 1   MGNTIGGRRK-AKVMKIDGETIKLKTPIQASEVVKDYPGYVLLDSEAVKHFGIRAKPLEP 59
           MGN+I  +RK AKVMKIDGET ++KTP+ A EV  DYPGYVLLDS+AVKHFG+R+KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 60  RQQLKPKKVYFLVELPKLPDEEKIT--------RRVRSGIQMSAKDRLECLMLSRRAVSD 111
            Q LKPKK YFLVELPKLP E            RRV SGI + AK+RL+ LMLSRR VSD
Sbjct: 61  NQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSD 120

Query: 112 LTAVNVRSSHGSEVAPGTGDG 132
           +T    RS  G    P  G G
Sbjct: 121 VTI--GRSDGGDGFGPELGPG 139


>sp|P38329|YB85_YEAST Uncharacterized membrane protein YBR235W OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=YBR235W PE=1
           SV=1
          Length = 1120

 Score = 32.7 bits (73), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 14/93 (15%)

Query: 8   RRKAKVMKIDGETIKL--------KTPIQASEVVKDYPGYVLLDSEAVKHFGIRAKPLEP 59
           ++  +V++ID E + +         T ++   +V DY    L D+E  K        +E 
Sbjct: 806 KKLLQVLRIDAEVLVVSLDQFRVYNTIVKGDPIVFDYVNSKLADNEWWKDL------VEA 859

Query: 60  RQQLKPKKVYFLVELPKLPDEEKITRRVRSGIQ 92
           R  LKPK+ +  +E   +  +   +R+  SG+Q
Sbjct: 860 RDTLKPKRRFSTIEPQTIAKQFTQSRKYTSGVQ 892


>sp|Q18AP0|ADDB_CLOD6 ATP-dependent helicase/deoxyribonuclease subunit B OS=Clostridium
           difficile (strain 630) GN=addB PE=3 SV=1
          Length = 1155

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 16  IDGETIKLKTPIQASEVVKDYPGYVLLDSEAVKHFGIRAK 55
           ID + I+LK  I   E++   PGY+L  SE  K+   R K
Sbjct: 843 IDEKYIELKIGIIVDEIILKIPGYILNSSERYKYLAYRLK 882


>sp|Q0ST77|RNZ_CLOPS Ribonuclease Z OS=Clostridium perfringens (strain SM101 / Type A)
           GN=rnz PE=3 SV=1
          Length = 316

 Score = 30.0 bits (66), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 70  FLVELPKLPDEEKITRRVRSGIQMSAKDRLECLMLSRRAVSDLTAVNVRSSHGS 123
           FL+ LP LP +  I   V     M  K+++E + L+ +  SDL+   +   H S
Sbjct: 101 FLITLPYLPYKLNILEDVSDLEFMVKKEKMELVELNEKISSDLSIKTLELDHSS 154


>sp|Q8XKN1|RNZ_CLOPE Ribonuclease Z OS=Clostridium perfringens (strain 13 / Type A)
           GN=rnz PE=3 SV=1
          Length = 316

 Score = 29.6 bits (65), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 70  FLVELPKLPDEEKITRRVRSGIQMSAKDRLECLMLSRRAVSDLTAVNVRSSHGS 123
           FL+ LP LP +  I     +   M  K+++E + L+ +  SDLT   +   H S
Sbjct: 101 FLITLPYLPYKLNILEDASNLEFMVKKEKIELVELNEKISSDLTIETLGLDHSS 154


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.133    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,097,176
Number of Sequences: 539616
Number of extensions: 1895711
Number of successful extensions: 3685
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3677
Number of HSP's gapped (non-prelim): 19
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)