BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032418
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WJK|A Chain A, Solution Structure Of Hypothetical Protein C330018d20rik
From Mus Musculus
Length = 100
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 21/86 (24%)
Query: 50 LVLYSKPGCCLCDGLKEKLQA---AFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPV 106
L L++K C LCD KE LQ F+L +VD+ + + +T W + Y+++IPV
Sbjct: 19 LTLFTKAPCPLCDEAKEVLQPYKDRFIL------QEVDITLPENST---WYERYKFDIPV 69
Query: 107 ---------LARVLSDGTEEALPRLS 123
+ RV + E+ L +LS
Sbjct: 70 FHLNGQFLMMHRVNTSKLEKQLRKLS 95
>pdb|2FGX|A Chain A, Solution Nmr Structure Of Protein Ne2328 From Nitrosomonas
Europaea. Northeast Structural Genomics Consortium
Target Net3
Length = 107
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVL 107
RKLV+Y + GC LC E++ A+ + S +L+V +I N + Y +PVL
Sbjct: 30 RKLVVYGREGCHLC----EEMIASLRVLQKKSW--FELEVINIDGNEHLTRLYNDRVPVL 83
Query: 108 ARVLSD 113
V D
Sbjct: 84 FAVNED 89
>pdb|2CN3|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN3|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 95 EW----EKSYQYEIPVLARVLSD-GTEEALPRLSPRIG 127
EW E+ YEI + A D GTE+ LP ++P++G
Sbjct: 345 EWGMYPERILHYEIDISAAPWLDWGTEKQLPEINPKLG 382
>pdb|2CN2|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|C Chain C, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|D Chain D, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 95 EW----EKSYQYEIPVLARVLSD-GTEEALPRLSPRIG 127
EW E+ YEI + A D GTE+ LP ++P++G
Sbjct: 345 EWGXYPERILHYEIDISAAPWLDWGTEKQLPEINPKLG 382
>pdb|2EPG|A Chain A, Crystal Structure Of Ttha1785
pdb|2EPG|B Chain B, Crystal Structure Of Ttha1785
Length = 487
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 109 RVLSDGTEEALPRLSPRIGVELIQKKIAAA 138
+V D E L +++PR G+EL+ K++AAA
Sbjct: 255 QVCQDYVERFL-KVAPRYGIELVDKQLAAA 283
>pdb|3UP6|A Chain A, Crystal Structure Of A Hypothetical Protein Bacova_04078
[bacteroides Ovatus Atcc 8483] (Zp_02067074.1,
Sp17169a, Jcsg 417104) From Bacteroides Ovatus Atcc
8483 At 2.80 A Resolution
pdb|3UP6|B Chain B, Crystal Structure Of A Hypothetical Protein Bacova_04078
[bacteroides Ovatus Atcc 8483] (Zp_02067074.1,
Sp17169a, Jcsg 417104) From Bacteroides Ovatus Atcc
8483 At 2.80 A Resolution
Length = 347
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE 95
R +V S PG G++ + LLS P++ D+D Q+ ++T++ +
Sbjct: 36 RFIVFGSTPG-----GVRLDVNEHILLSTPETATDIDAQLLEVTSSND 78
>pdb|1T0G|A Chain A, Hypothetical Protein At2g24940.1 From Arabidopsis Thaliana
Has A Cytochrome B5 Like Fold
Length = 109
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 85 LQVRDITTNPEWEKSYQYEIPVLARVLS 112
L ++I T +WE ++ + PV+ RV+S
Sbjct: 82 LTEKEINTLNDWETKFEAKYPVVGRVVS 109
>pdb|1J03|A Chain A, Solution Structure Of A Putative Steroid-Binding Protein
From Arabidopsis
Length = 102
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 85 LQVRDITTNPEWEKSYQYEIPVLARVLS 112
L ++I T +WE ++ + PV+ RV+S
Sbjct: 75 LTEKEINTLNDWETKFEAKYPVVGRVVS 102
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 77 PDSLHDVDLQVRDITTNPEWEKSYQYE 103
PD H ++ +V+ NP W +++ +E
Sbjct: 57 PDKKHKLETKVKRKNLNPHWNETFLFE 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,061,631
Number of Sequences: 62578
Number of extensions: 107997
Number of successful extensions: 327
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 16
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)