BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032417
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JY5|A Chain A, Rnase-Related Protein From Calystegia Sepium
pdb|1JY5|B Chain B, Rnase-Related Protein From Calystegia Sepium
Length = 212
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%), Gaps = 10/119 (8%)
Query: 1 MHWQWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSA 60
+ ++W KHGTCS PV+ ++Y YFSTTL LYFKYN++ +L+E+GYLPSNT +Y + GI+SA
Sbjct: 98 LAYEWAKHGTCSSPVLGNQYEYFSTTLMLYFKYNISEILSESGYLPSNTAEYKVEGIMSA 157
Query: 61 IQNAFHATPKLDCSKDAVNELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKYVSLPV 119
IQ+A TP + C DAV ++ +CF K + ++C P ++S+CP VSLP+
Sbjct: 158 IQSALRVTPVVKCKSDAVEQVQICFDKTLQLQEC-----PS-----TASTCPSLVSLPI 206
>pdb|1SGL|A Chain A, The Three-Dimensional Structure And X-Ray Sequence Reveal
That Trichomaglin Is A Novel S-Like Ribonuclease
Length = 209
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 76/116 (65%), Gaps = 12/116 (10%)
Query: 4 QWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQN 63
Q+EKHGTC+ PV++ E++YF TL L+ KYNV + L +AG + SN++ Y L IV A+++
Sbjct: 101 QYEKHGTCASPVIKGEWNYFKKTLKLFMKYNVDKALEDAGIVASNSKMYDLKDIVVAVES 160
Query: 64 AFHATPKLDCSKDA-VNELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKYVSLP 118
A A PKL C ++ V +L LCF KDFKPRDC+ SCP+YVSLP
Sbjct: 161 AVGARPKLRCDEEGLVQKLSLCFDKDFKPRDCV-----------QVGSCPRYVSLP 205
>pdb|1DIX|A Chain A, Crystal Structure Of Rnase Le
Length = 208
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 4 QWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQN 63
+WEKHGTC+ V+ ++++YF L+L + ++ +L A P + E Y L I +AI++
Sbjct: 96 EWEKHGTCAESVLTNQHAYFKKALDLKNQIDLLSILQGADIHP-DGESYDLVNIRNAIKS 154
Query: 64 AFHATPKLDCSKDAVNELHL 83
A TP + C+ D L
Sbjct: 155 AIGYTPWIQCNVDQSGNSQL 174
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus
Niveus At 2.0 A Resolution
Length = 222
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 4 QWEKHGTC----------SFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYP 53
+W KHGTC ++ D YF ++L +YNV + + G P T Y
Sbjct: 105 EWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGGT--YT 162
Query: 54 LGGIVSAIQNAFHATPKLDCSKDAVNELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPK 113
+ SAI++ F A K+DCS ++++ L FY + RD + + S+ SC
Sbjct: 163 ATEMQSAIESYFGAKAKIDCSSGTLSDVALYFY--VRGRDTYVIT-----DALSTGSCSG 215
Query: 114 YVSLPV 119
V P
Sbjct: 216 DVEYPT 221
>pdb|1IYB|A Chain A, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease
Nw
pdb|1IYB|B Chain B, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease
Nw
Length = 208
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 4 QWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQN 63
+WEKHGTC+ V D++ YF L+L + N+ +L AG P + Y L I +AI++
Sbjct: 97 EWEKHGTCAENVF-DQHGYFKKALDLKNQINLLEILQGAGIHP-DGGFYSLNSIKNAIRS 154
Query: 64 AFHATPKLDCSKDAVNELHL 83
A P ++C+ D L
Sbjct: 155 AIGYAPGIECNVDESGNSQL 174
>pdb|1IQQ|A Chain A, Crystal Structure Of Japanese Pear S3-Rnase
Length = 200
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 4 QWEKHGTCSFPVVRDEYSYFSTTLNLYF--KYNVTRVLNEAGYLPSNTEKYPLGGIVSAI 61
+W KHG+C +P + +E YF T + +Y K NV+R+L++A P + +K L I +AI
Sbjct: 84 EWMKHGSCGYPTIDNENHYFETVIKMYISKKQNVSRILSKAKIEP-DGKKRALLDIENAI 142
Query: 62 QNA 64
+N
Sbjct: 143 RNG 145
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp
pdb|1VD1|A Chain A, Crystal Structure Of Rnase Nt In Complex With 5'-Amp
pdb|1VD3|A Chain A, Ribonuclease Nt In Complex With 2'-ump
Length = 217
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 4 QWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQN 63
+W KHGTCS E +YF L+ K N+ L A P N E Y L I AI+
Sbjct: 97 EWLKHGTCS---ALGERAYFQAALDFRKKSNLLENLKNAEITPRNGEHYTLESIKKAIEE 153
Query: 64 AFHATPKLDCSKDA-----VNELHLCFYK 87
+P ++C+ D + +++LC K
Sbjct: 154 GVGHSPYIECNVDTQGNHQIYQVYLCVDK 182
>pdb|3T0O|A Chain A, Crystal Structure Analysis Of Human Rnase T2
Length = 238
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 4 QWEKHGTCSFPV--VRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAI 61
+WEKHGTC+ V + + YF +L LY + ++ VL + G PS Y + A+
Sbjct: 90 EWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPS-INYYQVADFKDAL 148
Query: 62 QNAFHATPKLDC---SKD----AVNELHLCFYK 87
+ PK+ C S+D + ++ LC K
Sbjct: 149 ARVYGVIPKIQCLPPSQDEEVQTIGQIELCLTK 181
>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase
Length = 247
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 4 QWEKHGTCSFPVVRDEYS----------YFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYP 53
+W KHGTC + Y+ +F ++L+ + L++AG PS Y
Sbjct: 111 EWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGITPSEDATYK 170
Query: 54 LGGIVSAIQNAFHAT--PKLDCSKDAVNELHLCF 85
L I A+ A H P + C A+++L+ F
Sbjct: 171 LSDIEDALA-AIHDGYPPYVGCEDGALSQLYYYF 203
>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases
As Antitumorigenic Agents
Length = 237
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 4 QWEKHGTCSFPVVRDEYS----------YFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYP 53
+W KHGTC + Y+ +F ++L+ + L++AG PS Y
Sbjct: 111 EWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGITPSEDATYK 170
Query: 54 LGGIVSAIQNAFHAT--PKLDCSKDAVNELHLCF 85
L I A+ A H P + C A+++L+ F
Sbjct: 171 LSDIEDALA-AIHDGYPPYVGCEDGALSQLYYYF 203
>pdb|1J1G|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71s In Complex
With 5'-Gmp
Length = 190
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 4 QWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQN 63
+W KHGTCS ++ +YF +++ Y++ L P+ K I ++
Sbjct: 84 EWTKHGTCSESTF-NQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTK-SRQAIKGFLKA 141
Query: 64 AFHATPKLDCSKDA------VNELHLCFYKD 88
F P L C D + E+ CF +D
Sbjct: 142 KFGKFPGLRCRTDPQTKVSYLVEVVACFAQD 172
>pdb|1J1F|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71t In Complex
With 5'-Gmp
Length = 191
Score = 32.3 bits (72), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 4 QWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQN 63
+W KHGTCS ++ +YF +++ Y++ L P+ K I ++
Sbjct: 85 EWTKHGTCSESTF-NQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTK-SRQAIKGFLKA 142
Query: 64 AFHATPKLDCSKDA------VNELHLCFYKD 88
F P L C D + E+ CF +D
Sbjct: 143 KFGKFPGLRCRTDPQTKVSYLVEVVACFAQD 173
>pdb|1UCG|A Chain A, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
pdb|1UCG|B Chain B, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
Length = 190
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 4 QWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQN 63
+W KHGTCS ++ +YF +++ Y++ L P+ K I ++
Sbjct: 84 EWTKHGTCSESTF-NQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTK-SRQAIKGFLKA 141
Query: 64 AFHATPKLDCSKDAVNELH------LCFYKD 88
F P L C D ++ CF +D
Sbjct: 142 KFGKFPGLRCRTDPQTKVSYLVQVVACFAQD 172
>pdb|1BK7|A Chain A, Ribonuclease Mc1 From The Seeds Of Bitter Gourd
pdb|1UCA|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
Gourd Seeds Complexed With 2'-Ump
pdb|1UCC|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
Gourd Seeds Complexed With 3'-Ump.
pdb|1UCD|A Chain A, Crystal Structure Of Ribonuclease Mc1 From Bitter Gourd
Seeds Complexed With 5'-Ump
Length = 190
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 4 QWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQN 63
+W KHGTCS ++ +YF +++ Y++ L P+ K I ++
Sbjct: 84 EWTKHGTCSESTF-NQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTK-SRQAIKGFLKA 141
Query: 64 AFHATPKLDCSKDAVNELH------LCFYKD 88
F P L C D ++ CF +D
Sbjct: 142 KFGKFPGLRCRTDPQTKVSYLVQVVACFAQD 172
>pdb|1TVI|A Chain A, Solution Structure Of Tm1509 From Thermotoga Maritima:
Vt1, A Nesgc Target Protein
Length = 172
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 28 NLYFKYNVTRVLNEA-GYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSKDAVNELHLCFY 86
NLYF+ ++ R+L E G K L IV H L S+D + EL+ F
Sbjct: 16 NLYFQGHMIRILGEGKGSKLLENLKEKLEEIVKKEIGDVHVNVIL-VSEDEIKELNQQFR 74
Query: 87 KDFKPRDCIIERSPENDNYFSSSSCPKYVS 116
+P D + E D Y CP V
Sbjct: 75 GQDRPTDVLTFPLMEEDVYGEIYVCPLIVE 104
>pdb|2VPW|A Chain A, Polysulfide Reductase With Bound Menaquinone
pdb|2VPW|E Chain E, Polysulfide Reductase With Bound Menaquinone
pdb|2VPX|A Chain A, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPX|E Chain E, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPY|A Chain A, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPY|E Chain E, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPZ|A Chain A, Polysulfide Reductase Native Structure
pdb|2VPZ|E Chain E, Polysulfide Reductase Native Structure
Length = 765
Score = 30.0 bits (66), Expect = 0.46, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 50 EKYPLGGIVSAIQNAFHATPKLDCSKDAVNELHLCFYKDFKPRDCII 96
E YP+ G+ + N FH+ P + +K+A+ L L D P++ ++
Sbjct: 428 EPYPIKGLFAYGINLFHSIPNVPRTKEALKNLDLYVAIDVLPQEHVM 474
>pdb|3KBA|A Chain A, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
pdb|3KBA|B Chain B, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
Length = 253
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 56 GIVSAIQNAFHATPKLDCSKDAVNELHL-CFYKDFKPRDCIIERSPENDNYFSSSSCPKY 114
G+VS+ Q + T LD D V +LHL C + R +E PE + ++ PK
Sbjct: 182 GVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVE-FPEMMSEVIAAQLPKI 240
Query: 115 VS 116
++
Sbjct: 241 LA 242
>pdb|2W8Y|A Chain A, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|2W8Y|B Chain B, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|3ZR7|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZR7|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|4A2J|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4A2J|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4APU|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
pdb|4APU|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
Length = 260
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 56 GIVSAIQNAFHATPKLDCSKDAVNELHL-CFYKDFKPRDCIIERSPENDNYFSSSSCPKY 114
G+VS+ Q + T LD D V +LHL C + R +E PE + ++ PK
Sbjct: 189 GVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVE-FPEMMSEVIAAQLPKI 247
Query: 115 VS 116
++
Sbjct: 248 LA 249
>pdb|1A28|A Chain A, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|1A28|B Chain B, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|2OVH|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Smrt
pdb|2OVM|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Ncor
pdb|3HQ5|A Chain A, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand.
pdb|3HQ5|B Chain B, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand
Length = 256
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 56 GIVSAIQNAFHATPKLDCSKDAVNELHL-CFYKDFKPRDCIIERSPENDNYFSSSSCPKY 114
G+VS+ Q + T LD D V +LHL C + R +E PE + ++ PK
Sbjct: 185 GVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVE-FPEMMSEVIAAQLPKI 243
Query: 115 VS 116
++
Sbjct: 244 LA 245
>pdb|1SR7|A Chain A, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1SR7|B Chain B, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1ZUC|B Chain B, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
pdb|1ZUC|A Chain A, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
Length = 259
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 56 GIVSAIQNAFHATPKLDCSKDAVNELHL-CFYKDFKPRDCIIERSPENDNYFSSSSCPKY 114
G+VS+ Q + T LD D V +LHL C + R +E PE + ++ PK
Sbjct: 188 GVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVE-FPEMMSEVIAAQLPKI 246
Query: 115 VS 116
++
Sbjct: 247 LA 248
>pdb|1E3K|A Chain A, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|1E3K|B Chain B, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|3D90|A Chain A, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
pdb|3D90|B Chain B, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
Length = 258
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 56 GIVSAIQNAFHATPKLDCSKDAVNELHL-CFYKDFKPRDCIIERSPENDNYFSSSSCPKY 114
G+VS+ Q + T LD D V +LHL C + R +E PE + ++ PK
Sbjct: 187 GVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVE-FPEMMSEVIAAQLPKI 245
Query: 115 VS 116
++
Sbjct: 246 LA 247
>pdb|1SQN|A Chain A, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
pdb|1SQN|B Chain B, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
Length = 261
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 56 GIVSAIQNAFHATPKLDCSKDAVNELHL-CFYKDFKPRDCIIERSPENDNYFSSSSCPKY 114
G+VS+ Q + T LD D V +LHL C + R +E PE + ++ PK
Sbjct: 190 GVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVE-FPEMMSEVIAAQLPKI 248
Query: 115 VS 116
++
Sbjct: 249 LA 250
>pdb|3G8O|A Chain A, Progesterone Receptor With Bound Pyrrolidine 1
pdb|3G8O|B Chain B, Progesterone Receptor With Bound Pyrrolidine 1
Length = 263
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 56 GIVSAIQNAFHATPKLDCSKDAVNELHL-CFYKDFKPRDCIIERSPENDNYFSSSSCPKY 114
G+VS+ Q + T LD D V +LHL C + R +E PE + ++ PK
Sbjct: 192 GVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVE-FPEMMSEVIAAQLPKI 250
Query: 115 VS 116
++
Sbjct: 251 LA 252
>pdb|1V9H|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant Y101a In Complex
With 5'-Ump
Length = 197
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 4 QWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQN 63
+W KHGTCS ++ + F +++ Y++ L P+ K I ++
Sbjct: 91 EWTKHGTCSESTF-NQAAAFKLAVDMRNNYDIIGALRPHAAGPNGRTK-SRQAIKGFLKA 148
Query: 64 AFHATPKLDCSKDA------VNELHLCFYKD 88
F P L C D + E+ CF +D
Sbjct: 149 KFGKFPGLRCRTDPQTKVSYLVEVVACFAQD 179
>pdb|1LP3|A Chain A, The Atomic Structure Of Adeno-Associated Virus (Aav-2), A
Vector For Human Gene Therapy
pdb|3J1S|A Chain A, Structure Of Adeno-Associated Virus-2 In Complex With
Neutralizing Monoclonal Antibody A20
Length = 519
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 20/133 (15%)
Query: 14 PVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPS----NTEKYPLGGIVSAIQNA---FH 66
PV ++Y ST L + T +N G LP + + Y G I + I + FH
Sbjct: 354 PVATEQYGSVSTNLQRGNRQAATADVNTQGVLPGMVWQDRDVYLQGPIWAKIPHTDGHFH 413
Query: 67 ATPKLDCSKDAVNELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKYVSLPVYMSSGVD 126
+P L F P +I+ +P N ++ S K+ S S+G
Sbjct: 414 PSP-----------LMGGFGLKHPPPQILIKNTPVPANPSTTFSAAKFASFITQYSTG-- 460
Query: 127 DATAAIPWILENE 139
+ I W L+ E
Sbjct: 461 QVSVEIEWELQKE 473
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 77 AVNELHLCFYKDFKPRDCIIERSPEN 102
A + HL +KDF DC+IE EN
Sbjct: 344 AFLQKHLGLHKDFDQWDCLIEGDDEN 369
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 82 HLCFYKDFKPRDCIIERSPEN 102
HL +KDF DC+IE EN
Sbjct: 349 HLGLHKDFDQWDCLIEGDDEN 369
>pdb|3KIC|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|B Chain B, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|C Chain C, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|D Chain D, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|E Chain E, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|F Chain F, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|G Chain G, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|H Chain H, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|I Chain I, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|J Chain J, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|K Chain K, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|L Chain L, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|M Chain M, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|N Chain N, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|O Chain O, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|P Chain P, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|Q Chain Q, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|R Chain R, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|S Chain S, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|T Chain T, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|B Chain B, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|C Chain C, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|D Chain D, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|E Chain E, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|F Chain F, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|G Chain G, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|H Chain H, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|I Chain I, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|J Chain J, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|K Chain K, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|L Chain L, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|M Chain M, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|N Chain N, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|O Chain O, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|P Chain P, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|Q Chain Q, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|R Chain R, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|S Chain S, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|T Chain T, Crystal Structure Of Adeno-Associated Virus Serotype 3b
Length = 736
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 20/133 (15%)
Query: 14 PVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPS----NTEKYPLGGIVSAIQNA---FH 66
PV ++Y + L TR +N+ G LP + + Y G I + I + FH
Sbjct: 571 PVATEQYGTVANNLQSSNTAPTTRTVNDQGALPGMVWQDRDVYLQGPIWAKIPHTDGHFH 630
Query: 67 ATPKLDCSKDAVNELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKYVSLPVYMSSGVD 126
+P L F P +I+ +P N ++ S K+ S S+G
Sbjct: 631 PSP-----------LMGGFGLKHPPPQIMIKNTPVPANPPTTFSPAKFASFITQYSTG-- 677
Query: 127 DATAAIPWILENE 139
+ I W L+ E
Sbjct: 678 QVSVEIEWELQKE 690
>pdb|4FD7|A Chain A, Crystal Structure Of Insect Putative Arylalkylamine N-
Acetyltransferase 7 From The Yellow Fever Mosquito Aedes
Aegypt
pdb|4FD7|B Chain B, Crystal Structure Of Insect Putative Arylalkylamine N-
Acetyltransferase 7 From The Yellow Fever Mosquito Aedes
Aegypt
pdb|4FD7|C Chain C, Crystal Structure Of Insect Putative Arylalkylamine N-
Acetyltransferase 7 From The Yellow Fever Mosquito Aedes
Aegypt
pdb|4FD7|D Chain D, Crystal Structure Of Insect Putative Arylalkylamine N-
Acetyltransferase 7 From The Yellow Fever Mosquito Aedes
Aegypt
Length = 238
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 13 FPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNA 64
F + D Y S N++ +YNV LN G S KY GI + I A
Sbjct: 122 FQAIYDTIEYVSHQANIFDRYNVDHYLNAMGL--SVDPKYRGRGIATEILRA 171
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 25.8 bits (55), Expect = 8.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 13 FPVVRDEYSYFSTTL-NLYFKYNVTRVLNEAGYLPSNTEKYPLGGI 57
+ + RDE YF+ TL N+ + VL++A +P +Y G+
Sbjct: 33 YEMERDEKGYFTITLNNVKVRDRYKYVLDDASEIPDPASRYQPEGV 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,641,550
Number of Sequences: 62578
Number of extensions: 180807
Number of successful extensions: 370
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 36
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)