BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032418
         (141 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q05530|YD286_YEAST Glutaredoxin-like protein YDR286C OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=YDR286C PE=3 SV=1
          Length = 114

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 49  KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD--VDLQVRDITT--NPEWEKSYQYEI 104
           KL  +SKP C LCD  KE +   F        H+  V L++ +IT   N +W K Y ++I
Sbjct: 22  KLTFFSKPNCGLCDQAKEVIDDVF---ERKEFHNKAVSLEIVNITDRRNAKWWKEYCFDI 78

Query: 105 PVL 107
           PVL
Sbjct: 79  PVL 81


>sp|Q9CWB7|YD286_MOUSE Glutaredoxin-like protein C5orf63 homolog OS=Mus musculus PE=1 SV=1
          Length = 115

 Score = 34.7 bits (78), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 15/95 (15%)

Query: 41  SSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY 100
           S+S+ +   L L++K  C LCD  KE LQ          L +VD+ + +   N  W + Y
Sbjct: 23  SASNRALPVLTLFTKAPCPLCDEAKEVLQPY---KDRFILQEVDITLPE---NSTWYERY 76

Query: 101 QYEIPV---------LARVLSDGTEEALPRLSPRI 126
           +++IPV         + RV +   E+ L +L  ++
Sbjct: 77  KFDIPVFHLNGQFLMMHRVNTSKLEKQLRKLEQQV 111


>sp|Q05266|VG56_BPML5 Gene 56 protein OS=Mycobacterium phage L5 GN=56 PE=4 SV=1
          Length = 103

 Score = 32.3 bits (72), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 13/58 (22%)

Query: 50  LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVL 107
           + +Y++PGC  C+ +K+KL AA           +D    D+T N E   +Y Y   VL
Sbjct: 21  VTVYTRPGCKPCERVKDKLTAA----------GIDFDAVDVTANSE---AYDYVTKVL 65


>sp|O74802|HIBCH_SCHPO 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=ehd3 PE=3 SV=1
          Length = 429

 Score = 32.0 bits (71), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 72  FLLSGPDSLHDVDLQVRDITTNPEWEKSYQY 102
           ++L  PD +  V+ Q+   T NP+W KS++Y
Sbjct: 359 YMLKQPDFVEGVNAQLITKTKNPKWSKSHEY 389


>sp|Q88V55|SPX_LACPL Regulatory protein spx OS=Lactobacillus plantarum (strain ATCC
           BAA-793 / NCIMB 8826 / WCFS1) GN=spxA PE=3 SV=1
          Length = 132

 Score = 29.3 bits (64), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 16/71 (22%)

Query: 50  LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-EWEKSYQYEIPVLA 108
           ++LY+ P C  C   K  LQ           HD+D Q  ++ T P   EK     I  + 
Sbjct: 2   VILYTAPSCTSCRKAKAWLQT----------HDIDFQEHNLFTEPLSIEK-----IKQIL 46

Query: 109 RVLSDGTEEAL 119
           ++   GTEE +
Sbjct: 47  QLTESGTEEII 57


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.129    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,686,129
Number of Sequences: 539616
Number of extensions: 1728028
Number of successful extensions: 8996
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8957
Number of HSP's gapped (non-prelim): 38
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)