Query 032417
Match_columns 141
No_of_seqs 117 out of 1123
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 22:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sgl_A Trichomaglin; S-like ri 100.0 4.1E-35 1.4E-39 226.9 11.6 110 1-121 98-208 (209)
2 1jy5_A CALSEPRRP; RNAse, alpha 100.0 4.2E-35 1.4E-39 227.4 11.4 113 1-123 98-210 (212)
3 1vcz_A RNAse NGR3; hydrolase, 100.0 2.5E-34 8.6E-39 223.8 9.3 116 1-127 94-215 (217)
4 1iyb_A Ribonuclease, ribonucle 100.0 4.6E-34 1.6E-38 220.9 10.6 109 1-120 94-208 (208)
5 1ucd_A Ribonuclease MC; alpha 100.0 2.2E-32 7.5E-37 208.9 10.1 103 1-117 81-190 (190)
6 1ioo_A SF11-RNAse; SELF-incomp 100.0 5.3E-32 1.8E-36 207.5 10.8 105 1-119 84-196 (196)
7 3d3z_A Actibind; RNAse, hydrol 100.0 5.3E-32 1.8E-36 214.9 8.4 114 1-123 108-238 (247)
8 1iqq_A S3-RNAse; japanese PEAR 100.0 2.4E-31 8.2E-36 204.4 10.3 111 1-117 81-200 (200)
9 1bol_A Protein (ribonuclease R 100.0 1.7E-31 5.9E-36 208.7 7.1 108 1-119 102-221 (222)
10 3t0o_A Ribonuclease T2, ribonu 100.0 5.5E-30 1.9E-34 202.5 10.1 122 1-123 87-230 (238)
11 2pqx_A Ribonuclease I; hydrola 99.9 2.4E-27 8.2E-32 187.4 7.4 109 1-121 126-244 (245)
12 4dvk_A E(RNS) glycoprotein; T2 98.6 4.6E-09 1.6E-13 78.3 -0.2 26 1-29 72-97 (165)
13 2ciw_A Chloroperoxidase; oxido 85.4 0.45 1.5E-05 38.3 2.6 36 34-69 31-66 (299)
14 3oqg_A HPY188I; endonuclease-D 59.6 3.1 0.00011 29.8 1.1 21 3-29 103-123 (180)
15 2cu1_A Mitogen-activated prote 36.6 42 0.0014 22.6 3.8 28 49-76 25-52 (103)
16 2kdo_A Ribosome maturation pro 22.9 57 0.0019 25.3 2.9 31 34-64 112-142 (252)
17 1q1v_A DEK protein; winged-hel 21.0 82 0.0028 19.4 2.9 36 18-67 13-49 (70)
18 2wbm_A MTHSBDS, ribosome matur 20.9 54 0.0018 25.5 2.4 32 33-64 122-153 (252)
19 2c60_A Human mitogen-activated 20.6 1.3E+02 0.0046 20.3 4.0 61 17-78 14-77 (111)
No 1
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1
Probab=100.00 E-value=4.1e-35 Score=226.95 Aligned_cols=110 Identities=51% Similarity=0.947 Sum_probs=103.2
Q ss_pred CcchhccccccCCCCCCCHHHHHHHHHHhhhhcchhHHHHhcCCCCCCCcccchHHHHHHHHHHhCCCceEEecC-CCcc
Q 032417 1 MHWQWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSK-DAVN 79 (141)
Q Consensus 1 ~~hEW~KHGTCs~~~~~~~~~YF~~a~~L~~k~ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~g~~p~l~C~~-~~L~ 79 (141)
|+|||+|||||++.++.++.+||++|++|++++|++++|+++||+|+.+++|++++|++||++++|..|.|+|.+ +.|.
T Consensus 98 W~hEw~KHGTC~~~~~~~~~~YF~~a~~L~~~~~l~~~L~~~gI~P~~g~~yt~~~I~~Ai~~~~g~~p~l~C~~~~~L~ 177 (209)
T 1sgl_A 98 WGQQYEKHGTCASPVIKGEWNYFKKTLKLFMKYNVDKALEDAGIVASNSKMYDLKDIVVAVESAVGARPKLRCDEEGLVQ 177 (209)
T ss_dssp HHHHHHHTGGGGTTTSCSHHHHHHHHHHHHHHTCHHHHHHHHTCCCCSSCEEEHHHHHHHHHHHHSSCCEEEECTTSBEE
T ss_pred HHHhhhcCccccccccccHHHHHHHHHHHHHHcChHHHHHHCCCcCCCCccccHHHHHHHHHHHhCCCeEEEECCCCeEE
Confidence 579999999999987669999999999999999999999999999988899999999999999999999999987 7999
Q ss_pred eEEEEEeCCCceecCCCCCCCCCCCCCCCCCCCCceeecCCc
Q 032417 80 ELHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKYVSLPVYM 121 (141)
Q Consensus 80 EV~iC~~~~~~~~~Cp~~~~~~~~~~~~~~~Cp~~i~~p~~~ 121 (141)
||+|||++++++++|+. .+.||..|.||+++
T Consensus 178 Ev~iC~~~~~~~i~C~~-----------~~~C~~~i~~p~~~ 208 (209)
T 1sgl_A 178 KLSLCFDKDFKPRDCVQ-----------VGSCPRYVSLPEIP 208 (209)
T ss_dssp EEEEEEETTCCEECCCC-----------CCCSCSEEECCCCC
T ss_pred EEEEEeCCCccEeCCCC-----------CCCCCCCeEeCCCC
Confidence 99999999999999941 46899999999986
No 2
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1
Probab=100.00 E-value=4.2e-35 Score=227.35 Aligned_cols=113 Identities=50% Similarity=0.994 Sum_probs=104.3
Q ss_pred CcchhccccccCCCCCCCHHHHHHHHHHhhhhcchhHHHHhcCCCCCCCcccchHHHHHHHHHHhCCCceEEecCCCcce
Q 032417 1 MHWQWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSKDAVNE 80 (141)
Q Consensus 1 ~~hEW~KHGTCs~~~~~~~~~YF~~a~~L~~k~ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~g~~p~l~C~~~~L~E 80 (141)
|+|||+|||||++.++.++.+||++|++|++++|++++|+++||+|+++++|++++|++||++++|..|.|+|.++.|.|
T Consensus 98 W~hEw~KHGTC~~~~~~~~~~YF~~a~~l~~~~nl~~~L~~~gI~Ps~g~~yt~~~I~~Ai~~~~g~~p~l~C~~~~l~e 177 (212)
T 1jy5_A 98 LAYEWAKHGTCSSPVLGNQYEYFSTTLMLYFKYNISEILSESGYLPSNTAEYKVEGIMSAIQSALRVTPVVKCKSDAVEQ 177 (212)
T ss_dssp HHHHHHHTGGGGTTTSCSHHHHHHHHHHHHHHSCHHHHHHTTTCCCCSSCCEEHHHHHHHHHHHHSSCCEEEEETTEEEE
T ss_pred HHHhhhhCceeCcccccCHHHHHHHHHHHHHhcCHHHHHHHcCCcCCCCceEcHHHHHHHHHHhhCCCEEEEeCCCCcce
Confidence 47999999999997645999999999999999999999999999998889999999999999999999999999999999
Q ss_pred EEEEEeCCCceecCCCCCCCCCCCCCCCCCCCCceeecCCccC
Q 032417 81 LHLCFYKDFKPRDCIIERSPENDNYFSSSSCPKYVSLPVYMSS 123 (141)
Q Consensus 81 V~iC~~~~~~~~~Cp~~~~~~~~~~~~~~~Cp~~i~~p~~~~~ 123 (141)
|+|||++++++++||. ..+.||+.|.||++.+.
T Consensus 178 v~lC~~~~~~~i~C~~----------~~~~C~~~i~~p~~~~~ 210 (212)
T 1jy5_A 178 VQICFDKTLQLQECPS----------TASTCPSLVSLPIKNTI 210 (212)
T ss_dssp EEEEECTTSCEECCCC----------CCCCSCSEEBCCCCC--
T ss_pred EEEEEcCCCcEecCCC----------CCCCCCCCEEeCCCCCC
Confidence 9999999999999983 35689999999999864
No 3
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A*
Probab=100.00 E-value=2.5e-34 Score=223.77 Aligned_cols=116 Identities=30% Similarity=0.512 Sum_probs=99.6
Q ss_pred CcchhccccccCCCCCCCHHHHHHHHHHhhhhcchhHHHHhcCCCCCCCcccchHHHHHHHHHHhCCCceEEecC-----
Q 032417 1 MHWQWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSK----- 75 (141)
Q Consensus 1 ~~hEW~KHGTCs~~~~~~~~~YF~~a~~L~~k~ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~g~~p~l~C~~----- 75 (141)
|+|||+|||||++. ++.+||++|++|++++|++++|+++||+|+.+++|++++|++||++++|..|.|+|.+
T Consensus 94 W~hEw~KHGTC~~~---~~~~YF~~a~~l~~~~n~~~~L~~~gI~Ps~g~~~t~~~I~~Ai~~~~g~~p~l~C~~~~~~~ 170 (217)
T 1vcz_A 94 WSHEWLKHGTCSAL---GERAYFQAALDFRKKSNLLENLKNAEITPRNGEHYTLESIKKAIEEGVGHSPYIECNVDTQGN 170 (217)
T ss_dssp HHHHHHHTGGGTTS---CHHHHHHHHHHHHHHHCHHHHHHHTTCCCEEEEEEEHHHHHHHHHHHHSSCCEEEEEECTTSC
T ss_pred HhhhccCCeecCCC---CHHHHHHHHHHHHHHcccHHHHHHCCCccCcCccccHHHHHHHHHHHHCCCeEEEEeecCCCC
Confidence 58999999999995 9999999999999999999999999999987889999999999999999999999973
Q ss_pred CCcceEEEEEeCC-CceecCCCCCCCCCCCCCCCCCCCCceeecCCccCCCCC
Q 032417 76 DAVNELHLCFYKD-FKPRDCIIERSPENDNYFSSSSCPKYVSLPVYMSSGVDD 127 (141)
Q Consensus 76 ~~L~EV~iC~~~~-~~~~~Cp~~~~~~~~~~~~~~~Cp~~i~~p~~~~~~~~~ 127 (141)
..|.||+||||++ +++++||.. ...+.||..|.||++++.+..+
T Consensus 171 ~~L~Ev~iC~~~~~~~~i~C~~~--------~~~~~C~~~i~~p~~~~~~~~~ 215 (217)
T 1vcz_A 171 HQIYQVYLCVDKTATDFIDCPIF--------PHGRGCGSKIEFPPFSSESDHD 215 (217)
T ss_dssp EEEEEEEEEEETTSSSEECCSSC--------CCCCCCCSEEEECCC-------
T ss_pred eEEEEEEEEecCCCCeeeeCCCC--------CCCCCCCCCeEEcCCCCccccc
Confidence 3799999999999 589999853 1225899999999998766543
No 4
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A {Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A
Probab=100.00 E-value=4.6e-34 Score=220.90 Aligned_cols=109 Identities=28% Similarity=0.571 Sum_probs=99.4
Q ss_pred CcchhccccccCCCCCCCHHHHHHHHHHhhhhcchhHHHHhcCCCCCCCcccchHHHHHHHHHHhCCCceEEecC-----
Q 032417 1 MHWQWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSK----- 75 (141)
Q Consensus 1 ~~hEW~KHGTCs~~~~~~~~~YF~~a~~L~~k~ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~g~~p~l~C~~----- 75 (141)
|+|||+|||||++.+ .++.+||++|++|++++|++++|+++||+| .+++|++++|++||++++|..|.|+|.+
T Consensus 94 W~hEw~KHGTC~~~~-~~q~~YF~~a~~l~~~~~~~~~L~~~gI~P-~~~~~t~~~I~~Ai~~~~g~~p~l~C~~~~~~~ 171 (208)
T 1iyb_A 94 WSHEWEKHGTCAENV-FDQHGYFKKALDLKNQINLLEILQGAGIHP-DGGFYSLNSIKNAIRSAIGYAPGIECNVDESGN 171 (208)
T ss_dssp HHHHHHHTGGGGTTT-CCHHHHHHHHHHHHHHCCHHHHHHHTTCCS-SSCEEEHHHHHHHHHHHHSSCCEEEEEECTTCC
T ss_pred HHhhccCCeeeCccc-cCHHHHHHHHHHHHHHcChHHHHHHCCccc-CCceEeHHHHHHHHHHHhCCCeEEEEeeCCCCC
Confidence 589999999999965 399999999999999999999999999999 5789999999999999999999999973
Q ss_pred CCcceEEEEEeCC-CceecCCCCCCCCCCCCCCCCCCCCceeecCC
Q 032417 76 DAVNELHLCFYKD-FKPRDCIIERSPENDNYFSSSSCPKYVSLPVY 120 (141)
Q Consensus 76 ~~L~EV~iC~~~~-~~~~~Cp~~~~~~~~~~~~~~~Cp~~i~~p~~ 120 (141)
..|.||+||||++ +++++||.. ..+.||..|.||+|
T Consensus 172 ~~L~Ev~iC~~~~~~~~i~C~~~---------~~~~C~~~i~~p~f 208 (208)
T 1iyb_A 172 SQLYQIYICVDGSGSNLIECPIF---------PRGKCGSSIEFPTF 208 (208)
T ss_dssp EEEEEEEEEEETTSSSBCCCSCC---------CCCCCCSEEECCCC
T ss_pred eEEEEEEEEecCCCCeeecCCCC---------CCCCCCCCcCcCCC
Confidence 3799999999999 689999853 34689999999987
No 5
>1ucd_A Ribonuclease MC; alpha plus beta, hydrolase; HET: U5P; 1.30A {Momordica charantia} SCOP: d.124.1.1 PDB: 1bk7_A* 1ucc_A* 1uca_A* 1v9h_A* 1j1f_A* 1ucg_A 1j1g_A*
Probab=99.97 E-value=2.2e-32 Score=208.89 Aligned_cols=103 Identities=22% Similarity=0.453 Sum_probs=94.4
Q ss_pred CcchhccccccCCCCCCCHHHHHHHHHHhhhhcchhHHHHhcCCCCCCCcccchHHHHHHHHHHhCCCceEEecC-----
Q 032417 1 MHWQWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSK----- 75 (141)
Q Consensus 1 ~~hEW~KHGTCs~~~~~~~~~YF~~a~~L~~k~ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~g~~p~l~C~~----- 75 (141)
|+|||+|||||+...+ ++.+||++|++|++++|++++|+++||+|+ +++|++++|++||++++|..|.|+|.+
T Consensus 81 W~hEw~KHGTC~~~~~-~~~~YF~~a~~l~~~~~~~~~L~~~~I~P~-~~~~t~~~I~~ai~~~~g~~p~l~C~~~~~~~ 158 (190)
T 1ucd_A 81 WSHEWTKHGTCSESTF-NQAAYFKLAVDMRNNYDIIGALRPHAAGPN-GRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTK 158 (190)
T ss_dssp HHHHHHHTGGGGTTTC-CHHHHHHHHHHHHHTCCHHHHHGGGTCSCS-SSEEEHHHHHHHHHHHHSSCCEEEEEECTTTC
T ss_pred HHhccccCcEeCCCCC-CHHHHHHHHHHHHHHcCHHHHHHHCCCCCC-CceEeHHHHHHHHHHHHCCCeEEEeccCCCCC
Confidence 5899999999998654 999999999999999999999999999998 778999999999999999999999973
Q ss_pred -CCcceEEEEEeCC-CceecCCCCCCCCCCCCCCCCCCCCceee
Q 032417 76 -DAVNELHLCFYKD-FKPRDCIIERSPENDNYFSSSSCPKYVSL 117 (141)
Q Consensus 76 -~~L~EV~iC~~~~-~~~~~Cp~~~~~~~~~~~~~~~Cp~~i~~ 117 (141)
..|.||+||||++ +++++||. ..|+.++.|
T Consensus 159 ~~~L~Ev~iC~~~~~~~~i~Cp~------------~~C~~~~~f 190 (190)
T 1ucd_A 159 VSYLVQVVACFAQDGSTLIDCTR------------DTCGANFIF 190 (190)
T ss_dssp CEEEEEEEEEEETTSSSEECCCC------------CCCCSEEEC
T ss_pred CcEEEEEEEEecCCCCeeccCCC------------CCCCCCCCC
Confidence 4899999999999 78999983 479998765
No 6
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1
Probab=99.97 E-value=5.3e-32 Score=207.54 Aligned_cols=105 Identities=24% Similarity=0.518 Sum_probs=93.9
Q ss_pred CcchhccccccCCCCCCCHHHHHHHHHHhhhhcchhHHHHhcCCCCCCCcccchHHHHHHHHHHhCCCceEEecC-----
Q 032417 1 MHWQWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSK----- 75 (141)
Q Consensus 1 ~~hEW~KHGTCs~~~~~~~~~YF~~a~~L~~k~ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~g~~p~l~C~~----- 75 (141)
|+|||+|||||++.++ ++.+||++|++|++++|++++|+++||+|+. +|++++|++||++++|..|.|+|..
T Consensus 84 W~hEw~KHGTC~~~~~-~q~~YF~~a~~L~~~~n~~~~L~~~gI~P~~--~~t~~~I~~Ai~~~~g~~p~l~C~~~~~~~ 160 (196)
T 1ioo_A 84 WKYQYIKHGSCCQKRY-NQNTYFGLALRLKDKFDLLRTLQTHRIIPGS--SYTFQDIFDAIKTVSQENPDIKCAEVTKGT 160 (196)
T ss_dssp HHHHHHHTGGGCTTTC-CHHHHHHHHHHHHHTCCHHHHHHHTTCCTTE--EECHHHHHHHHHHHHSSCCEEEEECSSTTC
T ss_pred HHhhCcCCcCcCCCcC-CHHHHHHHHHHHHHHCCHHHHHHHCCCccCC--CcCHHHHHHHHHHHhCCCeEEEeeecCCCC
Confidence 5799999999999764 8999999999999999999999999999964 5999999999999999999999952
Q ss_pred CCcceEEEEEeCCCc-eecCCCCCCCCCCCCCCCCCC--CCceeecC
Q 032417 76 DAVNELHLCFYKDFK-PRDCIIERSPENDNYFSSSSC--PKYVSLPV 119 (141)
Q Consensus 76 ~~L~EV~iC~~~~~~-~~~Cp~~~~~~~~~~~~~~~C--p~~i~~p~ 119 (141)
..|.||+||||++++ +++||.. ..| +..|.||+
T Consensus 161 ~~L~Ev~iC~~~~~~~~i~Cp~~-----------~~C~~~~~i~fp~ 196 (196)
T 1ioo_A 161 PELYEIGICFTPNADSMFRCPQS-----------DTCDKTAKVLFRR 196 (196)
T ss_dssp CEEEEEEEEECTTSSSEECCCCC-----------CCSCTTSCEEECC
T ss_pred eEEEEEEEEEeCCCCEEeCCcCC-----------CCCCCCCCeecCC
Confidence 479999999999985 9999842 579 45699984
No 7
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger}
Probab=99.97 E-value=5.3e-32 Score=214.86 Aligned_cols=114 Identities=24% Similarity=0.410 Sum_probs=101.3
Q ss_pred CcchhccccccCCCC-------C---CCHHHHHHHHHHhhhhcchhHHHHhcCCCCCCCcccchHHHHHHHHHHh-CCCc
Q 032417 1 MHWQWEKHGTCSFPV-------V---RDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAF-HATP 69 (141)
Q Consensus 1 ~~hEW~KHGTCs~~~-------~---~~~~~YF~~a~~L~~k~ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~-g~~p 69 (141)
|+|||+|||||++.+ + .++.+||++|++|++++|+.++|+++||+|+.+++|++++|++||++++ |..|
T Consensus 108 W~hEW~KHGTC~~~~~~~C~~~y~~~~~~~~YF~~al~L~~k~n~~~~L~~~gI~P~~~~tyt~~~I~~Ai~~~~~g~~p 187 (247)
T 3d3z_A 108 WEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGITPSEDATYKLSDIEDALAAIHDGYPP 187 (247)
T ss_dssp HHHHHHHTGGGCGGGSGGGBSSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCCSSCCBCHHHHHHHHHTTTTTCCC
T ss_pred HHHhhhcCeeecccCCcccccccccccCHHHHHHHHHHHHHhcCcHHHHHHCCccCCCCceECHHHHHHHHHHhcCCCCe
Confidence 589999999998742 1 3688999999999999999999999999999888999999999999999 8999
Q ss_pred eEEecCCCcceEEEEEeCCC-----ceecCCCCCCCCCCCCCCCCCCCCc-eeecCCccC
Q 032417 70 KLDCSKDAVNELHLCFYKDF-----KPRDCIIERSPENDNYFSSSSCPKY-VSLPVYMSS 123 (141)
Q Consensus 70 ~l~C~~~~L~EV~iC~~~~~-----~~~~Cp~~~~~~~~~~~~~~~Cp~~-i~~p~~~~~ 123 (141)
.|+|.++.|.||+||||+++ +++.|+.. ..+.||.. |.||+++..
T Consensus 188 ~l~C~~~~L~Ev~iC~~~~~~~~~~~~~~~~~~---------~~~~C~~~~I~~pp~~~~ 238 (247)
T 3d3z_A 188 YVGCEDGALSQLYYYFNVKGSAIGGTYVASERL---------EDSNCKDSGIKYPPKYSS 238 (247)
T ss_dssp EEEEETTEEEEEEEEEEEESCTTTSEEEECCCS---------SCBSSCSSCBBCCCTTCC
T ss_pred EEEeCCCEEEEEEEEEecCCCccCCceeECCCC---------CCCCCCCCceEeCCCCCC
Confidence 99999999999999999986 46777753 35789987 999999853
No 8
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1
Probab=99.97 E-value=2.4e-31 Score=204.42 Aligned_cols=111 Identities=34% Similarity=0.598 Sum_probs=95.2
Q ss_pred CcchhccccccCCCCCCCHHHHHHHHHHhh--hhcchhHHHHhcCCCCCCCcccchHHHHHHHHHHh-CCCceEEecC--
Q 032417 1 MHWQWEKHGTCSFPVVRDEYSYFSTTLNLY--FKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAF-HATPKLDCSK-- 75 (141)
Q Consensus 1 ~~hEW~KHGTCs~~~~~~~~~YF~~a~~L~--~k~ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~-g~~p~l~C~~-- 75 (141)
|+|||+|||||+...+.++.+||++|++|+ +++|++++|+++||+|+ +++|++++|++||++++ |..|.|+|.+
T Consensus 81 W~hEw~KHGTC~~~~~~~~~~YF~~a~~l~~~~k~n~~~~L~~~~I~P~-~~~~t~~~I~~Ai~~~~~g~~p~l~C~~~~ 159 (200)
T 1iqq_A 81 WDKEWMKHGSCGYPTIDNENHYFETVIKMYISKKQNVSRILSKAKIEPD-GKKRALLDIENAIRNGADNKKPKLKCQKKG 159 (200)
T ss_dssp HHHHHHHTGGGSTTTSCSHHHHHHHHHHHHTTTCCCHHHHHHHTTCCSS-CCEECHHHHHHHHHTTTTTCCCEEEEEEET
T ss_pred HHhhhhCCcCcCCcccCCHHHHHHHHHHHHhhcccCHHHHHHHcCCccC-CCeecHHHHHHHHHHhcCCCceEEEEeeCC
Confidence 589999999999653359999999999999 77999999999999997 56799999999999999 8999999984
Q ss_pred --CCcceEEEEEeCCC-ceecCCCCCCCCCCCCCCCCCCCCc-eee
Q 032417 76 --DAVNELHLCFYKDF-KPRDCIIERSPENDNYFSSSSCPKY-VSL 117 (141)
Q Consensus 76 --~~L~EV~iC~~~~~-~~~~Cp~~~~~~~~~~~~~~~Cp~~-i~~ 117 (141)
..|.||+|||++++ ++++||... +....+.||.. |.|
T Consensus 160 ~~~~L~Ev~iC~~~~~~~~i~C~~~~-----~~~~~~~Cp~~~i~y 200 (200)
T 1iqq_A 160 TTTELVEITLCSDKSGEHFIDCPHPF-----EPISPHYCPTNNIKY 200 (200)
T ss_dssp TEEEEEEEEEEECTTSSSEECCSCCC-----CTTSTTCCCSSCEEC
T ss_pred CCeEEEEEEEEEECCCCeEEeCCCCC-----CCCCCCCCCccCcCC
Confidence 37999999999997 699998641 11346799974 764
No 9
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1
Probab=99.97 E-value=1.7e-31 Score=208.72 Aligned_cols=108 Identities=31% Similarity=0.521 Sum_probs=96.6
Q ss_pred CcchhccccccCCCC-------C---CCHHHHHHHHHHhhhhcchhHHHHhcCCCCCCCcccchHHHHHHHHHHhCCCce
Q 032417 1 MHWQWEKHGTCSFPV-------V---RDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPK 70 (141)
Q Consensus 1 ~~hEW~KHGTCs~~~-------~---~~~~~YF~~a~~L~~k~ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~g~~p~ 70 (141)
|+|||+|||||++.+ + .++.+||++|++|++++|++++|+++||+|+. +|++++|++||++++|..|.
T Consensus 102 W~hEW~KHGTC~~~~~~~c~~~y~~~~~~~~YF~~al~L~~~~n~~~~L~~~gI~P~~--~yt~~~I~~Ai~~~~g~~p~ 179 (222)
T 1bol_A 102 WSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGG--TYTATEMQSAIESYFGAKAK 179 (222)
T ss_dssp HHHHHHHTGGGCGGGSGGGCTTCCTTHHHHHHHHHHHHHHHHSCHHHHHHTTTCCSSE--EEEHHHHHHHHHHHHSSCCE
T ss_pred HHhhhhcCeeeccccCccccccccccccHHHHHHHHHHHHHHcCcHHHHHHcCCCCCC--cCcHHHHHHHHHHHhCCCeE
Confidence 589999999999742 1 36899999999999999999999999999974 59999999999999999999
Q ss_pred EEecCCCcceEEEEEeCC--CceecCCCCCCCCCCCCCCCCCCCCceeecC
Q 032417 71 LDCSKDAVNELHLCFYKD--FKPRDCIIERSPENDNYFSSSSCPKYVSLPV 119 (141)
Q Consensus 71 l~C~~~~L~EV~iC~~~~--~~~~~Cp~~~~~~~~~~~~~~~Cp~~i~~p~ 119 (141)
|+|.++.|.||+|||+++ +++++|+.. ..+.||..|.||+
T Consensus 180 l~C~~~~L~Ev~ic~~~~g~~~~~~~~~~---------~~~~C~~~i~~pp 221 (222)
T 1bol_A 180 IDCSSGTLSDVALYFYVRGRDTYVITDAL---------STGSCSGDVEYPT 221 (222)
T ss_dssp EEEETTEEEEEEEEEEEETTTEEEEECCS---------CCCSCCSEEEECC
T ss_pred EEECCCEEeEEEEEEEcCCCCCeEECCCC---------CCCCCCCCeEeCC
Confidence 999999999999999998 478998753 3578999999986
No 10
>3t0o_A Ribonuclease T2, ribonuclease 6; rnaset2, alpha/beta fold, RNA cleavage, hydrol; HET: NAG; 1.59A {Homo sapiens}
Probab=99.96 E-value=5.5e-30 Score=202.50 Aligned_cols=122 Identities=25% Similarity=0.509 Sum_probs=97.7
Q ss_pred CcchhccccccCCCC--CCCHHHHHHHHHHhhhhcchhHHHHhcCCCCCCCcccchHHHHHHHHHHhCCCceEEecCC--
Q 032417 1 MHWQWEKHGTCSFPV--VRDEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSKD-- 76 (141)
Q Consensus 1 ~~hEW~KHGTCs~~~--~~~~~~YF~~a~~L~~k~ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~g~~p~l~C~~~-- 76 (141)
|+|||+|||||++.+ +.++.+||++|++|++++|++++|+++||+|+.. +|++++|++||++++|..|.|+|.++
T Consensus 87 W~hEW~KHGTC~~~~~~~~~q~~YF~~a~~L~~~~n~~~~L~~~gI~P~~~-~yt~~~I~~Ai~~~~g~~P~l~C~~~~~ 165 (238)
T 3t0o_A 87 WKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSIN-YYQVADFKDALARVYGVIPKIQCLPPSQ 165 (238)
T ss_dssp HHHHCCCCCHHHTTSGGGCSHHHHHHHHHHHHHHHCHHHHHHHTTCCCCSS-CEEHHHHHHHHHHHHSSCCEEEEECCC-
T ss_pred HHHhhhcCceecCCccccccHHHHHHHHHHHHHHcccHHHHHhcCccCCCC-cccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 579999999999862 3489999999999999999999999999999854 89999999999999999999999741
Q ss_pred -----CcceEEEEEeC-CCceecCCCCCCCCC-----------CCCCCCCCCCCc-eeecCCccC
Q 032417 77 -----AVNELHLCFYK-DFKPRDCIIERSPEN-----------DNYFSSSSCPKY-VSLPVYMSS 123 (141)
Q Consensus 77 -----~L~EV~iC~~~-~~~~~~Cp~~~~~~~-----------~~~~~~~~Cp~~-i~~p~~~~~ 123 (141)
.|.||+||||+ ++++|+||....... ........|.+. |.+||.++.
T Consensus 166 ~~~~~~L~EV~iC~d~~~~~~idCp~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 230 (238)
T 3t0o_A 166 DEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRVCEDGPVFYPPPKKT 230 (238)
T ss_dssp --CCCEEEEEEEEEETTTCCEECCC--------------------CTTCEECCSSEEBCCCCC--
T ss_pred CCcccEEEEEEEEeecCCCEEecCCCCCCCCccccccccccccccCCceeecCCCCccCCCCccc
Confidence 59999999999 678999998522110 012345789866 888887653
No 11
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A*
Probab=99.94 E-value=2.4e-27 Score=187.42 Aligned_cols=109 Identities=17% Similarity=0.278 Sum_probs=87.3
Q ss_pred CcchhccccccCCCCCCCHHHHHHHHHHhhhhcchh---HHHHhcCCCCCCCcccchHHHHHHHHHHhCCCc----eEEe
Q 032417 1 MHWQWEKHGTCSFPVVRDEYSYFSTTLNLYFKYNVT---RVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATP----KLDC 73 (141)
Q Consensus 1 ~~hEW~KHGTCs~~~~~~~~~YF~~a~~L~~k~ni~---~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~g~~p----~l~C 73 (141)
|+|||+|||||++ .++.+||++|++|++++|++ ++|+.. .+++|++++|++||++++|..| .|.|
T Consensus 126 w~hEW~KHGTC~~---~~~~~YF~~a~~l~~~~n~~~~~~~l~~~-----~g~~~t~~~I~~Ai~~~~g~~p~~~v~l~C 197 (245)
T 2pqx_A 126 ERYEYAKHGACFG---FDPDAYFGTMVRLNQEIKESEAGKFLADN-----YGKTVSRRDFDAAFAKSWGKENVKAVKLTC 197 (245)
T ss_dssp HHHHHHHHTGGGT---CCHHHHHHHHHHHHHHHHHSHHHHHHHHT-----TTSEEEHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred HHHHhhhCCeecC---CCHHHHHHHHHHHHHHhccchHHHHhhcC-----CCceEcHHHHHHHHHHHhCCCCCcceEEEE
Confidence 5799999999999 49999999999999999875 457762 3679999999999999999875 9999
Q ss_pred cCC--CcceEEEEEeCCCceecCCCC-CCCCCCCCCCCCCCCCceeecCCc
Q 032417 74 SKD--AVNELHLCFYKDFKPRDCIIE-RSPENDNYFSSSSCPKYVSLPVYM 121 (141)
Q Consensus 74 ~~~--~L~EV~iC~~~~~~~~~Cp~~-~~~~~~~~~~~~~Cp~~i~~p~~~ 121 (141)
.++ +|.||+|||++++ ++|+.. ..+...| ..++||+.|.||++.
T Consensus 198 ~~~~~~L~Ev~iC~~~~~--~~~~~~~~~~i~cp--~~~~C~~~~~~~~~g 244 (245)
T 2pqx_A 198 QGNPAYLTEIQISIKADA--INAPLSANSFLPQP--HPGNCGKTFVIDKAG 244 (245)
T ss_dssp ETTTTEEEEEEEEEEGGG--TTSCCCTTSBCCCS--CCBSCCSEEECCCSC
T ss_pred CCCCCEEEEEEEEEcccc--cCCCccccccccCC--CCCCCCCCeEeCCCC
Confidence 987 8999999999985 344322 0011111 246899999999874
No 12
>4dvk_A E(RNS) glycoprotein; T2 ribonuclease, virus envelope glycoprotein, viral protein; HET: NAG BMA MAN; 2.21A {Bovine viral diarrhea virus} PDB: 4dw5_A* 4dvl_A* 4dvn_A* 4dw3_A* 4dw4_A* 4dwc_A* 4dwa_A* 4dw7_A*
Probab=98.60 E-value=4.6e-09 Score=78.26 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=22.4
Q ss_pred CcchhccccccCCCCCCCHHHHHHHHHHh
Q 032417 1 MHWQWEKHGTCSFPVVRDEYSYFSTTLNL 29 (141)
Q Consensus 1 ~~hEW~KHGTCs~~~~~~~~~YF~~a~~L 29 (141)
|+|||+|||||+. .+|.+||.++...
T Consensus 72 WeHEWnKHGTCS~---ynQe~YFdL~~~a 97 (165)
T 4dvk_A 72 QRHEWNKHGWCNW---YNIEPWILLMNKT 97 (165)
T ss_dssp HHHHHHHHTHHHH---SSHHHHHHHHHHH
T ss_pred HHHHHHcCCccCC---CCHHHHHHHHHHH
Confidence 5899999999997 4999999987544
No 13
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Probab=85.41 E-value=0.45 Score=38.30 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=32.2
Q ss_pred chhHHHHhcCCCCCCCcccchHHHHHHHHHHhCCCc
Q 032417 34 NVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAFHATP 69 (141)
Q Consensus 34 ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~g~~p 69 (141)
.-.++|+++|+.|.+++.++..++..|+.+.+|..+
T Consensus 31 PgLNaLANHGyLpR~G~nit~~~l~~al~~~~n~~~ 66 (299)
T 2ciw_A 31 PALNALANHGYIPHDGRAISRETLQNAFLNHMGIAN 66 (299)
T ss_dssp HHHHHHHHTTSSCTTCEEECHHHHHHHHHHHHCBCH
T ss_pred HHHHHHHhcCCcCCCCCccCHHHHHHHHHHhcCCCH
Confidence 456889999999999988999999999999998754
No 14
>3oqg_A HPY188I; endonuclease-DNA complex, restriction enzyme, HPY188I, inter GIY-YIG nuclease, catalytic mechanism; HET: DNA; 1.75A {Helicobacter pylori} PDB: 3or3_A
Probab=59.59 E-value=3.1 Score=29.79 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=16.2
Q ss_pred chhccccccCCCCCCCHHHHHHHHHHh
Q 032417 3 WQWEKHGTCSFPVVRDEYSYFSTTLNL 29 (141)
Q Consensus 3 hEW~KHGTCs~~~~~~~~~YF~~a~~L 29 (141)
-||+|.|||+. ..||-...-|
T Consensus 103 ~~yrkngtc~t------tnyfvlqsll 123 (180)
T 3oqg_A 103 VEYRKNGTCST------TNYFVLQSLL 123 (180)
T ss_dssp HHHHHHTCSCH------HHHHHHHHHH
T ss_pred eeeecCCcccc------chHHHHHHHH
Confidence 58999999998 5899654433
No 15
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=36.63 E-value=42 Score=22.64 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=25.1
Q ss_pred CcccchHHHHHHHHHHhCCCceEEecCC
Q 032417 49 TEKYPLGGIVSAIQNAFHATPKLDCSKD 76 (141)
Q Consensus 49 ~~~~t~~~I~~ai~~~~g~~p~l~C~~~ 76 (141)
..+++.++++.-++.+||....|.|.++
T Consensus 25 ~RPv~f~eL~~Kv~~~fGq~ldL~y~n~ 52 (103)
T 2cu1_A 25 PRPVKLEDLRSKAKIAFGQSMDLHYTNN 52 (103)
T ss_dssp ESSCCHHHHHHHHHHHHSSCEEEEECSS
T ss_pred cCCccHHHHHHHHHHHhCCeeeEEEecc
Confidence 3578999999999999999999999875
No 16
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=22.92 E-value=57 Score=25.32 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=26.9
Q ss_pred chhHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 032417 34 NVTRVLNEAGYLPSNTEKYPLGGIVSAIQNA 64 (141)
Q Consensus 34 ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~ 64 (141)
++.+++.+.-|.|.....|+...|++|++++
T Consensus 112 ~Ii~~Ia~~~VnP~T~~P~p~~~IE~Am~e~ 142 (252)
T 2kdo_A 112 DIATIVADKCVNPETKRPYTVILIERAMKDI 142 (252)
T ss_dssp HHHHHHHTTEECCTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCCCCHHHHHHHHHhC
Confidence 4667788888999988999999999999975
No 17
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=21.00 E-value=82 Score=19.44 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHhhhhcchhHHHHhcCCCCCCCcccchHHHHHHHHHHh-CC
Q 032417 18 DEYSYFSTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNAF-HA 67 (141)
Q Consensus 18 ~~~~YF~~a~~L~~k~ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~~-g~ 67 (141)
+..++......+.+..|+ .++|..+|.+.+.+.| |.
T Consensus 13 sd~ei~~~I~~IL~~aDL--------------~tvT~K~VR~~Le~~~pg~ 49 (70)
T 1q1v_A 13 TDEELKETIKKLLASANL--------------EEVTMKQICKKVYENYPTY 49 (70)
T ss_dssp CHHHHHHHHHHHHTTSCG--------------GGCCHHHHHHHHHHHCSSS
T ss_pred CHHHHHHHHHHHHHhCCH--------------HHHhHHHHHHHHHHHccCC
Confidence 445565555554444433 4678899999999988 64
No 18
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.87 E-value=54 Score=25.47 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=27.8
Q ss_pred cchhHHHHhcCCCCCCCcccchHHHHHHHHHH
Q 032417 33 YNVTRVLNEAGYLPSNTEKYPLGGIVSAIQNA 64 (141)
Q Consensus 33 ~ni~~~L~~~gI~Ps~~~~~t~~~I~~ai~~~ 64 (141)
-++.+++.+.-|.|.....|+...|++|++++
T Consensus 122 r~Ii~~Ia~~~VnP~T~~P~p~~~IE~Am~e~ 153 (252)
T 2wbm_A 122 LKIINKIAREAINPQNGLPHPPKRIEKAMEEA 153 (252)
T ss_dssp HHHHHHHHHHEECTTTCCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHhC
Confidence 35677788888999988999999999999975
No 19
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=20.57 E-value=1.3e+02 Score=20.28 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHhhhhcchhHHH---HhcCCCCCCCcccchHHHHHHHHHHhCCCceEEecCCCc
Q 032417 17 RDEYSYFSTTLNLYFKYNVTRVL---NEAGYLPSNTEKYPLGGIVSAIQNAFHATPKLDCSKDAV 78 (141)
Q Consensus 17 ~~~~~YF~~a~~L~~k~ni~~~L---~~~gI~Ps~~~~~t~~~I~~ai~~~~g~~p~l~C~~~~L 78 (141)
..+.-||.-...-.++-++---+ .+.-|.+- ..++..++++.-.+.+||..-.+.|.++.|
T Consensus 14 ~~~~~~~k~~~~~~~q~dvRIKfE~~gEKRIiqf-~RPvkf~dl~qkv~~afGq~ldl~y~nnEL 77 (111)
T 2c60_A 14 GTENLYFQSMGHSNRQSDVRIKFEHNGERRIIAF-SRPVKYEDVEHKVTTVFGQPLDLHYMNNEL 77 (111)
T ss_dssp CTTTC-----------CCEEEEEEETTEEEEEEE-CSSCCHHHHHHHHHHHHSSCCEEEEECSSC
T ss_pred CccceeeecCCCcccccceEEEEEecCceEEEec-CCCccHHHHHHHHHHHhCCeeeeEEecceE
Confidence 45667887654343443332111 22335553 578999999999999999988888877643
Done!