BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032418
MAIMAAATVATVVARPLSLTLVSRRRSRWGFSPLAYSSSSSSSSSSTRKLVLYSKPGCCL
CDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEEALP
RLSPRIGVELIQKKIAAALRQ

High Scoring Gene Products

Symbol, full name Information P value
AT4G08280 protein from Arabidopsis thaliana 3.5e-36
YDR286C
Putative protein of unknown function 		gene from Saccharomyces cerevisiae 2.4e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032418
        (141 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2132517 - symbol:AT4G08280 "AT4G08280" species...   390  3.5e-36   1
SGD|S000002694 - symbol:YDR286C "Putative protein of unkn...    99  2.4e-05   1


>TAIR|locus:2132517 [details] [associations]
            symbol:AT4G08280 "AT4G08280" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0010207 "photosystem II assembly" evidence=RCA]
            EMBL:CP002687 Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833
            InterPro:IPR008554 Pfam:PF05768 EMBL:AF378891 EMBL:AY050479
            IPI:IPI00530967 RefSeq:NP_567336.1 UniGene:At.3542
            ProteinModelPortal:Q93WH0 STRING:Q93WH0 PaxDb:Q93WH0 PRIDE:Q93WH0
            EnsemblPlants:AT4G08280.1 GeneID:826382 KEGG:ath:AT4G08280
            eggNOG:NOG315732 OMA:ERAYQYE ProtClustDB:CLSN2917519
            Genevestigator:Q93WH0 Uniprot:Q93WH0
        Length = 126

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 76/93 (81%), Positives = 82/93 (88%)

Query:    47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLS-GPDSLHDVDLQVRDITTNPEWEKSYQYEIP 105
             TRKLVLYSKPGCCLCDGLKEKL AAF LS GPDSL+DV LQVRDITTNPEWE++YQYEIP
Sbjct:    32 TRKLVLYSKPGCCLCDGLKEKLHAAFTLSTGPDSLNDVTLQVRDITTNPEWERAYQYEIP 91

Query:   106 VLARVLSDGTEEALPRLSPRIGVELIQKKIAAA 138
             VLA+  SDG EE LPRLSPR+  ELIQKK+ AA
Sbjct:    92 VLAKENSDGKEEVLPRLSPRLSAELIQKKLLAA 124


>SGD|S000002694 [details] [associations]
            symbol:YDR286C "Putative protein of unknown function"
            species:4932 "Saccharomyces cerevisiae" [GO:0008150
            "biological_process" evidence=ND] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0022900 "electron transport chain" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] SGD:S000002694
            EMBL:BK006938 Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833
            GO:GO:0022900 eggNOG:COG0526 EMBL:U51031 RefSeq:NP_010577.3
            GeneID:851885 KEGG:sce:YDR291W KO:K06877 InterPro:IPR008554
            Pfam:PF05768 RefSeq:NP_010572.3 GeneID:851880 KEGG:sce:YDR286C
            EMBL:AY557722 PIR:S70116 ProteinModelPortal:Q05530 SMR:Q05530
            DIP:DIP-5468N IntAct:Q05530 MINT:MINT-516547 STRING:Q05530
            EnsemblFungi:YDR286C CYGD:YDR286c HOGENOM:HOG000207094 OMA:QAKPVKF
            OrthoDB:EOG4N8VFF NextBio:969847 Genevestigator:Q05530
            GermOnline:YDR286C Uniprot:Q05530
        Length = 114

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query:    49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD--VDLQVRDITT--NPEWEKSYQYEI 104
             KL  +SKP C LCD  KE +   F        H+  V L++ +IT   N +W K Y ++I
Sbjct:    22 KLTFFSKPNCGLCDQAKEVIDDVFERK---EFHNKAVSLEIVNITDRRNAKWWKEYCFDI 78

Query:   105 PVL 107
             PVL
Sbjct:    79 PVL 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      141       107   0.00091  102 3  11 22  0.43    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.99u 0.14s 11.13t   Elapsed:  00:00:01
  Total cpu time:  10.99u 0.14s 11.13t   Elapsed:  00:00:01
  Start:  Sat May 11 04:33:57 2013   End:  Sat May 11 04:33:58 2013

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