Query 032418
Match_columns 141
No_of_seqs 112 out of 1029
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 13:50:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05768 DUF836: Glutaredoxin- 99.8 3.7E-19 7.9E-24 122.6 9.1 74 49-135 1-80 (81)
2 TIGR02190 GlrX-dom Glutaredoxi 99.6 1.1E-14 2.3E-19 99.3 8.6 63 42-117 2-68 (79)
3 PRK11200 grxA glutaredoxin 1; 99.6 3.5E-14 7.7E-19 97.4 9.3 63 48-118 1-70 (85)
4 TIGR02189 GlrX-like_plant Glut 99.5 5.4E-15 1.2E-19 105.8 5.0 79 46-137 6-93 (99)
5 TIGR02194 GlrX_NrdH Glutaredox 99.5 1.1E-14 2.4E-19 97.3 5.6 64 50-126 1-68 (72)
6 PRK10329 glutaredoxin-like pro 99.5 5.9E-14 1.3E-18 97.3 9.3 58 48-118 1-62 (81)
7 cd02973 TRX_GRX_like Thioredox 99.5 5.7E-14 1.2E-18 91.4 8.0 65 49-121 2-67 (67)
8 COG0695 GrxC Glutaredoxin and 99.5 2.8E-14 6E-19 98.8 6.5 63 48-123 1-70 (80)
9 cd03029 GRX_hybridPRX5 Glutare 99.5 1.7E-13 3.8E-18 91.0 8.1 57 49-118 2-62 (72)
10 TIGR02183 GRXA Glutaredoxin, G 99.5 3.7E-13 8E-18 93.4 9.6 60 50-117 2-68 (86)
11 PHA03050 glutaredoxin; Provisi 99.5 1.1E-13 2.5E-18 100.9 6.3 77 47-136 12-100 (108)
12 PF00462 Glutaredoxin: Glutare 99.5 2E-13 4.4E-18 87.9 6.3 55 50-117 1-60 (60)
13 cd03027 GRX_DEP Glutaredoxin ( 99.4 1.9E-13 4E-18 91.2 5.9 58 49-119 2-64 (73)
14 PRK10638 glutaredoxin 3; Provi 99.4 4.8E-13 1E-17 91.6 7.5 59 47-118 1-64 (83)
15 cd03418 GRX_GRXb_1_3_like Glut 99.4 5.4E-13 1.2E-17 88.2 7.2 57 49-118 1-63 (75)
16 TIGR02181 GRX_bact Glutaredoxi 99.4 1.9E-13 4E-18 92.0 5.0 56 50-118 1-61 (79)
17 TIGR00411 redox_disulf_1 small 99.4 2.3E-12 5E-17 85.7 9.9 80 49-139 2-82 (82)
18 TIGR02200 GlrX_actino Glutared 99.4 3.4E-12 7.4E-17 83.8 8.3 70 49-136 1-76 (77)
19 TIGR02196 GlrX_YruB Glutaredox 99.3 9.4E-12 2E-16 79.9 8.2 56 49-117 1-61 (74)
20 cd02066 GRX_family Glutaredoxi 99.3 9.3E-12 2E-16 79.3 6.8 58 49-119 1-63 (72)
21 TIGR00365 monothiol glutaredox 99.3 1.1E-11 2.4E-16 88.3 7.7 60 47-119 11-80 (97)
22 cd03028 GRX_PICOT_like Glutare 99.3 1.5E-11 3.2E-16 86.0 7.5 59 47-118 7-75 (90)
23 PRK10824 glutaredoxin-4; Provi 99.2 1.4E-11 3E-16 91.5 5.8 60 47-119 14-83 (115)
24 cd02976 NrdH NrdH-redoxin (Nrd 99.2 4.5E-11 9.7E-16 76.7 7.5 58 49-119 1-63 (73)
25 PRK12759 bifunctional gluaredo 99.2 1.2E-11 2.6E-16 107.7 5.9 59 47-118 1-72 (410)
26 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 9.6E-11 2.1E-15 82.4 8.4 66 48-121 14-80 (89)
27 TIGR00412 redox_disulf_2 small 99.2 7.8E-11 1.7E-15 80.0 7.7 74 48-135 1-75 (76)
28 cd03419 GRX_GRXh_1_2_like Glut 99.2 3.7E-11 7.9E-16 80.2 5.6 56 49-117 1-64 (82)
29 cd02975 PfPDO_like_N Pyrococcu 99.2 1.3E-10 2.9E-15 84.1 8.8 86 49-140 25-111 (113)
30 TIGR02180 GRX_euk Glutaredoxin 99.2 4E-11 8.6E-16 80.0 5.6 56 50-118 1-66 (84)
31 KOG0910 Thioredoxin-like prote 99.2 1.3E-10 2.9E-15 90.2 9.1 90 45-141 60-150 (150)
32 cd02949 TRX_NTR TRX domain, no 99.1 1.4E-09 3.1E-14 75.6 8.9 82 47-135 14-96 (97)
33 cd03031 GRX_GRX_like Glutaredo 99.1 3E-10 6.4E-15 87.4 5.9 64 49-125 1-79 (147)
34 PF00085 Thioredoxin: Thioredo 99.0 3.6E-09 7.7E-14 71.9 9.8 85 46-137 17-102 (103)
35 TIGR01295 PedC_BrcD bacterioci 99.0 1.2E-09 2.7E-14 80.6 7.5 80 48-136 25-121 (122)
36 PHA02125 thioredoxin-like prot 99.0 2.2E-09 4.7E-14 72.4 7.3 71 50-136 2-74 (75)
37 PTZ00062 glutaredoxin; Provisi 99.0 1.1E-09 2.5E-14 88.1 6.2 60 47-119 112-181 (204)
38 PHA02278 thioredoxin-like prot 99.0 5.4E-09 1.2E-13 75.4 9.0 81 46-133 14-99 (103)
39 PRK09381 trxA thioredoxin; Pro 99.0 8.9E-09 1.9E-13 72.3 9.7 88 46-140 21-109 (109)
40 KOG1752 Glutaredoxin and relat 98.9 1.6E-09 3.6E-14 79.3 5.1 61 46-119 12-80 (104)
41 cd02965 HyaE HyaE family; HyaE 98.9 1.3E-08 2.9E-13 75.3 8.6 83 44-133 25-110 (111)
42 cd02954 DIM1 Dim1 family; Dim1 98.9 1.5E-08 3.2E-13 75.2 8.8 67 47-118 15-82 (114)
43 cd02956 ybbN ybbN protein fami 98.9 3.1E-08 6.7E-13 67.8 9.6 83 46-135 12-95 (96)
44 PF13192 Thioredoxin_3: Thiore 98.9 1E-08 2.3E-13 69.4 7.0 74 48-135 1-75 (76)
45 PRK10996 thioredoxin 2; Provis 98.9 2.6E-08 5.7E-13 74.4 9.6 86 47-139 53-139 (139)
46 PLN00410 U5 snRNP protein, DIM 98.8 4.4E-08 9.5E-13 75.2 10.6 87 47-140 24-121 (142)
47 cd02963 TRX_DnaJ TRX domain, D 98.8 1.6E-08 3.4E-13 72.5 7.7 87 45-137 23-110 (111)
48 TIGR01068 thioredoxin thioredo 98.8 3.8E-08 8.3E-13 66.4 9.0 85 47-138 15-100 (101)
49 cd02947 TRX_family TRX family; 98.8 3.3E-08 7.2E-13 64.3 8.3 81 47-135 11-92 (93)
50 TIGR02187 GlrX_arch Glutaredox 98.8 2.5E-08 5.5E-13 79.1 9.1 78 48-136 135-213 (215)
51 TIGR01126 pdi_dom protein disu 98.8 4.5E-08 9.8E-13 66.5 8.2 88 46-138 13-101 (102)
52 COG3118 Thioredoxin domain-con 98.8 2.8E-08 6E-13 84.6 8.5 87 46-139 43-130 (304)
53 TIGR02187 GlrX_arch Glutaredox 98.8 6.7E-08 1.4E-12 76.6 9.9 87 46-139 19-111 (215)
54 cd02989 Phd_like_TxnDC9 Phosdu 98.8 5.5E-08 1.2E-12 70.5 8.5 66 47-118 23-89 (113)
55 cd03003 PDI_a_ERdj5_N PDIa fam 98.8 8.8E-08 1.9E-12 66.5 9.0 80 47-133 19-99 (101)
56 cd02994 PDI_a_TMX PDIa family, 98.7 5.4E-08 1.2E-12 67.3 7.6 81 49-136 19-100 (101)
57 cd02948 TRX_NDPK TRX domain, T 98.7 7.2E-08 1.6E-12 67.9 7.9 84 46-137 17-101 (102)
58 cd03065 PDI_b_Calsequestrin_N 98.7 1.1E-07 2.3E-12 70.8 8.9 88 47-140 28-120 (120)
59 cd02953 DsbDgamma DsbD gamma f 98.7 6.5E-08 1.4E-12 67.5 7.3 82 47-135 12-103 (104)
60 cd02977 ArsC_family Arsenate R 98.7 2E-08 4.3E-13 71.5 4.7 76 50-137 1-85 (105)
61 cd02950 TxlA TRX-like protein 98.7 1.7E-07 3.7E-12 70.5 9.5 89 46-140 20-111 (142)
62 cd02957 Phd_like Phosducin (Ph 98.7 2.1E-07 4.5E-12 66.6 9.5 82 47-135 25-112 (113)
63 cd02985 TRX_CDSP32 TRX family, 98.7 1.7E-07 3.6E-12 66.2 8.8 81 46-135 15-99 (103)
64 cd03004 PDI_a_ERdj5_C PDIa fam 98.7 1.3E-07 2.8E-12 65.7 7.8 80 47-133 20-102 (104)
65 cd03036 ArsC_like Arsenate Red 98.7 3.1E-08 6.7E-13 71.9 4.8 35 50-94 1-35 (111)
66 cd02984 TRX_PICOT TRX domain, 98.6 1.7E-07 3.7E-12 63.9 7.8 82 46-135 14-96 (97)
67 cd02951 SoxW SoxW family; SoxW 98.6 2E-07 4.3E-12 67.2 8.5 88 47-140 15-120 (125)
68 cd03040 GST_N_mPGES2 GST_N fam 98.6 3.1E-07 6.8E-12 60.9 7.9 49 49-108 1-52 (77)
69 cd03041 GST_N_2GST_N GST_N fam 98.6 5E-07 1.1E-11 60.7 8.6 49 50-108 2-55 (77)
70 KOG0907 Thioredoxin [Posttrans 98.6 2.5E-07 5.5E-12 67.5 7.6 82 47-137 22-104 (106)
71 TIGR03143 AhpF_homolog putativ 98.6 2.6E-07 5.6E-12 82.7 9.2 76 48-135 478-554 (555)
72 cd02999 PDI_a_ERp44_like PDIa 98.6 2.2E-07 4.7E-12 65.8 6.7 82 44-134 16-99 (100)
73 PTZ00443 Thioredoxin domain-co 98.6 5.9E-07 1.3E-11 73.2 10.0 88 46-140 52-140 (224)
74 cd02961 PDI_a_family Protein D 98.6 5.1E-07 1.1E-11 60.0 7.9 81 48-133 17-99 (101)
75 TIGR01617 arsC_related transcr 98.5 2.3E-07 5E-12 67.6 6.6 76 50-137 1-86 (117)
76 PRK01655 spxA transcriptional 98.5 1.3E-07 2.9E-12 70.8 4.9 35 50-94 2-36 (131)
77 cd03005 PDI_a_ERp46 PDIa famil 98.5 3.1E-07 6.7E-12 62.8 6.3 82 48-134 18-101 (102)
78 cd03001 PDI_a_P5 PDIa family, 98.5 9.4E-07 2E-11 60.5 8.7 82 47-134 19-101 (103)
79 PTZ00051 thioredoxin; Provisio 98.5 6.7E-07 1.4E-11 61.2 7.7 65 47-117 19-84 (98)
80 cd03002 PDI_a_MPD1_like PDI fa 98.5 9.5E-07 2.1E-11 61.4 8.4 84 47-135 19-108 (109)
81 cd02996 PDI_a_ERp44 PDIa famil 98.5 7.5E-07 1.6E-11 62.6 7.9 85 47-133 19-106 (108)
82 cd02997 PDI_a_PDIR PDIa family 98.5 7.6E-07 1.7E-11 60.9 7.3 82 47-133 18-102 (104)
83 cd00570 GST_N_family Glutathio 98.5 4.8E-07 1E-11 56.2 5.7 55 50-117 1-60 (71)
84 PRK15317 alkyl hydroperoxide r 98.5 7.7E-07 1.7E-11 78.7 9.1 77 48-136 118-195 (517)
85 cd02986 DLP Dim1 family, Dim1- 98.5 2.2E-06 4.8E-11 63.9 10.1 89 46-140 14-112 (114)
86 TIGR03140 AhpF alkyl hydropero 98.4 9.8E-07 2.1E-11 78.2 9.1 79 47-137 118-197 (515)
87 cd03006 PDI_a_EFP1_N PDIa fami 98.4 1.4E-06 2.9E-11 63.9 8.2 80 46-132 29-110 (113)
88 cd02962 TMX2 TMX2 family; comp 98.4 9.2E-07 2E-11 68.1 7.5 68 47-118 48-122 (152)
89 cd03032 ArsC_Spx Arsenate Redu 98.4 4.4E-07 9.6E-12 66.0 5.2 35 50-94 2-36 (115)
90 cd02982 PDI_b'_family Protein 98.4 2.3E-06 5E-11 58.8 8.5 86 46-138 12-102 (103)
91 cd03000 PDI_a_TMX3 PDIa family 98.4 2.6E-06 5.6E-11 59.6 8.0 86 46-137 15-102 (104)
92 cd02987 Phd_like_Phd Phosducin 98.4 3.5E-06 7.7E-11 65.8 9.5 84 47-137 84-173 (175)
93 PF13098 Thioredoxin_2: Thiore 98.4 6.2E-07 1.3E-11 62.8 4.6 88 45-135 4-112 (112)
94 cd03060 GST_N_Omega_like GST_N 98.4 2E-06 4.4E-11 56.5 6.7 55 51-117 2-60 (71)
95 PRK12559 transcriptional regul 98.4 6.6E-07 1.4E-11 67.3 4.9 35 50-94 2-36 (131)
96 PRK13344 spxA transcriptional 98.4 7.4E-07 1.6E-11 67.1 5.2 35 50-94 2-36 (132)
97 cd02998 PDI_a_ERp38 PDIa famil 98.3 4.9E-06 1.1E-10 56.7 8.5 84 47-134 19-104 (105)
98 cd03035 ArsC_Yffb Arsenate Red 98.3 7.6E-07 1.6E-11 64.5 4.2 35 50-94 1-35 (105)
99 cd03059 GST_N_SspA GST_N famil 98.3 4.5E-06 9.7E-11 54.3 6.7 55 50-117 1-59 (73)
100 cd02995 PDI_a_PDI_a'_C PDIa fa 98.2 7.3E-06 1.6E-10 55.9 7.8 83 47-133 19-102 (104)
101 cd03055 GST_N_Omega GST_N fami 98.2 7.7E-06 1.7E-10 56.5 7.9 60 45-117 14-78 (89)
102 cd03045 GST_N_Delta_Epsilon GS 98.2 6.4E-06 1.4E-10 53.8 6.7 55 50-117 1-62 (74)
103 cd02952 TRP14_like Human TRX-r 98.1 1.5E-05 3.2E-10 59.4 8.2 66 47-117 22-103 (119)
104 cd02993 PDI_a_APS_reductase PD 98.1 1.6E-05 3.6E-10 56.3 8.1 66 46-115 21-89 (109)
105 cd03037 GST_N_GRX2 GST_N famil 98.1 8.7E-06 1.9E-10 53.3 5.9 54 51-117 2-59 (71)
106 TIGR02740 TraF-like TraF-like 98.1 2.8E-05 6.1E-10 64.7 10.2 83 46-138 166-263 (271)
107 cd03051 GST_N_GTT2_like GST_N 98.1 1.5E-05 3.2E-10 51.4 6.4 56 50-117 1-63 (74)
108 cd03056 GST_N_4 GST_N family, 98.1 2E-05 4.4E-10 50.9 6.8 55 50-117 1-62 (73)
109 PF13417 GST_N_3: Glutathione 98.1 3.3E-05 7.1E-10 51.4 8.0 68 52-140 1-72 (75)
110 PRK00293 dipZ thiol:disulfide 98.0 2.2E-05 4.8E-10 71.3 8.9 86 48-138 476-569 (571)
111 cd03033 ArsC_15kD Arsenate Red 98.0 5.4E-06 1.2E-10 61.0 3.7 35 50-94 2-36 (113)
112 cd02959 ERp19 Endoplasmic reti 98.0 1.1E-05 2.3E-10 59.0 5.2 69 46-118 19-91 (117)
113 PF13728 TraF: F plasmid trans 98.0 3.5E-05 7.5E-10 62.2 8.5 79 47-135 121-214 (215)
114 PTZ00102 disulphide isomerase; 98.0 3.6E-05 7.7E-10 66.2 9.1 88 47-140 50-139 (477)
115 PRK10026 arsenate reductase; P 98.0 1.4E-05 3.1E-10 61.3 5.1 38 47-94 1-38 (141)
116 TIGR02738 TrbB type-F conjugat 97.9 6.1E-05 1.3E-09 58.0 8.5 86 47-139 51-153 (153)
117 PRK13728 conjugal transfer pro 97.9 5.6E-05 1.2E-09 60.2 8.4 85 49-140 72-172 (181)
118 TIGR01130 ER_PDI_fam protein d 97.9 5.7E-05 1.2E-09 63.9 8.8 90 47-139 19-109 (462)
119 PF14595 Thioredoxin_9: Thiore 97.9 4.6E-06 9.9E-11 62.6 1.7 72 47-123 42-117 (129)
120 cd01659 TRX_superfamily Thiore 97.9 4.8E-05 1.1E-09 44.5 5.5 54 50-108 1-58 (69)
121 PRK15412 thiol:disulfide inter 97.8 0.00017 3.7E-09 55.9 9.3 86 46-140 68-177 (185)
122 PLN02309 5'-adenylylsulfate re 97.8 8.3E-05 1.8E-09 66.5 8.5 88 45-138 364-456 (457)
123 cd03034 ArsC_ArsC Arsenate Red 97.8 2.5E-05 5.4E-10 56.8 4.3 75 50-136 1-83 (112)
124 COG4545 Glutaredoxin-related p 97.8 5E-05 1.1E-09 53.7 5.6 56 51-118 5-77 (85)
125 PTZ00102 disulphide isomerase; 97.8 8.2E-05 1.8E-09 64.0 8.0 89 47-139 376-465 (477)
126 TIGR00014 arsC arsenate reduct 97.8 3E-05 6.6E-10 56.6 4.5 74 50-137 1-85 (114)
127 COG1393 ArsC Arsenate reductas 97.8 3.6E-05 7.9E-10 57.2 4.8 37 48-94 1-37 (117)
128 PRK11509 hydrogenase-1 operon 97.8 0.00029 6.3E-09 53.6 9.6 87 49-141 37-126 (132)
129 cd02988 Phd_like_VIAF Phosduci 97.8 0.00018 3.9E-09 57.2 8.8 82 47-137 103-190 (192)
130 TIGR00424 APS_reduc 5'-adenyly 97.8 0.00015 3.4E-09 64.9 9.0 86 46-137 371-461 (463)
131 TIGR00385 dsbE periplasmic pro 97.7 0.00025 5.4E-09 54.3 8.9 86 46-140 63-172 (173)
132 PTZ00062 glutaredoxin; Provisi 97.7 0.00021 4.5E-09 57.7 8.6 74 47-137 18-92 (204)
133 cd03030 GRX_SH3BGR Glutaredoxi 97.7 6.3E-05 1.4E-09 53.7 4.1 47 60-119 18-73 (92)
134 cd02992 PDI_a_QSOX PDIa family 97.6 0.0005 1.1E-08 49.6 8.0 66 47-115 20-89 (114)
135 TIGR02739 TraF type-F conjugat 97.5 0.00058 1.3E-08 57.0 9.0 84 47-140 151-249 (256)
136 cd03053 GST_N_Phi GST_N family 97.5 0.00054 1.2E-08 44.9 7.1 55 50-117 2-63 (76)
137 cd02955 SSP411 TRX domain, SSP 97.5 0.00064 1.4E-08 50.7 8.2 69 48-118 17-95 (124)
138 cd03010 TlpA_like_DsbE TlpA-li 97.5 0.00029 6.2E-09 50.4 6.1 67 45-117 24-114 (127)
139 TIGR01616 nitro_assoc nitrogen 97.5 0.00014 3E-09 54.6 4.0 36 49-94 2-37 (126)
140 PRK10853 putative reductase; P 97.4 0.00013 2.8E-09 54.0 3.4 35 50-94 2-36 (118)
141 PRK13703 conjugal pilus assemb 97.4 0.001 2.2E-08 55.4 9.2 83 47-139 144-241 (248)
142 cd03058 GST_N_Tau GST_N family 97.4 0.00077 1.7E-08 44.2 6.6 55 50-117 1-60 (74)
143 PRK03147 thiol-disulfide oxido 97.4 0.00089 1.9E-08 49.9 7.8 89 45-138 60-171 (173)
144 cd03049 GST_N_3 GST_N family, 97.4 0.00083 1.8E-08 43.9 6.7 58 50-117 1-62 (73)
145 COG0278 Glutaredoxin-related p 97.4 0.0005 1.1E-08 50.8 5.9 78 47-137 14-103 (105)
146 cd03052 GST_N_GDAP1 GST_N fami 97.3 0.001 2.2E-08 44.5 6.6 55 50-117 1-62 (73)
147 cd02966 TlpA_like_family TlpA- 97.3 0.00098 2.1E-08 44.5 6.5 69 46-117 19-111 (116)
148 cd03011 TlpA_like_ScsD_MtbDsbE 97.3 0.00095 2.1E-08 47.1 6.7 79 45-134 19-121 (123)
149 PF03960 ArsC: ArsC family; I 97.3 0.00037 8.1E-09 50.1 4.5 73 53-137 1-82 (110)
150 TIGR01130 ER_PDI_fam protein d 97.3 0.00084 1.8E-08 56.8 7.3 87 46-137 364-452 (462)
151 cd02958 UAS UAS family; UAS is 97.2 0.0036 7.7E-08 44.6 8.8 90 47-140 18-112 (114)
152 PRK10387 glutaredoxin 2; Provi 97.2 0.0023 4.9E-08 49.2 8.1 56 50-117 1-59 (210)
153 COG0526 TrxA Thiol-disulfide i 97.2 0.0025 5.4E-08 41.3 7.1 62 50-116 36-101 (127)
154 TIGR02661 MauD methylamine deh 97.2 0.0036 7.8E-08 48.8 9.1 71 45-121 73-164 (189)
155 cd03054 GST_N_Metaxin GST_N fa 97.2 0.00087 1.9E-08 43.8 4.7 45 57-117 15-59 (72)
156 cd03009 TryX_like_TryX_NRX Try 97.1 0.0023 5E-08 46.0 6.7 70 46-117 18-113 (131)
157 PRK14018 trifunctional thiored 97.1 0.0034 7.3E-08 57.2 9.2 87 45-136 55-170 (521)
158 cd03008 TryX_like_RdCVF Trypar 97.1 0.011 2.3E-07 45.4 10.5 73 46-118 25-127 (146)
159 KOG0908 Thioredoxin-like prote 97.1 0.0026 5.6E-08 53.9 7.5 85 46-139 21-106 (288)
160 cd03042 GST_N_Zeta GST_N famil 97.0 0.0033 7.1E-08 40.5 6.4 55 50-117 1-62 (73)
161 PRK09481 sspA stringent starva 97.0 0.003 6.5E-08 49.2 7.1 57 49-118 10-70 (211)
162 cd03061 GST_N_CLIC GST_N famil 97.0 0.0052 1.1E-07 43.9 7.6 50 55-117 19-72 (91)
163 cd03080 GST_N_Metaxin_like GST 97.0 0.0058 1.3E-07 40.5 7.3 51 50-117 2-60 (75)
164 cd02964 TryX_like_family Trypa 96.9 0.0046 1E-07 44.9 7.3 70 46-117 17-113 (132)
165 cd03007 PDI_a_ERp29_N PDIa fam 96.9 0.0076 1.7E-07 44.8 8.3 78 48-136 20-113 (116)
166 PRK15113 glutathione S-transfe 96.9 0.0048 1E-07 48.2 7.5 59 47-118 3-70 (214)
167 cd03048 GST_N_Ure2p_like GST_N 96.9 0.016 3.4E-07 38.5 9.1 48 50-108 2-56 (81)
168 COG2143 Thioredoxin-related pr 96.9 0.005 1.1E-07 49.1 7.4 87 42-131 38-141 (182)
169 cd03044 GST_N_EF1Bgamma GST_N 96.9 0.007 1.5E-07 40.0 7.1 54 51-117 2-62 (75)
170 cd03039 GST_N_Sigma_like GST_N 96.8 0.0039 8.5E-08 40.6 5.4 55 50-117 1-60 (72)
171 cd03050 GST_N_Theta GST_N fami 96.8 0.0076 1.7E-07 39.6 6.6 55 50-117 1-62 (76)
172 KOG3029 Glutathione S-transfer 96.8 0.0032 6.9E-08 54.4 5.9 55 48-117 89-147 (370)
173 TIGR02182 GRXB Glutaredoxin, G 96.8 0.0081 1.7E-07 47.1 7.8 55 51-117 1-58 (209)
174 PF13899 Thioredoxin_7: Thiore 96.7 0.0046 1E-07 41.7 5.4 61 47-108 18-78 (82)
175 cd02969 PRX_like1 Peroxiredoxi 96.7 0.034 7.4E-07 41.9 10.7 93 45-140 24-153 (171)
176 cd02967 mauD Methylamine utili 96.7 0.0038 8.3E-08 43.4 5.0 58 46-108 21-83 (114)
177 TIGR03143 AhpF_homolog putativ 96.6 0.017 3.7E-07 52.0 9.7 56 49-109 369-425 (555)
178 PF13905 Thioredoxin_8: Thiore 96.6 0.011 2.3E-07 40.0 6.6 45 48-94 3-47 (95)
179 PLN02919 haloacid dehalogenase 96.6 0.013 2.8E-07 57.1 9.2 90 46-140 420-537 (1057)
180 KOG0911 Glutaredoxin-related p 96.5 0.0024 5.2E-08 52.8 3.5 58 48-118 139-206 (227)
181 cd02960 AGR Anterior Gradient 96.4 0.0072 1.6E-07 45.9 5.3 90 48-139 25-123 (130)
182 cd03076 GST_N_Pi GST_N family, 96.4 0.015 3.2E-07 38.4 6.0 55 50-117 2-60 (73)
183 cd03057 GST_N_Beta GST_N famil 96.4 0.016 3.5E-07 38.0 6.2 53 51-117 2-62 (77)
184 PTZ00056 glutathione peroxidas 96.3 0.027 5.8E-07 44.6 8.1 44 45-91 38-81 (199)
185 PF06764 DUF1223: Protein of u 96.3 0.024 5.2E-07 45.9 7.7 75 50-138 2-97 (202)
186 PF06110 DUF953: Eukaryotic pr 96.2 0.0053 1.1E-07 45.9 3.6 52 54-109 34-95 (119)
187 PLN02473 glutathione S-transfe 96.2 0.023 5E-07 43.9 7.1 56 49-117 2-64 (214)
188 TIGR01626 ytfJ_HI0045 conserve 96.1 0.028 6E-07 44.9 7.4 54 33-93 46-105 (184)
189 PRK10877 protein disulfide iso 96.1 0.011 2.4E-07 48.1 5.2 27 45-71 106-132 (232)
190 cd03038 GST_N_etherase_LigE GS 96.1 0.011 2.3E-07 39.8 4.4 49 56-117 14-69 (84)
191 cd03047 GST_N_2 GST_N family, 96.1 0.035 7.5E-07 36.2 6.7 54 51-117 2-62 (73)
192 PLN02412 probable glutathione 96.1 0.052 1.1E-06 41.5 8.5 90 47-141 30-166 (167)
193 KOG3425 Uncharacterized conser 96.0 0.014 3.1E-07 44.4 4.8 50 55-108 42-100 (128)
194 cd03077 GST_N_Alpha GST_N fami 95.9 0.035 7.7E-07 37.3 6.3 56 49-117 1-62 (79)
195 cd03046 GST_N_GTT1_like GST_N 95.9 0.044 9.5E-07 35.5 6.3 53 51-117 2-61 (76)
196 PF04908 SH3BGR: SH3-binding, 95.8 0.0062 1.3E-07 44.3 2.1 46 60-118 19-78 (99)
197 smart00594 UAS UAS domain. 95.5 0.058 1.3E-06 39.2 6.4 87 47-135 28-121 (122)
198 cd03023 DsbA_Com1_like DsbA fa 95.5 0.032 7E-07 40.0 5.0 42 44-90 3-44 (154)
199 PLN02395 glutathione S-transfe 95.5 0.074 1.6E-06 41.0 7.2 55 49-117 2-63 (215)
200 PF08534 Redoxin: Redoxin; In 95.4 0.037 8E-07 40.2 5.2 47 45-94 27-74 (146)
201 TIGR00862 O-ClC intracellular 95.4 0.11 2.4E-06 42.6 8.5 51 55-118 16-70 (236)
202 PRK11657 dsbG disulfide isomer 95.4 0.03 6.5E-07 46.0 5.1 38 47-90 118-155 (251)
203 PLN02399 phospholipid hydroper 95.4 0.11 2.4E-06 42.8 8.4 42 47-91 100-141 (236)
204 PHA03075 glutaredoxin-like pro 95.4 0.022 4.8E-07 43.1 3.9 37 48-92 3-39 (123)
205 KOG0191 Thioredoxin/protein di 95.4 0.11 2.5E-06 44.5 8.8 83 46-137 47-132 (383)
206 cd03012 TlpA_like_DipZ_like Tl 95.3 0.1 2.2E-06 37.4 7.1 43 45-90 22-64 (126)
207 KOG0406 Glutathione S-transfer 95.1 0.085 1.8E-06 43.8 6.7 59 47-118 7-70 (231)
208 COG3019 Predicted metal-bindin 94.9 0.24 5.3E-06 38.7 8.4 59 46-117 24-87 (149)
209 cd03020 DsbA_DsbC_DsbG DsbA fa 94.8 0.059 1.3E-06 41.8 5.0 25 46-70 77-101 (197)
210 PF03190 Thioredox_DsbH: Prote 94.8 0.33 7.2E-06 38.2 9.2 60 49-119 40-118 (163)
211 PF07315 DUF1462: Protein of u 94.7 0.42 9.1E-06 34.7 8.6 63 51-122 1-83 (93)
212 KOG0190 Protein disulfide isom 94.6 0.057 1.2E-06 49.2 5.1 65 49-116 45-111 (493)
213 TIGR02540 gpx7 putative glutat 94.6 0.14 3E-06 38.1 6.4 41 47-90 23-63 (153)
214 COG4232 Thiol:disulfide interc 94.6 0.11 2.4E-06 48.1 6.9 87 48-138 476-567 (569)
215 KOG0913 Thiol-disulfide isomer 94.6 0.023 5E-07 47.5 2.4 64 49-116 42-106 (248)
216 PLN02817 glutathione dehydroge 94.6 0.079 1.7E-06 43.9 5.4 50 55-117 70-123 (265)
217 TIGR01262 maiA maleylacetoacet 94.5 0.089 1.9E-06 40.3 5.2 55 51-118 1-63 (210)
218 PLN02378 glutathione S-transfe 94.5 0.12 2.5E-06 40.6 5.9 50 55-117 17-70 (213)
219 KOG2501 Thioredoxin, nucleored 94.4 0.098 2.1E-06 41.2 5.2 65 52-117 39-129 (157)
220 PRK10357 putative glutathione 94.3 0.13 2.9E-06 39.2 5.9 56 51-118 2-61 (202)
221 PF13409 GST_N_2: Glutathione 94.0 0.13 2.8E-06 33.8 4.6 49 57-117 1-57 (70)
222 cd02972 DsbA_family DsbA famil 93.9 0.1 2.3E-06 33.9 3.9 38 50-91 1-38 (98)
223 COG4837 Uncharacterized protei 93.8 0.27 5.8E-06 36.2 6.2 69 48-121 5-89 (106)
224 PTZ00256 glutathione peroxidas 93.6 0.61 1.3E-05 36.0 8.3 38 51-91 46-83 (183)
225 COG0625 Gst Glutathione S-tran 93.4 0.2 4.4E-06 38.7 5.5 48 51-108 2-55 (211)
226 cd03019 DsbA_DsbA DsbA family, 93.2 0.25 5.5E-06 36.6 5.5 43 45-91 14-56 (178)
227 cd03043 GST_N_1 GST_N family, 93.2 0.38 8.2E-06 31.7 5.8 51 54-117 6-62 (73)
228 KOG0191 Thioredoxin/protein di 93.2 0.41 8.8E-06 41.1 7.3 87 47-137 163-250 (383)
229 PF02798 GST_N: Glutathione S- 93.1 0.97 2.1E-05 30.0 7.7 56 48-118 1-65 (76)
230 PF13462 Thioredoxin_4: Thiore 93.1 0.16 3.4E-06 37.0 4.1 48 43-92 9-56 (162)
231 PF13848 Thioredoxin_6: Thiore 92.6 2.4 5.2E-05 31.3 10.0 84 49-137 98-184 (184)
232 cd03018 PRX_AhpE_like Peroxire 92.4 0.27 5.9E-06 35.5 4.6 56 49-107 31-90 (149)
233 cd02978 KaiB_like KaiB-like fa 92.0 0.43 9.4E-06 33.0 4.9 57 49-108 3-60 (72)
234 PRK13972 GSH-dependent disulfi 92.0 0.84 1.8E-05 35.4 7.2 48 50-108 2-56 (215)
235 KOG2824 Glutaredoxin-related p 91.9 0.41 8.9E-06 40.9 5.6 63 44-119 127-204 (281)
236 PF06953 ArsD: Arsenical resis 91.9 1.3 2.8E-05 33.4 7.8 74 47-136 1-99 (123)
237 KOG4277 Uncharacterized conser 91.8 0.33 7.1E-06 42.8 5.1 75 43-119 40-115 (468)
238 cd02970 PRX_like2 Peroxiredoxi 91.3 0.67 1.5E-05 33.1 5.6 58 48-108 25-86 (149)
239 KOG0190 Protein disulfide isom 90.7 0.33 7.2E-06 44.3 4.2 58 49-109 387-444 (493)
240 cd02974 AhpF_NTD_N Alkyl hydro 90.6 1.2 2.6E-05 31.7 6.2 50 48-114 21-70 (94)
241 cd03017 PRX_BCP Peroxiredoxin 90.5 0.59 1.3E-05 33.3 4.6 44 47-93 24-68 (140)
242 PF00578 AhpC-TSA: AhpC/TSA fa 90.1 0.8 1.7E-05 31.8 4.9 61 45-108 24-88 (124)
243 TIGR02654 circ_KaiB circadian 89.2 0.88 1.9E-05 32.6 4.5 57 49-108 5-62 (87)
244 KOG1422 Intracellular Cl- chan 89.0 1.1 2.5E-05 37.0 5.7 49 57-116 20-70 (221)
245 cd00340 GSH_Peroxidase Glutath 88.8 1.1 2.4E-05 33.2 5.1 60 45-108 21-92 (152)
246 PRK09301 circadian clock prote 88.7 1.1 2.3E-05 33.1 4.8 59 47-108 6-65 (103)
247 cd02971 PRX_family Peroxiredox 88.3 1.4 3.1E-05 31.2 5.3 60 46-108 22-86 (140)
248 cd03014 PRX_Atyp2cys Peroxired 87.9 1.8 3.9E-05 31.2 5.7 41 47-92 27-68 (143)
249 COG3634 AhpF Alkyl hydroperoxi 87.6 1.6 3.5E-05 39.4 6.1 76 49-136 119-195 (520)
250 PTZ00057 glutathione s-transfe 86.4 3.6 7.8E-05 31.8 6.9 58 48-118 3-70 (205)
251 KOG1695 Glutathione S-transfer 86.3 1.6 3.4E-05 35.5 5.0 60 47-119 1-64 (206)
252 PF02114 Phosducin: Phosducin; 86.2 2.3 5E-05 35.6 6.1 83 47-136 147-235 (265)
253 cd03079 GST_N_Metaxin2 GST_N f 86.2 1.4 3E-05 30.2 4.0 47 56-117 15-61 (74)
254 cd02968 SCO SCO (an acronym fo 85.6 3.5 7.5E-05 29.3 6.0 60 46-108 22-92 (142)
255 PF01216 Calsequestrin: Calseq 85.5 5.8 0.00013 35.3 8.4 58 79-140 87-145 (383)
256 TIGR03137 AhpC peroxiredoxin. 85.2 6.8 0.00015 30.3 7.9 85 49-137 34-154 (187)
257 COG2999 GrxB Glutaredoxin 2 [P 84.7 0.84 1.8E-05 37.3 2.7 54 52-117 3-59 (215)
258 PF01323 DSBA: DSBA-like thior 83.5 0.67 1.4E-05 34.8 1.6 38 49-91 1-38 (193)
259 KOG3414 Component of the U4/U6 82.8 15 0.00032 28.6 8.6 88 49-140 26-121 (142)
260 KOG0912 Thiol-disulfide isomer 82.7 3.2 6.9E-05 36.5 5.6 91 46-138 13-105 (375)
261 COG5494 Predicted thioredoxin/ 82.0 4.6 0.0001 33.9 6.0 66 47-123 10-76 (265)
262 PRK11752 putative S-transferas 81.9 6.3 0.00014 32.1 6.8 56 48-108 43-105 (264)
263 PRK15317 alkyl hydroperoxide r 81.7 9.8 0.00021 33.9 8.4 51 48-115 21-71 (517)
264 PRK10606 btuE putative glutath 81.6 5 0.00011 31.7 5.9 68 45-116 24-103 (183)
265 PF07689 KaiB: KaiB domain; I 81.3 0.54 1.2E-05 33.1 0.3 53 53-108 3-56 (82)
266 TIGR03140 AhpF alkyl hydropero 81.0 11 0.00024 33.6 8.6 51 49-115 22-72 (515)
267 COG5429 Uncharacterized secret 80.5 5.6 0.00012 33.7 6.0 67 48-123 43-130 (261)
268 KOG0867 Glutathione S-transfer 80.3 7.3 0.00016 31.2 6.6 51 48-108 1-58 (226)
269 PRK10542 glutathionine S-trans 79.0 4.9 0.00011 30.4 5.0 54 51-118 2-64 (201)
270 COG2761 FrnE Predicted dithiol 79.0 1.9 4.2E-05 35.7 2.9 27 46-72 4-30 (225)
271 PRK09437 bcp thioredoxin-depen 78.8 7 0.00015 28.6 5.6 43 47-92 31-74 (154)
272 cd03025 DsbA_FrnE_like DsbA fa 78.2 2 4.4E-05 32.3 2.6 24 49-72 2-25 (193)
273 PRK13190 putative peroxiredoxi 78.0 25 0.00055 27.6 8.9 88 47-138 27-153 (202)
274 cd03075 GST_N_Mu GST_N family, 77.8 10 0.00022 25.4 5.8 46 59-117 10-68 (82)
275 cd02983 P5_C P5 family, C-term 76.6 28 0.00061 25.7 8.4 72 63-140 41-116 (130)
276 PRK00522 tpx lipid hydroperoxi 75.4 11 0.00024 28.5 6.0 41 47-92 45-86 (167)
277 PF11009 DUF2847: Protein of u 74.7 9.1 0.0002 28.2 5.1 77 48-131 20-104 (105)
278 PRK10954 periplasmic protein d 74.4 5.4 0.00012 31.3 4.2 22 47-68 38-59 (207)
279 cd03016 PRX_1cys Peroxiredoxin 74.1 36 0.00078 26.7 8.8 38 52-92 32-69 (203)
280 PF04134 DUF393: Protein of un 72.9 5.5 0.00012 27.9 3.5 41 53-101 2-44 (114)
281 cd03022 DsbA_HCCA_Iso DsbA fam 72.4 2.6 5.7E-05 31.5 1.9 23 50-72 1-23 (192)
282 TIGR03759 conj_TIGR03759 integ 71.5 13 0.00027 30.5 5.7 45 44-96 106-150 (200)
283 PRK13599 putative peroxiredoxi 70.7 53 0.0012 26.3 10.0 84 51-138 34-155 (215)
284 cd03021 DsbA_GSTK DsbA family, 70.7 4.2 9.1E-05 31.8 2.8 25 48-72 1-25 (209)
285 COG3011 Predicted thiol-disulf 70.3 19 0.00041 27.8 6.2 49 48-102 8-56 (137)
286 cd03024 DsbA_FrnE DsbA family, 67.3 6.7 0.00014 29.7 3.2 23 50-72 1-23 (201)
287 COG1651 DsbG Protein-disulfide 66.5 17 0.00036 28.7 5.4 46 44-92 82-127 (244)
288 PTZ00137 2-Cys peroxiredoxin; 66.0 79 0.0017 26.5 9.9 88 47-138 98-224 (261)
289 PF01323 DSBA: DSBA-like thior 63.9 5.4 0.00012 29.8 2.1 34 96-136 159-193 (193)
290 cd03015 PRX_Typ2cys Peroxiredo 63.7 9.8 0.00021 28.7 3.5 41 49-92 32-73 (173)
291 PF02966 DIM1: Mitosis protein 60.7 32 0.0007 26.5 5.8 71 49-123 23-95 (133)
292 PRK10382 alkyl hydroperoxide r 58.5 88 0.0019 24.5 9.5 85 49-137 34-154 (187)
293 PRK13191 putative peroxiredoxi 56.7 1E+02 0.0022 24.7 8.5 38 52-92 40-77 (215)
294 PF13743 Thioredoxin_5: Thiore 56.1 13 0.00027 28.8 3.0 35 52-90 2-36 (176)
295 PLN00118 isocitrate dehydrogen 55.3 34 0.00074 30.3 5.8 48 48-105 42-91 (372)
296 COG1331 Highly conserved prote 55.3 33 0.00071 32.8 6.0 81 53-140 50-151 (667)
297 KOG1672 ATP binding protein [P 54.4 49 0.0011 27.3 6.2 87 45-137 83-176 (211)
298 PRK10877 protein disulfide iso 50.7 17 0.00036 29.5 3.0 44 87-137 185-229 (232)
299 PF09822 ABC_transp_aux: ABC-t 50.2 1.3E+02 0.0029 24.2 9.8 50 46-99 25-79 (271)
300 KOG2603 Oligosaccharyltransfer 49.7 75 0.0016 27.9 6.9 80 30-109 44-132 (331)
301 KOG0914 Thioredoxin-like prote 47.9 16 0.00034 31.0 2.4 69 46-118 144-219 (265)
302 PF11287 DUF3088: Protein of u 46.7 38 0.00082 25.4 4.1 53 57-116 23-79 (112)
303 PF13462 Thioredoxin_4: Thiore 44.4 17 0.00037 26.2 1.9 35 95-137 127-162 (162)
304 KOG4420 Uncharacterized conser 42.9 16 0.00035 31.6 1.8 55 49-117 26-87 (325)
305 KOG0868 Glutathione S-transfer 42.5 22 0.00048 29.3 2.5 57 47-118 5-69 (217)
306 cd03078 GST_N_Metaxin1_like GS 42.3 29 0.00063 23.0 2.7 45 57-117 15-59 (73)
307 PF07912 ERp29_N: ERp29, N-ter 41.0 1.1E+02 0.0023 23.5 5.8 56 81-137 53-117 (126)
308 KOG4244 Failed axon connection 40.6 40 0.00087 29.0 3.8 54 49-118 45-105 (281)
309 PRK05988 formate dehydrogenase 40.1 59 0.0013 25.1 4.4 79 42-138 70-154 (156)
310 cd02991 UAS_ETEA UAS family, E 40.1 1.4E+02 0.0031 21.6 8.9 59 82-140 52-114 (116)
311 PRK15000 peroxidase; Provision 38.5 1.9E+02 0.0042 22.6 8.6 43 47-92 34-78 (200)
312 PF06053 DUF929: Domain of unk 38.1 33 0.00071 28.8 2.9 26 46-71 58-83 (249)
313 PRK07571 bidirectional hydroge 35.6 55 0.0012 25.7 3.7 79 42-138 83-167 (169)
314 cd03072 PDI_b'_ERp44 PDIb' fam 34.9 1.7E+02 0.0036 20.8 6.5 74 62-140 30-109 (111)
315 PF09673 TrbC_Ftype: Type-F co 34.1 35 0.00075 24.8 2.2 22 88-109 55-77 (113)
316 COG1651 DsbG Protein-disulfide 33.8 33 0.00072 27.0 2.2 26 47-72 119-144 (244)
317 cd03020 DsbA_DsbC_DsbG DsbA fa 33.0 29 0.00064 26.7 1.8 31 85-117 153-184 (197)
318 KOG1731 FAD-dependent sulfhydr 32.6 71 0.0015 30.3 4.4 53 55-110 66-123 (606)
319 PRK13189 peroxiredoxin; Provis 31.0 2.8E+02 0.006 22.2 8.8 20 52-71 42-61 (222)
320 cd03019 DsbA_DsbA DsbA family, 30.5 65 0.0014 23.5 3.2 24 95-121 134-158 (178)
321 PF04592 SelP_N: Selenoprotein 30.1 88 0.0019 26.3 4.2 69 40-108 20-94 (238)
322 cd03024 DsbA_FrnE DsbA family, 28.8 48 0.001 24.9 2.3 32 97-135 168-200 (201)
323 KOG4023 Uncharacterized conser 28.0 73 0.0016 23.7 3.0 13 82-94 32-44 (108)
324 cd03013 PRX5_like Peroxiredoxi 27.7 1.3E+02 0.0028 22.5 4.5 56 50-108 34-96 (155)
325 PRK13730 conjugal transfer pil 27.3 97 0.0021 25.7 3.9 74 48-136 117-191 (212)
326 PF15616 TerY-C: TerY-C metal 25.5 27 0.00059 26.7 0.4 17 51-67 73-89 (131)
327 PF14424 Toxin-deaminase: The 24.7 1.6E+02 0.0034 22.2 4.4 24 48-71 97-121 (133)
328 TIGR02742 TrbC_Ftype type-F co 24.5 94 0.002 23.5 3.1 22 88-109 55-77 (130)
329 TIGR00075 hypD hydrogenase exp 22.3 46 0.001 29.7 1.2 27 48-74 58-84 (369)
330 PRK15062 hydrogenase isoenzyme 22.0 46 0.001 29.6 1.2 27 48-74 52-78 (364)
331 COG2761 FrnE Predicted dithiol 21.8 98 0.0021 25.7 3.0 36 98-140 178-214 (225)
332 COG0602 NrdG Organic radical a 21.4 46 0.001 26.7 1.0 56 50-117 23-83 (212)
333 PTZ00253 tryparedoxin peroxida 21.1 1.5E+02 0.0034 22.9 3.9 35 55-92 46-80 (199)
334 PRK09437 bcp thioredoxin-depen 20.7 3.3E+02 0.0072 19.5 7.1 46 62-118 76-134 (154)
335 PF01924 HypD: Hydrogenase for 20.4 58 0.0013 28.9 1.5 26 48-73 47-72 (355)
336 COG0409 HypD Hydrogenase matur 20.4 54 0.0012 29.1 1.2 25 48-72 54-78 (364)
337 KOG1734 Predicted RING-contain 20.2 49 0.0011 28.8 0.9 14 53-66 268-281 (328)
No 1
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=99.80 E-value=3.7e-19 Score=122.61 Aligned_cols=74 Identities=41% Similarity=0.658 Sum_probs=61.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEEEeccCC------eEeeCCCC
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDG------TEEALPRL 122 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~~~~idG------~~l~~~~~ 122 (141)
+|++||||+||+|+.|++.|.+. ..+.+++++.|||++|++|.++|+.+|||+. .+| +++.+|++
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~------~~~~~~~l~~vDI~~d~~l~~~Y~~~IPVl~---~~~~~~~~~~~~~~~~~ 71 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEV------AAEFPFELEEVDIDEDPELFEKYGYRIPVLH---IDGIRQFKEQEELKWRF 71 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHC------CTTSTCEEEEEETTTTHHHHHHSCTSTSEEE---ETT-GGGCTSEEEESSB
T ss_pred CEEEEcCCCCChHHHHHHHHHHH------HhhcCceEEEEECCCCHHHHHHhcCCCCEEE---EcCcccccccceeCCCC
Confidence 58999999999999999999986 3456799999999999999999999999999 678 67755554
Q ss_pred CcccCHHHHHHHH
Q 032418 123 SPRIGVELIQKKI 135 (141)
Q Consensus 123 ~~rl~~~~L~~~l 135 (141)
++++|.++|
T Consensus 72 ----d~~~L~~~L 80 (81)
T PF05768_consen 72 ----DEEQLRAWL 80 (81)
T ss_dssp -----HHHHHHHH
T ss_pred ----CHHHHHHHh
Confidence 477777766
No 2
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.58 E-value=1.1e-14 Score=99.27 Aligned_cols=63 Identities=17% Similarity=0.369 Sum_probs=53.3
Q ss_pred CCCCCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH---HHHHHcCC-cCceEEEeccCCeEe
Q 032418 42 SSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 42 ~~~~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~---el~~kyg~-~VPVl~~~~idG~~l 117 (141)
.|.+..++|+||+++|||+|+++|++|++. +++|+++||++++ ++.+.+|. +||+|+ +||+.+
T Consensus 2 ~~~~~~~~V~ly~~~~Cp~C~~ak~~L~~~----------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~---i~g~~i 68 (79)
T TIGR02190 2 PQARKPESVVVFTKPGCPFCAKAKATLKEK----------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF---IGGKLI 68 (79)
T ss_pred CCcCCCCCEEEEECCCCHhHHHHHHHHHHc----------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE---ECCEEE
Confidence 356677899999999999999999999986 8999999999874 45455564 799998 799866
No 3
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.55 E-value=3.5e-14 Score=97.41 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=51.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH----HHHHHcC---CcCceEEEeccCCeEee
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQ---YEIPVLARVLSDGTEEA 118 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~----el~~kyg---~~VPVl~~~~idG~~l~ 118 (141)
|+|++|++++||+|++|+++|++.. ....+++|+++||++++ ++.+.++ .+||+|+ +||+.++
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~-----~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if---i~g~~ig 70 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLS-----EERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF---VDQKHIG 70 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhc-----ccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE---ECCEEEc
Confidence 5899999999999999999999962 11148999999999864 5666666 4799998 8999763
No 4
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.55 E-value=5.4e-15 Score=105.79 Aligned_cols=79 Identities=19% Similarity=0.370 Sum_probs=56.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHH---HHHHc----CC-cCceEEEeccCCeEe
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSY----QY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~e---l~~ky----g~-~VPVl~~~~idG~~l 117 (141)
+..+|++|++++||+|.++|++|++. +++|+++||+++++ +.+.+ |. +||+|+ +||+.+
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~----------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf---i~g~~i 72 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTL----------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF---VGGKLV 72 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHc----------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE---ECCEEE
Confidence 35789999999999999999999986 89999999998754 32333 44 799998 899876
Q ss_pred eCCCCCcccCHH-HHHHHHHH
Q 032418 118 ALPRLSPRIGVE-LIQKKIAA 137 (141)
Q Consensus 118 ~~~~~~~rl~~~-~L~~~l~~ 137 (141)
+....-.++.++ +|++.|.+
T Consensus 73 GG~ddl~~l~~~G~L~~~l~~ 93 (99)
T TIGR02189 73 GGLENVMALHISGSLVPMLKQ 93 (99)
T ss_pred cCHHHHHHHHHcCCHHHHHHH
Confidence 433222333222 35555543
No 5
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.54 E-value=1.1e-14 Score=97.28 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=52.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHc---CC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY---QY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~ky---g~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
|+||++++||+|++++++|++. +++|+++||++|++..+++ |. +||+|+ +||++...|+...+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~----------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~---~~g~~~~~G~~~~~ 67 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH----------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIV---ADGDLSWSGFRPDK 67 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC----------CCceEEEECCCCHHHHHHHHHcCCcccCEEE---ECCCcEEeccCHHH
Confidence 5899999999999999999986 8999999999998766655 65 799998 77876555554443
Q ss_pred c
Q 032418 126 I 126 (141)
Q Consensus 126 l 126 (141)
+
T Consensus 68 ~ 68 (72)
T TIGR02194 68 L 68 (72)
T ss_pred H
Confidence 3
No 6
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.54 E-value=5.9e-14 Score=97.27 Aligned_cols=58 Identities=16% Similarity=0.481 Sum_probs=48.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHH---HcCC-cCceEEEeccCCeEee
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK---SYQY-EIPVLARVLSDGTEEA 118 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~---kyg~-~VPVl~~~~idG~~l~ 118 (141)
++|+||++++||+|+++|.+|++. +++|+++||++|++..+ ..|. +||+|+ ++|+.+.
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~----------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~---i~~~~~~ 62 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESR----------GFDFEMINVDRVPEAAETLRAQGFRQLPVVI---AGDLSWS 62 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHC----------CCceEEEECCCCHHHHHHHHHcCCCCcCEEE---ECCEEEe
Confidence 479999999999999999999986 89999999999987443 2354 799998 6776654
No 7
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.53 E-value=5.7e-14 Score=91.44 Aligned_cols=65 Identities=15% Similarity=0.352 Sum_probs=56.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCC
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPR 121 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~ 121 (141)
+|++|+++|||+|+++++.|++... ...+++|.++|+++++++.++||. .+|+++ +||+.++.|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~-----~~~~i~~~~id~~~~~~l~~~~~i~~vPti~---i~~~~~~~g~ 67 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAA-----LNPNISAEMIDAAEFPDLADEYGVMSVPAIV---INGKVEFVGR 67 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHH-----hCCceEEEEEEcccCHhHHHHcCCcccCEEE---ECCEEEEecC
Confidence 6899999999999999999998742 234699999999999999999998 699998 7998876653
No 8
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.8e-14 Score=98.81 Aligned_cols=63 Identities=24% Similarity=0.355 Sum_probs=51.0
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH--H---HHHHc-CC-cCceEEEeccCCeEeeCC
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--E---WEKSY-QY-EIPVLARVLSDGTEEALP 120 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~--e---l~~ky-g~-~VPVl~~~~idG~~l~~~ 120 (141)
++|++|++++||||.+||++|+++ +++|+++|+++++ + ..++. |. +||+|+ +||+.++.+
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~----------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~---i~~~~igg~ 67 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRK----------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF---IGGKHVGGC 67 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHc----------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE---ECCEEEeCc
Confidence 368999999999999999999987 8999999999876 3 33344 44 699999 899877655
Q ss_pred CCC
Q 032418 121 RLS 123 (141)
Q Consensus 121 ~~~ 123 (141)
+..
T Consensus 68 ~d~ 70 (80)
T COG0695 68 DDL 70 (80)
T ss_pred ccH
Confidence 543
No 9
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.49 E-value=1.7e-13 Score=91.00 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=48.1
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHH---HHHHcCC-cCceEEEeccCCeEee
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSYQY-EIPVLARVLSDGTEEA 118 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~e---l~~kyg~-~VPVl~~~~idG~~l~ 118 (141)
+|+||++++||+|.+||++|++. +++|+++||+++++ +.+..|. +||+|+ +||+.++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~----------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if---i~g~~ig 62 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQEN----------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF---IDGELIG 62 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc----------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE---ECCEEEe
Confidence 68999999999999999999986 89999999998764 3333455 799998 8998763
No 10
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.48 E-value=3.7e-13 Score=93.42 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=49.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH----HHHHHcC---CcCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQ---YEIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~----el~~kyg---~~VPVl~~~~idG~~l 117 (141)
|++|+++|||+|.+||++|+++.. ...+++|+++||+.+. ++.+.+| .+||+|+ +||+.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~-----~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if---i~g~~i 68 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAI-----ERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF---VDEKHV 68 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCc-----ccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE---ECCEEe
Confidence 789999999999999999999731 1236899999998644 5777777 5799998 899876
No 11
>PHA03050 glutaredoxin; Provisional
Probab=99.46 E-value=1.1e-13 Score=100.90 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=55.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCc---eeEEEECCC---CHH----HHHHcCC-cCceEEEeccCCe
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDV---DLQVRDITT---NPE----WEKSYQY-EIPVLARVLSDGT 115 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i---~~eevDId~---d~e----l~~kyg~-~VPVl~~~~idG~ 115 (141)
..+|++|+++|||||.+||++|++. ++ +|+++||++ +.+ +.+..|. +||+|+ +||+
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~----------~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If---I~g~ 78 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKF----------SFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIF---FGKT 78 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHc----------CCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE---ECCE
Confidence 5689999999999999999999987 55 799999996 433 3344565 799998 8999
Q ss_pred EeeCCCCCcccCHH-HHHHHHH
Q 032418 116 EEALPRLSPRIGVE-LIQKKIA 136 (141)
Q Consensus 116 ~l~~~~~~~rl~~~-~L~~~l~ 136 (141)
.++.......+..+ .|.+.|.
T Consensus 79 ~iGG~ddl~~l~~~g~L~~~l~ 100 (108)
T PHA03050 79 SIGGYSDLLEIDNMDALGDILS 100 (108)
T ss_pred EEeChHHHHHHHHcCCHHHHHH
Confidence 77543333333322 3444444
No 12
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.45 E-value=2e-13 Score=87.94 Aligned_cols=55 Identities=27% Similarity=0.465 Sum_probs=47.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHH----HcCC-cCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK----SYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~----kyg~-~VPVl~~~~idG~~l 117 (141)
|++|++++||+|..++++|++. +++|+++||+++++..+ ..|. ++|+|+ +||+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~----------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~---i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK----------GIPYEEVDVDEDEEAREELKELSGVRTVPQVF---IDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT----------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE---ETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc----------CCeeeEcccccchhHHHHHHHHcCCCccCEEE---ECCEEC
Confidence 7899999999999999999986 89999999999975443 3464 799999 799854
No 13
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.45 E-value=1.9e-13 Score=91.25 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=49.4
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHH----HHHHcCC-cCceEEEeccCCeEeeC
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE----WEKSYQY-EIPVLARVLSDGTEEAL 119 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~e----l~~kyg~-~VPVl~~~~idG~~l~~ 119 (141)
+|+||++++||+|.+|+.+|++. +++|+++||+++++ +.+..+. ++|+|+ +||+.++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~----------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~---i~~~~iGg 64 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREK----------GLPYVEINIDIFPERKAELEERTGSSVVPQIF---FNEKLVGG 64 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHC----------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE---ECCEEEeC
Confidence 68999999999999999999986 89999999999875 4444454 699998 89997753
No 14
>PRK10638 glutaredoxin 3; Provisional
Probab=99.44 E-value=4.8e-13 Score=91.55 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=49.4
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHH----cCC-cCceEEEeccCCeEee
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQY-EIPVLARVLSDGTEEA 118 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~k----yg~-~VPVl~~~~idG~~l~ 118 (141)
|.+|++|++++||+|++++.+|++. +++|+++||+++++..+. .|. +||+|+ +||+.++
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~----------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~---~~g~~ig 64 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSK----------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF---IDAQHIG 64 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHc----------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE---ECCEEEe
Confidence 3479999999999999999999986 899999999988754433 354 699998 7998764
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.43 E-value=5.4e-13 Score=88.18 Aligned_cols=57 Identities=23% Similarity=0.402 Sum_probs=48.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHH----HcCC--cCceEEEeccCCeEee
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK----SYQY--EIPVLARVLSDGTEEA 118 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~----kyg~--~VPVl~~~~idG~~l~ 118 (141)
+|+||++++||+|.+++.+|++. +++|+++||+++++..+ .+|. +||+|+ +||+.++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~----------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~---i~g~~ig 63 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKK----------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF---IGDVHIG 63 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC----------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE---ECCEEEe
Confidence 48999999999999999999986 89999999999875444 3453 799998 8998764
No 16
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.43 E-value=1.9e-13 Score=91.97 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=48.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHc----CC-cCceEEEeccCCeEee
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----QY-EIPVLARVLSDGTEEA 118 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~ky----g~-~VPVl~~~~idG~~l~ 118 (141)
|++|++++||+|.+|+++|++. +++|+++||+.|+++.+++ |. ++|+|+ +||+.++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~----------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~---i~g~~ig 61 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK----------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF---IGDVHVG 61 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc----------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE---ECCEEEc
Confidence 6899999999999999999986 8999999999998765554 44 699998 8998764
No 17
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.42 E-value=2.3e-12 Score=85.70 Aligned_cols=80 Identities=20% Similarity=0.368 Sum_probs=63.2
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcccC
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPRIG 127 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl~ 127 (141)
+|++|+++||++|..+++.|++... .....+.+..+|+++++++.++||. .+|+++ +||+....| ...
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~----~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~---~~g~~~~~G----~~~ 70 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAK----EMGDAVEVEYINVMENPQKAMEYGIMAVPAIV---INGDVEFIG----APT 70 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHH----HhcCceEEEEEeCccCHHHHHHcCCccCCEEE---ECCEEEEec----CCC
Confidence 6899999999999999999998642 1123488999999999999999997 599998 688854333 445
Q ss_pred HHHHHHHHHHHh
Q 032418 128 VELIQKKIAAAL 139 (141)
Q Consensus 128 ~~~L~~~l~~~~ 139 (141)
.+++.+.|.++|
T Consensus 71 ~~~l~~~l~~~~ 82 (82)
T TIGR00411 71 KEELVEAIKKRL 82 (82)
T ss_pred HHHHHHHHHhhC
Confidence 778888777654
No 18
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.38 E-value=3.4e-12 Score=83.78 Aligned_cols=70 Identities=17% Similarity=0.332 Sum_probs=54.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHc-----CC-cCceEEEeccCCeEeeCCCC
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY-----QY-EIPVLARVLSDGTEEALPRL 122 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~ky-----g~-~VPVl~~~~idG~~l~~~~~ 122 (141)
+|++|+++|||+|.+++.+|++. +++|+.+||+++++..+.+ +. .||+++ +.||+.+..+.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~----------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~--~~~g~~l~~~~- 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKL----------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVK--FADGSFLTNPS- 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHc----------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEEE--ECCCeEecCCC-
Confidence 48999999999999999999986 7899999999887665543 54 699986 25777765444
Q ss_pred CcccCHHHHHHHHH
Q 032418 123 SPRIGVELIQKKIA 136 (141)
Q Consensus 123 ~~rl~~~~L~~~l~ 136 (141)
..++.++|.
T Consensus 68 -----~~~~~~~l~ 76 (77)
T TIGR02200 68 -----AAQVKAKLQ 76 (77)
T ss_pred -----HHHHHHHhh
Confidence 456665553
No 19
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.33 E-value=9.4e-12 Score=79.89 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=47.1
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHH----HHHcCC-cCceEEEeccCCeEe
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW----EKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el----~~kyg~-~VPVl~~~~idG~~l 117 (141)
+|++|+.+|||+|++++.+|++. +++|+++||+++++. .+.++. .+|+++ ++|+.+
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~----------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~---~~~~~~ 61 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSK----------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIV---IGHKII 61 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHC----------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEE---ECCEEE
Confidence 48999999999999999999885 799999999988753 455776 699998 678753
No 20
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.30 E-value=9.3e-12 Score=79.33 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=48.5
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHH----HcCC-cCceEEEeccCCeEeeC
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK----SYQY-EIPVLARVLSDGTEEAL 119 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~----kyg~-~VPVl~~~~idG~~l~~ 119 (141)
+|++|++++||+|++++.+|++. +++|+++||+++++..+ ..+. ++|+++ +||+.++.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~----------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~---~~~~~igg 63 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESL----------GIEFEEIDILEDGELREELKELSGWPTVPQIF---INGEFIGG 63 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc----------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE---ECCEEEec
Confidence 47899999999999999999997 79999999999875443 3454 799998 79987743
No 21
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.30 E-value=1.1e-11 Score=88.34 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=50.1
Q ss_pred CceEEEEeC-----CCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHH----HcCC-cCceEEEeccCCeE
Q 032418 47 TRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK----SYQY-EIPVLARVLSDGTE 116 (141)
Q Consensus 47 ~~~VtLYtk-----p~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~----kyg~-~VPVl~~~~idG~~ 116 (141)
..+|+||++ |+||+|.++|++|++. +++|+++||++|++..+ ..|. +||+|+ +||+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf---i~g~~ 77 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC----------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY---VKGEF 77 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE---ECCEE
Confidence 568999998 9999999999999987 89999999998876443 3454 799998 89986
Q ss_pred eeC
Q 032418 117 EAL 119 (141)
Q Consensus 117 l~~ 119 (141)
++.
T Consensus 78 iGG 80 (97)
T TIGR00365 78 VGG 80 (97)
T ss_pred EeC
Confidence 643
No 22
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.28 E-value=1.5e-11 Score=86.04 Aligned_cols=59 Identities=24% Similarity=0.378 Sum_probs=49.9
Q ss_pred CceEEEEeC-----CCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHH----HcCC-cCceEEEeccCCeE
Q 032418 47 TRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK----SYQY-EIPVLARVLSDGTE 116 (141)
Q Consensus 47 ~~~VtLYtk-----p~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~----kyg~-~VPVl~~~~idG~~ 116 (141)
..+|++|++ |+||+|.++|++|++. +++|+++||++|+++.+ ..|. ++|+|+ +||+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf---i~g~~ 73 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY---VNGEL 73 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE---ECCEE
Confidence 568999998 7999999999999997 79999999999886544 3454 799998 89987
Q ss_pred ee
Q 032418 117 EA 118 (141)
Q Consensus 117 l~ 118 (141)
++
T Consensus 74 iG 75 (90)
T cd03028 74 VG 75 (90)
T ss_pred Ee
Confidence 63
No 23
>PRK10824 glutaredoxin-4; Provisional
Probab=99.24 E-value=1.4e-11 Score=91.54 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=50.5
Q ss_pred CceEEEEeC-----CCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHH----cCC-cCceEEEeccCCeE
Q 032418 47 TRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQY-EIPVLARVLSDGTE 116 (141)
Q Consensus 47 ~~~VtLYtk-----p~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~k----yg~-~VPVl~~~~idG~~ 116 (141)
..+|++|+| |+||||++||++|++. +++|.++||++|+++.+. -|+ +||.|| +||+.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~----------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF---I~G~~ 80 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC----------GERFAYVDILQNPDIRAELPKYANWPTFPQLW---VDGEL 80 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc----------CCCceEEEecCCHHHHHHHHHHhCCCCCCeEE---ECCEE
Confidence 568999999 6999999999999987 799999999999865443 344 799999 89997
Q ss_pred eeC
Q 032418 117 EAL 119 (141)
Q Consensus 117 l~~ 119 (141)
++.
T Consensus 81 IGG 83 (115)
T PRK10824 81 VGG 83 (115)
T ss_pred EcC
Confidence 754
No 24
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.24 E-value=4.5e-11 Score=76.72 Aligned_cols=58 Identities=21% Similarity=0.424 Sum_probs=47.7
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHc----C-CcCceEEEeccCCeEeeC
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----Q-YEIPVLARVLSDGTEEAL 119 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~ky----g-~~VPVl~~~~idG~~l~~ 119 (141)
+|++|+.+|||+|.+++..|++. +++|..+||+.+++..+.+ + ..+|+++ .+|+.+..
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~----------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~---~~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDER----------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVV---IGDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHC----------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEE---ECCEEEec
Confidence 47999999999999999999886 7999999999887655544 3 3699998 68876644
No 25
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.23 E-value=1.2e-11 Score=107.66 Aligned_cols=59 Identities=15% Similarity=0.305 Sum_probs=49.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHH---HHHH---------cCC-cCceEEEeccC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKS---------YQY-EIPVLARVLSD 113 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~e---l~~k---------yg~-~VPVl~~~~id 113 (141)
|++|++||+++||+|++||++|++. +++|+++||+++++ +.++ .|. +||+|+ +|
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~----------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~if---i~ 67 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGAN----------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIF---VG 67 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHC----------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEE---EC
Confidence 4679999999999999999999997 89999999998874 3333 244 799998 79
Q ss_pred CeEee
Q 032418 114 GTEEA 118 (141)
Q Consensus 114 G~~l~ 118 (141)
|+.++
T Consensus 68 ~~~ig 72 (410)
T PRK12759 68 DVHIG 72 (410)
T ss_pred CEEEe
Confidence 98663
No 26
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.20 E-value=9.6e-11 Score=82.43 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=57.1
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCC
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPR 121 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~ 121 (141)
.+|.+|+.+||++|..+++.+++... ...+++|+.+|+++.++++++||. .+|.++ +||+....|+
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~-----~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~v---idG~~~~~G~ 80 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAV-----LNPNIEHEMIDGALFQDEVEERGIMSVPAIF---LNGELFGFGR 80 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHH-----HCCCceEEEEEhHhCHHHHHHcCCccCCEEE---ECCEEEEeCC
Confidence 37999999999999999999998753 223799999999999999999998 599998 7999886653
No 27
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.20 E-value=7.8e-11 Score=80.01 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=54.5
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCccc
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPRI 126 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl 126 (141)
|+|.+|+ +|||+|+.+++.+++.. .+.+++++.++|++ ++...+||. .+|+++ +||+.+..|+ ..
T Consensus 1 m~i~~~a-~~C~~C~~~~~~~~~~~------~e~~~~~~~~~v~~-~~~a~~~~v~~vPti~---i~G~~~~~G~---~~ 66 (76)
T TIGR00412 1 MKIQIYG-TGCANCQMTEKNVKKAV------EELGIDAEFEKVTD-MNEILEAGVTATPGVA---VDGELVIMGK---IP 66 (76)
T ss_pred CEEEEEC-CCCcCHHHHHHHHHHHH------HHcCCCeEEEEeCC-HHHHHHcCCCcCCEEE---ECCEEEEEec---cC
Confidence 4688888 99999999999888874 23467788888884 444677886 699998 6999885554 23
Q ss_pred CHHHHHHHH
Q 032418 127 GVELIQKKI 135 (141)
Q Consensus 127 ~~~~L~~~l 135 (141)
+.+++.+.+
T Consensus 67 ~~~~l~~~l 75 (76)
T TIGR00412 67 SKEEIKEIL 75 (76)
T ss_pred CHHHHHHHh
Confidence 446666554
No 28
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.19 E-value=3.7e-11 Score=80.25 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=42.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC--C-HH----HHHHcCC-cCceEEEeccCCeEe
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N-PE----WEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~--d-~e----l~~kyg~-~VPVl~~~~idG~~l 117 (141)
+|++|++++||+|++++++|++. +++|+.+||+. + .+ +.+.+|. ++|+++ +||+.+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~----------~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~---~~g~~i 64 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKEL----------GVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF---IGGKFI 64 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHc----------CCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE---ECCEEE
Confidence 48999999999999999999997 45666666654 3 22 3344565 699998 799876
No 29
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.19 E-value=1.3e-10 Score=84.08 Aligned_cols=86 Identities=22% Similarity=0.270 Sum_probs=64.1
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcccC
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPRIG 127 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl~ 127 (141)
-+..|+++||++|+.++++|++... ....+++..+|+++++++.++|+. .+|.++. +.+|+....-++.+-..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~-----~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i-~~~g~~~~~~~~~G~~~ 98 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSE-----LSDKLKLEIYDFDEDKEKAEKYGVERVPTTIF-LQDGGKDGGIRYYGLPA 98 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHH-----hcCceEEEEEeCCcCHHHHHHcCCCcCCEEEE-EeCCeecceEEEEecCc
Confidence 3455589999999999999998852 124689999999999999999997 6999883 45554332113334455
Q ss_pred HHHHHHHHHHHhh
Q 032418 128 VELIQKKIAAALR 140 (141)
Q Consensus 128 ~~~L~~~l~~~~~ 140 (141)
..++.+.|.+++.
T Consensus 99 ~~el~~~i~~i~~ 111 (113)
T cd02975 99 GYEFASLIEDIVR 111 (113)
T ss_pred hHHHHHHHHHHHh
Confidence 7788888887763
No 30
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.19 E-value=4e-11 Score=80.03 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=42.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCce--eEEEECCC--CHH-----HHHHcCC-cCceEEEeccCCeEee
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVD--LQVRDITT--NPE-----WEKSYQY-EIPVLARVLSDGTEEA 118 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~--~eevDId~--d~e-----l~~kyg~-~VPVl~~~~idG~~l~ 118 (141)
|++|+++|||+|.+++++|++. +++ |+.+||+. +++ +.+.+|. ++|+++ +||+.++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~----------~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~---i~g~~ig 66 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKL----------NVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF---INGKFIG 66 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHc----------CCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE---ECCEEEc
Confidence 5899999999999999999997 343 55555554 332 4455676 799998 8998763
No 31
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.3e-10 Score=90.17 Aligned_cols=90 Identities=21% Similarity=0.313 Sum_probs=76.2
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCc-CceEEEeccCCeEeeCCCCC
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTEEALPRLS 123 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~-VPVl~~~~idG~~l~~~~~~ 123 (141)
...+-++-|+.+||+.|+...+.|++... +....|.+..+|+|++++++++|+.+ ||+++ .|.||++. -++.
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~----~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvl-vfknGe~~--d~~v 132 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVS----EYAGKFKLYKVDTDEHPELAEDYEISAVPTVL-VFKNGEKV--DRFV 132 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHH----hhcCeEEEEEEccccccchHhhcceeeeeEEE-EEECCEEe--eeec
Confidence 34677999999999999999999999731 22357999999999999999999986 99988 57999977 4466
Q ss_pred cccCHHHHHHHHHHHhhC
Q 032418 124 PRIGVELIQKKIAAALRQ 141 (141)
Q Consensus 124 ~rl~~~~L~~~l~~~~~~ 141 (141)
+..+++.|.+.|.+.+++
T Consensus 133 G~~~~~~l~~~i~k~l~~ 150 (150)
T KOG0910|consen 133 GAVPKEQLRSLIKKFLKL 150 (150)
T ss_pred ccCCHHHHHHHHHHHhcC
Confidence 778899999999988763
No 32
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.06 E-value=1.4e-09 Score=75.55 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=64.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
.+.+.+|+.+||+.|..+++.+++... ....++.+.++|+++++++.++++. .+|.++. +.||+.+ .++.+.
T Consensus 14 ~~vlv~f~a~~C~~C~~~~~~l~~l~~----~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i-~~~g~~v--~~~~g~ 86 (97)
T cd02949 14 RLILVLYTSPTCGPCRTLKPILNKVID----EFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQF-FKDKELV--KEISGV 86 (97)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHHH----HhCCceEEEEEECCCCHHHHHHCCCeeccEEEE-EECCeEE--EEEeCC
Confidence 456889999999999999999988632 1113589999999999999999997 5999884 4789876 455566
Q ss_pred cCHHHHHHHH
Q 032418 126 IGVELIQKKI 135 (141)
Q Consensus 126 l~~~~L~~~l 135 (141)
...+++++.|
T Consensus 87 ~~~~~~~~~l 96 (97)
T cd02949 87 KMKSEYREFI 96 (97)
T ss_pred ccHHHHHHhh
Confidence 6677777665
No 33
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.06 E-value=3e-10 Score=87.44 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=51.2
Q ss_pred eEEEEeCC------CCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHH----HHcC-----CcCceEEEeccC
Q 032418 49 KLVLYSKP------GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWE----KSYQ-----YEIPVLARVLSD 113 (141)
Q Consensus 49 ~VtLYtkp------~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~----~kyg-----~~VPVl~~~~id 113 (141)
+|+|||++ +|++|.++|.+|+++ +++|+++||+.|+++. +..+ .++|+|| ++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~----------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF---I~ 67 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESF----------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF---VD 67 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHC----------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE---EC
Confidence 48899999 999999999999987 8999999999887544 4444 3699999 89
Q ss_pred CeEeeCCCCCcc
Q 032418 114 GTEEALPRLSPR 125 (141)
Q Consensus 114 G~~l~~~~~~~r 125 (141)
|+.++....-.+
T Consensus 68 G~~IGG~del~~ 79 (147)
T cd03031 68 GRYLGGAEEVLR 79 (147)
T ss_pred CEEEecHHHHHH
Confidence 998865433333
No 34
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.03 E-value=3.6e-09 Score=71.95 Aligned_cols=85 Identities=21% Similarity=0.314 Sum_probs=70.1
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCc
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSP 124 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~ 124 (141)
....|+.|+++||+.|...++.+.+... ....++.|-.+|+++++++.++|+. .+|.++ .+.+|+... +..+
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~----~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~-~~~~g~~~~--~~~g 89 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAK----EYKDNVKFAKVDCDENKELCKKYGVKSVPTII-FFKNGKEVK--RYNG 89 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHH----HTTTTSEEEEEETTTSHHHHHHTTCSSSSEEE-EEETTEEEE--EEES
T ss_pred CCCEEEEEeCCCCCccccccceeccccc----ccccccccchhhhhccchhhhccCCCCCCEEE-EEECCcEEE--EEEC
Confidence 3677899999999999999999988753 1122799999999999999999998 599988 468999774 5666
Q ss_pred ccCHHHHHHHHHH
Q 032418 125 RIGVELIQKKIAA 137 (141)
Q Consensus 125 rl~~~~L~~~l~~ 137 (141)
..+.+.|.+.|.+
T Consensus 90 ~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 90 PRNAESLIEFIEK 102 (103)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc
Confidence 6788999888864
No 35
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.01 E-value=1.2e-09 Score=80.60 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=60.0
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH-----------HHHHHcCC-----cCceEEEec
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-----------EWEKSYQY-----EIPVLARVL 111 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~-----------el~~kyg~-----~VPVl~~~~ 111 (141)
..+..|+++|||+|+.+.+.|++... +.+.++..+|++.|+ ++.++|+. .+|+++ .+
T Consensus 25 ~~iv~f~~~~Cp~C~~~~P~l~~~~~------~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v-~~ 97 (122)
T TIGR01295 25 TATFFIGRKTCPYCRKFSGTLSGVVA------QTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFV-HI 97 (122)
T ss_pred cEEEEEECCCChhHHHHhHHHHHHHH------hcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEE-EE
Confidence 35889999999999999999999842 346889999999653 45566653 399988 56
Q ss_pred cCCeEeeCCCCCc-ccCHHHHHHHHH
Q 032418 112 SDGTEEALPRLSP-RIGVELIQKKIA 136 (141)
Q Consensus 112 idG~~l~~~~~~~-rl~~~~L~~~l~ 136 (141)
.||+++. +..+ ....++|++.+.
T Consensus 98 k~Gk~v~--~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 98 TDGKQVS--VRCGSSTTAQELQDIAA 121 (122)
T ss_pred eCCeEEE--EEeCCCCCHHHHHHHhh
Confidence 9999874 3333 556778777654
No 36
>PHA02125 thioredoxin-like protein
Probab=98.99 E-value=2.2e-09 Score=72.36 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=53.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc-cC
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR-IG 127 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r-l~ 127 (141)
|++|+.+||+.|..++++|++. .+.+..+|+++++++.++|+. .+|+++ +|+.+. +..+. -.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~----------~~~~~~vd~~~~~~l~~~~~v~~~PT~~----~g~~~~--~~~G~~~~ 65 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV----------EYTYVDVDTDEGVELTAKHHIRSLPTLV----NTSTLD--RFTGVPRN 65 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH----------hheEEeeeCCCCHHHHHHcCCceeCeEE----CCEEEE--EEeCCCCc
Confidence 8899999999999999999875 466777888889999999997 699986 677542 12221 12
Q ss_pred HHHHHHHHH
Q 032418 128 VELIQKKIA 136 (141)
Q Consensus 128 ~~~L~~~l~ 136 (141)
..+|+++|+
T Consensus 66 ~~~l~~~~~ 74 (75)
T PHA02125 66 VAELKEKLG 74 (75)
T ss_pred HHHHHHHhC
Confidence 466666653
No 37
>PTZ00062 glutaredoxin; Provisional
Probab=98.97 E-value=1.1e-09 Score=88.13 Aligned_cols=60 Identities=20% Similarity=0.404 Sum_probs=50.2
Q ss_pred CceEEEEeC-----CCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHH----cCC-cCceEEEeccCCeE
Q 032418 47 TRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----YQY-EIPVLARVLSDGTE 116 (141)
Q Consensus 47 ~~~VtLYtk-----p~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~k----yg~-~VPVl~~~~idG~~ 116 (141)
..+|+||+| |+||+|++++.+|++. +++|+++||++|++.++. .|+ +||+|+ +||+.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~----------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf---I~G~~ 178 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS----------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY---VNGEL 178 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc----------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE---ECCEE
Confidence 467999999 7999999999999986 899999999998865433 354 699999 89997
Q ss_pred eeC
Q 032418 117 EAL 119 (141)
Q Consensus 117 l~~ 119 (141)
++.
T Consensus 179 IGG 181 (204)
T PTZ00062 179 IGG 181 (204)
T ss_pred EcC
Confidence 744
No 38
>PHA02278 thioredoxin-like protein
Probab=98.96 E-value=5.4e-09 Score=75.40 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=61.9
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC----HHHHHHcCC-cCceEEEeccCCeEeeCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN----PEWEKSYQY-EIPVLARVLSDGTEEALP 120 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d----~el~~kyg~-~VPVl~~~~idG~~l~~~ 120 (141)
..+.+.-|+++||+.|+.+.+.+++... .....+.+..+||+.+ +++.++|+. .+|+++ .|.||+.+ +
T Consensus 14 ~~~vvV~F~A~WCgpCk~m~p~l~~l~~----~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i-~fk~G~~v--~ 86 (103)
T PHA02278 14 KKDVIVMITQDNCGKCEILKSVIPMFQE----SGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI-GYKDGQLV--K 86 (103)
T ss_pred CCcEEEEEECCCCHHHHhHHHHHHHHHh----hhcCCceEEEEECCccccccHHHHHHCCCccccEEE-EEECCEEE--E
Confidence 4577899999999999999999998742 1123467999999986 689999997 599987 56999977 4
Q ss_pred CCCcccCHHHHHH
Q 032418 121 RLSPRIGVELIQK 133 (141)
Q Consensus 121 ~~~~rl~~~~L~~ 133 (141)
++.+....+.+.+
T Consensus 87 ~~~G~~~~~~l~~ 99 (103)
T PHA02278 87 KYEDQVTPMQLQE 99 (103)
T ss_pred EEeCCCCHHHHHh
Confidence 4555555555543
No 39
>PRK09381 trxA thioredoxin; Provisional
Probab=98.95 E-value=8.9e-09 Score=72.31 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=69.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCc
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSP 124 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~ 124 (141)
..+.+..|..+||+.|..+.+.+++... ....++.+-.+|++.++++.++|+. .+|+++ .+.+|+.. ++..+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~----~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~-~~~~G~~~--~~~~G 93 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIAD----EYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL-LFKNGEVA--ATKVG 93 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHH----HhCCCcEEEEEECCCChhHHHhCCCCcCCEEE-EEeCCeEE--EEecC
Confidence 4567889999999999999999987643 1123588999999999999999997 599977 45899866 34555
Q ss_pred ccCHHHHHHHHHHHhh
Q 032418 125 RIGVELIQKKIAAALR 140 (141)
Q Consensus 125 rl~~~~L~~~l~~~~~ 140 (141)
.+..+++.+.|++.++
T Consensus 94 ~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 94 ALSKGQLKEFLDANLA 109 (109)
T ss_pred CCCHHHHHHHHHHhcC
Confidence 6678888888887764
No 40
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.6e-09 Score=79.26 Aligned_cols=61 Identities=25% Similarity=0.342 Sum_probs=46.2
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH---HHHH----HcCC-cCceEEEeccCCeEe
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEK----SYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~---el~~----kyg~-~VPVl~~~~idG~~l 117 (141)
+...|++|||++||+|+.+|.+|... ++.+..+.+|+++ ++.+ ..|. ++|.|| ++|+.+
T Consensus 12 ~~~~VVifSKs~C~~c~~~k~ll~~~----------~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vF---I~Gk~i 78 (104)
T KOG1752|consen 12 SENPVVIFSKSSCPYCHRAKELLSDL----------GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVF---IGGKFI 78 (104)
T ss_pred hcCCEEEEECCcCchHHHHHHHHHhC----------CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEE---ECCEEE
Confidence 35679999999999999999999985 6777777777543 3322 2233 699999 899977
Q ss_pred eC
Q 032418 118 AL 119 (141)
Q Consensus 118 ~~ 119 (141)
+.
T Consensus 79 GG 80 (104)
T KOG1752|consen 79 GG 80 (104)
T ss_pred cC
Confidence 44
No 41
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.88 E-value=1.3e-08 Score=75.26 Aligned_cols=83 Identities=10% Similarity=-0.013 Sum_probs=65.7
Q ss_pred CCCCceEEEEeCCC--CCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCC
Q 032418 44 SSSTRKLVLYSKPG--CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALP 120 (141)
Q Consensus 44 ~~~~~~VtLYtkp~--C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~ 120 (141)
......|..|+.+| ||.|...++.|++... .....+.|-.+|+++++++..+|+. .||+++ .|.||+.+ +
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i~P~leela~----e~~~~v~f~kVdid~~~~la~~f~V~sIPTli-~fkdGk~v--~ 97 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLK----AFPGRFRAAVVGRADEQALAARFGVLRTPALL-FFRDGRYV--G 97 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhhHhHHHHHHH----HCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE-EEECCEEE--E
Confidence 34577899999996 9999999999999853 2223478999999999999999998 599987 56999976 4
Q ss_pred CCCcccCHHHHHH
Q 032418 121 RLSPRIGVELIQK 133 (141)
Q Consensus 121 ~~~~rl~~~~L~~ 133 (141)
++.+-...++|..
T Consensus 98 ~~~G~~~~~e~~~ 110 (111)
T cd02965 98 VLAGIRDWDEYVA 110 (111)
T ss_pred EEeCccCHHHHhh
Confidence 4556666666653
No 42
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.87 E-value=1.5e-08 Score=75.24 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=55.5
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEee
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEA 118 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~ 118 (141)
...|.-|+.+||+.|+.+.+.|+++.. .....+.|-.+|+++++++.++|+. .||+++ .|.||+.+.
T Consensus 15 ~~vVV~F~A~WCgpCk~m~P~le~la~----~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~-~fk~G~~v~ 82 (114)
T cd02954 15 KVVVIRFGRDWDPVCMQMDEVLAKIAE----DVSNFAVIYLVDIDEVPDFNKMYELYDPPTVM-FFFRNKHMK 82 (114)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHH----HccCceEEEEEECCCCHHHHHHcCCCCCCEEE-EEECCEEEE
Confidence 457788999999999999999999852 1112368999999999999999997 599987 568999764
No 43
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.87 E-value=3.1e-08 Score=67.79 Aligned_cols=83 Identities=11% Similarity=0.110 Sum_probs=63.2
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCc
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSP 124 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~ 124 (141)
..+.+..|..+||+.|....+.+.+... .....+.+-.+|+++++++.++|+. .+|+++. +.+|+.. .+..+
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~----~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~-~~~g~~~--~~~~g 84 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAE----EYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYL-FAAGQPV--DGFQG 84 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHH----HhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEE-EeCCEEe--eeecC
Confidence 4577889999999999999999988742 1122578899999999999999997 5999884 5789865 23444
Q ss_pred ccCHHHHHHHH
Q 032418 125 RIGVELIQKKI 135 (141)
Q Consensus 125 rl~~~~L~~~l 135 (141)
..+.+.+...|
T Consensus 85 ~~~~~~l~~~l 95 (96)
T cd02956 85 AQPEEQLRQML 95 (96)
T ss_pred CCCHHHHHHHh
Confidence 55566666554
No 44
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.86 E-value=1e-08 Score=69.39 Aligned_cols=74 Identities=23% Similarity=0.394 Sum_probs=53.8
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCccc
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPRI 126 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl 126 (141)
++|.+ ..++|+.|..+.+.+++... +.+++++.+|+.+.+++ .+||. .+|.++ +||+..+.|+.-
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~~------~~~i~~ei~~~~~~~~~-~~ygv~~vPalv---Ing~~~~~G~~p--- 66 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAAE------ELGIEVEIIDIEDFEEI-EKYGVMSVPALV---INGKVVFVGRVP--- 66 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHHH------HTTEEEEEEETTTHHHH-HHTT-SSSSEEE---ETTEEEEESS-----
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHHH------hcCCeEEEEEccCHHHH-HHcCCCCCCEEE---ECCEEEEEecCC---
Confidence 46788 56779999999999988742 34699999999555555 99997 699998 899988777432
Q ss_pred CHHHHHHHH
Q 032418 127 GVELIQKKI 135 (141)
Q Consensus 127 ~~~~L~~~l 135 (141)
..++|.+.|
T Consensus 67 ~~~el~~~l 75 (76)
T PF13192_consen 67 SKEELKELL 75 (76)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHHHh
Confidence 344554443
No 45
>PRK10996 thioredoxin 2; Provisional
Probab=98.85 E-value=2.6e-08 Score=74.43 Aligned_cols=86 Identities=13% Similarity=0.230 Sum_probs=68.4
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
...+..|+++||+.|....+.+++... ....++.+-.+|+++++++.++|+. .+|+++ .+.||+.+ .++.+.
T Consensus 53 k~vvv~F~a~wC~~C~~~~~~l~~l~~----~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptli-i~~~G~~v--~~~~G~ 125 (139)
T PRK10996 53 LPVVIDFWAPWCGPCRNFAPIFEDVAA----ERSGKVRFVKVNTEAERELSARFRIRSIPTIM-IFKNGQVV--DMLNGA 125 (139)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHH----HhCCCeEEEEEeCCCCHHHHHhcCCCccCEEE-EEECCEEE--EEEcCC
Confidence 456889999999999999999988642 1223688999999999999999997 699987 45899976 344556
Q ss_pred cCHHHHHHHHHHHh
Q 032418 126 IGVELIQKKIAAAL 139 (141)
Q Consensus 126 l~~~~L~~~l~~~~ 139 (141)
..++++.+.|..++
T Consensus 126 ~~~e~l~~~l~~~~ 139 (139)
T PRK10996 126 VPKAPFDSWLNEAL 139 (139)
T ss_pred CCHHHHHHHHHHhC
Confidence 77888888887654
No 46
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.84 E-value=4.4e-08 Score=75.21 Aligned_cols=87 Identities=10% Similarity=0.084 Sum_probs=67.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCC-ceeEEEECCCCHHHHHHcCCc-CceEEEeccCCe-EeeCCCCC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGT-EEALPRLS 123 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~-i~~eevDId~d~el~~kyg~~-VPVl~~~~idG~-~l~~~~~~ 123 (141)
...|.-|+++||+.|....+.|++... ...+ +.+..||||+++++.++|+.. +|.++..|.||+ .. ++.+
T Consensus 24 ~lVVvdF~A~WCgpCk~m~p~l~~la~-----~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~~v--d~~t 96 (142)
T PLN00410 24 RLVVIRFGHDWDETCMQMDEVLASVAE-----TIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHIMI--DLGT 96 (142)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHH-----HcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeEEE--EEec
Confidence 456889999999999999999999853 2223 777999999999999999986 655543568998 55 3333
Q ss_pred c--------ccCHHHHHHHHHHHhh
Q 032418 124 P--------RIGVELIQKKIAAALR 140 (141)
Q Consensus 124 ~--------rl~~~~L~~~l~~~~~ 140 (141)
+ -...++|+..+...+|
T Consensus 97 G~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 97 GNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred ccccccccccCCHHHHHHHHHHHHH
Confidence 3 4677888888888775
No 47
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.84 E-value=1.6e-08 Score=72.54 Aligned_cols=87 Identities=7% Similarity=0.071 Sum_probs=67.4
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCC
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLS 123 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~ 123 (141)
...+.++.|..|||+.|....+.+++... . ....++.+-.+|+++++++.++++. .+|+++ .+.||+.. .+..
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~--~-~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~-i~~~g~~~--~~~~ 96 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQ--E-LEPLGVGIATVNAGHERRLARKLGAHSVPAIV-GIINGQVT--FYHD 96 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHH--H-HHhcCceEEEEeccccHHHHHHcCCccCCEEE-EEECCEEE--EEec
Confidence 45678999999999999999999877642 1 1112588999999999999999997 599987 45899865 3455
Q ss_pred cccCHHHHHHHHHH
Q 032418 124 PRIGVELIQKKIAA 137 (141)
Q Consensus 124 ~rl~~~~L~~~l~~ 137 (141)
+..+++.|.+.|.+
T Consensus 97 G~~~~~~l~~~i~~ 110 (111)
T cd02963 97 SSFTKQHVVDFVRK 110 (111)
T ss_pred CCCCHHHHHHHHhc
Confidence 56678888887765
No 48
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.83 E-value=3.8e-08 Score=66.43 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=65.3
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
...+..|..+||+.|....+.+++... .....+.|-.+|+++++++.++|+. .+|+++ .+.+|+.. +...+.
T Consensus 15 ~~vvi~f~~~~C~~C~~~~~~l~~~~~----~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~-~~~~g~~~--~~~~g~ 87 (101)
T TIGR01068 15 KPVLVDFWAPWCGPCKMIAPILEELAK----EYEGKVKFVKLNVDENPDIAAKYGIRSIPTLL-LFKNGKEV--DRSVGA 87 (101)
T ss_pred CcEEEEEECCCCHHHHHhCHHHHHHHH----HhcCCeEEEEEECCCCHHHHHHcCCCcCCEEE-EEeCCcEe--eeecCC
Confidence 467889999999999999999988642 1123599999999999999999997 599987 34788864 334445
Q ss_pred cCHHHHHHHHHHH
Q 032418 126 IGVELIQKKIAAA 138 (141)
Q Consensus 126 l~~~~L~~~l~~~ 138 (141)
.+.+.+.+.|+..
T Consensus 88 ~~~~~l~~~l~~~ 100 (101)
T TIGR01068 88 LPKAALKQLINKN 100 (101)
T ss_pred CCHHHHHHHHHhh
Confidence 5677777777654
No 49
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.82 E-value=3.3e-08 Score=64.32 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=62.4
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
.+-+.+|+.+||++|..+++.+++... ...++.+..+|+++++++.++|+. .+|+++ .+.+|+.+. ...+.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~-~~~~g~~~~--~~~g~ 82 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAE-----EYPKVKFVKVDVDENPELAEEYGVRSIPTFL-FFKNGKEVD--RVVGA 82 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHH-----HCCCceEEEEECCCChhHHHhcCcccccEEE-EEECCEEEE--EEecC
Confidence 566899999999999999999999743 135799999999999999999997 699987 347888553 23344
Q ss_pred cCHHHHHHHH
Q 032418 126 IGVELIQKKI 135 (141)
Q Consensus 126 l~~~~L~~~l 135 (141)
...+.|.+.|
T Consensus 83 ~~~~~l~~~i 92 (93)
T cd02947 83 DPKEELEEFL 92 (93)
T ss_pred CCHHHHHHHh
Confidence 4555555544
No 50
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.82 E-value=2.5e-08 Score=79.05 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=58.9
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCccc
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPRI 126 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl 126 (141)
..|++|+.+|||+|+.++..+++... .+..+.+..+|+++++++.++|+. .+|+++. +.+|+. ..| ..
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~-----~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i-~~~~~~-~~G----~~ 203 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFAL-----ANDKILGEMIEANENPDLAEKYGVMSVPKIVI-NKGVEE-FVG----AY 203 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHH-----hcCceEEEEEeCCCCHHHHHHhCCccCCEEEE-ecCCEE-EEC----CC
Confidence 46888999999999999999998742 234688999999999999999998 6999883 345553 223 33
Q ss_pred CHHHHHHHHH
Q 032418 127 GVELIQKKIA 136 (141)
Q Consensus 127 ~~~~L~~~l~ 136 (141)
.++++.+.|.
T Consensus 204 ~~~~l~~~l~ 213 (215)
T TIGR02187 204 PEEQFLEYIL 213 (215)
T ss_pred CHHHHHHHHH
Confidence 4666665554
No 51
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.78 E-value=4.5e-08 Score=66.51 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=65.4
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCc
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSP 124 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~ 124 (141)
....+++|+.+||+.|+...+.+++... ...+..++.+..+|+++++++.++|+. .+|.++. +.+|+. ..+..+
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~-~~~~~~--~~~~~g 87 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAK--ELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKF-FPKGKK--PVDYEG 87 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHH--HhccCCceEEEEEEccchHHHHHhCCCCcCCEEEE-ecCCCc--ceeecC
Confidence 4567999999999999999888877542 111111589999999999999999997 5999873 456654 234556
Q ss_pred ccCHHHHHHHHHHH
Q 032418 125 RIGVELIQKKIAAA 138 (141)
Q Consensus 125 rl~~~~L~~~l~~~ 138 (141)
....++|.+.|.+.
T Consensus 88 ~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 88 GRDLEAIVEFVNEK 101 (102)
T ss_pred CCCHHHHHHHHHhc
Confidence 67788888877653
No 52
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.8e-08 Score=84.60 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=73.1
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCc
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSP 124 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~ 124 (141)
..+-++.|..|||+.|....+.|+++.. .....|.+-++|+|+++.....||. .||+++ .|+||+.+.. +-+
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~----~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~-af~dGqpVdg--F~G 115 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAA----EYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY-AFKDGQPVDG--FQG 115 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHH----HhCCceEEEEecCCcchhHHHHhCcCcCCeEE-EeeCCcCccc--cCC
Confidence 4578999999999999999999999853 2334799999999999999999998 599998 5799998743 557
Q ss_pred ccCHHHHHHHHHHHh
Q 032418 125 RIGVELIQKKIAAAL 139 (141)
Q Consensus 125 rl~~~~L~~~l~~~~ 139 (141)
-..++++++.|...+
T Consensus 116 ~qPesqlr~~ld~~~ 130 (304)
T COG3118 116 AQPESQLRQFLDKVL 130 (304)
T ss_pred CCcHHHHHHHHHHhc
Confidence 788889998887665
No 53
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.77 E-value=6.7e-08 Score=76.65 Aligned_cols=87 Identities=16% Similarity=0.304 Sum_probs=62.2
Q ss_pred CCceEEEEeC---CCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--CCHHHHHHcCC-cCceEEEeccCCeEeeC
Q 032418 46 STRKLVLYSK---PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQY-EIPVLARVLSDGTEEAL 119 (141)
Q Consensus 46 ~~~~VtLYtk---p~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~d~el~~kyg~-~VPVl~~~~idG~~l~~ 119 (141)
....|.+|+. +||+.|+.+++++++... ...++++..+|++ +++++.++|+. .+|+++ .|.||+...
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~-----~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~-~f~~g~~~~- 91 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSE-----VSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTI-ILEEGKDGG- 91 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHh-----hCCCceEEEEecCCcccHHHHHHcCCCccCEEE-EEeCCeeeE-
Confidence 3566888988 999999999999999842 2234566666666 88999999997 599987 457887642
Q ss_pred CCCCcccCHHHHHHHHHHHh
Q 032418 120 PRLSPRIGVELIQKKIAAAL 139 (141)
Q Consensus 120 ~~~~~rl~~~~L~~~l~~~~ 139 (141)
.+..+....+++.+.|.+++
T Consensus 92 ~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 92 IRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred EEEeecCCHHHHHHHHHHHH
Confidence 13334444566666666654
No 54
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.76 E-value=5.5e-08 Score=70.49 Aligned_cols=66 Identities=11% Similarity=0.208 Sum_probs=56.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEee
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEA 118 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~ 118 (141)
..-+..|..|||+.|+.+++.|+++.. ...++.|..+|+++++++.++|+. .+|+++ .+.+|+++.
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la~-----~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l-~fk~G~~v~ 89 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILAK-----KHLETKFIKVNAEKAPFLVEKLNIKVLPTVI-LFKNGKTVD 89 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHH-----HcCCCEEEEEEcccCHHHHHHCCCccCCEEE-EEECCEEEE
Confidence 567889999999999999999999742 234689999999999999999997 599987 568998763
No 55
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.75 E-value=8.8e-08 Score=66.52 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=62.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
...+..|..|||+.|..+++.+++... .....+.+-.+|+++++++.++++. .+|+++ .+.+|+.. .+..+.
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~----~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~-~~~~g~~~--~~~~G~ 91 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAK----EMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLY-VFPSGMNP--EKYYGD 91 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHH----HhcCceEEEEEeCCccHHHHHHcCCCccCEEE-EEcCCCCc--ccCCCC
Confidence 567889999999999999999988753 1223588999999999999999997 599987 35889854 445555
Q ss_pred cCHHHHHH
Q 032418 126 IGVELIQK 133 (141)
Q Consensus 126 l~~~~L~~ 133 (141)
.+.+.|.+
T Consensus 92 ~~~~~l~~ 99 (101)
T cd03003 92 RSKESLVK 99 (101)
T ss_pred CCHHHHHh
Confidence 66666554
No 56
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.74 E-value=5.4e-08 Score=67.29 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=63.4
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcccC
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPRIG 127 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl~ 127 (141)
.+..|..+||+.|....+.+++... .....++.+-.+|+++++++.++|+. .+|.++. +.+|+. .+..+..+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~---~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~-~~~g~~---~~~~G~~~ 91 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFAD---WSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH-AKDGVF---RRYQGPRD 91 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHH---hhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE-eCCCCE---EEecCCCC
Confidence 6899999999999999999988742 11223689999999999999999997 5999884 588874 23445567
Q ss_pred HHHHHHHHH
Q 032418 128 VELIQKKIA 136 (141)
Q Consensus 128 ~~~L~~~l~ 136 (141)
.+.|.+.|.
T Consensus 92 ~~~l~~~i~ 100 (101)
T cd02994 92 KEDLISFIE 100 (101)
T ss_pred HHHHHHHHh
Confidence 777777665
No 57
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.72 E-value=7.2e-08 Score=67.89 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=62.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCc
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSP 124 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~ 124 (141)
..+.+..|+.+||+.|....+.+++... ......+.|..+|++ ++++.++|+. .+|+++ .+.||+.+ +++.+
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~---~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~-~~~~g~~~--~~~~G 89 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKN---ELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFL-FYKNGELV--AVIRG 89 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHH---HcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEE-EEECCEEE--EEEec
Confidence 3567889999999999999999988642 112234789999999 7889999997 599876 45899866 33333
Q ss_pred ccCHHHHHHHHHH
Q 032418 125 RIGVELIQKKIAA 137 (141)
Q Consensus 125 rl~~~~L~~~l~~ 137 (141)
.....+.++|..
T Consensus 90 -~~~~~~~~~i~~ 101 (102)
T cd02948 90 -ANAPLLNKTITE 101 (102)
T ss_pred -CChHHHHHHHhh
Confidence 356777777754
No 58
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.71 E-value=1.1e-07 Score=70.81 Aligned_cols=88 Identities=8% Similarity=-0.000 Sum_probs=65.9
Q ss_pred CceEEEEeCCCCCc--hH--HHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCC
Q 032418 47 TRKLVLYSKPGCCL--CD--GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPR 121 (141)
Q Consensus 47 ~~~VtLYtkp~C~l--C~--~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~ 121 (141)
.+-|..|..+||+. |+ ...+.+.+.+. +.....++.+-.+|++++++++++||. .+|+++ .|.||+.+.
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa--~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~-lfk~G~~v~--- 101 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAA--QVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIY-VFKDDEVIE--- 101 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHH--HHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEE-EEECCEEEE---
Confidence 35577777788876 99 66766666532 101134799999999999999999998 599987 569999663
Q ss_pred CCcccCHHHHHHHHHHHhh
Q 032418 122 LSPRIGVELIQKKIAAALR 140 (141)
Q Consensus 122 ~~~rl~~~~L~~~l~~~~~ 140 (141)
..+....+.|.+.|..+++
T Consensus 102 ~~G~~~~~~l~~~l~~~~~ 120 (120)
T cd03065 102 YDGEFAADTLVEFLLDLIE 120 (120)
T ss_pred eeCCCCHHHHHHHHHHHhC
Confidence 4455678889999988763
No 59
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.71 E-value=6.5e-08 Score=67.51 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=58.7
Q ss_pred CceEEEEeCCCCCchHHHHHHH---HHHhhcCCCCCCCCceeEEEECCC----CHHHHHHcCC-cCceEEEecc--CCeE
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKL---QAAFLLSGPDSLHDVDLQVRDITT----NPEWEKSYQY-EIPVLARVLS--DGTE 116 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L---~~~~~~~~~~~~~~i~~eevDId~----d~el~~kyg~-~VPVl~~~~i--dG~~ 116 (141)
.+.+..|+.+||++|++.+..+ .+... ... .++.+..+|+++ ++++.++|+. .+|+++. +. ||+.
T Consensus 12 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~---~~~-~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~-~~~~~g~~ 86 (104)
T cd02953 12 KPVFVDFTADWCVTCKVNEKVVFSDPEVQA---ALK-KDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF-YGPGGEPE 86 (104)
T ss_pred CeEEEEEEcchhHHHHHHHHHhcCCHHHHH---HHh-CCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE-ECCCCCCC
Confidence 4568899999999999998765 22211 011 168888999987 4678889997 5999884 44 6775
Q ss_pred eeCCCCCcccCHHHHHHHH
Q 032418 117 EALPRLSPRIGVELIQKKI 135 (141)
Q Consensus 117 l~~~~~~~rl~~~~L~~~l 135 (141)
. .+..+..+.+++.+.|
T Consensus 87 ~--~~~~G~~~~~~l~~~l 103 (104)
T cd02953 87 P--LRLPGFLTADEFLEAL 103 (104)
T ss_pred C--cccccccCHHHHHHHh
Confidence 4 5566777788877665
No 60
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.71 E-value=2e-08 Score=71.50 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=49.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH----HHHHHc---CCcCceEEEeccCCeEeeC-CC
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSY---QYEIPVLARVLSDGTEEAL-PR 121 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~----el~~ky---g~~VPVl~~~~idG~~l~~-~~ 121 (141)
|++|++|+|++|.+|+++|++. +++|+++||.+++ ++.+-. +.++-.++. .+|...-. +.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~----------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~--~~~~~~~~l~~ 68 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH----------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFN--TRGTPYRKLGL 68 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc----------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHh--cCCchHHHcCC
Confidence 5799999999999999999996 8999999998764 333333 323333431 34442211 11
Q ss_pred C-CcccCHHHHHHHHHH
Q 032418 122 L-SPRIGVELIQKKIAA 137 (141)
Q Consensus 122 ~-~~rl~~~~L~~~l~~ 137 (141)
. ...++++++.+.|.+
T Consensus 69 ~~~~~ls~~e~~~~l~~ 85 (105)
T cd02977 69 ADKDELSDEEALELMAE 85 (105)
T ss_pred ccccCCCHHHHHHHHHh
Confidence 1 245777777776653
No 61
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.69 E-value=1.7e-07 Score=70.48 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC--HHHHHHcCC-cCceEEEeccCCeEeeCCCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN--PEWEKSYQY-EIPVLARVLSDGTEEALPRL 122 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d--~el~~kyg~-~VPVl~~~~idG~~l~~~~~ 122 (141)
..+.|..|..+||+.|....+.+.+... .....+.|..+|++.+ +++.++|+. .+|.++....+|+.+ +++
T Consensus 20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~----~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v--~~~ 93 (142)
T cd02950 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQ----KYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE--GQS 93 (142)
T ss_pred CCEEEEEEECCcCHHHHHhHHHHHHHHH----HhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE--EEE
Confidence 3467889999999999999999988642 1112578899999865 478899997 599987432478876 445
Q ss_pred CcccCHHHHHHHHHHHhh
Q 032418 123 SPRIGVELIQKKIAAALR 140 (141)
Q Consensus 123 ~~rl~~~~L~~~l~~~~~ 140 (141)
.+....+++.+.|..++.
T Consensus 94 ~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 94 IGLQPKQVLAQNLDALVA 111 (142)
T ss_pred eCCCCHHHHHHHHHHHHc
Confidence 566778888888888764
No 62
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.69 E-value=2.1e-07 Score=66.63 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=62.4
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeC--CCC-
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEAL--PRL- 122 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~--~~~- 122 (141)
...+..|..|||+.|....+.++++.. ...++.|-.+|++++ ++.++|+. .+|+++ .|.||+++.. |..
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~-----~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~-~f~~G~~v~~~~G~~~ 97 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAA-----KYPETKFVKINAEKA-FLVNYLDIKVLPTLL-VYKNGELIDNIVGFEE 97 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCcEEEEEEchhh-HHHHhcCCCcCCEEE-EEECCEEEEEEecHHH
Confidence 567889999999999999999998752 234688999999988 99999998 699987 5689997642 111
Q ss_pred --CcccCHHHHHHHH
Q 032418 123 --SPRIGVELIQKKI 135 (141)
Q Consensus 123 --~~rl~~~~L~~~l 135 (141)
...+.++.|...+
T Consensus 98 ~~~~~~~~~~l~~~l 112 (113)
T cd02957 98 LGGDDFTTEDLEKFL 112 (113)
T ss_pred hCCCCCCHHHHHHHh
Confidence 1446666665543
No 63
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.68 E-value=1.7e-07 Score=66.23 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=60.4
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH---HHHHHcCC-cCceEEEeccCCeEeeCCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQY-EIPVLARVLSDGTEEALPR 121 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~---el~~kyg~-~VPVl~~~~idG~~l~~~~ 121 (141)
....|..|+.+||+.|....+.|++... ...++.|-.+|+++++ ++.++|+. .+|+++ .+.||+.+ .+
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~-----~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~-~~~~G~~v--~~ 86 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSR-----TCNDVVFLLVNGDENDSTMELCRREKIIEVPHFL-FYKDGEKI--HE 86 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHH-----HCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEE-EEeCCeEE--EE
Confidence 4567889999999999999999998742 2246899999999885 78899997 599976 45899865 22
Q ss_pred CCcccCHHHHHHHH
Q 032418 122 LSPRIGVELIQKKI 135 (141)
Q Consensus 122 ~~~rl~~~~L~~~l 135 (141)
..+ ...++|.+.+
T Consensus 87 ~~G-~~~~~l~~~~ 99 (103)
T cd02985 87 EEG-IGPDELIGDV 99 (103)
T ss_pred EeC-CCHHHHHHHH
Confidence 333 2345555544
No 64
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.67 E-value=1.3e-07 Score=65.70 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=59.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCC-eEeeCCCCCc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDG-TEEALPRLSP 124 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG-~~l~~~~~~~ 124 (141)
.+.+..|..+||+.|....+.+++... .....+.+-.+|+++++++.++|+. .+|.++ .+.+| +.. .+..+
T Consensus 20 ~~v~v~f~a~wC~~C~~~~p~~~~~~~----~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~-~~~~g~~~~--~~~~G 92 (104)
T cd03004 20 EPWLVDFYAPWCGPCQALLPELRKAAR----ALKGKVKVGSVDCQKYESLCQQANIRAYPTIR-LYPGNASKY--HSYNG 92 (104)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHH----HhcCCcEEEEEECCchHHHHHHcCCCcccEEE-EEcCCCCCc--eEccC
Confidence 367889999999999999999988753 1123589999999999999999997 599987 45676 543 33334
Q ss_pred ccC-HHHHHH
Q 032418 125 RIG-VELIQK 133 (141)
Q Consensus 125 rl~-~~~L~~ 133 (141)
... .++|.+
T Consensus 93 ~~~~~~~l~~ 102 (104)
T cd03004 93 WHRDADSILE 102 (104)
T ss_pred CCCCHHHHHh
Confidence 343 555554
No 65
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.67 E-value=3.1e-08 Score=71.92 Aligned_cols=35 Identities=34% Similarity=0.609 Sum_probs=32.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
|+||++|+|++|.+|+++|++. +++|+++||.+++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~----------~i~~~~idi~~~~ 35 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH----------GVDYTAIDIVEEP 35 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc----------CCceEEecccCCc
Confidence 5899999999999999999996 8999999999876
No 66
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.65 E-value=1.7e-07 Score=63.89 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=61.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCc
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSP 124 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~ 124 (141)
...-+..|.++||+.|..+++.|++... .....+.+-.+|+++++++.++|+. .+|+++ .+.+|+++.. ..+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~----~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~-~~~~g~~~~~--~~g 86 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAK----EAFPSVLFLSIEAEELPEISEKFEITAVPTFV-FFRNGTIVDR--VSG 86 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHH----HhCCceEEEEEccccCHHHHHhcCCccccEEE-EEECCEEEEE--EeC
Confidence 3566789999999999999999988742 1134789999999999999999997 599977 4589987632 222
Q ss_pred ccCHHHHHHHH
Q 032418 125 RIGVELIQKKI 135 (141)
Q Consensus 125 rl~~~~L~~~l 135 (141)
...++|.++|
T Consensus 87 -~~~~~l~~~~ 96 (97)
T cd02984 87 -ADPKELAKKV 96 (97)
T ss_pred -CCHHHHHHhh
Confidence 2345555544
No 67
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.65 E-value=2e-07 Score=67.17 Aligned_cols=88 Identities=22% Similarity=0.294 Sum_probs=60.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHH---HHhhcCCCCCCCCceeEEEECCCC-------------HHHHHHcCC-cCceEEE
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQ---AAFLLSGPDSLHDVDLQVRDITTN-------------PEWEKSYQY-EIPVLAR 109 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~---~~~~~~~~~~~~~i~~eevDId~d-------------~el~~kyg~-~VPVl~~ 109 (141)
.+.+..|+.+||++|+..++.+. .... ....++.+..+|++++ .++..+|+. .+|+++.
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~ 90 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQA----YIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIF 90 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHH----HHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEE
Confidence 46788999999999999987663 1110 0112578888999875 678889997 5999874
Q ss_pred eccC-CeEeeCCCCCcccCHHHHHHHHHHHhh
Q 032418 110 VLSD-GTEEALPRLSPRIGVELIQKKIAAALR 140 (141)
Q Consensus 110 ~~id-G~~l~~~~~~~rl~~~~L~~~l~~~~~ 140 (141)
...+ |+.+ .++.+....+++.+.|..++.
T Consensus 91 ~~~~gg~~~--~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 91 LDPEGGKEI--ARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred EcCCCCcee--EEecCCCCHHHHHHHHHHHHh
Confidence 4344 5655 344455667777777776654
No 68
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.60 E-value=3.1e-07 Score=60.93 Aligned_cols=49 Identities=24% Similarity=0.486 Sum_probs=39.4
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH--HHHHHcCC-cCceEE
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSYQY-EIPVLA 108 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~--el~~kyg~-~VPVl~ 108 (141)
+++||+.++||+|.+++.+|..+ +++|++++++... ++ +.-+. .||+++
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~----------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~ 52 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYH----------GIPYEVVEVNPVSRKEI-KWSSYKKVPILR 52 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC----------CCceEEEECCchhHHHH-HHhCCCccCEEE
Confidence 58999999999999999999987 8999999997432 33 22333 699998
No 69
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.59 E-value=5e-07 Score=60.70 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=39.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH----HHHHHcCC-cCceEE
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQY-EIPVLA 108 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~----el~~kyg~-~VPVl~ 108 (141)
++||+.++||+|.+++.+|+++ +++|+.+||+.+. ++.+..+. +||++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~----------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~ 55 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL----------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLV 55 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc----------CCcEEEEECCCChHHHHHHHHhCCCCcccEEE
Confidence 6899999999999999999997 8999999998653 33333333 699987
No 70
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.5e-07 Score=67.48 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=62.5
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
..-|+-|+.+||+.|...++.+.++.. .+.++.|-.+|+|++++..++++. .+|+++ .+.+|+... ++.+.
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~-----~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~-f~k~g~~~~--~~vGa 93 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAE-----KYPDVVFLKVDVDELEEVAKEFNVKAMPTFV-FYKGGEEVD--EVVGA 93 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHH-----HCCCCEEEEEecccCHhHHHhcCceEeeEEE-EEECCEEEE--EEecC
Confidence 344677999999999999999999863 444699999999999999999998 599977 458999763 23222
Q ss_pred cCHHHHHHHHHH
Q 032418 126 IGVELIQKKIAA 137 (141)
Q Consensus 126 l~~~~L~~~l~~ 137 (141)
- .+++++.+++
T Consensus 94 ~-~~~l~~~i~~ 104 (106)
T KOG0907|consen 94 N-KAELEKKIAK 104 (106)
T ss_pred C-HHHHHHHHHh
Confidence 2 3366666654
No 71
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.58 E-value=2.6e-07 Score=82.73 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=63.6
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCccc
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPRI 126 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl 126 (141)
.+|.+|..++||+|..+.+.+.+... ...+|+.+.+|+.+.+++.++|+. .||.++ +||+.+..|+.
T Consensus 478 ~~i~v~~~~~C~~Cp~~~~~~~~~~~-----~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~---i~~~~~~~G~~---- 545 (555)
T TIGR03143 478 VNIKIGVSLSCTLCPDVVLAAQRIAS-----LNPNVEAEMIDVSHFPDLKDEYGIMSVPAIV---VDDQQVYFGKK---- 545 (555)
T ss_pred eEEEEEECCCCCCcHHHHHHHHHHHH-----hCCCceEEEEECcccHHHHHhCCceecCEEE---ECCEEEEeeCC----
Confidence 36999999999999999999998853 223799999999999999999998 599999 89998866554
Q ss_pred CHHHHHHHH
Q 032418 127 GVELIQKKI 135 (141)
Q Consensus 127 ~~~~L~~~l 135 (141)
.++++.+.|
T Consensus 546 ~~~~~~~~~ 554 (555)
T TIGR03143 546 TIEEMLELI 554 (555)
T ss_pred CHHHHHHhh
Confidence 577776655
No 72
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.57 E-value=2.2e-07 Score=65.82 Aligned_cols=82 Identities=10% Similarity=0.153 Sum_probs=62.1
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC-CCHHHHHHcCC-cCceEEEeccCCeEeeCCC
Q 032418 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-TNPEWEKSYQY-EIPVLARVLSDGTEEALPR 121 (141)
Q Consensus 44 ~~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId-~d~el~~kyg~-~VPVl~~~~idG~~l~~~~ 121 (141)
....+.+..|..+||+.|....+.+++... ...++.+-.+|.+ +++++.++|+. .+|+++. +.+| .. .+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~-----~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~l-f~~g-~~--~~ 86 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSS-----MFPQIRHLAIEESSIKPSLLSRYGVVGFPTILL-FNST-PR--VR 86 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHH-----HhccCceEEEECCCCCHHHHHhcCCeecCEEEE-EcCC-ce--eE
Confidence 345668999999999999999999998752 2246788889998 78999999997 5999873 4666 32 34
Q ss_pred CCcccCHHHHHHH
Q 032418 122 LSPRIGVELIQKK 134 (141)
Q Consensus 122 ~~~rl~~~~L~~~ 134 (141)
..+..+.+.|.+.
T Consensus 87 ~~G~~~~~~l~~f 99 (100)
T cd02999 87 YNGTRTLDSLAAF 99 (100)
T ss_pred ecCCCCHHHHHhh
Confidence 4555667766654
No 73
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.56 E-value=5.9e-07 Score=73.24 Aligned_cols=88 Identities=14% Similarity=0.163 Sum_probs=68.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCc
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSP 124 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~ 124 (141)
..+.+..|..|||+.|...++.+++... .....+.+..+|+++++++.++|+. .+|+++ .+.+|+...+ ..+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~----~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~-~f~~G~~v~~--~~G 124 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAK----ALKGQVNVADLDATRALNLAKRFAIKGYPTLL-LFDKGKMYQY--EGG 124 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHH----HcCCCeEEEEecCcccHHHHHHcCCCcCCEEE-EEECCEEEEe--eCC
Confidence 3567899999999999999999988743 1122488899999999999999997 599987 4578987643 345
Q ss_pred ccCHHHHHHHHHHHhh
Q 032418 125 RIGVELIQKKIAAALR 140 (141)
Q Consensus 125 rl~~~~L~~~l~~~~~ 140 (141)
..+.+.|.+.+.+.+.
T Consensus 125 ~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 125 DRSTEKLAAFALGDFK 140 (224)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5677778777776653
No 74
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.55 E-value=5.1e-07 Score=60.02 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=58.4
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCC-eEeeCCCCCcc
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDG-TEEALPRLSPR 125 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG-~~l~~~~~~~r 125 (141)
+.+.+|+++||++|..+.+.+++... ......++.+..+|.++++++.++|+. .+|.++. +.+| +.. .+..+.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~-~~~~~~~~--~~~~g~ 91 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAK--ELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKL-FPNGSKEP--VKYEGP 91 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHH--HhccCCceEEEEeeccchHHHHHhCCCCCCCEEEE-EcCCCccc--ccCCCC
Confidence 78999999999999999999988642 111134799999999999999999997 5999874 3445 322 333344
Q ss_pred cCHHHHHH
Q 032418 126 IGVELIQK 133 (141)
Q Consensus 126 l~~~~L~~ 133 (141)
.+.+.+.+
T Consensus 92 ~~~~~i~~ 99 (101)
T cd02961 92 RTLESLVE 99 (101)
T ss_pred cCHHHHHh
Confidence 45555543
No 75
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.55 E-value=2.3e-07 Score=67.60 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=52.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHH-------HHHHcCCcCceEEEeccCCeEeeCCCC
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE-------WEKSYQYEIPVLARVLSDGTEEALPRL 122 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~e-------l~~kyg~~VPVl~~~~idG~~l~~~~~ 122 (141)
|++|+.++|+.|.+|+++|++. +++|+++|+.+++. +.+..|.++--++. ..|+..-.-..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~----------~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin--~~~~~~k~l~~ 68 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN----------GIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLN--TRGQSYRALNT 68 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc----------CCceEEEecCCChhhHHHHHHHHHHcCCCHHHhee--CCCcchhhCCc
Confidence 5799999999999999999996 89999999998763 33455555544442 56664322221
Q ss_pred C---cccCHHHHHHHHHH
Q 032418 123 S---PRIGVELIQKKIAA 137 (141)
Q Consensus 123 ~---~rl~~~~L~~~l~~ 137 (141)
. ..++++++.+.|.+
T Consensus 69 ~~~~~~ls~~e~~~~i~~ 86 (117)
T TIGR01617 69 SNTFLDLSDKEALELLAE 86 (117)
T ss_pred hhhcccCCHHHHHHHHHh
Confidence 1 35676776666543
No 76
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.52 E-value=1.3e-07 Score=70.75 Aligned_cols=35 Identities=29% Similarity=0.656 Sum_probs=33.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
|+||+.|+|+.|.+|+++|++. +++|+++||.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~----------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH----------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc----------CCCcEEeeccCCh
Confidence 8999999999999999999986 8999999999876
No 77
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.52 E-value=3.1e-07 Score=62.82 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=60.1
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCC-CCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDS-LHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~-~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
..+..|..+||+.|....+.+++... ...+ ...+.+-.+|.++++++.++|+. .+|+++. +.+|++. .+..+.
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~--~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~-~~~g~~~--~~~~G~ 92 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAK--KFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL-FKDGEKV--DKYKGT 92 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHH--HHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE-EeCCCee--eEeeCC
Confidence 47889999999999999998877642 1111 12588999999999999999997 5999773 4788854 334455
Q ss_pred cCHHHHHHH
Q 032418 126 IGVELIQKK 134 (141)
Q Consensus 126 l~~~~L~~~ 134 (141)
...+.|.+.
T Consensus 93 ~~~~~l~~~ 101 (102)
T cd03005 93 RDLDSLKEF 101 (102)
T ss_pred CCHHHHHhh
Confidence 566666543
No 78
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.52 E-value=9.4e-07 Score=60.53 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=58.7
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
.+.+.+|..+||+.|...++.+++... .....+.+-.+|+++++++.++|+. .+|+++. +.+|+.. .....+.
T Consensus 19 ~~vlv~f~a~~C~~C~~~~~~~~~~~~----~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~-~~~~~~~-~~~~~g~ 92 (103)
T cd03001 19 DVWLVEFYAPWCGHCKNLAPEWKKAAK----ALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKV-FGAGKNS-PQDYQGG 92 (103)
T ss_pred CcEEEEEECCCCHHHHHHhHHHHHHHH----HhcCCceEEEEECcchHHHHHHCCCCccCEEEE-ECCCCcc-eeecCCC
Confidence 347889999999999999999887642 1123588999999999999999997 5999873 4667322 1223344
Q ss_pred cCHHHHHHH
Q 032418 126 IGVELIQKK 134 (141)
Q Consensus 126 l~~~~L~~~ 134 (141)
.+.+.|.+.
T Consensus 93 ~~~~~l~~~ 101 (103)
T cd03001 93 RTAKAIVSA 101 (103)
T ss_pred CCHHHHHHH
Confidence 556665543
No 79
>PTZ00051 thioredoxin; Provisional
Probab=98.51 E-value=6.7e-07 Score=61.19 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=54.4
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEe
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
...+..|+.+||+.|....+.+++... ...++.|..+|+++++++.++|+. .+|+++ .+.||+..
T Consensus 19 ~~vli~f~~~~C~~C~~~~~~l~~l~~-----~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~-~~~~g~~~ 84 (98)
T PTZ00051 19 ELVIVDFYAEWCGPCKRIAPFYEECSK-----EYTKMVFVKVDVDELSEVAEKENITSMPTFK-VFKNGSVV 84 (98)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHH-----HcCCcEEEEEECcchHHHHHHCCCceeeEEE-EEeCCeEE
Confidence 456889999999999999999988742 223689999999999999999997 599977 45899876
No 80
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.50 E-value=9.5e-07 Score=61.38 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=60.0
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC--CHHHHHHcCC-cCceEEEeccCCeEe---eCC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQY-EIPVLARVLSDGTEE---ALP 120 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~--d~el~~kyg~-~VPVl~~~~idG~~l---~~~ 120 (141)
.+.+..|..+||+.|....+.+++... .....+.+-.+|+++ ++++.++|+. .+|.++. +.+|++. ...
T Consensus 19 ~~~lv~f~a~wC~~C~~~~~~~~~~a~----~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~-~~~~~~~~~~~~~ 93 (109)
T cd03002 19 YTTLVEFYAPWCGHCKNLKPEYAKAAK----ELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV-FRPPKKASKHAVE 93 (109)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHH----HhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE-EeCCCcccccccc
Confidence 457899999999999999999988743 112357888899998 7889999997 5999873 4666521 112
Q ss_pred CCCcccCHHHHHHHH
Q 032418 121 RLSPRIGVELIQKKI 135 (141)
Q Consensus 121 ~~~~rl~~~~L~~~l 135 (141)
...+....+.|.+.|
T Consensus 94 ~~~G~~~~~~l~~fi 108 (109)
T cd03002 94 DYNGERSAKAIVDFV 108 (109)
T ss_pred cccCccCHHHHHHHh
Confidence 334555666666554
No 81
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.50 E-value=7.5e-07 Score=62.63 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=58.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhh-cCCCCC-CCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFL-LSGPDS-LHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLS 123 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~-~~~~~~-~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~ 123 (141)
...++.|..|||+.|.+.++.+++... +.+... ...+.+-.+|+++++++.++|+. .+|.++ .+.+|+... ....
T Consensus 19 ~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~-~~~~g~~~~-~~~~ 96 (108)
T cd02996 19 ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLK-LFRNGMMMK-REYR 96 (108)
T ss_pred CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEE-EEeCCcCcc-eecC
Confidence 346889999999999999999987532 000001 12488999999999999999997 599987 458898321 2223
Q ss_pred cccCHHHHHH
Q 032418 124 PRIGVELIQK 133 (141)
Q Consensus 124 ~rl~~~~L~~ 133 (141)
+..+.+.|.+
T Consensus 97 g~~~~~~l~~ 106 (108)
T cd02996 97 GQRSVEALAE 106 (108)
T ss_pred CCCCHHHHHh
Confidence 3444555544
No 82
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.47 E-value=7.6e-07 Score=60.92 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=59.4
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC--CHHHHHHcCC-cCceEEEeccCCeEeeCCCCC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQY-EIPVLARVLSDGTEEALPRLS 123 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~--d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~ 123 (141)
...+..|+.+||+.|..+.+.+.+.... ......+.+-.+|+++ ++++.++|+. .+|.++ .+.+|+.. ....
T Consensus 18 ~~~~v~f~a~wC~~C~~~~~~~~~~~~~--~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~-~~~~g~~~--~~~~ 92 (104)
T cd02997 18 KHVLVMFYAPWCGHCKKMKPEFTKAATE--LKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK-YFENGKFV--EKYE 92 (104)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHH--HhhCCceEEEEEECCCCccHHHHHhCCCccccEEE-EEeCCCee--EEeC
Confidence 3678999999999999999888776421 1111347888899998 8899999998 699977 45788854 2344
Q ss_pred cccCHHHHHH
Q 032418 124 PRIGVELIQK 133 (141)
Q Consensus 124 ~rl~~~~L~~ 133 (141)
+....+.+.+
T Consensus 93 g~~~~~~l~~ 102 (104)
T cd02997 93 GERTAEDIIE 102 (104)
T ss_pred CCCCHHHHHh
Confidence 5555666554
No 83
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.47 E-value=4.8e-07 Score=56.17 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=42.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH----HHHHHcCC-cCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~----el~~kyg~-~VPVl~~~~idG~~l 117 (141)
++||+.++||+|.+++.+|+.. +++|+.++++.++ ++.+..+. .+|++. .+|+.+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~---~~~~~~ 60 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEK----------GLPYELVPVDLGEGEQEEFLALNPLGKVPVLE---DGGLVL 60 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHc----------CCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEE---ECCEEE
Confidence 3799999999999999999986 6788888887433 24444444 699998 677755
No 84
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.47 E-value=7.7e-07 Score=78.74 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=63.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCccc
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPRI 126 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl 126 (141)
..|++|..++||+|..+...+.+.+. ....|+.+.+|..+.|++.++|+. .||.++ +||+.+..|...
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~-----~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~---i~~~~~~~g~~~--- 186 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAV-----LNPNITHTMIDGALFQDEVEARNIMAVPTVF---LNGEEFGQGRMT--- 186 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHH-----hCCCceEEEEEchhCHhHHHhcCCcccCEEE---ECCcEEEecCCC---
Confidence 46999999999999999999998863 234799999999999999999997 599998 799887665544
Q ss_pred CHHHHHHHHH
Q 032418 127 GVELIQKKIA 136 (141)
Q Consensus 127 ~~~~L~~~l~ 136 (141)
.+++.+++.
T Consensus 187 -~~~~~~~~~ 195 (517)
T PRK15317 187 -LEEILAKLD 195 (517)
T ss_pred -HHHHHHHHh
Confidence 556665554
No 85
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.47 E-value=2.2e-06 Score=63.86 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=67.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCC-ceeEEEECCCCHHHHHHcCCc-CceEEEeccCCeEee--CCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTEEA--LPR 121 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~-i~~eevDId~d~el~~kyg~~-VPVl~~~~idG~~l~--~~~ 121 (141)
...-|.-|+++||+.|...-+.|++.+. ...+ +.|-.||+|+.+++.++|+.. +|+.+ .+.||+++- +|.
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~-----~~~~~~~f~kVDVDev~dva~~y~I~amPtfv-ffkngkh~~~d~gt 87 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSH-----DLSKMASIYLVDVDKVPVYTQYFDISYIPSTI-FFFNGQHMKVDYGS 87 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHH-----HccCceEEEEEeccccHHHHHhcCceeCcEEE-EEECCcEEEEecCC
Confidence 3456778999999999999999999852 2234 889999999999999999986 99977 568999753 555
Q ss_pred CCcc------cCHHHHHHHHHHHhh
Q 032418 122 LSPR------IGVELIQKKIAAALR 140 (141)
Q Consensus 122 ~~~r------l~~~~L~~~l~~~~~ 140 (141)
-++. -+.+++..-+..+||
T Consensus 88 ~~~~k~~~~~~~k~~~idi~e~~yr 112 (114)
T cd02986 88 PDHTKFVGSFKTKQDFIDLIEVIYR 112 (114)
T ss_pred CCCcEEEEEcCchhHHHHHHHHHHc
Confidence 4433 233556666666554
No 86
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.44 E-value=9.8e-07 Score=78.15 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=64.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
..+|++|..++||+|..+...+.+.+. .+..|+.+.+|..+.|++.++|+. .||.++ +||+.+..|...
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~-----~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~---i~~~~~~~g~~~-- 187 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMAL-----LNPNISHTMIDGALFQDEVEALGIQGVPAVF---LNGEEFHNGRMD-- 187 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHH-----hCCCceEEEEEchhCHHHHHhcCCcccCEEE---ECCcEEEecCCC--
Confidence 347999999999999999999988753 334799999999999999999997 599998 799888666554
Q ss_pred cCHHHHHHHHHH
Q 032418 126 IGVELIQKKIAA 137 (141)
Q Consensus 126 l~~~~L~~~l~~ 137 (141)
.+++.+.+.+
T Consensus 188 --~~~~~~~l~~ 197 (515)
T TIGR03140 188 --LAELLEKLEE 197 (515)
T ss_pred --HHHHHHHHhh
Confidence 5555555543
No 87
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.44 E-value=1.4e-06 Score=63.90 Aligned_cols=80 Identities=10% Similarity=0.080 Sum_probs=58.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHH-HHcCC-cCceEEEeccCCeEeeCCCCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWE-KSYQY-EIPVLARVLSDGTEEALPRLS 123 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~-~kyg~-~VPVl~~~~idG~~l~~~~~~ 123 (141)
....+..|..|||+.|+.+++.+++... .....+.+-.||+++++++. ++|+. .+|++. .|.||+.. .+..
T Consensus 29 ~~~vlV~FyA~WC~~Ck~l~p~~~~la~----~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~-lf~~g~~~--~~y~ 101 (113)
T cd03006 29 AEVSLVMYYAPWDAQSQAARQEFEQVAQ----KLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIH-LYYRSRGP--IEYK 101 (113)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHH----HhcCCeEEEEEECCCChHHHHHhcCCcccCEEE-EEECCccc--eEEe
Confidence 3456889999999999999999998753 11124889999999999988 58996 699987 45888853 2233
Q ss_pred cccCHHHHH
Q 032418 124 PRIGVELIQ 132 (141)
Q Consensus 124 ~rl~~~~L~ 132 (141)
+..+.+.+.
T Consensus 102 G~~~~~~i~ 110 (113)
T cd03006 102 GPMRAPYME 110 (113)
T ss_pred CCCCHHHHH
Confidence 444444443
No 88
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.43 E-value=9.2e-07 Score=68.13 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=55.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-c------CceEEEeccCCeEee
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-E------IPVLARVLSDGTEEA 118 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~------VPVl~~~~idG~~l~ 118 (141)
...+..|..|||+.|+...+.+++... .....++.+-.+|+++++++.++|+. . +|+++ .|.||+++.
T Consensus 48 ~~vvV~Fya~wC~~Ck~l~p~l~~la~---~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~i-lf~~Gk~v~ 122 (152)
T cd02962 48 VTWLVEFFTTWSPECVNFAPVFAELSL---KYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTII-LFQGGKEVA 122 (152)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHH---HcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEE-EEECCEEEE
Confidence 456899999999999999999998753 11223599999999999999999986 4 89987 568999873
No 89
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.42 E-value=4.4e-07 Score=66.03 Aligned_cols=35 Identities=26% Similarity=0.650 Sum_probs=32.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
|++|+.++|+.|.+|+++|++. +++|+.+||.+++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~----------gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH----------QIPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC----------CCceEEEecCCCc
Confidence 7899999999999999999996 8999999998774
No 90
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.41 E-value=2.3e-06 Score=58.85 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=66.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC---cCceEEEeccC--CeEeeCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY---EIPVLARVLSD--GTEEALP 120 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~---~VPVl~~~~id--G~~l~~~ 120 (141)
..+.+.+|..+||+.|+..++.+++.+. .....+.|..+|+++++++.+.+|. .+|++.. +.+ |+. ++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~----~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~-~~~~~~~k--~~ 84 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAK----KFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAI-INLSDGKK--YL 84 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHH----HhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEE-Eecccccc--cC
Confidence 4578899999999999999999998753 2224699999999999999999986 5999874 355 543 34
Q ss_pred CCCcccCHHHHHHHHHHH
Q 032418 121 RLSPRIGVELIQKKIAAA 138 (141)
Q Consensus 121 ~~~~rl~~~~L~~~l~~~ 138 (141)
...+.++.+.|.+.+.+.
T Consensus 85 ~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 85 MPEEELTAESLEEFVEDF 102 (103)
T ss_pred CCccccCHHHHHHHHHhh
Confidence 444556788888888764
No 91
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.37 E-value=2.6e-06 Score=59.64 Aligned_cols=86 Identities=15% Similarity=0.069 Sum_probs=61.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCC-CCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDS-LHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLS 123 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~-~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~ 123 (141)
....+..|..+||+.|.+..+.+++... +... ..++.+..+|+++++++.++|+. .+|+++. +.+|.. .+..
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~--~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l-~~~~~~---~~~~ 88 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGA--ELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKL-LKGDLA---YNYR 88 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHH--HHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEE-EcCCCc---eeec
Confidence 3567899999999999999999987642 1011 12478888999999999999997 6999873 345533 2344
Q ss_pred cccCHHHHHHHHHH
Q 032418 124 PRIGVELIQKKIAA 137 (141)
Q Consensus 124 ~rl~~~~L~~~l~~ 137 (141)
+..+.+.|.+.++.
T Consensus 89 G~~~~~~l~~~~~~ 102 (104)
T cd03000 89 GPRTKDDIVEFANR 102 (104)
T ss_pred CCCCHHHHHHHHHh
Confidence 55677777776654
No 92
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.37 E-value=3.5e-06 Score=65.80 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=64.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeC--CCC-
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEAL--PRL- 122 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~--~~~- 122 (141)
...|..|.++||+.|..+.+.|++++. ....+.|..||++++ ++..+|+. .+|+++ .+.||+.+.. |..
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~-----~~~~vkF~kVd~d~~-~l~~~f~v~~vPTll-lyk~G~~v~~~vG~~~ 156 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAA-----EYPAVKFCKIRASAT-GASDEFDTDALPALL-VYKGGELIGNFVRVTE 156 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHH-----HCCCeEEEEEeccch-hhHHhCCCCCCCEEE-EEECCEEEEEEechHH
Confidence 467888999999999999999998853 234689999999987 88999997 599987 5689997641 222
Q ss_pred --CcccCHHHHHHHHHH
Q 032418 123 --SPRIGVELIQKKIAA 137 (141)
Q Consensus 123 --~~rl~~~~L~~~l~~ 137 (141)
...+..+.|...|..
T Consensus 157 ~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 157 DLGEDFDAEDLESFLVE 173 (175)
T ss_pred hcCCCCCHHHHHHHHHh
Confidence 146777777776653
No 93
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.36 E-value=6.2e-07 Score=62.75 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=55.2
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH--------------------HHHHHcCC-c
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--------------------EWEKSYQY-E 103 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~--------------------el~~kyg~-~ 103 (141)
...+.|.+|+.||||+|+++.+.+.+...+.. .-..++.+..+|++++. ++.++||. .
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVAR-YLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHC-EEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH-HhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 34567999999999999999888875211100 01124777888887543 46778887 5
Q ss_pred CceEEEeccCCeEeeCCCCCcccCHHHHHHHH
Q 032418 104 IPVLARVLSDGTEEALPRLSPRIGVELIQKKI 135 (141)
Q Consensus 104 VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l 135 (141)
.|+++....||+.+ ..+.+..+.+++.+.|
T Consensus 83 tPt~~~~d~~G~~v--~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIV--YRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEE--EEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEE--EEecCCCCHHHHHhhC
Confidence 99988433458866 3356677788877654
No 94
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.35 E-value=2e-06 Score=56.51 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=41.2
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC---CHHHHHHcCC-cCceEEEeccCCeEe
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~---d~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
+||+.++||+|.+++-.|+++ +++|+.++++- .+++.+.... +||++.. .||+.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~----------gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~--~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA----------GITVELREVELKNKPAEMLAASPKGTVPVLVL--GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc----------CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE--CCCcEE
Confidence 699999999999999999987 67777777762 3455554444 6999972 247655
No 95
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.35 E-value=6.6e-07 Score=67.26 Aligned_cols=35 Identities=29% Similarity=0.616 Sum_probs=32.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
|++|+.|+|+.|.+|+++|++. +++|+++|+.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~----------gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN----------QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc----------CCCeEEEEeeCCc
Confidence 8899999999999999999986 8999999999765
No 96
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.35 E-value=7.4e-07 Score=67.07 Aligned_cols=35 Identities=20% Similarity=0.508 Sum_probs=32.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
|+||+.|+|+.|.+|+++|++. +++|+++|+.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~----------~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH----------QLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc----------CCCeEEEECCCCC
Confidence 8899999999999999999986 8999999999764
No 97
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.33 E-value=4.9e-06 Score=56.67 Aligned_cols=84 Identities=21% Similarity=0.249 Sum_probs=59.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-CHHHHHHcCC-cCceEEEeccCCeEeeCCCCCc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-NPEWEKSYQY-EIPVLARVLSDGTEEALPRLSP 124 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~ 124 (141)
.+.+..|+.+||+.|...++.++.... ......++.+-.+|.++ ++++.++|+. .+|.++. +.+|... .....+
T Consensus 19 ~~~~v~f~a~~C~~C~~~~~~~~~~~~--~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~-~~~~~~~-~~~~~g 94 (105)
T cd02998 19 KDVLVEFYAPWCGHCKNLAPEYEKLAA--VFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF-FPKGSTE-PVKYEG 94 (105)
T ss_pred CcEEEEEECCCCHHHHhhChHHHHHHH--HhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE-EeCCCCC-ccccCC
Confidence 467889999999999999999887642 11112358899999999 8999999997 5999873 3555211 123445
Q ss_pred ccCHHHHHHH
Q 032418 125 RIGVELIQKK 134 (141)
Q Consensus 125 rl~~~~L~~~ 134 (141)
....+.|.+.
T Consensus 95 ~~~~~~l~~~ 104 (105)
T cd02998 95 GRDLEDLVKF 104 (105)
T ss_pred ccCHHHHHhh
Confidence 5666666553
No 98
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.31 E-value=7.6e-07 Score=64.47 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=32.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
|++|+.|+|+.|++|+++|++. +++|+++|+.++|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~----------~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR----------GVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc----------CCCeEEEecccCC
Confidence 5899999999999999999986 8999999999875
No 99
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.26 E-value=4.5e-06 Score=54.28 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=40.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC---HHHHHHcCC-cCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN---PEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d---~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
++||+.++|++|.+++..|+.+ |++|+.++++-. +++.+.... .||++. .+|..+
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~----------gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~---~~~~~l 59 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEK----------GVSVEIIDVDPDNPPEDLAELNPYGTVPTLV---DRDLVL 59 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHc----------CCccEEEEcCCCCCCHHHHhhCCCCCCCEEE---ECCEEE
Confidence 4799999999999999999987 788888877732 344443333 699987 566544
No 100
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.24 E-value=7.3e-06 Score=55.87 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=55.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcC-CcCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ-YEIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg-~~VPVl~~~~idG~~l~~~~~~~r 125 (141)
...+.+|..+||+.|....+.+++... ...+...+.+..+|.++++ +...++ ..+|.++ .+.+|+.....+..+.
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~--~~~~~~~~~~~~id~~~~~-~~~~~~~~~~Pt~~-~~~~~~~~~~~~~~g~ 94 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAE--KLKGDDNVVIAKMDATAND-VPSEFVVDGFPTIL-FFPAGDKSNPIKYEGD 94 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHH--HhcCCCCEEEEEEeCcchh-hhhhccCCCCCEEE-EEcCCCcCCceEccCC
Confidence 457889999999999999999988742 1111235888999998874 566677 5799987 3466762111223344
Q ss_pred cCHHHHHH
Q 032418 126 IGVELIQK 133 (141)
Q Consensus 126 l~~~~L~~ 133 (141)
.+.+.+.+
T Consensus 95 ~~~~~l~~ 102 (104)
T cd02995 95 RTLEDLIK 102 (104)
T ss_pred cCHHHHHh
Confidence 45555544
No 101
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.24 E-value=7.7e-06 Score=56.48 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=44.6
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC--C-HHHHHHcCC-cCceEEEeccC-CeEe
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N-PEWEKSYQY-EIPVLARVLSD-GTEE 117 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~--d-~el~~kyg~-~VPVl~~~~id-G~~l 117 (141)
.....++||+.+.||+|.+++..|..+ +++|+.++++. . +++.+.... .||++. .| |..+
T Consensus 14 ~~~~~~~Ly~~~~sp~~~kv~~~L~~~----------gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~---~~~g~~l 78 (89)
T cd03055 14 PVPGIIRLYSMRFCPYAQRARLVLAAK----------NIPHEVININLKDKPDWFLEKNPQGKVPALE---IDEGKVV 78 (89)
T ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHc----------CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEE---ECCCCEE
Confidence 345679999999999999999999987 78888888773 2 334444334 699998 55 6654
No 102
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.22 E-value=6.4e-06 Score=53.81 Aligned_cols=55 Identities=24% Similarity=0.451 Sum_probs=41.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--CC----HHHHHHcCC-cCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~d----~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
++||+.++|+.|.+++..|+.+ |++|+.++|+ ++ +++.+.... .||++. .+|..+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~----------gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~---~~~~~l 62 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKAL----------GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV---DNGFVL 62 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHc----------CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE---ECCEEE
Confidence 4799999999999999999987 7888887776 22 445544434 699997 567654
No 103
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.15 E-value=1.5e-05 Score=59.40 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=50.3
Q ss_pred CceEEEEeC-------CCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC-------HHHHHHcCC--cCceEEEe
Q 032418 47 TRKLVLYSK-------PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-------PEWEKSYQY--EIPVLARV 110 (141)
Q Consensus 47 ~~~VtLYtk-------p~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d-------~el~~kyg~--~VPVl~~~ 110 (141)
.+.+..|.. +||+.|..+++.|++... ....++.|..||++++ .++..+|+. .||+++.
T Consensus 22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~----~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~- 96 (119)
T cd02952 22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREALK----AAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR- 96 (119)
T ss_pred CeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHH----HCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE-
Confidence 466888999 999999999999998742 1122589999999874 478888885 5999884
Q ss_pred ccCCeEe
Q 032418 111 LSDGTEE 117 (141)
Q Consensus 111 ~idG~~l 117 (141)
+.+|+.+
T Consensus 97 ~~~~~~l 103 (119)
T cd02952 97 WKTPQRL 103 (119)
T ss_pred EcCCcee
Confidence 4556544
No 104
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.14 E-value=1.6e-05 Score=56.32 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=48.8
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-CHHHHH-HcCC-cCceEEEeccCCe
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-NPEWEK-SYQY-EIPVLARVLSDGT 115 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-d~el~~-kyg~-~VPVl~~~~idG~ 115 (141)
..+.+..|..+||+.|.++++.+++... . ....++.+-.+|++. +..+.. .++. .+|.++. |.+|.
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~--~-~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~-f~~~~ 89 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAE--K-LAGSNVKVAKFNADGEQREFAKEELQLKSFPTILF-FPKNS 89 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHH--H-hccCCeEEEEEECCccchhhHHhhcCCCcCCEEEE-EcCCC
Confidence 3578999999999999999999988642 1 122358899999997 566665 4787 6999873 45553
No 105
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.13 E-value=8.7e-06 Score=53.26 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=40.7
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH--HHHHHcCC-cCceEEEeccC-CeEe
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSYQY-EIPVLARVLSD-GTEE 117 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~--el~~kyg~-~VPVl~~~~id-G~~l 117 (141)
+||+.++||+|.+++-.|..+ |++|+.++++.++ ...+..+. .||+++ .| |..+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~----------gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~---~~~~~~l 59 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLK----------NIPVEQIILQNDDEATPIRMIGAKQVPILE---KDDGSFM 59 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHc----------CCCeEEEECCCCchHHHHHhcCCCccCEEE---eCCCeEe
Confidence 599999999999999999987 8999999888543 22233333 699997 44 6544
No 106
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.12 E-value=2.8e-05 Score=64.69 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=61.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-----------CHHHHHHcCC-cCceEEEeccC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----------NPEWEKSYQY-EIPVLARVLSD 113 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-----------d~el~~kyg~-~VPVl~~~~id 113 (141)
....+..|.++||++|+.....|++.. ...++.+..|++|. |..+.+++|. .+|.++.+..+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la------~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFE------DRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD 239 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHH------HHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence 456788999999999999999999884 33578888899886 3567889997 69999854333
Q ss_pred CeEe---eCCCCCcccCHHHHHHHHHHH
Q 032418 114 GTEE---ALPRLSPRIGVELIQKKIAAA 138 (141)
Q Consensus 114 G~~l---~~~~~~~rl~~~~L~~~l~~~ 138 (141)
|+.+ .+|. +++++|.++|..+
T Consensus 240 ~~~v~~v~~G~----~s~~eL~~~i~~~ 263 (271)
T TIGR02740 240 PNQFTPIGFGV----MSADELVDRILLA 263 (271)
T ss_pred CCEEEEEEeCC----CCHHHHHHHHHHH
Confidence 4433 3343 5578888877654
No 107
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.09 E-value=1.5e-05 Score=51.43 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=39.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--C----CHHHHHHcCC-cCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T----NPEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~----d~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
++||+.++|++|.+++..|+.+ +++|+.++|+ . .+++.+.... .||++.. .||..+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~----------~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~~l 63 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEK----------GIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL--DDGTVI 63 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHc----------CCCceEEEeecccCccCCHHHHhhCCCCCCCEEEe--CCCCEE
Confidence 3799999999999999999987 6777666665 2 2344444444 6999972 355544
No 108
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.07 E-value=2e-05 Score=50.91 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=41.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC--C----HHHHHHcC-CcCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N----PEWEKSYQ-YEIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~--d----~el~~kyg-~~VPVl~~~~idG~~l 117 (141)
++||+.+.|+.|.+++-.|+.+ +++|+.++|+. + +++.+... ..+|++. .+|+.+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~---~~~~~i 62 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALL----------GIPYEWVEVDILKGETRTPEFLALNPNGEVPVLE---LDGRVL 62 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHc----------CCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEE---ECCEEE
Confidence 4799999999999999999987 78888888862 1 23333332 3699998 567655
No 109
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.07 E-value=3.3e-05 Score=51.42 Aligned_cols=68 Identities=21% Similarity=0.325 Sum_probs=50.1
Q ss_pred EEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC---CHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcccC
Q 032418 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPRIG 127 (141)
Q Consensus 52 LYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~---d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl~ 127 (141)
||+.++||+|.+++-.|+.+ +++|+.++++. .+++.+.... .||++. .||+.+.-
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~----------~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~---~~g~~l~d-------- 59 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK----------GIPYELVPVDPEEKRPEFLKLNPKGKVPVLV---DDGEVLTD-------- 59 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH----------TEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE---ETTEEEES--------
T ss_pred CCCcCCChHHHHHHHHHHHc----------CCeEEEeccCcccchhHHHhhcccccceEEE---ECCEEEeC--------
Confidence 79999999999999999998 78888888773 2455555554 699998 68886632
Q ss_pred HHHHHHHHHHHhh
Q 032418 128 VELIQKKIAAALR 140 (141)
Q Consensus 128 ~~~L~~~l~~~~~ 140 (141)
-..+.+.|.+.+.
T Consensus 60 S~~I~~yL~~~~~ 72 (75)
T PF13417_consen 60 SAAIIEYLEERYP 72 (75)
T ss_dssp HHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcC
Confidence 4455666665543
No 110
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.05 E-value=2.2e-05 Score=71.29 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=62.5
Q ss_pred ceEEEEeCCCCCchHHHHHHH---HHHhhcCCCCCCCCceeEEEECCCC----HHHHHHcCC-cCceEEEeccCCeEeeC
Q 032418 48 RKLVLYSKPGCCLCDGLKEKL---QAAFLLSGPDSLHDVDLQVRDITTN----PEWEKSYQY-EIPVLARVLSDGTEEAL 119 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L---~~~~~~~~~~~~~~i~~eevDId~d----~el~~kyg~-~VPVl~~~~idG~~l~~ 119 (141)
+.+..|+.+||+.|+..++.. .+... ...++.+..+|++++ .++.++|+. .+|+++....||+++..
T Consensus 476 ~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~-----~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~ 550 (571)
T PRK00293 476 PVMLDLYADWCVACKEFEKYTFSDPQVQQ-----ALADTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPD 550 (571)
T ss_pred cEEEEEECCcCHhHHHHHHHhcCCHHHHH-----HhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCccc
Confidence 457789999999999987753 22210 113688889999864 578889997 59998743347887655
Q ss_pred CCCCcccCHHHHHHHHHHH
Q 032418 120 PRLSPRIGVELIQKKIAAA 138 (141)
Q Consensus 120 ~~~~~rl~~~~L~~~l~~~ 138 (141)
.+..+..+.+++.+.|+++
T Consensus 551 ~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 551 ARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred ccccCCCCHHHHHHHHHHh
Confidence 6667777888888888764
No 111
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.02 E-value=5.4e-06 Score=60.97 Aligned_cols=35 Identities=40% Similarity=0.750 Sum_probs=32.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
|+||+.|+|..|++|+++|++. +++|+++|+.+++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~----------gi~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA----------GHEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------CCCcEEeehhcCC
Confidence 7899999999999999999996 8999999999764
No 112
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.02 E-value=1.1e-05 Score=59.02 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=48.9
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH-HHHHHcCC---cCceEEEeccCCeEee
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-EWEKSYQY---EIPVLARVLSDGTEEA 118 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~-el~~kyg~---~VPVl~~~~idG~~l~ 118 (141)
..+-+..|+.+||++|+...+.+.+.... ......|..+|+++++ ...++|+. .+|.++....||+++.
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~----~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKEI----SELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHHH----HhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 34668889999999999999998875321 1124578889999775 34466765 2999884335888753
No 113
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.01 E-value=3.5e-05 Score=62.23 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=62.3
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-----------CHHHHHHcCC-cCceEEEeccCC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----------NPEWEKSYQY-EIPVLARVLSDG 114 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-----------d~el~~kyg~-~VPVl~~~~idG 114 (141)
.-.+.+|.+++|++|+....+|.... ...|+++..|++|. |++..+++|. .+|.++.+..++
T Consensus 121 ~~gL~~F~~~~C~~C~~~~pil~~~~------~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 121 KYGLFFFYRSDCPYCQQQAPILQQFA------DKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred CeEEEEEEcCCCchhHHHHHHHHHHH------HHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence 44688999999999999999999984 45699999999983 5788899997 599999766666
Q ss_pred e---EeeCCCCCcccCHHHHHHHH
Q 032418 115 T---EEALPRLSPRIGVELIQKKI 135 (141)
Q Consensus 115 ~---~l~~~~~~~rl~~~~L~~~l 135 (141)
+ .+.+|.++ +++|.++|
T Consensus 195 ~~~~pv~~G~~s----~~~L~~ri 214 (215)
T PF13728_consen 195 KKWYPVSQGFMS----LDELEDRI 214 (215)
T ss_pred CeEEEEeeecCC----HHHHHHhh
Confidence 3 35556554 77777765
No 114
>PTZ00102 disulphide isomerase; Provisional
Probab=98.01 E-value=3.6e-05 Score=66.23 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=65.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCC-CCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGP-DSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSP 124 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~-~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~ 124 (141)
...++.|..|||+.|++..+.+.+... .. ....++.+-.+|.+++.++.++|+. .+|.+. .+.+|+.+ +..+
T Consensus 50 ~~~lv~f~a~wC~~Ck~~~p~~~~~a~--~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~-~~~~g~~~---~y~g 123 (477)
T PTZ00102 50 EIVLVKFYAPWCGHCKRLAPEYKKAAK--MLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK-FFNKGNPV---NYSG 123 (477)
T ss_pred CcEEEEEECCCCHHHHHhhHHHHHHHH--HHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE-EEECCceE---EecC
Confidence 467899999999999999987766421 00 1123689999999999999999997 699987 45777765 3344
Q ss_pred ccCHHHHHHHHHHHhh
Q 032418 125 RIGVELIQKKIAAALR 140 (141)
Q Consensus 125 rl~~~~L~~~l~~~~~ 140 (141)
..+.+.+.+.+...++
T Consensus 124 ~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 124 GRTADGIVSWIKKLTG 139 (477)
T ss_pred CCCHHHHHHHHHHhhC
Confidence 5577788777776543
No 115
>PRK10026 arsenate reductase; Provisional
Probab=97.95 E-value=1.4e-05 Score=61.27 Aligned_cols=38 Identities=13% Similarity=0.370 Sum_probs=34.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
|.+|++|+.|+|.-|.+|+++|++. +++|+++|+.+++
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~----------gi~~~~~d~~~~p 38 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNS----------GTEPTIIHYLETP 38 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHC----------CCCcEEEeeeCCC
Confidence 4579999999999999999999986 8999999998764
No 116
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.94 E-value=6.1e-05 Score=57.95 Aligned_cols=86 Identities=14% Similarity=0.206 Sum_probs=59.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC------------HHHHH-Hc---CC-cCceEEE
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN------------PEWEK-SY---QY-EIPVLAR 109 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d------------~el~~-ky---g~-~VPVl~~ 109 (141)
..++..|..+||++|++..+.|.+... +.++.+.-|+++++ ++... .| +. .+|..+.
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~------~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQ------QFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHH------HcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 456999999999999999999998742 33677878888753 33333 34 43 5899886
Q ss_pred eccCCeEeeCCCCCcccCHHHHHHHHHHHh
Q 032418 110 VLSDGTEEALPRLSPRIGVELIQKKIAAAL 139 (141)
Q Consensus 110 ~~idG~~l~~~~~~~rl~~~~L~~~l~~~~ 139 (141)
+..+|..+. ....+..+++++.+.|..+|
T Consensus 125 ID~~G~~i~-~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 125 VNVNTRKAY-PVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred EeCCCCEEE-EEeecccCHHHHHHHHHHhC
Confidence 545665431 22334566888888887764
No 117
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.94 E-value=5.6e-05 Score=60.22 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=61.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC-----------H--HHHHHcC---CcCceEEEecc
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----------P--EWEKSYQ---YEIPVLARVLS 112 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d-----------~--el~~kyg---~~VPVl~~~~i 112 (141)
++.+|..+|||+|.+.-+.|++.. +..++++.-|+++++ . ...+.|| ..+|..+.+..
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~------~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~ 145 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLA------QQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNV 145 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHH------HHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeC
Confidence 488999999999999999998874 334788888888743 1 2455788 37999987667
Q ss_pred CCeEeeCCCCCcccCHHHHHHHHHHHhh
Q 032418 113 DGTEEALPRLSPRIGVELIQKKIAAALR 140 (141)
Q Consensus 113 dG~~l~~~~~~~rl~~~~L~~~l~~~~~ 140 (141)
+|+.. +....+..+++++.++|..++.
T Consensus 146 ~G~i~-~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 146 NTLEA-LPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred CCcEE-EEEEECCCCHHHHHHHHHHHHh
Confidence 88752 1112244558888888888764
No 118
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.93 E-value=5.7e-05 Score=63.94 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=63.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
...+..|..|||+.|....+.+.+....-. ....++.+..+|.++++++.++|+. .+|+++ .+.+|+.. .....+.
T Consensus 19 ~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~-~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~-~~~~g~~~-~~~~~g~ 95 (462)
T TIGR01130 19 EFVLVEFYAPWCGHCKSLAPEYEKAADELK-KKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK-IFRNGEDS-VSDYNGP 95 (462)
T ss_pred CCEEEEEECCCCHHHHhhhHHHHHHHHHHh-hcCCceEEEEEECCCcHHHHHhCCCccccEEE-EEeCCccc-eeEecCC
Confidence 356889999999999999988876432000 0112489999999999999999997 599987 45778751 1223344
Q ss_pred cCHHHHHHHHHHHh
Q 032418 126 IGVELIQKKIAAAL 139 (141)
Q Consensus 126 l~~~~L~~~l~~~~ 139 (141)
.+.+.+.+.+.+.+
T Consensus 96 ~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 96 RDADGIVKYMKKQS 109 (462)
T ss_pred CCHHHHHHHHHHhc
Confidence 56777777776654
No 119
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.91 E-value=4.6e-06 Score=62.55 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=49.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHc----CCcCceEEEeccCCeEeeCCCC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY----QYEIPVLARVLSDGTEEALPRL 122 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~ky----g~~VPVl~~~~idG~~l~~~~~ 122 (141)
..++.+++-+|||.|...-++|.+..+ ...++++..+..|+|+++.++| +..||+++....||++++.|-.
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae-----~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAE-----ANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHH-----H-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEES
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHH-----hCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 458999999999999999999999864 2237899999999999988877 3469998844457888865443
Q ss_pred C
Q 032418 123 S 123 (141)
Q Consensus 123 ~ 123 (141)
.
T Consensus 117 r 117 (129)
T PF14595_consen 117 R 117 (129)
T ss_dssp S
T ss_pred C
Confidence 3
No 120
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.88 E-value=4.8e-05 Score=44.50 Aligned_cols=54 Identities=30% Similarity=0.533 Sum_probs=42.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHH---HcCC-cCceEE
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK---SYQY-EIPVLA 108 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~---kyg~-~VPVl~ 108 (141)
+++|..++|++|.+.++.+.+.. ....++.+..+|++++.+..+ .++. .+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELA-----LLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHH-----hhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEE
Confidence 46899999999999999999641 123479999999998876544 5554 699987
No 121
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.83 E-value=0.00017 Score=55.90 Aligned_cols=86 Identities=9% Similarity=0.046 Sum_probs=58.4
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHH----H-------------------HHcCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW----E-------------------KSYQY 102 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el----~-------------------~kyg~ 102 (141)
..+.|..|..+||+.|.+..+.|.+.. +.++++.-++++++++. . ..||.
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~-------~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLS-------AQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHH-------HcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 445677899999999999999998873 23688888888765431 1 13444
Q ss_pred -cCceEEEeccCCeEeeCCCCCcccCHHHHHHHHHHHhh
Q 032418 103 -EIPVLARVLSDGTEEALPRLSPRIGVELIQKKIAAALR 140 (141)
Q Consensus 103 -~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l~~~~~ 140 (141)
.+|..+..+.||+.. ....+.+.++.+.+.|..+++
T Consensus 141 ~~~P~t~vid~~G~i~--~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 141 YGAPETFLIDGNGIIR--YRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CcCCeEEEECCCceEE--EEEecCCCHHHHHHHHHHHHH
Confidence 489766555678754 233355667777777776664
No 122
>PLN02309 5'-adenylylsulfate reductase
Probab=97.83 E-value=8.3e-05 Score=66.49 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=62.6
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC-CCHHHHH-HcCC-cCceEEEeccCCeE--eeC
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-TNPEWEK-SYQY-EIPVLARVLSDGTE--EAL 119 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId-~d~el~~-kyg~-~VPVl~~~~idG~~--l~~ 119 (141)
.....++.|..|||+.|+.+++.++++.. .....++.|-.+|++ ++.++.. +|+. .+|+++ .|.+|.. +.|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~---~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil-~f~~g~~~~v~Y 439 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAE---KLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTIL-LFPKNSSRPIKY 439 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHH---HhccCCeEEEEEECCCcchHHHHhhCCCceeeEEE-EEeCCCCCeeec
Confidence 34567899999999999999999988743 112236899999999 6777775 5887 599988 4566652 222
Q ss_pred CCCCcccCHHHHHHHHHHH
Q 032418 120 PRLSPRIGVELIQKKIAAA 138 (141)
Q Consensus 120 ~~~~~rl~~~~L~~~l~~~ 138 (141)
..++.+.+.|.+.+..+
T Consensus 440 --~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 440 --PSEKRDVDSLLSFVNSL 456 (457)
T ss_pred --CCCCcCHHHHHHHHHHh
Confidence 22455667777777653
No 123
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.83 E-value=2.5e-05 Score=56.80 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=48.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH-------HHHHHcCCcCceEEEeccCCeEeeCCCC
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-------EWEKSYQYEIPVLARVLSDGTEEALPRL 122 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~-------el~~kyg~~VPVl~~~~idG~~l~~~~~ 122 (141)
|++|+.|+|.-|.+|+++|++. +++|+++|+.+++ ++.+..|.++--++. ..|...-.-.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~----------~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin--~~~~~y~~l~~ 68 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA----------GIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLR--TKEAPYKELGL 68 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC----------CCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHh--cCCchHHHcCC
Confidence 5899999999999999999986 8999999998764 244555544434431 34432211111
Q ss_pred C-cccCHHHHHHHHH
Q 032418 123 S-PRIGVELIQKKIA 136 (141)
Q Consensus 123 ~-~rl~~~~L~~~l~ 136 (141)
+ ..++++++.+.|.
T Consensus 69 ~~~~ls~~e~i~ll~ 83 (112)
T cd03034 69 ADPELSDEELIDAMA 83 (112)
T ss_pred CccCCCHHHHHHHHH
Confidence 1 3466666555554
No 124
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=5e-05 Score=53.71 Aligned_cols=56 Identities=30% Similarity=0.411 Sum_probs=44.3
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHH--------------H--HHHcCC-cCceEEEeccC
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE--------------W--EKSYQY-EIPVLARVLSD 113 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~e--------------l--~~kyg~-~VPVl~~~~id 113 (141)
++|+...||.|..++++|++. +++|+.|||++... . .+..|+ +||.+.. .|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl----------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~--~d 72 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL----------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT--DD 72 (85)
T ss_pred eeeccccCcchHHHHHHHHHc----------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe--CC
Confidence 899999999999999999997 79999999996421 1 123354 7999984 67
Q ss_pred CeEee
Q 032418 114 GTEEA 118 (141)
Q Consensus 114 G~~l~ 118 (141)
|+++.
T Consensus 73 ~~vVl 77 (85)
T COG4545 73 GKVVL 77 (85)
T ss_pred CcEEE
Confidence 87663
No 125
>PTZ00102 disulphide isomerase; Provisional
Probab=97.82 E-value=8.2e-05 Score=64.00 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=64.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
...+..|..|||+.|+..++.+++.... ......+.+..+|.++++...++++. .+|.++. +.+|+... .+..+.
T Consensus 376 k~vlv~f~a~wC~~C~~~~p~~~~~a~~--~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~-~~~~~~~~-~~~~G~ 451 (477)
T PTZ00102 376 KDVLLEIYAPWCGHCKNLEPVYNELGEK--YKDNDSIIVAKMNGTANETPLEEFSWSAFPTILF-VKAGERTP-IPYEGE 451 (477)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHH--hccCCcEEEEEEECCCCccchhcCCCcccCeEEE-EECCCcce-eEecCc
Confidence 4568899999999999999999886421 11123578899999999888888887 5999873 45565431 134456
Q ss_pred cCHHHHHHHHHHHh
Q 032418 126 IGVELIQKKIAAAL 139 (141)
Q Consensus 126 l~~~~L~~~l~~~~ 139 (141)
.+.+.+.+.|.+..
T Consensus 452 ~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 452 RTVEGFKEFVNKHA 465 (477)
T ss_pred CCHHHHHHHHHHcC
Confidence 67888888887654
No 126
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.81 E-value=3e-05 Score=56.60 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=48.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH----H---HHHHcCCcCce---EEEeccCCeEeeC
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----E---WEKSYQYEIPV---LARVLSDGTEEAL 119 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~----e---l~~kyg~~VPV---l~~~~idG~~l~~ 119 (141)
|++|+.|+|.-|.+|+++|++. +++|+++|+.++| + +.+..| +++ ++. ..|+..-.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~----------~i~~~~~di~~~p~t~~el~~~l~~~g--~~~~~~lin--~~~~~~~~ 66 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDK----------GIEPEVVKYLKNPPTKSELEAIFAKLG--LTVAREMIR--TKEALYKE 66 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHC----------CCCeEEEeccCCCcCHHHHHHHHHHcC--CchHHHHHh--cCCcHHHH
Confidence 5899999999999999999986 8999999999765 2 334444 333 431 34543222
Q ss_pred CCCC-cccCHHHHHHHHHH
Q 032418 120 PRLS-PRIGVELIQKKIAA 137 (141)
Q Consensus 120 ~~~~-~rl~~~~L~~~l~~ 137 (141)
..++ +.++++++.+.|.+
T Consensus 67 l~~~~~~ls~~e~i~~l~~ 85 (114)
T TIGR00014 67 LGLSDPNLSDQELLDAMVA 85 (114)
T ss_pred cCCCccCCCHHHHHHHHHH
Confidence 2222 34666666655543
No 127
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.80 E-value=3.6e-05 Score=57.18 Aligned_cols=37 Identities=19% Similarity=0.474 Sum_probs=34.1
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
+.|++|+.|.|.-|++|+++|++. +++|+++|+.+++
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~----------gi~~~~~~y~~~~ 37 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEH----------GIEYTFIDYLKTP 37 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHc----------CCCcEEEEeecCC
Confidence 469999999999999999999996 8999999999764
No 128
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.78 E-value=0.00029 Score=53.65 Aligned_cols=87 Identities=9% Similarity=0.021 Sum_probs=66.5
Q ss_pred eEEEEeCCC--CCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 49 KLVLYSKPG--CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 49 ~VtLYtkp~--C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
.+.++.... +|-+.++--+|+++.. + .....+.+-++|+|+++++..+||. .||.++ .|.||+.+ +++.+.
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~--e-~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl-~FkdGk~v--~~i~G~ 110 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLR--E-FPDYTWQVAIADLEQSEAIGDRFGVFRFPATL-VFTGGNYR--GVLNGI 110 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHH--H-hcCCceEEEEEECCCCHHHHHHcCCccCCEEE-EEECCEEE--EEEeCc
Confidence 454554433 7778888888887742 1 1112388999999999999999997 599988 57999977 667777
Q ss_pred cCHHHHHHHHHHHhhC
Q 032418 126 IGVELIQKKIAAALRQ 141 (141)
Q Consensus 126 l~~~~L~~~l~~~~~~ 141 (141)
...+++.+.|.+++.+
T Consensus 111 ~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 111 HPWAELINLMRGLVEP 126 (132)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 8889999999988864
No 129
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.78 E-value=0.00018 Score=57.16 Aligned_cols=82 Identities=20% Similarity=0.163 Sum_probs=60.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeC--CCCC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEAL--PRLS 123 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~--~~~~ 123 (141)
...|+-|+.+||+.|..+.+.|++++. ....+.|..+|+++. .++|+. .+|+++ ++.||+.+.. |...
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~-----k~~~vkFvkI~ad~~---~~~~~i~~lPTll-iyk~G~~v~~ivG~~~ 173 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELAR-----KFPDTKFVKIISTQC---IPNYPDKNLPTIL-VYRNGDIVKQFIGLLE 173 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHH-----HCCCCEEEEEEhHHh---HhhCCCCCCCEEE-EEECCEEEEEEeCchh
Confidence 356778999999999999999999853 234689999999643 578887 599988 5699986531 2211
Q ss_pred ---cccCHHHHHHHHHH
Q 032418 124 ---PRIGVELIQKKIAA 137 (141)
Q Consensus 124 ---~rl~~~~L~~~l~~ 137 (141)
.+++.+.|...|..
T Consensus 174 ~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 174 FGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred hCCCCCCHHHHHHHHHh
Confidence 26778888777653
No 130
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.75 E-value=0.00015 Score=64.91 Aligned_cols=86 Identities=13% Similarity=0.172 Sum_probs=59.9
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH-HHH-HHcCC-cCceEEEeccCCeE--eeCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-EWE-KSYQY-EIPVLARVLSDGTE--EALP 120 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~-el~-~kyg~-~VPVl~~~~idG~~--l~~~ 120 (141)
..+.+..|..|||+.|+..++.+++... + ....++.+..+|++.++ ++. ++|+. .+|+++ .|.+|.. ..|
T Consensus 371 ~k~VLV~FyApWC~~Ck~m~P~~eelA~--~-~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii-~Fk~g~~~~~~Y- 445 (463)
T TIGR00424 371 KEAWLVVLYAPWCPFCQAMEASYLELAE--K-LAGSGVKVAKFRADGDQKEFAKQELQLGSFPTIL-FFPKHSSRPIKY- 445 (463)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHH--H-hccCCcEEEEEECCCCccHHHHHHcCCCccceEE-EEECCCCCceeC-
Confidence 3457889999999999999999988753 1 11124889999999764 444 68887 599987 4677753 222
Q ss_pred CCCcccCHHHHHHHHHH
Q 032418 121 RLSPRIGVELIQKKIAA 137 (141)
Q Consensus 121 ~~~~rl~~~~L~~~l~~ 137 (141)
..+..+.+.|...++.
T Consensus 446 -~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 446 -PSEKRDVDSLMSFVNL 461 (463)
T ss_pred -CCCCCCHHHHHHHHHh
Confidence 1245566667666654
No 131
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.75 E-value=0.00025 Score=54.27 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=58.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-----------------------CHHHHHHcCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----------------------NPEWEKSYQY 102 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-----------------------d~el~~kyg~ 102 (141)
....+..|..+||+.|.+..+.+++... .++.+-.+|+++ +.++.+.|+.
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~-------~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAK-------DGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHH-------cCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 4456888999999999999999887632 245555555543 2234445664
Q ss_pred -cCceEEEeccCCeEeeCCCCCcccCHHHHHHHHHHHhh
Q 032418 103 -EIPVLARVLSDGTEEALPRLSPRIGVELIQKKIAAALR 140 (141)
Q Consensus 103 -~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l~~~~~ 140 (141)
.+|..+..+.||+... +..+....+++.+.|.++++
T Consensus 136 ~~~P~~~~id~~G~i~~--~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 136 YGAPETFLVDGNGVILY--RHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eeCCeEEEEcCCceEEE--EEeccCCHHHHHHHHHHHhh
Confidence 5897654456788653 33355778888888888875
No 132
>PTZ00062 glutaredoxin; Provisional
Probab=97.73 E-value=0.00021 Score=57.70 Aligned_cols=74 Identities=9% Similarity=0.043 Sum_probs=53.4
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
...|..|+.+||+.|....++|.++.. ...++.|..||.+ |+. .||.++ .+.||+++ +++.+.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~-----~~~~~~F~~V~~d--------~~V~~vPtfv-~~~~g~~i--~r~~G~ 81 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVE-----DFPSLEFYVVNLA--------DANNEYGVFE-FYQNSQLI--NSLEGC 81 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHH-----HCCCcEEEEEccc--------cCcccceEEE-EEECCEEE--eeeeCC
Confidence 456778889999999999999999852 3346888888875 887 599876 46899987 344432
Q ss_pred cCHHHHHHHHHH
Q 032418 126 IGVELIQKKIAA 137 (141)
Q Consensus 126 l~~~~L~~~l~~ 137 (141)
+..+|.+++..
T Consensus 82 -~~~~~~~~~~~ 92 (204)
T PTZ00062 82 -NTSTLVSFIRG 92 (204)
T ss_pred -CHHHHHHHHHH
Confidence 24455555443
No 133
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.66 E-value=6.3e-05 Score=53.70 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHH----HcC-----CcCceEEEeccCCeEeeC
Q 032418 60 LCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK----SYQ-----YEIPVLARVLSDGTEEAL 119 (141)
Q Consensus 60 lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~----kyg-----~~VPVl~~~~idG~~l~~ 119 (141)
-|..++.+|+.+ +|+|+++||+.|++..+ +.+ .++|.|| ++|+.++.
T Consensus 18 ~~~~v~~lL~~k----------~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIF---i~~~~iGg 73 (92)
T cd03030 18 RQQEVLGFLEAK----------KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIF---NGDEYCGD 73 (92)
T ss_pred HHHHHHHHHHHC----------CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEE---ECCEEeeC
Confidence 589999999987 89999999998886444 333 3689998 78876643
No 134
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.58 E-value=0.0005 Score=49.61 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=48.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCC-CCCceeEEEECC--CCHHHHHHcCCc-CceEEEeccCCe
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDS-LHDVDLQVRDIT--TNPEWEKSYQYE-IPVLARVLSDGT 115 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~-~~~i~~eevDId--~d~el~~kyg~~-VPVl~~~~idG~ 115 (141)
...+..|..+||+.|...++.+++... .... ...+.+-.+|.+ +++++.++|+.+ +|+++. +.+|+
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~--~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l-f~~~~ 89 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLAR--DLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY-FPPFS 89 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHH--HHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE-ECCCC
Confidence 578889999999999999999887632 0011 124788888865 466788999974 999874 45555
No 135
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.55 E-value=0.00058 Score=57.03 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=65.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC-----------HHHHHHcCCc-CceEEEeccC-
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----------PEWEKSYQYE-IPVLARVLSD- 113 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d-----------~el~~kyg~~-VPVl~~~~id- 113 (141)
.-.+.+|.+..|++|+..-.+|+... ...||++..|++|.. ...++++|.. +|.++.+..+
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa------~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t 224 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFA------KEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS 224 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHH------HHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence 35688999999999999999999884 456899999999964 4577888874 9999976555
Q ss_pred Ce--EeeCCCCCcccCHHHHHHHHHHHhh
Q 032418 114 GT--EEALPRLSPRIGVELIQKKIAAALR 140 (141)
Q Consensus 114 G~--~l~~~~~~~rl~~~~L~~~l~~~~~ 140 (141)
++ .+++|.++ +++|.++|-....
T Consensus 225 ~~~~pv~~G~iS----~deL~~Ri~~v~~ 249 (256)
T TIGR02739 225 QKMSPLAYGFIS----QDELKERILNVLT 249 (256)
T ss_pred CcEEEEeeccCC----HHHHHHHHHHHHh
Confidence 33 25566655 8999888876653
No 136
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.54 E-value=0.00054 Score=44.90 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=40.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC------HHHHHHcCC-cCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN------PEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d------~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
++||+.+.|++|.+++-.|+.. +++|+.++++.. +++.+.... .+|++. .+|..+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~---~~g~~l 63 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEK----------GVDYELVPVDLTKGEHKSPEHLARNPFGQIPALE---DGDLKL 63 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHc----------CCCcEEEEeCccccccCCHHHHhhCCCCCCCEEE---ECCEEE
Confidence 6899999999999999999986 677877776632 234433333 599997 567655
No 137
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.53 E-value=0.00064 Score=50.68 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=45.6
Q ss_pred ceEEEEeCCCCCchHHHHHH-HHHHhhcCCCCCCCCceeEEEECCCCHHHHHH--------cCC-cCceEEEeccCCeEe
Q 032418 48 RKLVLYSKPGCCLCDGLKEK-LQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS--------YQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~-L~~~~~~~~~~~~~~i~~eevDId~d~el~~k--------yg~-~VPVl~~~~idG~~l 117 (141)
+-+..|+.+||++|+.+++. +.... +.+ .-+..+-+..+|+++++++.++ ||. ..|.++....+|+++
T Consensus 17 pVll~f~a~WC~~Ck~me~~~f~~~~-V~~-~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~ 94 (124)
T cd02955 17 PIFLSIGYSTCHWCHVMEHESFEDEE-VAA-ILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPF 94 (124)
T ss_pred eEEEEEccCCCHhHHHHHHHccCCHH-HHH-HHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEE
Confidence 45667999999999999752 22100 000 0012688889999988876553 354 699987555789987
Q ss_pred e
Q 032418 118 A 118 (141)
Q Consensus 118 ~ 118 (141)
.
T Consensus 95 ~ 95 (124)
T cd02955 95 F 95 (124)
T ss_pred e
Confidence 4
No 138
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.53 E-value=0.00029 Score=50.40 Aligned_cols=67 Identities=13% Similarity=0.041 Sum_probs=45.3
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEEC-----------------------CCCHHHHHHcC
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI-----------------------TTNPEWEKSYQ 101 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDI-----------------------d~d~el~~kyg 101 (141)
.....+..|..+||+.|....+.|.+... ..++.+..+++ |.+.++...|+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~------~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 97 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALAR------QGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG 97 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHH------hcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC
Confidence 34567888999999999999999988742 12354444443 34445666677
Q ss_pred C-cCceEEEeccCCeEe
Q 032418 102 Y-EIPVLARVLSDGTEE 117 (141)
Q Consensus 102 ~-~VPVl~~~~idG~~l 117 (141)
. .+|..+....+|+..
T Consensus 98 v~~~P~~~~ld~~G~v~ 114 (127)
T cd03010 98 VYGVPETFLIDGDGIIR 114 (127)
T ss_pred CCCCCeEEEECCCceEE
Confidence 5 689655445688865
No 139
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.48 E-value=0.00014 Score=54.62 Aligned_cols=36 Identities=36% Similarity=0.710 Sum_probs=33.1
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
.+++|+.|+|.-|++|+++|++. +++|+.+|+.+++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~----------gi~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS----------GHDVEVQDILKEP 37 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC----------CCCcEEEeccCCC
Confidence 57899999999999999999996 8999999998764
No 140
>PRK10853 putative reductase; Provisional
Probab=97.45 E-value=0.00013 Score=54.02 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=32.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
|++|+.|+|.-|.+|+++|++. +++|+.+|+.+++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~----------~i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ----------GIDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc----------CCCcEEeehccCC
Confidence 7999999999999999999986 8999999999764
No 141
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.45 E-value=0.001 Score=55.38 Aligned_cols=83 Identities=7% Similarity=0.030 Sum_probs=63.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-----------CHHHHHHcCC-cCceEEEeccCC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----------NPEWEKSYQY-EIPVLARVLSDG 114 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-----------d~el~~kyg~-~VPVl~~~~idG 114 (141)
.-.+.+|.+..|++|+..-.+|+... ..+|+++.-|++|. |....+++|. .+|.++++..+.
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa------~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFR------DTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKS 217 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHH------HHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCC
Confidence 35688999999999999999999984 45689999999985 2335567886 489998765554
Q ss_pred -e--EeeCCCCCcccCHHHHHHHHHHHh
Q 032418 115 -T--EEALPRLSPRIGVELIQKKIAAAL 139 (141)
Q Consensus 115 -~--~l~~~~~~~rl~~~~L~~~l~~~~ 139 (141)
+ .+++|.++ +++|.++|....
T Consensus 218 ~~~~pv~~G~iS----~deL~~Ri~~v~ 241 (248)
T PRK13703 218 GSVRPLSYGFIT----QDDLAKRFLNVS 241 (248)
T ss_pred CcEEEEeeccCC----HHHHHHHHHHHH
Confidence 3 36677665 888988887654
No 142
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.42 E-value=0.00077 Score=44.24 Aligned_cols=55 Identities=16% Similarity=0.087 Sum_probs=40.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC---CHHHHHHcC--CcCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQ--YEIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~---d~el~~kyg--~~VPVl~~~~idG~~l 117 (141)
++||+.+.||+|.+++-.|+.. +++|+.++++. .+++.+..- ..||++. .+|..+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~----------gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~---~~~~~l 60 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALK----------GVPYEYVEEDLGNKSELLLASNPVHKKIPVLL---HNGKPI 60 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHc----------CCCCEEEEeCcccCCHHHHHhCCCCCCCCEEE---ECCEEe
Confidence 3699999999999999999987 77888877763 234443322 4699997 566544
No 143
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.42 E-value=0.00089 Score=49.91 Aligned_cols=89 Identities=9% Similarity=0.163 Sum_probs=58.8
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC----------------------HHHHHHcCC
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN----------------------PEWEKSYQY 102 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d----------------------~el~~kyg~ 102 (141)
.....+..|..+||+.|....+.|.+... + ....++.+-.++.+++ .++.+.|+.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~--~-~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 136 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYP--K-YKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHH--H-hhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence 34557788999999999998887776532 0 1123577777777643 345567776
Q ss_pred -cCceEEEeccCCeEeeCCCCCcccCHHHHHHHHHHH
Q 032418 103 -EIPVLARVLSDGTEEALPRLSPRIGVELIQKKIAAA 138 (141)
Q Consensus 103 -~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l~~~ 138 (141)
.+|.++.+..||+.+.. ..+....+++.+.++++
T Consensus 137 ~~~P~~~lid~~g~i~~~--~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 137 GPLPTTFLIDKDGKVVKV--ITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCcCeEEEECCCCcEEEE--EeCCCCHHHHHHHHHHh
Confidence 48987654457876632 23456788888887754
No 144
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.42 E-value=0.00083 Score=43.86 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=41.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC---CHHHHHHcCC-cCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---NPEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~---d~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
++||+.+.|++|.+++-.|..+. .+++|+.+.++. .+++.+.... .||++.. .||..+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~--------~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~~g~~l 62 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETG--------LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL--DDGEAL 62 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhC--------CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE--CCCCEE
Confidence 37999999999999999999831 178888888863 2444444333 6999862 366554
No 145
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0005 Score=50.76 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=56.8
Q ss_pred CceEEEEeC-----CCCCchHHHHHHHHHHhhcCCCCCCCC-ceeEEEECCCCHHHHH---HcC-C-cCceEEEeccCCe
Q 032418 47 TRKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEK---SYQ-Y-EIPVLARVLSDGT 115 (141)
Q Consensus 47 ~~~VtLYtk-----p~C~lC~~Ak~~L~~~~~~~~~~~~~~-i~~eevDId~d~el~~---kyg-~-~VPVl~~~~idG~ 115 (141)
...|+||-| |-|++=.++-..|... + ++|..+||-+|+++++ +|. + ++|++. +||+
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~----------g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLy---i~GE 80 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSAC----------GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLY---VNGE 80 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHc----------CCcceeEEeeccCHHHHhccHhhcCCCCCceee---ECCE
Confidence 456778854 7899999999999986 5 8999999999999886 453 2 799998 8998
Q ss_pred EeeCCCCC-cccCHHHHHHHHHH
Q 032418 116 EEALPRLS-PRIGVELIQKKIAA 137 (141)
Q Consensus 116 ~l~~~~~~-~rl~~~~L~~~l~~ 137 (141)
.++.-.+- +-....+|+..|.+
T Consensus 81 fvGG~DIv~Em~q~GELq~~l~~ 103 (105)
T COG0278 81 FVGGCDIVREMYQSGELQTLLKE 103 (105)
T ss_pred EeccHHHHHHHHHcchHHHHHHh
Confidence 66432222 33444456655544
No 146
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.35 E-value=0.001 Score=44.50 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=40.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC------CHHHHHHcCC-cCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~------d~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
++||..++|+.|.+++-.|+++ |++|+.++++- .+++.+.-.. .||++. .||+.+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~----------gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~---~~g~~l 62 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEK----------GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI---HGDNII 62 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHc----------CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE---ECCEEE
Confidence 4799999999999999999887 67777766652 1234443333 699997 578755
No 147
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.34 E-value=0.00098 Score=44.52 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=48.2
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC-----------------------HHHHHHcCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----------------------PEWEKSYQY 102 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d-----------------------~el~~kyg~ 102 (141)
....+..|..+||+.|......+.+... ..+..++.+..++++.+ .++.+.|+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~---~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAK---EYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV 95 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHH---HhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc
Confidence 4567889999999999998888877642 11224789999999986 455566665
Q ss_pred -cCceEEEeccCCeEe
Q 032418 103 -EIPVLARVLSDGTEE 117 (141)
Q Consensus 103 -~VPVl~~~~idG~~l 117 (141)
.+|.++....+|+.+
T Consensus 96 ~~~P~~~l~d~~g~v~ 111 (116)
T cd02966 96 RGLPTTFLIDRDGRIR 111 (116)
T ss_pred CccceEEEECCCCcEE
Confidence 577766433456543
No 148
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.34 E-value=0.00095 Score=47.09 Aligned_cols=79 Identities=11% Similarity=0.048 Sum_probs=51.8
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC-----------------------CCHHHHHHcC
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-----------------------TNPEWEKSYQ 101 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId-----------------------~d~el~~kyg 101 (141)
.....+..|..+||+.|....+.|.+... .+.+..+.++ .+.++.++|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~--------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAA--------DYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWG 90 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHh--------hCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCC
Confidence 34567889999999999999988887632 2333333332 3446777888
Q ss_pred C-cCceEEEeccCCeEeeCCCCCcccCHHHHHHH
Q 032418 102 Y-EIPVLARVLSDGTEEALPRLSPRIGVELIQKK 134 (141)
Q Consensus 102 ~-~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~ 134 (141)
. .+|.++....+| .. ....+..+++.+.++
T Consensus 91 i~~~P~~~vid~~g-i~--~~~~g~~~~~~~~~~ 121 (123)
T cd03011 91 VSVTPAIVIVDPGG-IV--FVTTGVTSEWGLRLR 121 (123)
T ss_pred CCcccEEEEEcCCC-eE--EEEeccCCHHHHHhh
Confidence 6 589987433344 32 344566778877765
No 149
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=97.32 E-value=0.00037 Score=50.05 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=45.7
Q ss_pred EeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH-------HHHHHcCCcCceEEEeccCCeEeeC-C-CCC
Q 032418 53 YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-------EWEKSYQYEIPVLARVLSDGTEEAL-P-RLS 123 (141)
Q Consensus 53 Ytkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~-------el~~kyg~~VPVl~~~~idG~~l~~-~-~~~ 123 (141)
|+.|+|.-|.+|+++|++. +++|+.+|+.++| ++.+..|.++--++. ..|+..-. + ...
T Consensus 1 Y~~~~C~t~rka~~~L~~~----------gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin--~~~~~~k~l~~~~~ 68 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN----------GIEYEFIDYKKEPLSREELRELLSKLGNGPDDLIN--TRSKTYKELGKLKK 68 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT----------T--EEEEETTTS---HHHHHHHHHHHTSSGGGGB---TTSHHHHHTTHHHC
T ss_pred CcCCCCHHHHHHHHHHHHc----------CCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhc--CccchHhhhhhhhh
Confidence 8999999999999999996 8999999999865 355566766655552 45552211 2 111
Q ss_pred cccCHHHHHHHHHH
Q 032418 124 PRIGVELIQKKIAA 137 (141)
Q Consensus 124 ~rl~~~~L~~~l~~ 137 (141)
..++.+++.+.|.+
T Consensus 69 ~~~s~~e~i~~l~~ 82 (110)
T PF03960_consen 69 DDLSDEELIELLLE 82 (110)
T ss_dssp TTSBHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHh
Confidence 44667776666543
No 150
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.31 E-value=0.00084 Score=56.84 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=57.4
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCC-CCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDS-LHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLS 123 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~-~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~ 123 (141)
....+..|..|||+.|....+.+++... .... ..++.+..+|++.+.-.. ++. .+|.++. +.+|+...-....
T Consensus 364 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~--~~~~~~~~i~~~~id~~~n~~~~--~~i~~~Pt~~~-~~~~~~~~~~~~~ 438 (462)
T TIGR01130 364 TKDVLVEFYAPWCGHCKNLAPIYEELAE--KYKDAESDVVIAKMDATANDVPP--FEVEGFPTIKF-VPAGKKSEPVPYD 438 (462)
T ss_pred CCeEEEEEECCCCHhHHHHHHHHHHHHH--HhhcCCCcEEEEEEECCCCccCC--CCccccCEEEE-EeCCCCcCceEec
Confidence 3456889999999999999999988643 1111 116889999998775332 665 5999873 4666542111223
Q ss_pred cccCHHHHHHHHHH
Q 032418 124 PRIGVELIQKKIAA 137 (141)
Q Consensus 124 ~rl~~~~L~~~l~~ 137 (141)
+..+.+.+.+.|.+
T Consensus 439 g~~~~~~l~~~l~~ 452 (462)
T TIGR01130 439 GDRTLEDFSKFIAK 452 (462)
T ss_pred CcCCHHHHHHHHHh
Confidence 34557777777654
No 151
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.23 E-value=0.0036 Score=44.58 Aligned_cols=90 Identities=16% Similarity=0.065 Sum_probs=59.4
Q ss_pred CceEEEEeCCCCCchHHHHH-HHHHHhhcCCCCCCCCceeEEEECCC--CHHHHHHcCC-cCceEEEecc-CCeEeeCCC
Q 032418 47 TRKLVLYSKPGCCLCDGLKE-KLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQY-EIPVLARVLS-DGTEEALPR 121 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~-~L~~~~~~~~~~~~~~i~~eevDId~--d~el~~kyg~-~VPVl~~~~i-dG~~l~~~~ 121 (141)
.+-+..++.+||++|+..++ ++.... +.+-..+ .+-+-.+|+++ ..++...|+. ..|.+..... +|+.+. +
T Consensus 18 K~llv~~~~~~c~~c~~~~~~vl~~~~-v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~--~ 93 (114)
T cd02958 18 KWLLVYLQSEDEFDSQVLNRDLWSNES-VKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLK--V 93 (114)
T ss_pred ceEEEEEecCCcchHHHHHHHHcCCHH-HHHHHHh-CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeE--E
Confidence 34577889999999999865 332211 1000111 35556677764 3467788886 6999875444 788764 5
Q ss_pred CCcccCHHHHHHHHHHHhh
Q 032418 122 LSPRIGVELIQKKIAAALR 140 (141)
Q Consensus 122 ~~~rl~~~~L~~~l~~~~~ 140 (141)
+.+..+.+++.+.|.++..
T Consensus 94 ~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 94 WSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EcCCCCHHHHHHHHHHHHh
Confidence 6677889999998888764
No 152
>PRK10387 glutaredoxin 2; Provisional
Probab=97.21 E-value=0.0023 Score=49.16 Aligned_cols=56 Identities=14% Similarity=0.311 Sum_probs=40.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH-H-HHHHcC-CcCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-E-WEKSYQ-YEIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~-e-l~~kyg-~~VPVl~~~~idG~~l 117 (141)
++||+.+.||+|.+++-.|+.+ |++|+.++++..+ . ..+..+ ..||||+. .||..+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~----------gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~--~~g~~l 59 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLK----------NIPVELIVLANDDEATPIRMIGQKQVPILQK--DDGSYM 59 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHc----------CCCeEEEEcCCCchhhHHHhcCCcccceEEe--cCCeEe
Confidence 4799999999999999999987 8999999886432 2 122223 36999851 466554
No 153
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.19 E-value=0.0025 Score=41.35 Aligned_cols=62 Identities=26% Similarity=0.421 Sum_probs=45.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC-CCHHHHHHcC---CcCceEEEeccCCeE
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-TNPEWEKSYQ---YEIPVLARVLSDGTE 116 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId-~d~el~~kyg---~~VPVl~~~~idG~~ 116 (141)
+.-|.++||+.|....+.+.+... .....+.+..+|+. .+++....|+ ..+|.+. .+.||+.
T Consensus 36 ~v~f~~~~C~~C~~~~~~l~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~ 101 (127)
T COG0526 36 LVDFWAPWCPPCRAEAPLLEELAE----EYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLL-LFKDGKE 101 (127)
T ss_pred EEEEEcCcCHHHHhhchhHHHHHH----HhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEE-EEeCcch
Confidence 333359999999999999988742 11115889999997 7888888887 4689876 3467764
No 154
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.18 E-value=0.0036 Score=48.83 Aligned_cols=71 Identities=21% Similarity=0.319 Sum_probs=45.9
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC--------------------CHHHHHHcCC-c
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--------------------NPEWEKSYQY-E 103 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~--------------------d~el~~kyg~-~ 103 (141)
...+.|..|..+|||.|.+..+.+.+... ..++++.-+..++ +.++.+.|+. .
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~------~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~ 146 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIAR------AEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGK 146 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHH------hcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCc
Confidence 33456788999999999999888877632 2245555555321 2234456665 4
Q ss_pred CceEEEeccCCeEeeCCC
Q 032418 104 IPVLARVLSDGTEEALPR 121 (141)
Q Consensus 104 VPVl~~~~idG~~l~~~~ 121 (141)
+|..+....||+....+-
T Consensus 147 ~P~~~lID~~G~I~~~g~ 164 (189)
T TIGR02661 147 IPYGVLLDQDGKIRAKGL 164 (189)
T ss_pred cceEEEECCCCeEEEccC
Confidence 898765556788765543
No 155
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.17 E-value=0.00087 Score=43.84 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=34.7
Q ss_pred CCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEEEeccCCeEe
Q 032418 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEE 117 (141)
Q Consensus 57 ~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~~~~idG~~l 117 (141)
.|++|.+++.+|+.+ +++|+.++++... ..-...||++. .||+.+
T Consensus 15 ~sp~~~~v~~~L~~~----------~i~~~~~~~~~~~---~~p~g~vP~l~---~~g~~l 59 (72)
T cd03054 15 LSPECLKVETYLRMA----------GIPYEVVFSSNPW---RSPTGKLPFLE---LNGEKI 59 (72)
T ss_pred CCHHHHHHHHHHHhC----------CCceEEEecCCcc---cCCCcccCEEE---ECCEEE
Confidence 899999999999986 8999999997533 11123699998 677755
No 156
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.10 E-value=0.0023 Score=46.03 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=47.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCC-CCceeEEEECCCCH------------------------HHHHHc
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL-HDVDLQVRDITTNP------------------------EWEKSY 100 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~-~~i~~eevDId~d~------------------------el~~ky 100 (141)
....+..|..+||+.|....+.|.+... +..+. .++++..++++.+. .+.+.|
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~--~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYE--KLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHH--HHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 3456788889999999998888875421 00111 25777778887552 345577
Q ss_pred CC-cCceEEEeccCCeEe
Q 032418 101 QY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 101 g~-~VPVl~~~~idG~~l 117 (141)
+. .+|.++....+|+.+
T Consensus 96 ~v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 96 KIEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCCEEEEECCCCCEE
Confidence 86 599988654578755
No 157
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.09 E-value=0.0034 Score=57.21 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=59.7
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEE----------------------------EECCCCHHH
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQV----------------------------RDITTNPEW 96 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~ee----------------------------vDId~d~el 96 (141)
...+.+.-|..+||+.|....+.|.++.. + ....++.+.. +++|.+.++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~--e-~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQ--D-AKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHH--H-hccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 44567889999999999999999987642 0 1112343322 344556677
Q ss_pred HHHcCC-cCceEEEeccCCeEeeCCCCCcccCHHHHHHHHH
Q 032418 97 EKSYQY-EIPVLARVLSDGTEEALPRLSPRIGVELIQKKIA 136 (141)
Q Consensus 97 ~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l~ 136 (141)
.+.|+. .+|.++.++.||+.. +...+....++|++.|.
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV--~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQ--RIVKGSISEAQALALIR 170 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEE--EEEeCCCCHHHHHHHHH
Confidence 788887 599986555789866 44556677888877776
No 158
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.06 E-value=0.011 Score=45.40 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=47.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhh-cCCCC---CCCCceeEEEECCCCHH-------------------------H
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFL-LSGPD---SLHDVDLQVRDITTNPE-------------------------W 96 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~-~~~~~---~~~~i~~eevDId~d~e-------------------------l 96 (141)
....+..|..+|||.|.+..+.|.+... +.+.. ...++++..|+.+++++ +
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l 104 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRREL 104 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHH
Confidence 3456788999999999999999987421 00000 12258888888876532 3
Q ss_pred HHHcCC-cCceEEEeccCCeEee
Q 032418 97 EKSYQY-EIPVLARVLSDGTEEA 118 (141)
Q Consensus 97 ~~kyg~-~VPVl~~~~idG~~l~ 118 (141)
.++|+. .+|.++....+|+.+.
T Consensus 105 ~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 105 EAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHcCCCCCCEEEEECCCCcEEe
Confidence 345555 5899886555677653
No 159
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0026 Score=53.91 Aligned_cols=85 Identities=9% Similarity=0.148 Sum_probs=65.3
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCc-CceEEEeccCCeEeeCCCCCc
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTEEALPRLSP 124 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~-VPVl~~~~idG~~l~~~~~~~ 124 (141)
..-.++=||..||+.|.+.-+....+. ..+.+.-|-+||||+-..-+..+|.. .|+.+ .|.||+.+.. + .
T Consensus 21 ~k~v~Vdfta~wCGPCk~IaP~Fs~la-----nkYp~aVFlkVdVd~c~~taa~~gV~amPTFi-ff~ng~kid~--~-q 91 (288)
T KOG0908|consen 21 GKLVVVDFTASWCGPCKRIAPIFSDLA-----NKYPGAVFLKVDVDECRGTAATNGVNAMPTFI-FFRNGVKIDQ--I-Q 91 (288)
T ss_pred ceEEEEEEEecccchHHhhhhHHHHhh-----hhCcccEEEEEeHHHhhchhhhcCcccCceEE-EEecCeEeee--e-c
Confidence 345678899999999999999999875 35568889999999988888899985 78855 5799998742 1 1
Q ss_pred ccCHHHHHHHHHHHh
Q 032418 125 RIGVELIQKKIAAAL 139 (141)
Q Consensus 125 rl~~~~L~~~l~~~~ 139 (141)
-.++..|++++++..
T Consensus 92 GAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 92 GADASGLEEKVAKYA 106 (288)
T ss_pred CCCHHHHHHHHHHHh
Confidence 245666777776543
No 160
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.04 E-value=0.0033 Score=40.48 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=39.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC------CHHHHHHcCC-cCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~------d~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
++||+.+.|+.|.+++..|..+ +++|+.++++- .+++.+.... .+|++. .+|+.+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~----------gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~---~~~~~l 62 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLK----------GLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLV---IDGLVL 62 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHc----------CCCCeEEEecCccCCcCChHHHHhCCCCCCCEEE---ECCEEE
Confidence 3799999999999999999986 67777766652 2344443333 699997 566544
No 161
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.00 E-value=0.003 Score=49.24 Aligned_cols=57 Identities=12% Similarity=0.212 Sum_probs=42.6
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC---HHHHHHcC-CcCceEEEeccCCeEee
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN---PEWEKSYQ-YEIPVLARVLSDGTEEA 118 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d---~el~~kyg-~~VPVl~~~~idG~~l~ 118 (141)
.++||+.++|++|.+++-.|+.+ |++|+.+.|+-. +++.+..- -.||+++ .||..+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~----------gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~---~~g~~l~ 70 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEK----------GVSVEIEQVEKDNLPQDLIDLNPYQSVPTLV---DRELTLY 70 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHC----------CCCCEEEeCCcccCCHHHHHhCCCCCCCEEE---ECCEEee
Confidence 37899999999999999999986 788888888732 34444332 3699998 5776553
No 162
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=96.99 E-value=0.0052 Score=43.87 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=38.1
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--CCHHHHHHcCC--cCceEEEeccCCeEe
Q 032418 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQY--EIPVLARVLSDGTEE 117 (141)
Q Consensus 55 kp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~d~el~~kyg~--~VPVl~~~~idG~~l 117 (141)
+..|++|++++-.|..+ +++|+.++|+ ..|++..+..- .||++. .+|..+
T Consensus 19 ~g~cpf~~rvrl~L~eK----------gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~---~~~~~i 72 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK----------GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL---YNGEVK 72 (91)
T ss_pred CCCChhHHHHHHHHHHC----------CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE---ECCEEe
Confidence 36799999999999987 7888888776 44666666543 599987 567655
No 163
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=96.96 E-value=0.0058 Score=40.46 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=37.7
Q ss_pred EEEEeCCC-------CCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcC-CcCceEEEeccCCeEe
Q 032418 50 LVLYSKPG-------CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ-YEIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~-------C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg-~~VPVl~~~~idG~~l 117 (141)
++||..++ |++|.+++.+|+.. +++|+.++++.. +.-. ..||++. .||+.+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~----------gi~~~~~~~~~~----~~~p~g~vPvl~---~~g~~l 60 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMA----------GIPYENKFGGLA----KRSPKGKLPFIE---LNGEKI 60 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHC----------CCCcEEeecCcc----cCCCCCCCCEEE---ECCEEE
Confidence 57888884 69999999999986 788888877531 1222 3699998 577655
No 164
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.95 E-value=0.0046 Score=44.90 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=46.2
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCC-CCceeEEEECCCCH-------------------------HHHHH
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSL-HDVDLQVRDITTNP-------------------------EWEKS 99 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~-~~i~~eevDId~d~-------------------------el~~k 99 (141)
....+..|..+||+.|....+.|.+... ..... .++++..+++++++ .+.+.
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~--~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYE--KLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHH--HHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 3456778999999999999888876421 00111 25777778887643 23445
Q ss_pred cCC-cCceEEEeccCCeEe
Q 032418 100 YQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 100 yg~-~VPVl~~~~idG~~l 117 (141)
|+. .+|.+++...+|+.+
T Consensus 95 ~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred cCCCCCCEEEEECCCCCEE
Confidence 775 589988544567654
No 165
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.92 E-value=0.0076 Score=44.82 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=53.8
Q ss_pred ceEEEEeC--CCCC---chHHHHHHHHHHhhcCCCCCCCCceeEEEECC-----CCHHHHHHcCC---cCceEEEeccCC
Q 032418 48 RKLVLYSK--PGCC---LCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-----TNPEWEKSYQY---EIPVLARVLSDG 114 (141)
Q Consensus 48 ~~VtLYtk--p~C~---lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId-----~d~el~~kyg~---~VPVl~~~~idG 114 (141)
..++-|.. |||+ .|+.+.+...+.. ..+.+-+||++ ++.+|.++|+. ..|+|. .|.+|
T Consensus 20 ~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa--------~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~-lF~~g 90 (116)
T cd03007 20 YSLVKFDTAYPYGEKHEAFTRLAESSASAT--------DDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIY-LFHGG 90 (116)
T ss_pred cEEEEEeCCCCCCCChHHHHHHHHHHHhhc--------CceEEEEEecccccchhhHHHHHHhCCCcCCCCEEE-EEeCC
Confidence 46788999 8888 8888877766542 24889999994 57789999997 599987 46788
Q ss_pred e---EeeCCCCCcccCHHHHHHHHH
Q 032418 115 T---EEALPRLSPRIGVELIQKKIA 136 (141)
Q Consensus 115 ~---~l~~~~~~~rl~~~~L~~~l~ 136 (141)
+ ...|. .+..+.+.|.+.|.
T Consensus 91 ~~~~~~~Y~--G~~r~~~~lv~~v~ 113 (116)
T cd03007 91 DFENPVPYS--GADVTVDALQRFLK 113 (116)
T ss_pred CcCCCccCC--CCcccHHHHHHHHH
Confidence 4 22221 12255565655554
No 166
>PRK15113 glutathione S-transferase; Provisional
Probab=96.91 E-value=0.0048 Score=48.22 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=42.2
Q ss_pred CceEEEEeCC--CCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC--C----HHHHHHcCC-cCceEEEeccCCeEe
Q 032418 47 TRKLVLYSKP--GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N----PEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 47 ~~~VtLYtkp--~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~--d----~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
.+.++||+.+ .|++|.+++-+|+++ |++|+.+.++- . +++.+..=. .||++. .||..+
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~----------gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~---~~~~~l 69 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEK----------GLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQ---HDDFEL 69 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHc----------CCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEE---ECCEEE
Confidence 5668999976 699999999999987 77777777662 2 334432222 599998 677666
Q ss_pred e
Q 032418 118 A 118 (141)
Q Consensus 118 ~ 118 (141)
.
T Consensus 70 ~ 70 (214)
T PRK15113 70 S 70 (214)
T ss_pred e
Confidence 3
No 167
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.91 E-value=0.016 Score=38.53 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=34.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--CC----HHHHHHcC-CcCceEE
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQ-YEIPVLA 108 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~d----~el~~kyg-~~VPVl~ 108 (141)
++||+.+. +.|.+++-.|+.. +++|+.+.++ .. +++.+..- ..||++.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~----------gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEEL----------GLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIV 56 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHc----------CCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEE
Confidence 68999997 9999999999987 5666655554 21 34444332 3699997
No 168
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.005 Score=49.10 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=58.0
Q ss_pred CCCCCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC----------------HHHHHHcCC-cC
Q 032418 42 SSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN----------------PEWEKSYQY-EI 104 (141)
Q Consensus 42 ~~~~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d----------------~el~~kyg~-~V 104 (141)
.++....-+.+|++++|++|++.|+.+.....+-|-.- ..|.+.++||... .||+++|+. ..
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk-~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK-EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh-hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 34444556889999999999999988854321100000 1378888888741 278899987 48
Q ss_pred ceEEEeccCCeEeeCCCCCcccCHHHH
Q 032418 105 PVLARVLSDGTEEALPRLSPRIGVELI 131 (141)
Q Consensus 105 PVl~~~~idG~~l~~~~~~~rl~~~~L 131 (141)
|.++-...+|+.+ +.+-+.+..++.
T Consensus 117 PtfvFfdk~Gk~I--l~lPGY~ppe~F 141 (182)
T COG2143 117 PTFVFFDKTGKTI--LELPGYMPPEQF 141 (182)
T ss_pred ceEEEEcCCCCEE--EecCCCCCHHHH
Confidence 9977434567755 446677777763
No 169
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=96.87 E-value=0.007 Score=39.97 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=38.9
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC-----HHHHHHcC-CcCceEEEecc-CCeEe
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----PEWEKSYQ-YEIPVLARVLS-DGTEE 117 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d-----~el~~kyg-~~VPVl~~~~i-dG~~l 117 (141)
+||+.+.|+.|.+++-.|+.+ +++|+.++|+-. +++.+..- ..||++. . ||..+
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~----------gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~---~~~g~~l 62 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYN----------GLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFE---GADGFCL 62 (75)
T ss_pred eEecCCCCccHHHHHHHHHHc----------CCceEEEecccccccCCHHHHHhCCCCCCCEEE---cCCCCEE
Confidence 589999999999999999986 677777777632 33433332 3699998 4 46554
No 170
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=96.81 E-value=0.0039 Score=40.61 Aligned_cols=55 Identities=22% Similarity=0.052 Sum_probs=39.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHH---HHHcC--CcCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW---EKSYQ--YEIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el---~~kyg--~~VPVl~~~~idG~~l 117 (141)
++||..+.|+.|.+++-.|+.+ |++|+.++++..... ..+.+ ..+|++. .+|..+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~----------gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~---~~~~~l 60 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADA----------GVEYEDVRITYEEWPELDLKPTLPFGQLPVLE---IDGKKL 60 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHC----------CCCcEEEEeCHHHhhhhhhccCCcCCCCCEEE---ECCEEE
Confidence 3789999999999999999987 788988888742211 11222 2599997 566544
No 171
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=96.78 E-value=0.0076 Score=39.61 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=39.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC--C----HHHHHHcCC-cCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--N----PEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~--d----~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
++||+.+.++.|.++.-.|+.+ +++|+.+.++. . +++.+..-. .||++. .+|..+
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~----------g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~---~~~~~l 62 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLN----------KIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIV---DGDFTL 62 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHc----------CCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEE---ECCEEE
Confidence 4699999999999999999987 67777776652 1 233333333 699997 567644
No 172
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=96.77 E-value=0.0032 Score=54.38 Aligned_cols=55 Identities=24% Similarity=0.507 Sum_probs=44.0
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcC---C-cCceEEEeccCCeEe
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ---Y-EIPVLARVLSDGTEE 117 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg---~-~VPVl~~~~idG~~l 117 (141)
-+++||--..||+|-+++.+|+-. +|+|++|.|+ |-+.++.. + .||.+. ++|++.
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyh----------gisY~VVEVn--pV~r~eIk~SsykKVPil~---~~Geqm 147 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYH----------GISYAVVEVN--PVLRQEIKWSSYKKVPILL---IRGEQM 147 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhc----------CCceEEEEec--chhhhhccccccccccEEE---ecccee
Confidence 589999999999999999999975 8999998885 43434332 2 599998 789875
No 173
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.76 E-value=0.0081 Score=47.13 Aligned_cols=55 Identities=15% Similarity=0.296 Sum_probs=40.1
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH--HHHHHc-CCcCceEEEeccCCeEe
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSY-QYEIPVLARVLSDGTEE 117 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~--el~~ky-g~~VPVl~~~~idG~~l 117 (141)
+||+.+.||+|.+++-.|+.+ |++|+.+++..++ ...+.. ...||++.. .||..+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~----------gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~--~~g~~l 58 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLK----------NIPVEKHVLLNDDEETPIRMIGAKQVPILQK--DDGRAM 58 (209)
T ss_pred CeecCCCCChHHHHHHHHHHc----------CCCeEEEECCCCcchhHHHhcCCCCcceEEe--eCCeEe
Confidence 489999999999999999987 8999999886532 222222 246999862 356544
No 174
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.72 E-value=0.0046 Score=41.72 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=38.7
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEE
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLA 108 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~ 108 (141)
.+-+..|+.+||++|+..++.+-....+.+ .-..++-+..+|++++....+..+..+|.++
T Consensus 18 kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~-~~~~~fv~v~vd~~~~~~~~~~~~~~~P~~~ 78 (82)
T PF13899_consen 18 KPVLVDFGADWCPPCKKLEREVFSDPEVQE-ALNKNFVLVKVDVDDEDPNAQFDRQGYPTFF 78 (82)
T ss_dssp SEEEEEEETTTTHHHHHHHHHTTTSHHHHH-HHHHCSEEEEEETTTHHHHHHHHHCSSSEEE
T ss_pred CCEEEEEECCCCHhHHHHHHHHcCCHHHHH-HHHCCEEEEEEEcCCCChhHHhCCccCCEEE
Confidence 455788999999999999988722100000 0013688888999765543333334599987
No 175
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.72 E-value=0.034 Score=41.91 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=60.4
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-------CHH----------------------
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-------NPE---------------------- 95 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-------d~e---------------------- 95 (141)
.....|..|..+|||.|....+.|.++.. .....++.+.-+.++. +++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~---~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~ 100 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAK---EYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQE 100 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHH---HHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchH
Confidence 44567888889999999987777766532 0122367777787763 221
Q ss_pred HHHHcCC-cCceEEEeccCCeEeeCCCCC-------cccCHHHHHHHHHHHhh
Q 032418 96 WEKSYQY-EIPVLARVLSDGTEEALPRLS-------PRIGVELIQKKIAAALR 140 (141)
Q Consensus 96 l~~kyg~-~VPVl~~~~idG~~l~~~~~~-------~rl~~~~L~~~l~~~~~ 140 (141)
+.+.|+. .+|.++++..+|+.+..+..+ ...+...+.++|+.+|.
T Consensus 101 ~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 101 VAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 2234554 479877655688877554333 22456889999998875
No 176
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.70 E-value=0.0038 Score=43.40 Aligned_cols=58 Identities=16% Similarity=0.302 Sum_probs=36.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH----HHHHHcCCc-CceEE
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQYE-IPVLA 108 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~----el~~kyg~~-VPVl~ 108 (141)
..+.+..|..+||+.|....+.+++... ....++.+..+. ++++ ++.++++.. .|++.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~----~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIAR----AEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHH----HhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEe
Confidence 4567888999999999999999987632 112245555442 3322 355556653 56543
No 177
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.61 E-value=0.017 Score=52.00 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=48.7
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEE
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLAR 109 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~ 109 (141)
.+.+|+.+.|.+|.+++++|+++..+|+ .++++++|..+++++.++|+. .+|.+.+
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~-----~i~~~~~~~~~~~~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSE-----KLNSEAVNRGEEPESETLPKITKLPTVAL 425 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCC-----cEEEEEeccccchhhHhhcCCCcCCEEEE
Confidence 5778999999999999999999865433 799999999999999999997 6999773
No 178
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.61 E-value=0.011 Score=40.02 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=32.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
..+..|..+||+.|.+..+.|.+... ......++++..|+++++.
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~--~~~~~~~v~~v~Vs~d~~~ 47 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYK--KYKKKDDVEFVFVSLDEDE 47 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHH--HHTTTTTEEEEEEE-SSSH
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHH--HhCCCCCEEEEEEEeCCCH
Confidence 45778999999999999999987643 1011247999999999764
No 179
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.57 E-value=0.013 Score=57.12 Aligned_cols=90 Identities=14% Similarity=0.050 Sum_probs=58.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEE---CC------------------------CCHHHHH
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRD---IT------------------------TNPEWEK 98 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevD---Id------------------------~d~el~~ 98 (141)
....|.-|..+||+.|....+.|++... + ....++.+.-+. ++ .+.++.+
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~--~-y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEK--K-YKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHH--H-cCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 4556889999999999999999987642 0 111234443332 12 1234556
Q ss_pred HcCC-cCceEEEeccCCeEeeCCCCCcccCHHHHHHHHHHHhh
Q 032418 99 SYQY-EIPVLARVLSDGTEEALPRLSPRIGVELIQKKIAAALR 140 (141)
Q Consensus 99 kyg~-~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l~~~~~ 140 (141)
+|+. .+|.++....+|+.+. +..+....++|.+.|++++.
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~--~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIA--QLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred hcCCCccceEEEECCCCeEEE--EEecccCHHHHHHHHHHHHH
Confidence 6776 5999875446898763 35555667788888877753
No 180
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0024 Score=52.81 Aligned_cols=58 Identities=24% Similarity=0.427 Sum_probs=48.2
Q ss_pred ceEEEEeC-----CCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHH---cC--CcCceEEEeccCCeEe
Q 032418 48 RKLVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS---YQ--YEIPVLARVLSDGTEE 117 (141)
Q Consensus 48 ~~VtLYtk-----p~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~k---yg--~~VPVl~~~~idG~~l 117 (141)
..|.||=| |.|++=+.+...|... +++|+..||-+|+++++. |. -++|+|+ ++|+.+
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~----------nV~~~~fdIL~DeelRqglK~fSdWPTfPQly---I~GEFi 205 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSH----------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLY---VKGEFI 205 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHc----------CCCeeEEeccCCHHHHHHhhhhcCCCCcccee---ECCEec
Confidence 46788855 7799999999999987 788999999999998764 43 3799998 899966
Q ss_pred e
Q 032418 118 A 118 (141)
Q Consensus 118 ~ 118 (141)
+
T Consensus 206 G 206 (227)
T KOG0911|consen 206 G 206 (227)
T ss_pred c
Confidence 4
No 181
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.44 E-value=0.0072 Score=45.88 Aligned_cols=90 Identities=18% Similarity=0.111 Sum_probs=48.1
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-CHHHHHHcCCcCceEEEeccCCeEee--CCCCCc
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-NPEWEKSYQYEIPVLARVLSDGTEEA--LPRLSP 124 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-d~el~~kyg~~VPVl~~~~idG~~l~--~~~~~~ 124 (141)
+-+..|+++||++|+..++..-+...+.....+ .+-...+|++. +..+ ...|..+|.++-...||+++. .|..+.
T Consensus 25 pvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~-~~~g~~vPtivFld~~g~vi~~i~Gy~~~ 102 (130)
T cd02960 25 PLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNL-SPDGQYVPRIMFVDPSLTVRADITGRYSN 102 (130)
T ss_pred eEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCc-CccCcccCeEEEECCCCCCcccccccccC
Confidence 456789999999999999876321111110111 23222344431 1111 134567999874446777653 233332
Q ss_pred c------cCHHHHHHHHHHHh
Q 032418 125 R------IGVELIQKKIAAAL 139 (141)
Q Consensus 125 r------l~~~~L~~~l~~~~ 139 (141)
+ -+.++|.+.+.+++
T Consensus 103 ~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 103 RLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred ccceeCcCcHHHHHHHHHHHH
Confidence 2 34556777776654
No 182
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.38 E-value=0.015 Score=38.38 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=39.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC--HHHHHHcC-C-cCceEEEeccCCeEe
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN--PEWEKSYQ-Y-EIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d--~el~~kyg-~-~VPVl~~~~idG~~l 117 (141)
++||..+.|+.|..++-.|+.. +++|+.+.++-+ .+...+.+ . .||++. .||..+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~----------~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~---~~~~~l 60 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQ----------GISWEEERVTYEEWQESLKPKMLFGQLPCFK---DGDLTL 60 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHc----------CCCCEEEEecHHHhhhhhhccCCCCCCCEEE---ECCEEE
Confidence 5799999999999999999986 788888887632 11122223 2 599997 567655
No 183
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.37 E-value=0.016 Score=38.00 Aligned_cols=53 Identities=21% Similarity=0.382 Sum_probs=34.9
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--C----CHHHHHHcCC-cCceEEEeccC-CeEe
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T----NPEWEKSYQY-EIPVLARVLSD-GTEE 117 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~----d~el~~kyg~-~VPVl~~~~id-G~~l 117 (141)
+||+.++|+ |.+++-.|... +++|+.++++ + .+++.+.... .||++. .+ |..+
T Consensus 2 ~Ly~~~~~~-~~~v~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~---~~~g~~l 62 (77)
T cd03057 2 KLYYSPGAC-SLAPHIALEEL----------GLPFELVRVDLRTKTQKGADYLAINPKGQVPALV---LDDGEVL 62 (77)
T ss_pred EEEeCCCCc-hHHHHHHHHHc----------CCCceEEEEecccCccCCHhHHHhCCCCCCCEEE---ECCCcEE
Confidence 689999874 87888888876 5666665554 2 2455544333 699997 44 6544
No 184
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.31 E-value=0.027 Score=44.62 Aligned_cols=44 Identities=7% Similarity=0.056 Sum_probs=29.2
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId 91 (141)
.....+..|..+||+.|..--+.|.++.. .....++.+.-++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~---~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHS---VFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHH---HHhcCceEEEEecch
Confidence 34566888999999999976666666531 012346777777653
No 185
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=96.26 E-value=0.024 Score=45.88 Aligned_cols=75 Identities=19% Similarity=0.371 Sum_probs=43.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC-------CC----HH-------HHHHcCCc---CceEE
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-------TN----PE-------WEKSYQYE---IPVLA 108 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId-------~d----~e-------l~~kyg~~---VPVl~ 108 (141)
|+|||..||..|.-|-++|.++.. ...=+.+. ..|| +| ++ +.+..+.+ .|.++
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~-----~~~Vi~La-fHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v 75 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAA-----RPDVIALA-FHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV 75 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHH-----HTSSEEEE-EE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhc-----CCCEEEEE-ecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence 789999999999999999999853 11112332 3333 22 32 33444543 69998
Q ss_pred EeccCCeEeeCCCCCcccCHHHHHHHHHHH
Q 032418 109 RVLSDGTEEALPRLSPRIGVELIQKKIAAA 138 (141)
Q Consensus 109 ~~~idG~~l~~~~~~~rl~~~~L~~~l~~~ 138 (141)
+||++...|+. .+.+..+|...
T Consensus 76 ---VnG~~~~~g~~-----~~~~~~ai~~~ 97 (202)
T PF06764_consen 76 ---VNGREHRVGSD-----RAAVEAAIQAA 97 (202)
T ss_dssp ---ETTTEEEETT------HHHHHHHHHHH
T ss_pred ---ECCeeeeeccC-----HHHHHHHHHHh
Confidence 89999877773 34455555444
No 186
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.24 E-value=0.0053 Score=45.95 Aligned_cols=52 Identities=23% Similarity=0.467 Sum_probs=32.6
Q ss_pred eCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHH-------HH--HcCC-cCceEEE
Q 032418 54 SKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW-------EK--SYQY-EIPVLAR 109 (141)
Q Consensus 54 tkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el-------~~--kyg~-~VPVl~~ 109 (141)
+++|||.|..|+..+++... ....+..|.++.|-+.++| +. +++. .||+|+.
T Consensus 34 g~sWCPDC~~aep~v~~~f~----~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFK----KAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHH----H-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred CCcccHHHHHHHHHHHHHHH----hCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 46799999999999988643 1223688888998754443 22 3555 5999984
No 187
>PLN02473 glutathione S-transferase
Probab=96.19 E-value=0.023 Score=43.89 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=41.0
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--C----CHHHHHHcC-CcCceEEEeccCCeEe
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T----NPEWEKSYQ-YEIPVLARVLSDGTEE 117 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~----d~el~~kyg-~~VPVl~~~~idG~~l 117 (141)
.++||+.+.|+.|.+++-.|+++ +++|+.+.++ + .+++.+..- -.||+++ .||..+
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~----------gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~---~~g~~l 64 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEK----------GIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIE---DGDLKL 64 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHc----------CCCceEEEecCcccccCCHHHHhhCCCCCCCeEE---ECCEEE
Confidence 56899999999999999999887 6777766554 2 345554422 3699998 577655
No 188
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.13 E-value=0.028 Score=44.86 Aligned_cols=54 Identities=7% Similarity=-0.027 Sum_probs=42.4
Q ss_pred CccccccCCCCCCCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCcee------EEEECCCC
Q 032418 33 PLAYSSSSSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDL------QVRDITTN 93 (141)
Q Consensus 33 ~~~~~~~~~~~~~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~------eevDId~d 93 (141)
-.+|..=++++-.....+.-|...||+.|+.-.+++++.. ..++++ .-||.+++
T Consensus 46 ~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~-------~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 46 DTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIK-------AAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred cccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHH-------HcCCCcccccceEEEECccc
Confidence 3455555566666777899999999999999999999984 246888 88888864
No 189
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.13 E-value=0.011 Score=48.08 Aligned_cols=27 Identities=15% Similarity=0.485 Sum_probs=23.9
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHH
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAA 71 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~ 71 (141)
....+|++||-|+||||+++.+.+++.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHH
Confidence 345679999999999999999999986
No 190
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.13 E-value=0.011 Score=39.78 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=32.4
Q ss_pred CCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--CCHHHHH--HcC--CcCceEEEeccC-CeEe
Q 032418 56 PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEK--SYQ--YEIPVLARVLSD-GTEE 117 (141)
Q Consensus 56 p~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~d~el~~--kyg--~~VPVl~~~~id-G~~l 117 (141)
++|++|.+++-.|... +++|+.+.++ +.+.... +.+ ..||++. .| |..+
T Consensus 14 ~~Sp~~~kv~~~L~~~----------~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~---~~~~~~l 69 (84)
T cd03038 14 AFSPNVWKTRLALNHK----------GLEYKTVPVEFPDIPPILGELTSGGFYTVPVIV---DGSGEVI 69 (84)
T ss_pred CcCChhHHHHHHHHhC----------CCCCeEEEecCCCcccccccccCCCCceeCeEE---ECCCCEE
Confidence 7899999999999986 6777776665 2222222 222 3699997 45 6554
No 191
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=96.11 E-value=0.035 Score=36.24 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=39.0
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC------CHHHHHHcCC-cCceEEEeccCCeEe
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~------d~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
+||+.++.+.|.+++-.|+.. +++|+.++++. .+++.+.... .||++. .||..+
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~----------~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~---~~~~~l 62 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDEL----------GLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLE---DGDFVL 62 (73)
T ss_pred EEEecCCCcchHHHHHHHHHc----------CCCCEEEEeccccccccCHHHHhhCCCCCCCEEE---ECCEEE
Confidence 699999999999999999986 67777666652 1344443333 699997 566554
No 192
>PLN02412 probable glutathione peroxidase
Probab=96.09 E-value=0.052 Score=41.50 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=50.7
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC-------CCH-H----HHHHcCCcCceE-------
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-------TNP-E----WEKSYQYEIPVL------- 107 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId-------~d~-e----l~~kyg~~VPVl------- 107 (141)
...|..|..+||+.|......|.+... .....++.+.-|+.+ ++. + +.++++.+.|++
T Consensus 30 k~vlv~f~a~~C~~c~~e~~~l~~l~~---~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 30 KVLLIVNVASKCGLTDSNYKELNVLYE---KYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHH---HHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 345666889999999965444544321 012235666666553 121 2 234455555554
Q ss_pred ----------------------------EEeccCCeEeeCCCCCcccCHHHHHHHHHHHhhC
Q 032418 108 ----------------------------ARVLSDGTEEALPRLSPRIGVELIQKKIAAALRQ 141 (141)
Q Consensus 108 ----------------------------~~~~idG~~l~~~~~~~rl~~~~L~~~l~~~~~~ 141 (141)
+.+..||+.. .+..+..+++++.+.|..+|+|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv--~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVV--QRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEE--EEECCCCCHHHHHHHHHHHHhh
Confidence 3222345433 2233556788899999999876
No 193
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.014 Score=44.43 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=36.4
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHH-------HcCC--cCceEE
Q 032418 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEK-------SYQY--EIPVLA 108 (141)
Q Consensus 55 kp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~-------kyg~--~VPVl~ 108 (141)
++|||.|..|.+++.+..++ ...+..|..+++-+.|.|.. ..+. .||++.
T Consensus 42 qSWCPdCV~AEPvi~~alk~----ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLl 100 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKH----APEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLL 100 (128)
T ss_pred CcCCchHHHhhHHHHHHHHh----CCCceEEEEEEecCCCcccCCCCccccCCCceeecceee
Confidence 57999999999999886431 33478899999987765543 2233 378876
No 194
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=95.95 E-value=0.035 Score=37.30 Aligned_cols=56 Identities=25% Similarity=0.267 Sum_probs=39.6
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHH----c--CCcCceEEEeccCCeEe
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS----Y--QYEIPVLARVLSDGTEE 117 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~k----y--g~~VPVl~~~~idG~~l 117 (141)
+.+||..+..+.|..++-+|+.. +++|+.+.++..+++.+. + ...||++. .||..+
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~----------gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~---~~g~~l 62 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAA----------GVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVE---IDGMKL 62 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHc----------CCCcEEEEeccHHHHHhhccccCCCCCCCCEEE---ECCEEE
Confidence 35799999999999999998886 677877777644433221 1 12699997 577654
No 195
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=95.88 E-value=0.044 Score=35.47 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=36.2
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC------CHHHHHHcCC-cCceEEEeccCCeEe
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~------d~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
+||+.+. +.|.+++-.|... +++|+.+.++- .+++.+.... .||++. .||+.+
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~---~~g~~l 61 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEEL----------GLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLV---DGDLVL 61 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHc----------CCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEE---ECCEEE
Confidence 6888886 7789988888876 67777766652 1344443333 699997 677655
No 196
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=95.79 E-value=0.0062 Score=44.29 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHH----HHHcC---------CcC-ceEEEeccCCeEee
Q 032418 60 LCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW----EKSYQ---------YEI-PVLARVLSDGTEEA 118 (141)
Q Consensus 60 lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el----~~kyg---------~~V-PVl~~~~idG~~l~ 118 (141)
-|+++..+|+.. +|+|+++||..|++. .++.| ... |.|| .||+-.+
T Consensus 19 ~q~~v~~iL~a~----------kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF---~~~~Y~G 78 (99)
T PF04908_consen 19 RQQRVLMILEAK----------KIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIF---NGDEYCG 78 (99)
T ss_dssp HHHHHHHHHHHT----------T--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEE---ETTEEEE
T ss_pred HHHHHHHHHHHc----------CCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEE---eCCEEEe
Confidence 477888888886 899999999998753 33342 234 6787 6777553
No 197
>smart00594 UAS UAS domain.
Probab=95.52 E-value=0.058 Score=39.19 Aligned_cols=87 Identities=10% Similarity=0.034 Sum_probs=55.5
Q ss_pred CceEEEEeCCCCCchHHHHHHH-HHHhhcCCCCCCCCceeEEEECCCCH--HHHHHcCC-cCceEEEeccCC-eE--eeC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKL-QAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSYQY-EIPVLARVLSDG-TE--EAL 119 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L-~~~~~~~~~~~~~~i~~eevDId~d~--el~~kyg~-~VPVl~~~~idG-~~--l~~ 119 (141)
...++.+..+||+.|+...+-+ ... .+.+.-. ..+=+-.+|+++.+ ++..+|+. +.|.+.....+| +. --.
T Consensus 28 K~~lv~~~~~~c~~c~~~~r~vl~~~-~V~~~i~-~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~ 105 (122)
T smart00594 28 RLLWLYLHSQDSPDSQVFNRDVLCNE-AVKSLIR-ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWV 105 (122)
T ss_pred CCEEEEEeCCCCchHHHHHHHHccCH-HHHHHHH-cCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEe
Confidence 4568889999999999977643 211 0111011 13555567888543 57888986 699987544454 21 123
Q ss_pred CCCCcccCHHHHHHHH
Q 032418 120 PRLSPRIGVELIQKKI 135 (141)
Q Consensus 120 ~~~~~rl~~~~L~~~l 135 (141)
+++.+..+.+++.+.|
T Consensus 106 ~~~~G~~~~~~l~~~l 121 (122)
T smart00594 106 GVVEGEISPEELMTFL 121 (122)
T ss_pred ccccCCCCHHHHHHhh
Confidence 6677888888887765
No 198
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.52 E-value=0.032 Score=39.95 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEEC
Q 032418 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI 90 (141)
Q Consensus 44 ~~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDI 90 (141)
+.+..+|++|+-++||+|....+.+++... ...++.+..+++
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~-----~~~~~~~~~~~~ 44 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLK-----EDPDVRVVFKEF 44 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHH-----HCCCceEEEEeC
Confidence 445678999999999999999999988532 112466666665
No 199
>PLN02395 glutathione S-transferase
Probab=95.46 E-value=0.074 Score=40.96 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=38.1
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC------CHHHHHHcCC-cCceEEEeccCCeEe
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT------NPEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~------d~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
.++||+.++|+ +.+++-.|+++ +++|+.+.|+- .+++.+..-. .||++. .||..+
T Consensus 2 ~~~ly~~~~~~-~~rv~~~L~e~----------gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~---~~~~~l 63 (215)
T PLN02395 2 VLKVYGPAFAS-PKRALVTLIEK----------GVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIV---DGDYKI 63 (215)
T ss_pred eEEEEcCCcCc-HHHHHHHHHHc----------CCCceEEEeccccCCcCCHHHHhhCCCCCCCEEE---ECCEEE
Confidence 57999988865 78888888876 67777776652 2455543323 699997 566544
No 200
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=95.44 E-value=0.037 Score=40.21 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=33.4
Q ss_pred CCCceEEEEeCC-CCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH
Q 032418 45 SSTRKLVLYSKP-GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP 94 (141)
Q Consensus 45 ~~~~~VtLYtkp-~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~ 94 (141)
...+.|..|... |||.|......|++... .....++.+..+..+.++
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~---~~~~~~v~~v~v~~~~~~ 74 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQE---KYKDKGVDVVGVSSDDDP 74 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHH---HHHTTTCEEEEEEESSSH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhh---hhccCceEEEEecccCCH
Confidence 344556677777 99999999988877632 012347889889888765
No 201
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=95.43 E-value=0.11 Score=42.58 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=35.3
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--CC-HHHHHHcCC-cCceEEEeccCCeEee
Q 032418 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN-PEWEKSYQY-EIPVLARVLSDGTEEA 118 (141)
Q Consensus 55 kp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~d-~el~~kyg~-~VPVl~~~~idG~~l~ 118 (141)
.+.||+|.++.-.|..+ +++|+.++|+ .. +++.+.--. .|||+. .+|..+.
T Consensus 16 ~~~cp~~~rv~i~L~ek----------gi~~e~~~vd~~~~~~~fl~inP~g~vPvL~---~~g~~l~ 70 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLK----------GVVFNVTTVDLKRKPEDLQNLAPGTHPPFLT---YNTEVKT 70 (236)
T ss_pred CCCCHhHHHHHHHHHHc----------CCCcEEEEECCCCCCHHHHHHCcCCCCCEEE---ECCEEee
Confidence 47899999999999986 6666666665 33 344443323 699997 5776653
No 202
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.42 E-value=0.03 Score=46.03 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=28.0
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEEC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI 90 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDI 90 (141)
...|++|+-|.||||+++.+.+.+..+ ..++++..+.+
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~------~g~V~v~~ip~ 155 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVD------SGKVQLRHILV 155 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhh------cCceEEEEEec
Confidence 457999999999999999988876521 12366666653
No 203
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.41 E-value=0.11 Score=42.82 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=28.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId 91 (141)
...|..|..+||+.|..-.+.|.++.. .....++.+.-|+++
T Consensus 100 K~vvl~FwAswCp~c~~e~p~L~~L~~---~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 100 KVLLIVNVASKCGLTSSNYSELSHLYE---KYKTQGFEILAFPCN 141 (236)
T ss_pred CeEEEEEEcCCCcchHHHHHHHHHHHH---HHhcCCcEEEEEecc
Confidence 456788999999999887766665531 012236777777763
No 204
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.39 E-value=0.022 Score=43.14 Aligned_cols=37 Identities=27% Similarity=0.636 Sum_probs=31.0
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~ 92 (141)
..++||+||.|+.|+-+.+.|+++. .+.++-.|||-.
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~le--------deY~ilrVNIlS 39 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELE--------DEYDILRVNILS 39 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhh--------ccccEEEEEeee
Confidence 4689999999999999999998873 267788888873
No 205
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.11 Score=44.45 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=57.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCC-CceeEEEECCCCHHHHHHcCC-cCceEEEeccCC-eEeeCCCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLH-DVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDG-TEEALPRL 122 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~-~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG-~~l~~~~~ 122 (141)
....+..|-.|||+.|++.....++... ... .+.+-.||.++++++.++|+. ..|++.. |..| +.+.+..
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~-----~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~-f~~~~~~~~~~~- 119 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAK-----ALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKV-FRPGKKPIDYSG- 119 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHH-----HhcCceEEEEeCchhhHHHHHhcCCccCcEEEE-EcCCCceeeccC-
Confidence 3567899999999999999999886532 222 477888888899999999998 5899884 4556 3343322
Q ss_pred CcccCHHHHHHHHHH
Q 032418 123 SPRIGVELIQKKIAA 137 (141)
Q Consensus 123 ~~rl~~~~L~~~l~~ 137 (141)
.-..+.+.+.+..
T Consensus 120 --~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 120 --PRNAESLAEFLIK 132 (383)
T ss_pred --cccHHHHHHHHHH
Confidence 2334444444433
No 206
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.32 E-value=0.1 Score=37.36 Aligned_cols=43 Identities=9% Similarity=-0.113 Sum_probs=28.9
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEEC
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI 90 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDI 90 (141)
.....|..|...||+.|....+.|.+... .....++.+.-++.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~---~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQ---KYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHH---HcCcCCeEEEEecc
Confidence 34567888899999999999888877642 11223455555544
No 207
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.085 Score=43.78 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=47.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC--CHHHHHHcC---CcCceEEEeccCCeEee
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQ---YEIPVLARVLSDGTEEA 118 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~--d~el~~kyg---~~VPVl~~~~idG~~l~ 118 (141)
...|.||+--.||+=.+++=.|+.+ +|+||.++++- -++|.-+.+ ..||||. .||+.++
T Consensus 7 ~~~vrL~~~w~sPfa~R~~iaL~~K----------gI~yE~veedl~~Ks~~ll~~np~hkKVPvL~---Hn~k~i~ 70 (231)
T KOG0406|consen 7 DGTVKLLGMWFSPFAQRVRIALKLK----------GIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLE---HNGKPIC 70 (231)
T ss_pred CCeEEEEEeecChHHHHHHHHHHhc----------CCceEEEecCCCCCCHHHHHhccccccCCEEE---ECCceeh
Confidence 3679999999999999999999887 78888888874 356666655 3699998 8999853
No 208
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.91 E-value=0.24 Score=38.68 Aligned_cols=59 Identities=15% Similarity=0.339 Sum_probs=46.0
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-----cCceEEEeccCCeEe
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-----EIPVLARVLSDGTEE 117 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-----~VPVl~~~~idG~~l 117 (141)
...++++|-.|+|+=|+.=-+.|+.. +|++..+..++-..+.+++|. .-=+.+ +||..+
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~----------Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V---I~Gy~v 87 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKAN----------GFEVKVVETDDFLALKRRLGIPYEMQSCHTAV---INGYYV 87 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhC----------CcEEEEeecCcHHHHHHhcCCChhhccccEEE---EcCEEE
Confidence 35678999999999999999998865 899988888777778888773 234444 688754
No 209
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.85 E-value=0.059 Score=41.85 Aligned_cols=25 Identities=24% Similarity=0.703 Sum_probs=22.7
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHH
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQA 70 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~ 70 (141)
....|++|+.|+||+|.++.+.+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 4678999999999999999999985
No 210
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=94.84 E-value=0.33 Score=38.25 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=36.1
Q ss_pred eEEEEeCCCCCchHHHHH----------HHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHc--------CC-cCceEEE
Q 032418 49 KLVLYSKPGCCLCDGLKE----------KLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY--------QY-EIPVLAR 109 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~----------~L~~~~~~~~~~~~~~i~~eevDId~d~el~~ky--------g~-~VPVl~~ 109 (141)
-+.-.+.++||||+.+.+ +|.+ .|-=..+|.++.|++...| |. +-|..+.
T Consensus 40 Ifl~ig~~~C~wChvM~~esf~d~eVa~~lN~-----------~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vf 108 (163)
T PF03190_consen 40 IFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-----------NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVF 108 (163)
T ss_dssp EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-----------H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEE
T ss_pred EEEEEEecCCcchhhhcccCcCCHHHHHHHhC-----------CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEE
Confidence 355678999999998775 2222 2444568998999887776 44 5888553
Q ss_pred eccCCeEeeC
Q 032418 110 VLSDGTEEAL 119 (141)
Q Consensus 110 ~~idG~~l~~ 119 (141)
...||++++.
T Consensus 109 ltPdg~p~~~ 118 (163)
T PF03190_consen 109 LTPDGKPFFG 118 (163)
T ss_dssp E-TTS-EEEE
T ss_pred ECCCCCeeee
Confidence 4478998773
No 211
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=94.67 E-value=0.42 Score=34.72 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=38.2
Q ss_pred EEEeCCC-CCchH------HHHHH----HHHHhhcCCCCCCCCceeEEEECCCCH------HHHHHcCC---cCceEEEe
Q 032418 51 VLYSKPG-CCLCD------GLKEK----LQAAFLLSGPDSLHDVDLQVRDITTNP------EWEKSYQY---EIPVLARV 110 (141)
Q Consensus 51 tLYtkp~-C~lC~------~Ak~~----L~~~~~~~~~~~~~~i~~eevDId~d~------el~~kyg~---~VPVl~~~ 110 (141)
++|+..- |.-|- +..+| |.++ ..+..|.|++|||.+.+ ++.++... --|+|+
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RK------yp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~-- 72 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRK------YPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVV-- 72 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-------TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEE--
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCc------CCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEE--
Confidence 4677766 88883 33444 4555 34557999999999643 35555433 269998
Q ss_pred ccCCeEeeCCCC
Q 032418 111 LSDGTEEALPRL 122 (141)
Q Consensus 111 ~idG~~l~~~~~ 122 (141)
+||+.++-|..
T Consensus 73 -i~~eiV~EGnp 83 (93)
T PF07315_consen 73 -INDEIVAEGNP 83 (93)
T ss_dssp -ETTEEEEESS-
T ss_pred -ECCEEEecCCc
Confidence 89998876663
No 212
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.057 Score=49.19 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=49.6
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhh-cCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeE
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFL-LSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE 116 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~-~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~ 116 (141)
.++-|-.|||+.|....+-..+.+. |.+ ....+.+-+||-+++.++..+|+. +.|+|. .|.||..
T Consensus 45 vlVeFYAPWCghck~LaPey~kAA~~Lke--~~s~i~LakVDat~~~~~~~~y~v~gyPTlk-iFrnG~~ 111 (493)
T KOG0190|consen 45 VLVEFYAPWCGHCKALAPEYEKAATELKE--EGSPVKLAKVDATEESDLASKYEVRGYPTLK-IFRNGRS 111 (493)
T ss_pred EEEEEEchhhhhhhhhCcHHHHHHHHhhc--cCCCceeEEeecchhhhhHhhhcCCCCCeEE-EEecCCc
Confidence 3568999999999988776655321 111 112688999999999999999997 699988 4689984
No 213
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=94.64 E-value=0.14 Score=38.07 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=25.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEEC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI 90 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDI 90 (141)
.+.|..|..+|||.|...-+.|.+... ..+..++.+--++.
T Consensus 23 k~vvv~~~as~C~~c~~~~~~l~~l~~---~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 23 KVSLVVNVASECGFTDQNYRALQELHR---ELGPSHFNVLAFPC 63 (153)
T ss_pred CEEEEEEeCCCCCchhhhHHHHHHHHH---HHhhCCeEEEEEec
Confidence 345788999999999887765555421 01223566666653
No 214
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.64 E-value=0.11 Score=48.11 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=62.4
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC-H---HHHHHcCC-cCceEEEeccCCeEeeCCCC
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-P---EWEKSYQY-EIPVLARVLSDGTEEALPRL 122 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d-~---el~~kyg~-~VPVl~~~~idG~~l~~~~~ 122 (141)
+-..=|+.+||--|++.+++.=... -..+.-.++-+=+.|++.| + ++.++||. .+|.++....+|++... +
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~--~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~--l 551 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDP--QVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEI--L 551 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcH--HHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcC--C
Confidence 4566899999999999998863100 0002234788899999964 3 57788886 79998733347886644 8
Q ss_pred CcccCHHHHHHHHHHH
Q 032418 123 SPRIGVELIQKKIAAA 138 (141)
Q Consensus 123 ~~rl~~~~L~~~l~~~ 138 (141)
.+.++++.+.+.+...
T Consensus 552 ~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 552 TGFLTADAFLEHLERA 567 (569)
T ss_pred cceecHHHHHHHHHHh
Confidence 8889999988888654
No 215
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.63 E-value=0.023 Score=47.54 Aligned_cols=64 Identities=25% Similarity=0.384 Sum_probs=52.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeE
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTE 116 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~ 116 (141)
..+.|..||||-|...+..+...+.++.+ -++.+-+||+..||.|.-+|-. ..|+|.-+ .||+.
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~d---L~v~va~VDvt~npgLsGRF~vtaLptIYHv-kDGeF 106 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLD---LGVKVAKVDVTTNPGLSGRFLVTALPTIYHV-KDGEF 106 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCC---CceeEEEEEEEeccccceeeEEEecceEEEe-ecccc
Confidence 35689999999999999999998654332 4789999999999999888865 58998744 88974
No 216
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=94.58 E-value=0.079 Score=43.89 Aligned_cols=50 Identities=18% Similarity=0.368 Sum_probs=33.8
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--CCHHHHHHcC--CcCceEEEeccCCeEe
Q 032418 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNPEWEKSYQ--YEIPVLARVLSDGTEE 117 (141)
Q Consensus 55 kp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~d~el~~kyg--~~VPVl~~~~idG~~l 117 (141)
--+||+|.++.-.|+++ +++|+.+.|+ +.++...+.. ..||++. .||..+
T Consensus 70 ~g~cp~s~rV~i~L~ek----------gi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~---~d~~~L 123 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEK----------HLPYDMKLVDLTNKPEWFLKISPEGKVPVVK---LDEKWV 123 (265)
T ss_pred CCCCcHHHHHHHHHHHc----------CCCCEEEEeCcCcCCHHHHhhCCCCCCCEEE---ECCEEE
Confidence 44599999999999987 6666665554 4333333443 3699998 566554
No 217
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=94.50 E-value=0.089 Score=40.28 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=39.4
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--C-----CHHHHHHcCC-cCceEEEeccCCeEee
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T-----NPEWEKSYQY-EIPVLARVLSDGTEEA 118 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~-----d~el~~kyg~-~VPVl~~~~idG~~l~ 118 (141)
+||+-+.|+.|.+++-+|... +++|+.+.++ . .+++.+..-. .||++. .||+.+.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~----------gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~---~~g~~l~ 63 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALK----------GIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLD---IDGEVLT 63 (210)
T ss_pred CcccCCCCCchHHHHHHHHHC----------CCCceEEecccccccccCChhhhhcCCCCcCCEEE---ECCEEee
Confidence 378889999999999999986 7777777666 2 1234333223 699998 5786654
No 218
>PLN02378 glutathione S-transferase DHAR1
Probab=94.49 E-value=0.12 Score=40.62 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=32.8
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--CCH-HHHHHcC-CcCceEEEeccCCeEe
Q 032418 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TNP-EWEKSYQ-YEIPVLARVLSDGTEE 117 (141)
Q Consensus 55 kp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~d~-el~~kyg-~~VPVl~~~~idG~~l 117 (141)
...||+|.++.-.|+.+ +++|+.+.|+ ..+ ++.+..- -.||++. .||..+
T Consensus 17 ~~~~p~~~rv~~~L~e~----------gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~---~~~~~l 70 (213)
T PLN02378 17 LGDCPFSQRALLTLEEK----------SLTYKIHLINLSDKPQWFLDISPQGKVPVLK---IDDKWV 70 (213)
T ss_pred CCCCcchHHHHHHHHHc----------CCCCeEEEeCcccCCHHHHHhCCCCCCCEEE---ECCEEe
Confidence 35599999999999887 5555554444 333 3443322 3699997 577654
No 219
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=94.38 E-value=0.098 Score=41.16 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=39.4
Q ss_pred EEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH-------------------------HHHHHcCC-cCc
Q 032418 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-------------------------EWEKSYQY-EIP 105 (141)
Q Consensus 52 LYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~-------------------------el~~kyg~-~VP 105 (141)
.|+.-|||.|+..-+.|++.+......+ ..+++..|+-|.+. ++.++|.. +||
T Consensus 39 yFsA~wC~pCR~FTP~Lk~fYe~l~~~~-~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP 117 (157)
T KOG2501|consen 39 YFSAHWCPPCRDFTPILKDFYEELKDNA-APFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIP 117 (157)
T ss_pred EEEEEECCchhhCCchHHHHHHHHHhcC-CceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCc
Confidence 6788899999987666655432111122 13555555555432 13335555 699
Q ss_pred eEEEeccCCeEe
Q 032418 106 VLARVLSDGTEE 117 (141)
Q Consensus 106 Vl~~~~idG~~l 117 (141)
.+.+...||+++
T Consensus 118 ~l~i~~~dG~~v 129 (157)
T KOG2501|consen 118 ALVILKPDGTVV 129 (157)
T ss_pred eeEEecCCCCEe
Confidence 988777889876
No 220
>PRK10357 putative glutathione S-transferase; Provisional
Probab=94.35 E-value=0.13 Score=39.22 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=40.2
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC--CHHHHHHcC--CcCceEEEeccCCeEee
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT--NPEWEKSYQ--YEIPVLARVLSDGTEEA 118 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~--d~el~~kyg--~~VPVl~~~~idG~~l~ 118 (141)
+||+.+.|+.+.++.-.|+.. +++|+.++++. .+....+++ -+||+++. .||..+.
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~----------gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~--~~g~~l~ 61 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEK----------GITFEFVNELPYNADNGVAQYNPLGKVPALVT--EEGECWF 61 (202)
T ss_pred eeecCCCCchHHHHHHHHHHc----------CCCCeEEecCCCCCchhhhhcCCccCCCeEEe--CCCCeee
Confidence 699999999999999888886 78888877763 332233444 36999972 3566553
No 221
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=94.04 E-value=0.13 Score=33.76 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=31.0
Q ss_pred CCCchHHHHHHHHHHhhcCCCCCCCCceeEEEEC--C----CC-HHHHHHcCC-cCceEEEeccCCeEe
Q 032418 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI--T----TN-PEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 57 ~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDI--d----~d-~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
.||||.++.-.|..+ |++|+..-+ . .. +++.+--.. +||+|.. .+|+.+
T Consensus 1 ~sP~a~Rv~i~l~~~----------gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~--~~g~vi 57 (70)
T PF13409_consen 1 FSPFAHRVRIALEEK----------GLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVD--PDGTVI 57 (70)
T ss_dssp T-HHHHHHHHHHHHH----------TGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEE--TTTEEE
T ss_pred CchHhHHHHHHHHHh----------CCCCEEEEEeeecCccccChhhhccCcCeEEEEEEE--CCCCEe
Confidence 499999999999988 555554433 2 11 334333333 6999983 478855
No 222
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.86 E-value=0.1 Score=33.90 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=28.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId 91 (141)
|++|..+.||+|..+.+.+++... ....++.++.+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~----~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLY----ADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHh----hcCCcEEEEEeccc
Confidence 578999999999999999998621 12235777766654
No 223
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.82 E-value=0.27 Score=36.24 Aligned_cols=69 Identities=25% Similarity=0.335 Sum_probs=46.0
Q ss_pred ceEEEEeCCC-CCchH------HHHHHHHHHhhcCCCCCCCCceeEEEECCCCH------HHHHHcC---CcCceEEEec
Q 032418 48 RKLVLYSKPG-CCLCD------GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP------EWEKSYQ---YEIPVLARVL 111 (141)
Q Consensus 48 ~~VtLYtkp~-C~lC~------~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~------el~~kyg---~~VPVl~~~~ 111 (141)
.++++|+... |.-|. +.-+||+...+ --..+..|.|+.|||..++ +++++.- +.-|+|+
T Consensus 5 ~~l~VyGae~iCASCV~aPtsKdt~eWLeaalk--RKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPliv--- 79 (106)
T COG4837 5 AKLVVYGAEVICASCVNAPTSKDTYEWLEAALK--RKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIV--- 79 (106)
T ss_pred eEEEEecchhhhHHhcCCCcchhHHHHHHHHHh--ccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEE---
Confidence 4688999887 88884 44556654321 1134568999999996432 4555543 3479998
Q ss_pred cCCeEeeCCC
Q 032418 112 SDGTEEALPR 121 (141)
Q Consensus 112 idG~~l~~~~ 121 (141)
++|+.+.-|.
T Consensus 80 vedeiVaeGn 89 (106)
T COG4837 80 VEDEIVAEGN 89 (106)
T ss_pred EcceEeecCC
Confidence 7999886665
No 224
>PTZ00256 glutathione peroxidase; Provisional
Probab=93.58 E-value=0.61 Score=36.04 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=24.0
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId 91 (141)
.++...|||.|..--+.|.+... . ....++.+--++++
T Consensus 46 v~n~atwCp~C~~e~p~l~~l~~--~-~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVELYK--Q-YKSQGLEILAFPCN 83 (183)
T ss_pred EEEECCCCCchHHHHHHHHHHHH--H-HhhCCcEEEEEecc
Confidence 46789999999987666665421 0 12235666666653
No 225
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.2 Score=38.67 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=34.7
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC-----HHHHHHcCC-cCceEE
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----PEWEKSYQY-EIPVLA 108 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d-----~el~~kyg~-~VPVl~ 108 (141)
+||+.+.+|+|.++.-.+.++ +++|+.+.|+-. +++.+..-. +||+|.
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~----------g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~ 55 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEK----------GLPYEIVLVDLDAEQKPPDFLALNPLGKVPALV 55 (211)
T ss_pred eeecCCCCcchHHHHHHHHHc----------CCCceEEEeCcccccCCHHHHhcCCCCCCCEEe
Confidence 689999999999999998886 566666555533 334443323 699998
No 226
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.24 E-value=0.25 Score=36.57 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=32.2
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId 91 (141)
.+..+|+.|+-+.||+|..+.+.+.+... . ...++.|+.+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~--~--~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVK--K--LPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHH--h--CCCCceEEEcCCc
Confidence 56788999999999999999999987632 1 1235677666654
No 227
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=93.24 E-value=0.38 Score=31.66 Aligned_cols=51 Identities=16% Similarity=0.018 Sum_probs=35.0
Q ss_pred eCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC-----HHHHHHcC-CcCceEEEeccCCeEe
Q 032418 54 SKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-----PEWEKSYQ-YEIPVLARVLSDGTEE 117 (141)
Q Consensus 54 tkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d-----~el~~kyg-~~VPVl~~~~idG~~l 117 (141)
.+..|++|.+++-.|+.+ +++|+.++++-. +++.+..- ..||++. .||..+
T Consensus 6 ~~~~s~~s~~v~~~L~~~----------gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~---~~g~~l 62 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAA----------GIPFEEILVPLYTPDTRARILEFSPTGKVPVLV---DGGIVV 62 (73)
T ss_pred CCCCCHHHHHHHHHHHHc----------CCCCEEEEeCCCCccccHHHHhhCCCCcCCEEE---ECCEEE
Confidence 356789999999998886 777887777632 33333322 3699997 577655
No 228
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.41 Score=41.08 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=56.1
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcc
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~r 125 (141)
...++.|..|||++|+.....+++....- .....+.+-.+|.+.++.+..+++. .-|.+. .|.+|.. ..-...+.
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~--~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~-~f~~~~~-~~~~~~~~ 238 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLL--KSKENVELGKIDATVHKSLASRLEVRGYPTLK-LFPPGEE-DIYYYSGL 238 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHh--ccCcceEEEeeccchHHHHhhhhcccCCceEE-EecCCCc-cccccccc
Confidence 55788999999999999988888764311 1123566666666666778888887 478876 4577766 22222344
Q ss_pred cCHHHHHHHHHH
Q 032418 126 IGVELIQKKIAA 137 (141)
Q Consensus 126 l~~~~L~~~l~~ 137 (141)
.+.+-+.+.+.+
T Consensus 239 R~~~~i~~~v~~ 250 (383)
T KOG0191|consen 239 RDSDSIVSFVEK 250 (383)
T ss_pred ccHHHHHHHHHh
Confidence 444445544443
No 229
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=93.09 E-value=0.97 Score=29.96 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=37.5
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEE--ECCCC----HHHHHHcCC--cCceEEEeccC-CeEee
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVR--DITTN----PEWEKSYQY--EIPVLARVLSD-GTEEA 118 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eev--DId~d----~el~~kyg~--~VPVl~~~~id-G~~l~ 118 (141)
+++++|.-++ .|..++-.|+.. +++|+.+ |.+.. +++.+..-. .||++. .+ |..+.
T Consensus 1 ~~l~l~~~~~--~~~~~r~~l~~~----------gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~---~~~~~~l~ 65 (76)
T PF02798_consen 1 MTLTLYNGRG--RSERIRLLLAEK----------GVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALE---DGDGFVLT 65 (76)
T ss_dssp EEEEEESSST--TTHHHHHHHHHT----------T--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEE---ETTTEEEE
T ss_pred CEEEEECCCC--chHHHHHHHHHh----------cccCceEEEecccccccchhhhhcccccceeeEEE---ECCCCEEE
Confidence 4688999999 788888888865 5555555 55433 556665544 699998 45 76663
No 230
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.06 E-value=0.16 Score=37.03 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=33.7
Q ss_pred CCCCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC
Q 032418 43 SSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (141)
Q Consensus 43 ~~~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~ 92 (141)
++.+...|++|..+.||+|.+..+.+.+... ..-+...+.|..+++-.
T Consensus 9 ~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~--~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 9 NPDAPITVTEFFDFQCPHCAKFHEELEKLLK--KYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp -TTTSEEEEEEE-TTSHHHHHHHHHHHHHHH--HHTTTTTEEEEEEESSS
T ss_pred CCCCCeEEEEEECCCCHhHHHHHHHHhhhhh--hccCCCceEEEEEEccc
Confidence 4555778999999999999999888765422 11123478999998853
No 231
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=92.63 E-value=2.4 Score=31.29 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=60.5
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC---cCceEEEeccCCeEeeCCCCCcc
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY---EIPVLARVLSDGTEEALPRLSPR 125 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~---~VPVl~~~~idG~~l~~~~~~~r 125 (141)
.+.+|........+..++.+.+.+. .....+.|..+|.+..+++...+|. .+|++++...++....+.. ...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~----~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~-~~~ 172 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAK----KFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLP-EGE 172 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHH----CTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE---SSC
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHH----hcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCC-CCC
Confidence 5777877778888888888877753 2334689999999988999998885 5999885432344444434 567
Q ss_pred cCHHHHHHHHHH
Q 032418 126 IGVELIQKKIAA 137 (141)
Q Consensus 126 l~~~~L~~~l~~ 137 (141)
++.+.+.+.+++
T Consensus 173 ~~~~~i~~Fl~d 184 (184)
T PF13848_consen 173 ITPESIEKFLND 184 (184)
T ss_dssp GCHHHHHHHHHH
T ss_pred CCHHHHHHHhcC
Confidence 888888887764
No 232
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=92.40 E-value=0.27 Score=35.55 Aligned_cols=56 Identities=9% Similarity=0.149 Sum_probs=30.7
Q ss_pred eEEEE-eCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH---HHHHHcCCcCceE
Q 032418 49 KLVLY-SKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQYEIPVL 107 (141)
Q Consensus 49 ~VtLY-tkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~---el~~kyg~~VPVl 107 (141)
.|.+| ...||+.|....+.|.+... .....++.+.-|+.+..+ ++.++++...|++
T Consensus 31 ~vl~f~~~~~c~~C~~~~~~l~~~~~---~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~ 90 (149)
T cd03018 31 VVLVFFPLAFTPVCTKELCALRDSLE---LFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLL 90 (149)
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHH---HHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEe
Confidence 34444 48999999987777766421 011235666666655322 2344444445543
No 233
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=92.05 E-value=0.43 Score=32.99 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=40.7
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEE
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLA 108 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~ 108 (141)
.+.||-...=|-=.++.+-|.+..+ +.. ...++++.+||.++|++++.++. -+|.++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e--~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILE--ELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHH--Hhc-CCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 3556666666666666666655532 112 34789999999999999999987 489986
No 234
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=92.04 E-value=0.84 Score=35.40 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=33.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--CC----HHHHHHcCC-cCceEE
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQY-EIPVLA 108 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~d----~el~~kyg~-~VPVl~ 108 (141)
++||..+ ++.|.++.-+|+++ +++|+.++|+ .+ +++.+..-. .||++.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~----------gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~ 56 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEA----------ELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIV 56 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHc----------CCCcEEEEecCcccccCCHHHHhhCcCCCCCEEE
Confidence 5789888 59999999888887 6777766665 22 344443223 699997
No 235
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.41 Score=40.90 Aligned_cols=63 Identities=16% Similarity=0.306 Sum_probs=48.3
Q ss_pred CCCCceEEEEeCC------CCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH----HHHHHcCC-----cCceEE
Q 032418 44 SSSTRKLVLYSKP------GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQY-----EIPVLA 108 (141)
Q Consensus 44 ~~~~~~VtLYtkp------~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~----el~~kyg~-----~VPVl~ 108 (141)
|.....|++|++. +=-.|..++.+|+.+ ++.|+|+||.=|. ||++..|. .+|+||
T Consensus 127 Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf----------~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVF 196 (281)
T KOG2824|consen 127 PGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESF----------RVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVF 196 (281)
T ss_pred CCCCceEEEEEcccchhhhhHHHHHHHHHHHHhC----------ceEEEEecccccHHHHHHHHHHHhcccccCccCeEE
Confidence 5666789999864 334699999999997 8999999999764 55555554 378777
Q ss_pred EeccCCeEeeC
Q 032418 109 RVLSDGTEEAL 119 (141)
Q Consensus 109 ~~~idG~~l~~ 119 (141)
++|..++.
T Consensus 197 ---V~GryIGg 204 (281)
T KOG2824|consen 197 ---VKGRYIGG 204 (281)
T ss_pred ---EccEEecc
Confidence 89997754
No 236
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=91.87 E-value=1.3 Score=33.37 Aligned_cols=74 Identities=18% Similarity=0.362 Sum_probs=41.4
Q ss_pred CceEEEEeCCCCC---chH-----------HHHHHHHHHhhcCCCCCCCCceeEEEECCCCHH----------HHHHcCC
Q 032418 47 TRKLVLYSKPGCC---LCD-----------GLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE----------WEKSYQY 102 (141)
Q Consensus 47 ~~~VtLYtkp~C~---lC~-----------~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~e----------l~~kyg~ 102 (141)
|++|.||--.-|. .|- ...++|++ .+++++.+|+.++|+ +.++-|.
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~----------~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~ 70 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKE----------QGVEVERYNLAQNPQAFVENPEVNQLLQTEGA 70 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHH----------TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-G
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHh----------CCceEEEEccccCHHHHHhCHHHHHHHHHcCc
Confidence 5688888888873 452 23334433 389999999999874 3334455
Q ss_pred -cCceEEEeccCCeEeeCCCCCcccCHHHHHHHHH
Q 032418 103 -EIPVLARVLSDGTEEALPRLSPRIGVELIQKKIA 136 (141)
Q Consensus 103 -~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l~ 136 (141)
..|+++ +||+....|+ +-+.++|.+.+.
T Consensus 71 e~LPitl---VdGeiv~~G~---YPt~eEl~~~~~ 99 (123)
T PF06953_consen 71 EALPITL---VDGEIVKTGR---YPTNEELAEWLG 99 (123)
T ss_dssp GG-SEEE---ETTEEEEESS------HHHHHHHHT
T ss_pred ccCCEEE---ECCEEEEecC---CCCHHHHHHHhC
Confidence 489998 8999876554 345666665543
No 237
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=91.80 E-value=0.33 Score=42.81 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=54.0
Q ss_pred CCCCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeC
Q 032418 43 SSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEAL 119 (141)
Q Consensus 43 ~~~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~ 119 (141)
+-...+.++=|..|||..|++..++.++... .-.+-...+.+-+.|-+.-+..+.++|. .-|+|. .|.+|..+.|
T Consensus 40 nkdddiW~VdFYAPWC~HCKkLePiWdeVG~-elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk-~~kgd~a~dY 115 (468)
T KOG4277|consen 40 NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGH-ELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIK-FFKGDHAIDY 115 (468)
T ss_pred cccCCeEEEEeechhhhhcccccchhHHhCc-chhhcCCceeecccccccchhhHhhhccCCCceEE-EecCCeeeec
Confidence 3345678889999999999999999988621 1101112456666777777889999997 599987 4577777765
No 238
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=91.35 E-value=0.67 Score=33.11 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=38.1
Q ss_pred ceEEEE-eCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHH---HHHHcCCcCceEE
Q 032418 48 RKLVLY-SKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE---WEKSYQYEIPVLA 108 (141)
Q Consensus 48 ~~VtLY-tkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~e---l~~kyg~~VPVl~ 108 (141)
+.+.+| ...|||.|..-...|.+... .....++.+.-|+.++... +.++++...|++.
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~ 86 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLP---ELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYA 86 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHH---HHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEE
Confidence 444554 57899999998888876531 0112468888888775543 4455667788776
No 239
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=0.33 Score=44.29 Aligned_cols=58 Identities=19% Similarity=0.150 Sum_probs=41.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEEE
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLAR 109 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~~ 109 (141)
.++-|..|||+.|...++.++++++...+ ..++-+-++|.+.|.--..++. ..|+|..
T Consensus 387 VLvEfyAPWCgHCk~laP~~eeLAe~~~~--~~~vviAKmDaTaNd~~~~~~~-~fPTI~~ 444 (493)
T KOG0190|consen 387 VLVEFYAPWCGHCKALAPIYEELAEKYKD--DENVVIAKMDATANDVPSLKVD-GFPTILF 444 (493)
T ss_pred eEEEEcCcccchhhhhhhHHHHHHHHhcC--CCCcEEEEeccccccCcccccc-ccceEEE
Confidence 46789999999999999999887654333 3368888999998763222222 2888873
No 240
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=90.58 E-value=1.2 Score=31.71 Aligned_cols=50 Identities=20% Similarity=0.131 Sum_probs=37.2
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEEEeccCC
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDG 114 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~~~~idG 114 (141)
..+.+|+.++ .+|++++++|++.+.+|+ .|++++.|..+ ..|.+.+ ..+|
T Consensus 21 V~l~~f~~~~-~~~~e~~~ll~e~a~lSd-----kI~~~~~~~~~----------~~P~~~i-~~~~ 70 (94)
T cd02974 21 VELVASLDDS-EKSAELLELLEEIASLSD-----KITLEEDNDDE----------RKPSFSI-NRPG 70 (94)
T ss_pred EEEEEEeCCC-cchHHHHHHHHHHHHhCC-----ceEEEEecCCC----------CCCEEEE-ecCC
Confidence 3577898888 999999999999876544 78888877643 5788763 2444
No 241
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=90.51 E-value=0.59 Score=33.33 Aligned_cols=44 Identities=5% Similarity=-0.083 Sum_probs=25.3
Q ss_pred CceEEEEe-CCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC
Q 032418 47 TRKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN 93 (141)
Q Consensus 47 ~~~VtLYt-kp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d 93 (141)
...+..|. ..|||.|......|.+... . ....++.+.-+.++..
T Consensus 24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~--~-~~~~~~~vv~is~d~~ 68 (140)
T cd03017 24 KPVVLYFYPKDDTPGCTKEACDFRDLYE--E-FKALGAVVIGVSPDSV 68 (140)
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHH--H-HHHCCCEEEEEcCCCH
Confidence 34455554 6899999877666655421 0 1123566666666543
No 242
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=90.13 E-value=0.8 Score=31.77 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=40.3
Q ss_pred CCCceEEEEeCC-CCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH---HHHHHcCCcCceEE
Q 032418 45 SSTRKLVLYSKP-GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQYEIPVLA 108 (141)
Q Consensus 45 ~~~~~VtLYtkp-~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~---el~~kyg~~VPVl~ 108 (141)
...+.|..|... ||+.|......|.+... ...+.++.+--|..+... ++.++++...|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~---~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~ 88 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYK---KYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLS 88 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHH---HHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhh---hhccceEEeeecccccccchhhhhhhhcccccccc
Confidence 334566666666 99999888777766531 012347888888886543 35566777788876
No 243
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=89.16 E-value=0.88 Score=32.59 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=42.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEE
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLA 108 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~ 108 (141)
.+.||-.-.=|--.++.+-|.+..+ +.... .++++.+||.++|++++.++. -+|.++
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e--~~l~g-~y~LeVIDv~~qP~lAE~~~IvATPtLI 62 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILE--TEFQG-VYALKVIDVLKNPQLAEEDKILATPTLS 62 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHH--HhcCC-ceEEEEEEcccCHhHHhHCCEEEecHHh
Confidence 4677888788888877777766532 11222 389999999999999999987 589887
No 244
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=88.99 E-value=1.1 Score=37.02 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=37.6
Q ss_pred CCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHc--CCcCceEEEeccCCeE
Q 032418 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSY--QYEIPVLARVLSDGTE 116 (141)
Q Consensus 57 ~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~ky--g~~VPVl~~~~idG~~ 116 (141)
+||+|++.-..|..+. ..+.+..||+..-|++.... +..+|+|. .||+-
T Consensus 20 dcpf~qr~~m~L~~k~--------~~f~vttVd~~~kp~~f~~~sp~~~~P~l~---~d~~~ 70 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKG--------VPFKVTTVDLSRKPEWFLDISPGGKPPVLK---FDEKW 70 (221)
T ss_pred CChhHHHHHHHHHHcC--------CCceEEEeecCCCcHHHHhhCCCCCCCeEE---eCCce
Confidence 5999999999998652 26788888988888877655 34699988 67763
No 245
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=88.79 E-value=1.1 Score=33.17 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=37.2
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-------CH----HHHHH-cCCcCceEE
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-------NP----EWEKS-YQYEIPVLA 108 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-------d~----el~~k-yg~~VPVl~ 108 (141)
.....+..|...||+ |...-+.|.+... .....++.+.-+++++ ++ ++.++ ++...|++.
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~---~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~ 92 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYE---KYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFA 92 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHH---HhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeee
Confidence 334567789999999 9988888877532 1122467777776542 22 34444 566667653
No 246
>PRK09301 circadian clock protein KaiB; Provisional
Probab=88.70 E-value=1.1 Score=33.12 Aligned_cols=59 Identities=22% Similarity=0.143 Sum_probs=45.5
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEE
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLA 108 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~ 108 (141)
.-.+.||-.-.=|-=.++.+-|.+... +.... .++++.|||.++|++++.++. -+|+++
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE--~~l~g-~y~LeVIDv~~qPelAE~~~IvATPTLI 65 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILE--TEFKG-VYALKVIDVLKNPQLAEEDKILATPTLA 65 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHH--HhcCC-ceEEEEEEcccCHhHHhHCCeEEecHHh
Confidence 557889988888888888777766532 11222 489999999999999999987 489877
No 247
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=88.32 E-value=1.4 Score=31.21 Aligned_cols=60 Identities=8% Similarity=0.109 Sum_probs=34.8
Q ss_pred CCceEEEEe-CCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH---HHHHHc-CCcCceEE
Q 032418 46 STRKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSY-QYEIPVLA 108 (141)
Q Consensus 46 ~~~~VtLYt-kp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~---el~~ky-g~~VPVl~ 108 (141)
..+.+..|. ..||+.|....+.|.+... . ....++.+.-+..++.. .+.+++ +...|++.
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~--~-~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~ 86 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAE--E-FAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLS 86 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHH--H-HHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEE
Confidence 344555545 6799999998777766531 0 01236778777776432 234444 44556543
No 248
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=87.88 E-value=1.8 Score=31.18 Aligned_cols=41 Identities=7% Similarity=0.043 Sum_probs=28.1
Q ss_pred CceEEEEeCCC-CCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC
Q 032418 47 TRKLVLYSKPG-CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (141)
Q Consensus 47 ~~~VtLYtkp~-C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~ 92 (141)
.+.|..|...| |+.|......|.+... ...++.+--|+++.
T Consensus 27 k~vvl~f~~~~~c~~C~~e~~~l~~~~~-----~~~~~~vi~Is~d~ 68 (143)
T cd03014 27 KVKVISVFPSIDTPVCATQTKRFNKEAA-----KLDNTVVLTISADL 68 (143)
T ss_pred CeEEEEEEcCCCCCcCHHHHHHHHHHHH-----hcCCCEEEEEECCC
Confidence 34455555556 7999999988887743 22378888888764
No 249
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=1.6 Score=39.37 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=49.9
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcccC
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPRIG 127 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl~ 127 (141)
.+.-|-.-.||-|.++-+.|.-...+ +..|+-.-||=.--++-.+.-+. .||.++ .||+++..||.+
T Consensus 119 ~FETy~SltC~nCPDVVQALN~msvl-----Np~I~H~~IdGa~Fq~Evear~IMaVPtvf---lnGe~fg~GRmt---- 186 (520)
T COG3634 119 HFETYFSLTCHNCPDVVQALNLMSVL-----NPRIKHTAIDGALFQDEVEARNIMAVPTVF---LNGEEFGQGRMT---- 186 (520)
T ss_pred eEEEEEEeeccCChHHHHHHHHHHhc-----CCCceeEEecchhhHhHHHhccceecceEE---Ecchhhccccee----
Confidence 46778888999999998888765431 12455555544322222233344 599998 899999777655
Q ss_pred HHHHHHHHH
Q 032418 128 VELIQKKIA 136 (141)
Q Consensus 128 ~~~L~~~l~ 136 (141)
.+++.++|.
T Consensus 187 leeilaki~ 195 (520)
T COG3634 187 LEEILAKID 195 (520)
T ss_pred HHHHHHHhc
Confidence 777766664
No 250
>PTZ00057 glutathione s-transferase; Provisional
Probab=86.36 E-value=3.6 Score=31.79 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=42.2
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH-HHHH--H-----cC-C-cCceEEEeccCCeEe
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP-EWEK--S-----YQ-Y-EIPVLARVLSDGTEE 117 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~-el~~--k-----yg-~-~VPVl~~~~idG~~l 117 (141)
.+++||+.+.-+.|..++-.|+.. |++|+.+.+.+.. ++.+ + .. . .||++. .||..+
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~----------gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~---~~~~~l 69 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYL----------GIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILE---MDNIIF 69 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHc----------CCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEE---ECCEEE
Confidence 348899999999999999999987 8999999886432 2221 1 11 2 599998 678766
Q ss_pred e
Q 032418 118 A 118 (141)
Q Consensus 118 ~ 118 (141)
.
T Consensus 70 ~ 70 (205)
T PTZ00057 70 A 70 (205)
T ss_pred e
Confidence 4
No 251
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.34 E-value=1.6 Score=35.50 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=46.6
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH---HHHHHcCC-cCceEEEeccCCeEeeC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP---EWEKSYQY-EIPVLARVLSDGTEEAL 119 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~---el~~kyg~-~VPVl~~~~idG~~l~~ 119 (141)
|+..+|+--+..++|+-++-++.-. +++||+..+.... ++..+.-. .+|++. +||.++..
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a----------~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~---vDg~~i~Q 64 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYA----------GVSFEDKRITMEDAWEELKDKMPFGQLPVLE---VDGKKLVQ 64 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhc----------CCCcceeeeccccchhhhcccCCCCCCCEEe---ECCEeecc
Confidence 4567888889999999999888765 8999999998654 33344444 599998 89998863
No 252
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=86.22 E-value=2.3 Score=35.59 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=54.2
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeC-CCCC-
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEAL-PRLS- 123 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~-~~~~- 123 (141)
..-|+.+..++++-|..+-..|..++. .+..+.|..+....-+ +..+|.. .+|+|+ ++.+|+.+.. -.+.
T Consensus 147 ~~VVVHiY~~~~~~C~~mn~~L~~LA~-----kyp~vKFvkI~a~~~~-~~~~f~~~~LPtll-vYk~G~l~~~~V~l~~ 219 (265)
T PF02114_consen 147 TWVVVHIYEPGFPRCEIMNSCLECLAR-----KYPEVKFVKIRASKCP-ASENFPDKNLPTLL-VYKNGDLIGNFVGLTD 219 (265)
T ss_dssp -EEEEEEE-TTSCCHHHHHHHHHHHHH-----H-TTSEEEEEEECGCC-TTTTS-TTC-SEEE-EEETTEEEEEECTGGG
T ss_pred cEEEEEEEeCCCchHHHHHHHHHHHHH-----hCCceEEEEEehhccC-cccCCcccCCCEEE-EEECCEEEEeEEehHH
Confidence 446788999999999999999988753 3457899988886544 6677876 589988 5689986553 1222
Q ss_pred ---cccCHHHHHHHHH
Q 032418 124 ---PRIGVELIQKKIA 136 (141)
Q Consensus 124 ---~rl~~~~L~~~l~ 136 (141)
..+....|...|.
T Consensus 220 ~~g~df~~~dlE~~L~ 235 (265)
T PF02114_consen 220 LLGDDFFTEDLEAFLI 235 (265)
T ss_dssp CT-TT--HHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHH
Confidence 2355555555553
No 253
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=86.20 E-value=1.4 Score=30.22 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=32.0
Q ss_pred CCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEEEeccCCeEe
Q 032418 56 PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEE 117 (141)
Q Consensus 56 p~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~~~~idG~~l 117 (141)
+..+.|-++..+|+.. +++|+.++....+.... .-.||+|. .||+.+
T Consensus 15 ~~~~~~~kv~~~L~el----------glpye~~~~~~~~~~~P--~GkVP~L~---~dg~vI 61 (74)
T cd03079 15 PDNASCLAVQTFLKMC----------NLPFNVRCRANAEFMSP--SGKVPFIR---VGNQIV 61 (74)
T ss_pred CCCCCHHHHHHHHHHc----------CCCcEEEecCCccccCC--CCcccEEE---ECCEEE
Confidence 3456677999999987 89999887643211111 13599997 688866
No 254
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=85.56 E-value=3.5 Score=29.34 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=37.6
Q ss_pred CCceEEEEeCCCCCc-hHHHHHHHHHHhhcCCCCCCC---CceeEEEECCC---CHH----HHHHcCCcCceEE
Q 032418 46 STRKLVLYSKPGCCL-CDGLKEKLQAAFLLSGPDSLH---DVDLQVRDITT---NPE----WEKSYQYEIPVLA 108 (141)
Q Consensus 46 ~~~~VtLYtkp~C~l-C~~Ak~~L~~~~~~~~~~~~~---~i~~eevDId~---d~e----l~~kyg~~VPVl~ 108 (141)
....|..|..+||+. |......|.+... . .... ++.+.-|.++. +++ +.++++...|.+.
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~--~-~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~~~~~l~ 92 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALK--Q-LGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGPGWIGLT 92 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHH--H-hhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEE
Confidence 345688889999997 9987777766531 1 1112 38888888764 233 3445555566654
No 255
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=85.49 E-value=5.8 Score=35.28 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=46.0
Q ss_pred CCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcccCHHHHHHHHHHHhh
Q 032418 79 SLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPRIGVELIQKKIAAALR 140 (141)
Q Consensus 79 ~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l~~~~~ 140 (141)
++.+|.|-.||+.+|..+++++|. ..+.|. +|.+|..+.| ++-+.++-|.+.|.++++
T Consensus 87 E~~gigfg~VD~~Kd~klAKKLgv~E~~Siy-Vfkd~~~IEy---dG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 87 EDKGIGFGMVDSKKDAKLAKKLGVEEEGSIY-VFKDGEVIEY---DGERSADTLVEFLLDLLE 145 (383)
T ss_dssp GGCTEEEEEEETTTTHHHHHHHT--STTEEE-EEETTEEEEE----S--SHHHHHHHHHHHHS
T ss_pred cccCcceEEeccHHHHHHHHhcCccccCcEE-EEECCcEEEe---cCccCHHHHHHHHHHhcc
Confidence 456999999999999999999997 589887 6799998855 255678888888888775
No 256
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=85.21 E-value=6.8 Score=30.30 Aligned_cols=85 Identities=13% Similarity=0.102 Sum_probs=45.1
Q ss_pred eEEEEe-CCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-------------------------CHHHHHHcCC
Q 032418 49 KLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-------------------------NPEWEKSYQY 102 (141)
Q Consensus 49 ~VtLYt-kp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-------------------------d~el~~kyg~ 102 (141)
.|..|. ..||+.|..--..|.+... + ....++.+--|.++. +.+..+.||.
T Consensus 34 vvl~F~p~~~cp~C~~el~~l~~~~~--~-~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 34 SVFFFYPADFTFVCPTELEDLADKYA--E-LKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred EEEEEECCCcCCcCHHHHHHHHHHHH--H-HHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 344444 7999999987766654321 0 111245444444432 2234455663
Q ss_pred -------cCceEEEeccCCeEeeCCCC--C-cccCHHHHHHHHHH
Q 032418 103 -------EIPVLARVLSDGTEEALPRL--S-PRIGVELIQKKIAA 137 (141)
Q Consensus 103 -------~VPVl~~~~idG~~l~~~~~--~-~rl~~~~L~~~l~~ 137 (141)
..|..+++..||+....+.. . ++ ..+++.++|++
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~-~~~~ll~~l~~ 154 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGR-DASELLRKIKA 154 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCCCCCC-CHHHHHHHHHH
Confidence 24777755567876543321 1 33 56666666643
No 257
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=84.74 E-value=0.84 Score=37.34 Aligned_cols=54 Identities=17% Similarity=0.352 Sum_probs=35.3
Q ss_pred EEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHH--HHHHcCC-cCceEEEeccCCeEe
Q 032418 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPE--WEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 52 LYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~e--l~~kyg~-~VPVl~~~~idG~~l 117 (141)
||-=++||+|-+|+-+.--+ +++++++-...|.+ -.+..|. .||++.- .||+-+
T Consensus 3 LYIYdHCPfcvrarmi~Gl~----------nipve~~vL~nDDe~Tp~rmiG~KqVPiL~K--edg~~m 59 (215)
T COG2999 3 LYIYDHCPFCVRARMIFGLK----------NIPVELHVLLNDDEETPIRMIGQKQVPILQK--EDGRAM 59 (215)
T ss_pred eeEeccChHHHHHHHHhhcc----------CCChhhheeccCcccChhhhhcccccceEEc--cccccc
Confidence 56668999999999765443 67777666553332 3334455 6999872 566643
No 258
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=83.53 E-value=0.67 Score=34.75 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=27.7
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT 91 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId 91 (141)
+|++|.-..||||-.+.+.|.+... ...+++++.+-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~-----~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRA-----EYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHH-----HHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHH-----HhcCCcEEEeccc
Confidence 5899999999999999999988742 1124555554443
No 259
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=82.81 E-value=15 Score=28.59 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=57.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEEEeccCCeEe--eCCCCCcc-
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEE--ALPRLSPR- 125 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~~~~idG~~l--~~~~~~~r- 125 (141)
-|.=|++.|=|.|-..-++|.+.+. .-.+=.....+||++-+++.+-|+..-|+-+..|.+++.+ ..|.-++.
T Consensus 26 vViRFGr~~Dp~C~~mD~~L~~i~~----~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtgdn~K 101 (142)
T KOG3414|consen 26 VVIRFGRDWDPTCMKMDELLSSIAE----DVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKIDLGTGDNNK 101 (142)
T ss_pred EEEEecCCCCchHhhHHHHHHHHHH----HHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEeeCCCCCce
Confidence 4667999999999999999988642 1112246777999999999999998644433256788764 34443322
Q ss_pred -----cCHHHHHHHHHHHhh
Q 032418 126 -----IGVELIQKKIAAALR 140 (141)
Q Consensus 126 -----l~~~~L~~~l~~~~~ 140 (141)
-+++++..-+..++|
T Consensus 102 in~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 102 INFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred EEEEeccHHHHHHHHHHHHH
Confidence 234445555544443
No 260
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=82.72 E-value=3.2 Score=36.55 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=59.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhc-CCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCC
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLL-SGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLS 123 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~-~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~ 123 (141)
.+-.++=|..+||++-+..+...++.+.. -+-..+..+-+-.||.+.+..++.+|.. .-|++. +|.||+-.- -.-.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlK-vfrnG~~~~-rEYR 90 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLK-VFRNGEMMK-REYR 90 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceee-eeeccchhh-hhhc
Confidence 34566779999999999999888664210 0001224567888888888899999987 589987 458887432 1111
Q ss_pred cccCHHHHHHHHHHH
Q 032418 124 PRIGVELIQKKIAAA 138 (141)
Q Consensus 124 ~rl~~~~L~~~l~~~ 138 (141)
+.-..+.|.+.|..-
T Consensus 91 g~RsVeaL~efi~kq 105 (375)
T KOG0912|consen 91 GQRSVEALIEFIEKQ 105 (375)
T ss_pred cchhHHHHHHHHHHH
Confidence 334455566655543
No 261
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=81.98 E-value=4.6 Score=33.93 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=46.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHH-HHHcCCcCceEEEeccCCeEeeCCCCC
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW-EKSYQYEIPVLARVLSDGTEEALPRLS 123 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el-~~kyg~~VPVl~~~~idG~~l~~~~~~ 123 (141)
.+.|.+|+-.+|--|-..-+.|+.+.. . .++++ +|-..-+.+ .+++-..||-++ +||+.+..+-++
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgl----l--~~Vki--i~a~~p~f~~~~~~V~SvP~Vf---~DGel~~~dpVd 76 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGL----L--GKVKI--IDAELPPFLAFEKGVISVPSVF---IDGELVYADPVD 76 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCC----C--CCceE--EEcCCChHHHhhcceeecceEE---EcCeEEEcCCCC
Confidence 467899999999999999999998621 1 23433 555444443 344667899998 899977655544
No 262
>PRK11752 putative S-transferase; Provisional
Probab=81.88 E-value=6.3 Score=32.14 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=34.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEE--ECCC----CHHHHHHcC-CcCceEE
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVR--DITT----NPEWEKSYQ-YEIPVLA 108 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eev--DId~----d~el~~kyg-~~VPVl~ 108 (141)
..++||+.+ ++.|.++.-.|+++.. .+..+++|+.+ |+.. .+++.+.-= -.||+++
T Consensus 43 ~~~~Ly~~~-s~~~~rV~i~L~e~~~----~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv 105 (264)
T PRK11752 43 HPLQLYSLG-TPNGQKVTIMLEELLA----LGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALL 105 (264)
T ss_pred CCeEEecCC-CCchHHHHHHHHHHHh----ccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEE
Confidence 358999965 9999999999987400 01124455554 4433 234544322 3699997
No 263
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.65 E-value=9.8 Score=33.91 Aligned_cols=51 Identities=20% Similarity=0.194 Sum_probs=36.5
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEEEeccCCe
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGT 115 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~~~~idG~ 115 (141)
..+.+|+. .|.+|++++++|+++..+|+ .+++++.+.+ ...|.+.+. .||+
T Consensus 21 v~~~~~~~-~~~~~~~~~~~~~~~~~~s~-----~i~~~~~~~~----------~~~p~~~~~-~~~~ 71 (517)
T PRK15317 21 IELVASLD-DSEKSAELKELLEEIASLSD-----KITVEEDSLD----------VRKPSFSIT-RPGE 71 (517)
T ss_pred EEEEEEeC-CCchHHHHHHHHHHHHHhCC-----ceEEEEccCC----------CCCCEEEEE-cCCc
Confidence 35777877 79999999999999876543 6888776643 347887632 4553
No 264
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=81.59 E-value=5 Score=31.67 Aligned_cols=68 Identities=10% Similarity=0.156 Sum_probs=40.5
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-------C-H---HHHH-HcCCcCceEEEecc
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-------N-P---EWEK-SYQYEIPVLARVLS 112 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-------d-~---el~~-kyg~~VPVl~~~~i 112 (141)
...+.+..+...||++|.. -..|.++.. .....++.+--+..++ + . ++.+ +|+.+.|++-...+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~---~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dv 99 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQK---AWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEV 99 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHH---HHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEcc
Confidence 3456688999999999975 345555421 0122356666665542 1 2 2444 58888999843346
Q ss_pred CCeE
Q 032418 113 DGTE 116 (141)
Q Consensus 113 dG~~ 116 (141)
+|+.
T Consensus 100 nG~~ 103 (183)
T PRK10606 100 NGEG 103 (183)
T ss_pred CCCC
Confidence 6663
No 265
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=81.33 E-value=0.54 Score=33.10 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=35.9
Q ss_pred EeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC-cCceEE
Q 032418 53 YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY-EIPVLA 108 (141)
Q Consensus 53 Ytkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~-~VPVl~ 108 (141)
|-...=+--..+.+.++.... + .....++++.|||.++|++++.++. -.|+++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~--~-~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCE--E-YLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHH--C-HCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHH--h-hCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 333333444566666666532 1 1234799999999999999998886 478876
No 266
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=80.99 E-value=11 Score=33.57 Aligned_cols=51 Identities=27% Similarity=0.277 Sum_probs=36.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEEEeccCCe
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGT 115 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~~~~idG~ 115 (141)
.+.+|+. .|++|++++++|++...+|+ .+++++.|.++ .+.|.+.+ +.||+
T Consensus 22 ~~~~~~~-~~~~~~~~~~~~~~~~~~s~-----ki~~~~~~~~~---------~~~p~~~~-~~~~~ 72 (515)
T TIGR03140 22 TLVLSAG-SHEKSKELLELLDEIASLSD-----KISLTQNTADT---------LRKPSFTI-LRDGA 72 (515)
T ss_pred EEEEEeC-CCchhHHHHHHHHHHHHhCC-----CeEEEEecCCc---------CCCCeEEE-ecCCc
Confidence 4667777 79999999999999876443 78888877543 24588753 25554
No 267
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=80.46 E-value=5.6 Score=33.69 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=43.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--C-----C----H-------HHHHHcCC-c--Cce
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--T-----N----P-------EWEKSYQY-E--IPV 106 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~-----d----~-------el~~kyg~-~--VPV 106 (141)
-.|+|||..+|.-|.-|-++|.+..+ ...-+.+. +.|| + | + .+...++. + .|.
T Consensus 43 ~VVELfTSQGCsSCPPAd~~l~k~a~-----~~~vlALs-yhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQ 116 (261)
T COG5429 43 GVVELFTSQGCSSCPPADANLAKLAD-----DPGVLALS-YHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQ 116 (261)
T ss_pred eEEEEeecCCcCCCChHHHHHHHhcc-----CCCEEEEE-EeecccccCCccccccchhhhHHHHHHHHhhccCCCCCch
Confidence 35899999999999999999999842 21112222 2333 1 2 1 24444554 3 577
Q ss_pred EEEeccCCeEeeCCCCC
Q 032418 107 LARVLSDGTEEALPRLS 123 (141)
Q Consensus 107 l~~~~idG~~l~~~~~~ 123 (141)
.+ +||.+...|..-
T Consensus 117 av---vnGr~~~~Gad~ 130 (261)
T COG5429 117 AV---VNGRVHANGADP 130 (261)
T ss_pred he---eechhhhcCCCH
Confidence 77 799988777744
No 268
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.28 E-value=7.3 Score=31.21 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=38.2
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--CC----HHHHHHcC-CcCceEE
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN----PEWEKSYQ-YEIPVLA 108 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~d----~el~~kyg-~~VPVl~ 108 (141)
+++++|+.+.=+.|..+.-.++.+ +++|+.+.|+ .. |+.....- .+||+++
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~----------~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~ 58 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKEL----------GLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALE 58 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHc----------CCceeEEEeeccccccCCHHHHhcCcCCCCCeEe
Confidence 357899999999999999998887 6777777555 32 45554443 4799997
No 269
>PRK10542 glutathionine S-transferase; Provisional
Probab=79.01 E-value=4.9 Score=30.37 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=29.6
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCC-------HHHHHHcC--CcCceEEEeccCCeEee
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTN-------PEWEKSYQ--YEIPVLARVLSDGTEEA 118 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d-------~el~~kyg--~~VPVl~~~~idG~~l~ 118 (141)
+||+.++ +.+.++.-.|+++ |++|+.+.|+-. +++ .+.+ -+|||+.. .||..+.
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~----------gi~~e~~~v~~~~~~~~~~~~~-~~~nP~g~vPvL~~--~~g~~l~ 64 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRES----------GLDFTLVSVDLAKKRLENGDDY-LAINPKGQVPALLL--DDGTLLT 64 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHc----------CCCceEEEeecccccccCChHH-HHhCcCCCCCeEEe--CCCcEee
Confidence 4666553 2244555566665 677776665521 233 3333 36999972 3665554
No 270
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.98 E-value=1.9 Score=35.70 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHh
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAF 72 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~ 72 (141)
...+|.+|+-+-||||-.-++-|++..
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~ 30 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKAL 30 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHH
Confidence 357899999999999999999998863
No 271
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=78.84 E-value=7 Score=28.56 Aligned_cols=43 Identities=16% Similarity=-0.015 Sum_probs=22.3
Q ss_pred CceEEEEe-CCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC
Q 032418 47 TRKLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (141)
Q Consensus 47 ~~~VtLYt-kp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~ 92 (141)
...|..|. ..+|+.|......|.+... . ....++.+.-|++++
T Consensus 31 k~~ll~f~~~~~~p~C~~~~~~l~~~~~--~-~~~~~v~vi~Is~d~ 74 (154)
T PRK09437 31 QRVLVYFYPKAMTPGCTVQACGLRDNMD--E-LKKAGVVVLGISTDK 74 (154)
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHH--H-HHHCCCEEEEEcCCC
Confidence 34455554 3478899876555544311 0 112356666666553
No 272
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.16 E-value=2 Score=32.27 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHh
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAF 72 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~ 72 (141)
+|++|.-+.||||-.+.+.|++..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~ 25 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLK 25 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHH
Confidence 689999999999999999999874
No 273
>PRK13190 putative peroxiredoxin; Provisional
Probab=77.99 E-value=25 Score=27.61 Aligned_cols=88 Identities=11% Similarity=0.086 Sum_probs=47.7
Q ss_pred CceEEE--EeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC---------------------------CHHHH
Q 032418 47 TRKLVL--YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---------------------------NPEWE 97 (141)
Q Consensus 47 ~~~VtL--Ytkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~---------------------------d~el~ 97 (141)
.+.+.| |-..+|+.|..-...|.+... + ....++.+--+.+++ +.++.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~--~-f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia 103 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYE--D-FKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA 103 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHH--H-HHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH
Confidence 334444 688999999987666654321 0 011244444444442 23445
Q ss_pred HHcCC-------cCceEEEeccCCeEee---CCCCCcccCHHHHHHHHHHH
Q 032418 98 KSYQY-------EIPVLARVLSDGTEEA---LPRLSPRIGVELIQKKIAAA 138 (141)
Q Consensus 98 ~kyg~-------~VPVl~~~~idG~~l~---~~~~~~rl~~~~L~~~l~~~ 138 (141)
+.||. .+|.++++..||+... ++...+| ..+++.+.|+.+
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr-~~~ellr~l~~l 153 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGR-NIDEIIRITKAL 153 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCC-CHHHHHHHHHHh
Confidence 55664 3688776556776532 2222344 666666666654
No 274
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=77.79 E-value=10 Score=25.41 Aligned_cols=46 Identities=9% Similarity=0.221 Sum_probs=26.8
Q ss_pred CchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--CC-----HHHHH-Hc--C---CcCceEEEeccCCeEe
Q 032418 59 CLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN-----PEWEK-SY--Q---YEIPVLARVLSDGTEE 117 (141)
Q Consensus 59 ~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~d-----~el~~-ky--g---~~VPVl~~~~idG~~l 117 (141)
+.|..++-+|+.. +++|+.+.|+ +. +++.. .+ + ..||++. .||..+
T Consensus 10 ~~~~~~~~~l~~~----------gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~---~~g~~l 68 (82)
T cd03075 10 GLAQPIRLLLEYT----------GEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYI---DGDVKL 68 (82)
T ss_pred cccHHHHHHHHHc----------CCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEE---ECCEEE
Confidence 5677777777765 5666655554 31 23221 11 1 2699997 577655
No 275
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=76.58 E-value=28 Score=25.72 Aligned_cols=72 Identities=8% Similarity=0.012 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhcCCCCCCCC-ceeEEEECCCCHHHHHHcCC---cCceEEEeccCCeEeeCCCCCcccCHHHHHHHHHHH
Q 032418 63 GLKEKLQAAFLLSGPDSLHD-VDLQVRDITTNPEWEKSYQY---EIPVLARVLSDGTEEALPRLSPRIGVELIQKKIAAA 138 (141)
Q Consensus 63 ~Ak~~L~~~~~~~~~~~~~~-i~~eevDId~d~el~~kyg~---~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l~~~ 138 (141)
..++.|++.+. ..... +.|.++|.++.+...+.+|. ..|.+.....++. -|....+.++.+.+.+.+.+.
T Consensus 41 ~~~~~l~~vAk----~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~--KY~~~~~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 41 KYLEILKSVAE----KFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKM--KFATLKGSFSEDGINEFLREL 114 (130)
T ss_pred HHHHHHHHHHH----HhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccC--ccccccCccCHHHHHHHHHHH
Confidence 44555555432 12234 89999999998888888884 4898774322221 344466778899999998876
Q ss_pred hh
Q 032418 139 LR 140 (141)
Q Consensus 139 ~~ 140 (141)
+.
T Consensus 115 l~ 116 (130)
T cd02983 115 SY 116 (130)
T ss_pred Hc
Confidence 53
No 276
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=75.38 E-value=11 Score=28.54 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=25.9
Q ss_pred CceEEEEeCCC-CCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC
Q 032418 47 TRKLVLYSKPG-CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (141)
Q Consensus 47 ~~~VtLYtkp~-C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~ 92 (141)
...|..|...| |+.|..-...|.+... ...++.+.-+.+|+
T Consensus 45 k~vvl~f~~s~~cp~C~~e~~~l~~~~~-----~~~~~~vv~vs~D~ 86 (167)
T PRK00522 45 KRKVLNIFPSIDTGVCATSVRKFNQEAA-----ELDNTVVLCISADL 86 (167)
T ss_pred CEEEEEEEcCCCCCccHHHHHHHHHHHH-----HcCCcEEEEEeCCC
Confidence 34565666666 9999998877777632 11256666666653
No 277
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=74.71 E-value=9.1 Score=28.15 Aligned_cols=77 Identities=12% Similarity=0.234 Sum_probs=46.8
Q ss_pred ceEEEE-eCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH----HHHHHcCC--cCceEEEeccCCeEeeCC
Q 032418 48 RKLVLY-SKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP----EWEKSYQY--EIPVLARVLSDGTEEALP 120 (141)
Q Consensus 48 ~~VtLY-tkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~----el~~kyg~--~VPVl~~~~idG~~l~~~ 120 (141)
..+.|| ....||-=.+|.+.+++... ..+.++++..+||-++. +.+++||. .=|+++ .+.||+.+ |
T Consensus 20 ~~~~iFKHSt~C~IS~~a~~~~e~~~~----~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i-li~~g~~v--~ 92 (105)
T PF11009_consen 20 KPVLIFKHSTRCPISAMALREFEKFWE----ESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI-LIKNGKVV--W 92 (105)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHH----HHT----EEEEEGGGGHHHHHHHHHHHT----SSEEE-EEETTEEE--E
T ss_pred CcEEEEEeCCCChhhHHHHHHHHHHhh----cCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE-EEECCEEE--E
Confidence 345555 45559999999999988743 11223999999998764 46788886 589987 45899966 3
Q ss_pred CCCcc-cCHHHH
Q 032418 121 RLSPR-IGVELI 131 (141)
Q Consensus 121 ~~~~r-l~~~~L 131 (141)
.-+|. ++.+.|
T Consensus 93 ~aSH~~It~~~l 104 (105)
T PF11009_consen 93 HASHWDITAEAL 104 (105)
T ss_dssp EEEGGG-SHHHH
T ss_pred ECccccCCHHhc
Confidence 34433 444443
No 278
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=74.44 E-value=5.4 Score=31.30 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.0
Q ss_pred CceEEEEeCCCCCchHHHHHHH
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKL 68 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L 68 (141)
.+.|+-|...+||+|....+.+
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccc
Confidence 5679999999999999987654
No 279
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=74.11 E-value=36 Score=26.65 Aligned_cols=38 Identities=8% Similarity=-0.091 Sum_probs=23.6
Q ss_pred EEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC
Q 032418 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (141)
Q Consensus 52 LYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~ 92 (141)
.|-..+||.|..-...|.+... .....++.+--+.++.
T Consensus 32 ~~pa~~cp~C~~el~~l~~~~~---~f~~~gv~vigvS~D~ 69 (203)
T cd03016 32 SHPADFTPVCTTELGAFAKLAP---EFKKRNVKLIGLSVDS 69 (203)
T ss_pred EecCCCCCcCHHHHHHHHHHHH---HHHHcCCEEEEEECCC
Confidence 5778889999987776655421 0112356666666653
No 280
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=72.93 E-value=5.5 Score=27.93 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=28.2
Q ss_pred EeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH--HHHHHcC
Q 032418 53 YSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP--EWEKSYQ 101 (141)
Q Consensus 53 Ytkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~--el~~kyg 101 (141)
|---+||+|.....++.+. +. .-.++.+|+.+++ ++.+.++
T Consensus 2 ~YDg~C~lC~~~~~~l~~~------d~--~~~l~~~~~~~~~~~~~~~~~~ 44 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR------DR--GGRLRFVDIQSEPDQALLASYG 44 (114)
T ss_pred EECCCCHhHHHHHHHHHhc------CC--CCCEEEEECCChhhhhHHHhcC
Confidence 4556899999999999987 12 3456678885433 3445555
No 281
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=72.40 E-value=2.6 Score=31.53 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHh
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAF 72 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~ 72 (141)
|++|+-+-||||--+++.|++..
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~ 23 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALA 23 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHH
Confidence 57899999999999999999863
No 282
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=71.51 E-value=13 Score=30.52 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=32.3
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHH
Q 032418 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEW 96 (141)
Q Consensus 44 ~~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el 96 (141)
......+.+|.+.+|+-|+..-..|.. ....+++..++-..|.+.
T Consensus 106 ~~~~~rlalFvkd~C~~C~~~~~~l~a--------~~~~~Diylvgs~~dD~~ 150 (200)
T TIGR03759 106 LQGGGRLALFVKDDCVACDARVQRLLA--------DNAPLDLYLVGSQGDDER 150 (200)
T ss_pred cCCCCeEEEEeCCCChHHHHHHHHHhc--------CCCceeEEEecCCCCHHH
Confidence 344678999999999999988776643 234688888884445443
No 283
>PRK13599 putative peroxiredoxin; Provisional
Probab=70.74 E-value=53 Score=26.31 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=46.7
Q ss_pred EEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC---------------------------CHHHHHHcCC-
Q 032418 51 VLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT---------------------------NPEWEKSYQY- 102 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~---------------------------d~el~~kyg~- 102 (141)
..|-+.+||.|..--..+.+... .....++.+--+.+|+ +.++.+.||.
T Consensus 34 ~~~pa~~tpvCt~El~~l~~~~~---~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 34 FSHPADFTPVCTTEFVEFARKAN---DFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHHHHH---HHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 46778889999986655544321 0111245555455443 2234555664
Q ss_pred -------cCceEEEeccCCeEee---CCCCCcccCHHHHHHHHHHH
Q 032418 103 -------EIPVLARVLSDGTEEA---LPRLSPRIGVELIQKKIAAA 138 (141)
Q Consensus 103 -------~VPVl~~~~idG~~l~---~~~~~~rl~~~~L~~~l~~~ 138 (141)
.+|.++++..||+... ++-..+| ..+++.+.|..+
T Consensus 111 ~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr-~~~eilr~l~~l 155 (215)
T PRK13599 111 HPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGR-NVDEILRALKAL 155 (215)
T ss_pred ccCCCCceeeEEEEECCCCEEEEEEEcCCCCCC-CHHHHHHHHHHh
Confidence 3688886556787533 2333355 556666666543
No 284
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=70.74 E-value=4.2 Score=31.79 Aligned_cols=25 Identities=20% Similarity=-0.104 Sum_probs=22.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHh
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAF 72 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~ 72 (141)
++|.+|+-.-||||=-+++.|++..
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~ 25 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQ 25 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHH
Confidence 5788999999999999999998763
No 285
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=70.28 E-value=19 Score=27.80 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=33.7
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCC
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQY 102 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~ 102 (141)
+..+++---.|++|.....+|.+. +....+.|-.+.-+....+.+.++.
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~------D~~~~i~f~~~q~e~g~~~l~~~~l 56 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRR------DQGGRIRFAALQSEPGQALLEAAGL 56 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHh------ccCCcEEEEeccCchhhhHHhhcCC
Confidence 445667777899999999999987 3434555544444445567777775
No 286
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=67.30 E-value=6.7 Score=29.69 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHHh
Q 032418 50 LVLYSKPGCCLCDGLKEKLQAAF 72 (141)
Q Consensus 50 VtLYtkp~C~lC~~Ak~~L~~~~ 72 (141)
|++|+-+-||||-.+...|.+..
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~ 23 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKAL 23 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHH
Confidence 57899999999999999998763
No 287
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.54 E-value=17 Score=28.71 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=30.2
Q ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC
Q 032418 44 SSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (141)
Q Consensus 44 ~~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~ 92 (141)
+.....+..|.-..||+|.+.-+.+++.... .+...+.|....+.+
T Consensus 82 ~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~---~~~~~~~~~~~~f~~ 127 (244)
T COG1651 82 PYAPVTVVEFFDYTCPYCKEAFPELKKKYID---DGKVRLVLREFPFLD 127 (244)
T ss_pred CCCCceEEEEecCcCccHHHHHHHHHHHhhh---cCCCceEEEEeecCC
Confidence 3336689999999999998888888775321 222234555555554
No 288
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=66.00 E-value=79 Score=26.48 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=46.1
Q ss_pred CceEEEE--eCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC----------------------------CHHH
Q 032418 47 TRKLVLY--SKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT----------------------------NPEW 96 (141)
Q Consensus 47 ~~~VtLY--tkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~----------------------------d~el 96 (141)
...+.|| -..||+.|..-...+.+... .....++++--+.+|+ +.++
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~---ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLK---EFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHH---HHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 3344444 57899999986555543321 0111244444444433 2345
Q ss_pred HHHcCC------cCceEEEeccCCeEeeC---CCCCcccCHHHHHHHHHHH
Q 032418 97 EKSYQY------EIPVLARVLSDGTEEAL---PRLSPRIGVELIQKKIAAA 138 (141)
Q Consensus 97 ~~kyg~------~VPVl~~~~idG~~l~~---~~~~~rl~~~~L~~~l~~~ 138 (141)
.+.||. .+|.++++..||+.... +.-.+| ..+++.+.|+++
T Consensus 175 akayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr-~v~eiLr~l~al 224 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGR-SVDETLRLFDAV 224 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCC-CHHHHHHHHHHh
Confidence 556664 36887765557775432 222244 666666666543
No 289
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=63.92 E-value=5.4 Score=29.76 Aligned_cols=34 Identities=6% Similarity=0.162 Sum_probs=22.6
Q ss_pred HHHHcCC-cCceEEEeccCCeEeeCCCCCcccCHHHHHHHHH
Q 032418 96 WEKSYQY-EIPVLARVLSDGTEEALPRLSPRIGVELIQKKIA 136 (141)
Q Consensus 96 l~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l~ 136 (141)
.+.++|. ++|.++ +||+...+|... .+++.++|+
T Consensus 159 ~a~~~gv~GvP~~v---v~g~~~~~G~~~----~~~l~~~l~ 193 (193)
T PF01323_consen 159 EARQLGVFGVPTFV---VNGKYRFFGADR----LDELEDALQ 193 (193)
T ss_dssp HHHHTTCSSSSEEE---ETTTEEEESCSS----HHHHHHHH-
T ss_pred HHHHcCCcccCEEE---ECCEEEEECCCC----HHHHHHHhC
Confidence 3445665 699998 699866555544 667766653
No 290
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=63.67 E-value=9.8 Score=28.67 Aligned_cols=41 Identities=2% Similarity=-0.019 Sum_probs=24.4
Q ss_pred eEEEEe-CCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC
Q 032418 49 KLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (141)
Q Consensus 49 ~VtLYt-kp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~ 92 (141)
.|..|. ..||+.|......|.+... .....++.+.-|.++.
T Consensus 32 vvl~F~~~~~c~~C~~~l~~l~~~~~---~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 32 VVLFFYPLDFTFVCPTEIIAFSDRYE---EFKKLNAEVLGVSTDS 73 (173)
T ss_pred EEEEEECCCCCCcCHHHHHHHHHHHH---HHHHCCCEEEEEecCC
Confidence 344444 7899999998777765421 0112356666666553
No 291
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=60.74 E-value=32 Score=26.50 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=50.5
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEEEeccCCeEee--CCCCC
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEEA--LPRLS 123 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~~~~idG~~l~--~~~~~ 123 (141)
-|.-|+++|=|.|-+.-+.|.+.+. .-.+-..+..+||++-|++-+.|....|..+-.|-+++.+- +|.-.
T Consensus 23 vViRFG~d~d~~Cm~mDeiL~~~a~----~v~~~a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~rnkhm~vD~Gtgn 95 (133)
T PF02966_consen 23 VVIRFGRDWDPVCMQMDEILYKIAE----KVKNFAVIYLVDIDEVPDFNQMYELYDPCTVMFFFRNKHMMVDFGTGN 95 (133)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHH----HHTTTEEEEEEETTTTHCCHHHTTS-SSEEEEEEETTEEEEEESSSSS
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHH----HhhcceEEEEEEcccchhhhcccccCCCeEEEEEecCeEEEEEecCCC
Confidence 4678999999999999999977532 01123567889999999998999888998654556888743 44433
No 292
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=58.46 E-value=88 Score=24.53 Aligned_cols=85 Identities=12% Similarity=0.109 Sum_probs=44.2
Q ss_pred eEEEEe-CCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC-------------------------CCHHHHHHcCC
Q 032418 49 KLVLYS-KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT-------------------------TNPEWEKSYQY 102 (141)
Q Consensus 49 ~VtLYt-kp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId-------------------------~d~el~~kyg~ 102 (141)
.|..|. ..||+.|..--..|.+... + ....++.+--|.+| .+.++.+.||.
T Consensus 34 vvL~F~P~~~~p~C~~el~~l~~~~~--~-f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 34 SVFFFYPADFTFVCPTELGDVADHYE--E-LQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred EEEEEECCCCCCcCHHHHHHHHHHHH--H-HHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 333334 8999999986555544321 0 11123333333332 34456677774
Q ss_pred -----cC--ceEEEeccCCeEeeCC--CCC-cccCHHHHHHHHHH
Q 032418 103 -----EI--PVLARVLSDGTEEALP--RLS-PRIGVELIQKKIAA 137 (141)
Q Consensus 103 -----~V--PVl~~~~idG~~l~~~--~~~-~rl~~~~L~~~l~~ 137 (141)
.+ |.++++..||+..... ... +| ..+++.+.|.+
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~-~~~eil~~l~a 154 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGR-DASDLLRKIKA 154 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCCCCC-CHHHHHHHHHh
Confidence 35 8877655678754322 112 33 56666666644
No 293
>PRK13191 putative peroxiredoxin; Provisional
Probab=56.67 E-value=1e+02 Score=24.65 Aligned_cols=38 Identities=5% Similarity=-0.085 Sum_probs=24.5
Q ss_pred EEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC
Q 032418 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (141)
Q Consensus 52 LYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~ 92 (141)
.|-..+|+.|..-...|.+... .....++++--+.+|.
T Consensus 40 f~pa~ftpvC~tEl~~l~~~~~---ef~~~g~~VigvS~Ds 77 (215)
T PRK13191 40 SHPGDFTPVCTTEFYSFAKKYE---EFKKLNTELIGLSVDS 77 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHH---HHHHCCCEEEEEECCC
Confidence 6789999999997777765431 0112356666666664
No 294
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=56.09 E-value=13 Score=28.81 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=23.2
Q ss_pred EEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEEC
Q 032418 52 LYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDI 90 (141)
Q Consensus 52 LYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDI 90 (141)
+|+.|-|++|-...+.+.++.. .....|.+..+=.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~----~~~~~i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKE----EYGNKIEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHH----HS-TTEEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHH----HcCCcEEEEEEEc
Confidence 7999999999999999988743 1223466666544
No 295
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=55.31 E-value=34 Score=30.31 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=32.8
Q ss_pred ceEEEEeCCC--CCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCc
Q 032418 48 RKLVLYSKPG--CCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIP 105 (141)
Q Consensus 48 ~~VtLYtkp~--C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VP 105 (141)
.+|++...+| .-.+..+.++|+... .+++|+++|+- .+..+++|..+|
T Consensus 42 ~~I~vipGDGIGpEV~~aa~~Vl~a~~--------~~ie~~~~~~G--~~~~~~~G~~lp 91 (372)
T PLN00118 42 ITATLFPGDGIGPEIAESVKQVFTAAG--------VPIEWEEHYVG--TTVDPRTGSFLT 91 (372)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcC--------CCeEEEEEeCc--HHHHHhcCCcCC
Confidence 6899998887 557899999998641 25777777654 334455555444
No 296
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.31 E-value=33 Score=32.81 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=42.1
Q ss_pred EeCCCCCchHHHHHH------HHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcC--------C-cCceEEEeccCCeEe
Q 032418 53 YSKPGCCLCDGLKEK------LQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ--------Y-EIPVLARVLSDGTEE 117 (141)
Q Consensus 53 Ytkp~C~lC~~Ak~~------L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg--------~-~VPVl~~~~idG~~l 117 (141)
-+-.+||||+.+.+. +.+.. + ..|-=.+||-++.|++-+.|. . +=|-.+..-.||+++
T Consensus 50 IGys~CHWChVM~~ESf~d~eiA~~l------N-~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 50 IGYSTCHWCHVMAHESFEDPEIAAIL------N-ENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPF 122 (667)
T ss_pred eccccccchHHHhhhcCCCHHHHHHH------H-hCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCcee
Confidence 456799999987532 11110 0 134344567667776555442 3 345433223799987
Q ss_pred eCCCCCc------ccCHHHHHHHHHHHhh
Q 032418 118 ALPRLSP------RIGVELIQKKIAAALR 140 (141)
Q Consensus 118 ~~~~~~~------rl~~~~L~~~l~~~~~ 140 (141)
+-|--.+ +-.=-++.++|.+..+
T Consensus 123 fagTY~P~e~r~g~pGf~~lL~~i~~~W~ 151 (667)
T COG1331 123 FAGTYFPKEDRYGRPGFKQLLEAIRETWR 151 (667)
T ss_pred eeeeecCCcccCCCcCHHHHHHHHHHHHH
Confidence 7432222 2334456666655443
No 297
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=54.44 E-value=49 Score=27.35 Aligned_cols=87 Identities=11% Similarity=0.215 Sum_probs=61.3
Q ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCc-CceEEEeccCCeEeeC--CC
Q 032418 45 SSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTEEAL--PR 121 (141)
Q Consensus 45 ~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~-VPVl~~~~idG~~l~~--~~ 121 (141)
.+.+.|.-|.+|.=.-|.-+-.-|+.+++ -..+..|..||...-|=+..+.+.. +|.|. .+.||+...+ ||
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk-----~h~eTrFikvnae~~PFlv~kL~IkVLP~v~-l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAK-----RHVETRFIKVNAEKAPFLVTKLNIKVLPTVA-LFKNGKTVDYVVGF 156 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHH-----hcccceEEEEecccCceeeeeeeeeEeeeEE-EEEcCEEEEEEeeH
Confidence 34677888999986666655555555432 1237899999999999899999985 79987 4589987543 44
Q ss_pred CC----cccCHHHHHHHHHH
Q 032418 122 LS----PRIGVELIQKKIAA 137 (141)
Q Consensus 122 ~~----~rl~~~~L~~~l~~ 137 (141)
-+ ..++.+.|.+.|..
T Consensus 157 ~dLGnkDdF~te~LE~rL~~ 176 (211)
T KOG1672|consen 157 TDLGNKDDFTTETLENRLAK 176 (211)
T ss_pred hhcCCCCcCcHHHHHHHHhh
Confidence 33 23677777777754
No 298
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=50.68 E-value=17 Score=29.51 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=31.9
Q ss_pred EEECCCCHHHHHHcCC-cCceEEEeccCCeEeeCCCCCcccCHHHHHHHHHH
Q 032418 87 VRDITTNPEWEKSYQY-EIPVLARVLSDGTEEALPRLSPRIGVELIQKKIAA 137 (141)
Q Consensus 87 evDId~d~el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l~~ 137 (141)
..+|+++.++.+++|. ..|.++ +.||+.+ .+....++|.+.|.+
T Consensus 185 ~~~v~~~~~la~~lgi~gTPtiv--~~~G~~~-----~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 185 DVDIADHYALGVQFGVQGTPAIV--LSNGTLV-----PGYQGPKEMKAFLDE 229 (232)
T ss_pred cchHHHhHHHHHHcCCccccEEE--EcCCeEe-----eCCCCHHHHHHHHHH
Confidence 3567778899999997 599988 2699865 233457777777764
No 299
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=50.15 E-value=1.3e+02 Score=24.17 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=36.4
Q ss_pred CCceEEEEeCC-----CCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHH
Q 032418 46 STRKLVLYSKP-----GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS 99 (141)
Q Consensus 46 ~~~~VtLYtkp-----~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~k 99 (141)
...+|++|..+ .=++=..++.+|++... .....|.++.+|.+.+++..++
T Consensus 25 ~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~----~s~g~i~v~~iDp~~~~~~~~~ 79 (271)
T PF09822_consen 25 EPVTITVYFSRELPPELSPLRKQVRDLLDEYAR----YSPGKIKVEFIDPDENPSEAEE 79 (271)
T ss_pred CCEEEEEEECCCcchhhhHHHHHHHHHHHHHHH----hCCCceEEEEECCCCChHHHHH
Confidence 34578888887 56677788888888753 2222699999999888876655
No 300
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.67 E-value=75 Score=27.95 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=51.4
Q ss_pred ccCCccccccCCCCCCCCceEEEEeCC----CCCchHHHHHHHHHHhhc---CCCCCC-CCceeEEEECCCCHHHHHHcC
Q 032418 30 GFSPLAYSSSSSSSSSSTRKLVLYSKP----GCCLCDGLKEKLQAAFLL---SGPDSL-HDVDLQVRDITTNPEWEKSYQ 101 (141)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~VtLYtkp----~C~lC~~Ak~~L~~~~~~---~~~~~~-~~i~~eevDId~d~el~~kyg 101 (141)
-++...++-=.-+.+..-.-|++||.. +|.+|..+.+...-.+.. +.++.+ .++=|.+||.++-|+..+.++
T Consensus 44 ~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ 123 (331)
T KOG2603|consen 44 RMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLN 123 (331)
T ss_pred EecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhc
Confidence 344444433333444444568899874 599999998766433210 011111 256699999999999999998
Q ss_pred C-cCceEEE
Q 032418 102 Y-EIPVLAR 109 (141)
Q Consensus 102 ~-~VPVl~~ 109 (141)
. .+|-++.
T Consensus 124 ln~~P~l~~ 132 (331)
T KOG2603|consen 124 LNNVPHLVL 132 (331)
T ss_pred ccCCCeEEE
Confidence 7 6999884
No 301
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.92 E-value=16 Score=30.97 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=51.9
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcC-------CcCceEEEeccCCeEee
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQ-------YEIPVLARVLSDGTEEA 118 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg-------~~VPVl~~~~idG~~l~ 118 (141)
....++=|-..|-|-|...-++..++ |-....+...|-.+||---++-.++|+ ...|++. .|.+|+|..
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeL---S~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~i-lFq~gkE~~ 219 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAEL---SIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYI-LFQKGKEVS 219 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHH---HHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEE-EEccchhhh
Confidence 34556677778889999888887664 333445678999999998888888885 2489987 468999875
No 302
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=46.73 E-value=38 Score=25.39 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=36.0
Q ss_pred CCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-CHHHHHHcC---CcCceEEEeccCCeE
Q 032418 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-NPEWEKSYQ---YEIPVLARVLSDGTE 116 (141)
Q Consensus 57 ~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-d~el~~kyg---~~VPVl~~~~idG~~ 116 (141)
.|+.|-..+.+|..... =...++++.||-.- ..++.+..| +..||++. .+|..
T Consensus 23 ~Cp~c~~iEGlLa~~P~-----l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL--~~~~~ 79 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPD-----LRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVL--ADGAP 79 (112)
T ss_pred ECCchHHHHhHHhhChh-----hhhcccEEEeCCCCchHHHHHHhChhccCCCEEEe--CCCCC
Confidence 39999999999987532 11257777777754 345566555 46999983 66653
No 303
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=44.42 E-value=17 Score=26.16 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=23.0
Q ss_pred HHHHHcCC-cCceEEEeccCCeEeeCCCCCcccCHHHHHHHHHH
Q 032418 95 EWEKSYQY-EIPVLARVLSDGTEEALPRLSPRIGVELIQKKIAA 137 (141)
Q Consensus 95 el~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l~~ 137 (141)
++..++|. .+|.++ +||+.+. +..+.+++.+.|.+
T Consensus 127 ~~~~~~~i~~tPt~~---inG~~~~-----~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 127 QLARQLGITGTPTFF---INGKYVV-----GPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHT-SSSSEEE---ETTCEEE-----TTTSHHHHHHHHHH
T ss_pred HHHHHcCCccccEEE---ECCEEeC-----CCCCHHHHHHHHcC
Confidence 34556676 599998 8999762 23457777776653
No 304
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=42.90 E-value=16 Score=31.64 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=42.8
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC-----CHHHHHHcC--CcCceEEEeccCCeEe
Q 032418 49 KLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT-----NPEWEKSYQ--YEIPVLARVLSDGTEE 117 (141)
Q Consensus 49 ~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~-----d~el~~kyg--~~VPVl~~~~idG~~l 117 (141)
+.+||.-|.--.-++++-++.++ +++++.+||+- ..-|.-+.+ -.|||+. ||..+
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK----------~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~----~g~~I 87 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEK----------GIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLI----HGDNI 87 (325)
T ss_pred cceeeecCcccccceeeeehhhc----------ccccceeeccCccccccCchheecCCCCCCceEe----cCCee
Confidence 48899999999999999888876 89999999982 223555554 4699985 78765
No 305
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=22 Score=29.27 Aligned_cols=57 Identities=16% Similarity=0.330 Sum_probs=33.7
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECC--CC-HHHHHHc---C--CcCceEEEeccCCeEee
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDIT--TN-PEWEKSY---Q--YEIPVLARVLSDGTEEA 118 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId--~d-~el~~ky---g--~~VPVl~~~~idG~~l~ 118 (141)
.+.+.=|.++.|.|=.+.--.|+ +++|+.+-|+ .. .+.-.+| + ..||.++ +||..+.
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK------------~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~---i~g~tl~ 69 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALK------------GIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLV---IDGLTLT 69 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHc------------CCCcceeehhhhcchhhhhhHHhhcCchhhCCeEE---ECCEEee
Confidence 34455677899998655544443 4555555444 33 2222233 2 3699999 8998874
No 306
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=42.34 E-value=29 Score=23.00 Aligned_cols=45 Identities=24% Similarity=0.204 Sum_probs=30.5
Q ss_pred CCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEEEeccCCeEe
Q 032418 57 GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEE 117 (141)
Q Consensus 57 ~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~~~~idG~~l 117 (141)
..|+|-++..+|+-. +++|+.+ ...|+... =.-.+|+|. .||+.+
T Consensus 15 ~sp~clk~~~~Lr~~----------~~~~~v~-~~~n~~~s--p~gkLP~l~---~~~~~i 59 (73)
T cd03078 15 VDPECLAVLAYLKFA----------GAPLKVV-PSNNPWRS--PTGKLPALL---TSGTKI 59 (73)
T ss_pred CCHHHHHHHHHHHcC----------CCCEEEE-ecCCCCCC--CCCccCEEE---ECCEEe
Confidence 368999999999875 7888655 43443211 123599988 677765
No 307
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=41.04 E-value=1.1e+02 Score=23.50 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=34.5
Q ss_pred CCceeEEEECC-----CCHHHHHHcCC---cCceEEEeccCCe-EeeCCCCCcccCHHHHHHHHHH
Q 032418 81 HDVDLQVRDIT-----TNPEWEKSYQY---EIPVLARVLSDGT-EEALPRLSPRIGVELIQKKIAA 137 (141)
Q Consensus 81 ~~i~~eevDId-----~d~el~~kyg~---~VPVl~~~~idG~-~l~~~~~~~rl~~~~L~~~l~~ 137 (141)
.++=+-+|-|. +|.+|.++|+. ..|++.+...+.+ .+.++ .++.++.+.|+..+..
T Consensus 53 ~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p-~~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 53 DDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVRYP-FDGDVTADNLQRFVKS 117 (126)
T ss_dssp SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEEE--TCS-S-HHHHHHHHHH
T ss_pred CceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCccCC-ccCCccHHHHHHHHHh
Confidence 36777888887 47899999985 4899885432333 34442 3455778888777653
No 308
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=40.60 E-value=40 Score=28.99 Aligned_cols=54 Identities=24% Similarity=0.450 Sum_probs=37.7
Q ss_pred eEEEEeCC---CC----CchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEEEeccCCeEee
Q 032418 49 KLVLYSKP---GC----CLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEEA 118 (141)
Q Consensus 49 ~VtLYtkp---~C----~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~~~~idG~~l~ 118 (141)
.|.||.-| +| |+|-+++-+|+.. +++||.+|-.-- ...-+-++|-|. .||+++.
T Consensus 45 ~VYLyQF~R~~~~PnLSPfClKvEt~lR~~----------~IpYE~~~~~~~---~rSr~G~lPFIE---LNGe~ia 105 (281)
T KOG4244|consen 45 TVYLYQFPRTKTCPNLSPFCLKVETFLRAY----------DIPYEIVDCSLK---RRSRNGTLPFIE---LNGEHIA 105 (281)
T ss_pred eEEEEeccccCCCCCCChHHHHHHHHHHHh----------CCCceeccccce---eeccCCCcceEE---eCCeecc
Confidence 46676533 35 5899999999986 899998775321 111133699998 7999884
No 309
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=40.15 E-value=59 Score=25.08 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=45.3
Q ss_pred CCCCCCceEEEEeCCCCCch--HHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHH--cC--CcCceEEEeccCCe
Q 032418 42 SSSSSTRKLVLYSKPGCCLC--DGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS--YQ--YEIPVLARVLSDGT 115 (141)
Q Consensus 42 ~~~~~~~~VtLYtkp~C~lC--~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~k--yg--~~VPVl~~~~idG~ 115 (141)
..|.....|.+=+...|+.+ ++..+.|++.. +++..++.-|..-.+... .| ..-|++. +||+
T Consensus 70 ~~p~Gk~~I~VC~~~~C~~~G~~~ll~~l~~~L---------gi~~gett~Dg~ftL~~~~ClG~C~~aP~~~---in~~ 137 (156)
T PRK05988 70 THPPGRHVLKLCRAEACQAMGGDALAAHAKARL---------GIDFHQTTADGAVTLEPVYCLGLCACSPAAM---LDGE 137 (156)
T ss_pred CCCCCCEEEEEeCCchhhcCCHHHHHHHHHHHh---------CCCCCCcCCCCeEEEEeeeecCccCCCCeEE---ECCE
Confidence 34566777889999999987 66666666652 333322222211111111 12 4689998 7998
Q ss_pred EeeCCCCCcccCHHHHHHHHHHH
Q 032418 116 EEALPRLSPRIGVELIQKKIAAA 138 (141)
Q Consensus 116 ~l~~~~~~~rl~~~~L~~~l~~~ 138 (141)
.+ +. ++.+.+.+-+.++
T Consensus 138 ~~--~~----lt~~~~~~il~~~ 154 (156)
T PRK05988 138 VH--GR----LDPQRLDALLAEA 154 (156)
T ss_pred Ee--CC----CCHHHHHHHHHHh
Confidence 44 44 4566666655544
No 310
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=40.08 E-value=1.4e+02 Score=21.55 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=39.9
Q ss_pred CceeEEEECCCCH--HHHHHcCC-cCceEEEe-ccCCeEeeCCCCCcccCHHHHHHHHHHHhh
Q 032418 82 DVDLQVRDITTNP--EWEKSYQY-EIPVLARV-LSDGTEEALPRLSPRIGVELIQKKIAAALR 140 (141)
Q Consensus 82 ~i~~eevDId~d~--el~~kyg~-~VPVl~~~-~idG~~l~~~~~~~rl~~~~L~~~l~~~~~ 140 (141)
.+=+-..|+++.+ ++...++. +.|.+... ..+++--...++.+.++.+++...|.....
T Consensus 52 ~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 52 RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 4666778888654 46667776 59997632 115543234667788999999999887764
No 311
>PRK15000 peroxidase; Provisional
Probab=38.47 E-value=1.9e+02 Score=22.65 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=23.8
Q ss_pred CceEEEEeCC--CCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC
Q 032418 47 TRKLVLYSKP--GCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (141)
Q Consensus 47 ~~~VtLYtkp--~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~ 92 (141)
.+.+.||.-| +|+.|..-...|.+... .....++.+--+.+|+
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~---~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYE---EFQKRGVEVVGVSFDS 78 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHH---HHHHCCCEEEEEECCC
Confidence 3445544444 79999997766655421 0112355665566553
No 312
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=38.07 E-value=33 Score=28.82 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=21.5
Q ss_pred CCceEEEEeCCCCCchHHHHHHHHHH
Q 032418 46 STRKLVLYSKPGCCLCDGLKEKLQAA 71 (141)
Q Consensus 46 ~~~~VtLYtkp~C~lC~~Ak~~L~~~ 71 (141)
..+.|..-+..|||+|-..+..|--.
T Consensus 58 Gk~~v~~igw~gCP~~A~~sW~L~~A 83 (249)
T PF06053_consen 58 GKPEVIFIGWEGCPYCAAESWALYIA 83 (249)
T ss_pred CeeEEEEEecccCccchhhHHHHHHH
Confidence 45678888999999999999888654
No 313
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=35.62 E-value=55 Score=25.74 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=45.1
Q ss_pred CCCCCCceEEEEeCCCCCch--HHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHH--cC--CcCceEEEeccCCe
Q 032418 42 SSSSSTRKLVLYSKPGCCLC--DGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKS--YQ--YEIPVLARVLSDGT 115 (141)
Q Consensus 42 ~~~~~~~~VtLYtkp~C~lC--~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~k--yg--~~VPVl~~~~idG~ 115 (141)
..|.....|.+=....|+.+ ++..+.|++.. +++..+..-|..-.|... .| ..-|++. +||+
T Consensus 83 ~~P~Gk~~I~VC~g~aC~~~G~~~ll~~l~~~L---------gi~~gett~DG~ftL~~~~ClG~C~~AP~~~---Vn~~ 150 (169)
T PRK07571 83 LKPSGEHTCVVCTGTACYVKGSAAILEDLENEL---------GIKAGETTADGKLSLLTARCLGACGIAPAVV---FDGK 150 (169)
T ss_pred cCCCCCEEEEEcCChHHHHCCcHHHHHHHHHHh---------CCCCCCcCCCCeEEEEEecccCccCCCCeEE---ECCE
Confidence 34556677888888889986 66666666652 344333222211111111 13 4689998 8998
Q ss_pred EeeCCCCCcccCHHHHHHHHHHH
Q 032418 116 EEALPRLSPRIGVELIQKKIAAA 138 (141)
Q Consensus 116 ~l~~~~~~~rl~~~~L~~~l~~~ 138 (141)
.+ +. ++.+.+.+-|.+.
T Consensus 151 ~~--~~----lt~e~v~~il~~~ 167 (169)
T PRK07571 151 VA--GK----QTPESVLEKVQGW 167 (169)
T ss_pred Ee--CC----CCHHHHHHHHHHH
Confidence 44 44 4466666555543
No 314
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=34.95 E-value=1.7e+02 Score=20.84 Aligned_cols=74 Identities=14% Similarity=0.008 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcCCCC---CCCCceeEEEECCCCHHHHHHcCC---cCceEEEeccCCeEeeCCCCCcccCHHHHHHHH
Q 032418 62 DGLKEKLQAAFLLSGPD---SLHDVDLQVRDITTNPEWEKSYQY---EIPVLARVLSDGTEEALPRLSPRIGVELIQKKI 135 (141)
Q Consensus 62 ~~Ak~~L~~~~~~~~~~---~~~~i~~eevDId~d~el~~kyg~---~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l 135 (141)
+..+..+++.+. . ....+.|..+|.++.....+-+|. ..|.+.+...++. --|+..++.++.+.+.+.+
T Consensus 30 ~~~~~~~~~vAk----~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~-~Ky~~~~~~~t~~~i~~Fv 104 (111)
T cd03072 30 ESLKEFKQAVAR----QLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHM-YLFPDFEDVYVPGKLKQFV 104 (111)
T ss_pred HHHHHHHHHHHH----HHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhc-CcCCCCccccCHHHHHHHH
Confidence 456666666542 2 224699999999876656677775 3899884322220 1344355678888888888
Q ss_pred HHHhh
Q 032418 136 AAALR 140 (141)
Q Consensus 136 ~~~~~ 140 (141)
.+.+.
T Consensus 105 ~~~~~ 109 (111)
T cd03072 105 LDLHS 109 (111)
T ss_pred HHHhc
Confidence 77653
No 315
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=34.06 E-value=35 Score=24.79 Aligned_cols=22 Identities=14% Similarity=0.437 Sum_probs=18.4
Q ss_pred EECCCCHHHHHHcCCc-CceEEE
Q 032418 88 RDITTNPEWEKSYQYE-IPVLAR 109 (141)
Q Consensus 88 vDId~d~el~~kyg~~-VPVl~~ 109 (141)
.+|.-||.+.++|+.+ ||+++.
T Consensus 55 ~~v~IdP~~F~~y~I~~VPa~V~ 77 (113)
T PF09673_consen 55 PGVQIDPRLFRQYNITAVPAFVV 77 (113)
T ss_pred cceeEChhHHhhCCceEcCEEEE
Confidence 5666789999999985 999884
No 316
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=33.78 E-value=33 Score=26.99 Aligned_cols=26 Identities=15% Similarity=0.338 Sum_probs=21.8
Q ss_pred CceEEEEeCCCCCchHHHHHHHHHHh
Q 032418 47 TRKLVLYSKPGCCLCDGLKEKLQAAF 72 (141)
Q Consensus 47 ~~~VtLYtkp~C~lC~~Ak~~L~~~~ 72 (141)
..++..|+.+.|++|.++-+.++...
T Consensus 119 ~~~~~~f~~~~~~~~~~a~~~~~~~~ 144 (244)
T COG1651 119 VLREFPFLDPACPYCRRAAQAARCAA 144 (244)
T ss_pred EEEEeecCCCCcHHHHHHHHHHHHhc
Confidence 35678999999999999998887763
No 317
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=33.00 E-value=29 Score=26.67 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=23.2
Q ss_pred eEEEECCCCHHHHHHcCC-cCceEEEeccCCeEe
Q 032418 85 LQVRDITTNPEWEKSYQY-EIPVLARVLSDGTEE 117 (141)
Q Consensus 85 ~eevDId~d~el~~kyg~-~VPVl~~~~idG~~l 117 (141)
....+|+++.++.+++|. .+|.++ +.||+.+
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii--~~~G~~~ 184 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV--LADGRVV 184 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE--ECCCeEe
Confidence 334566677889999997 699987 3678865
No 318
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=32.55 E-value=71 Score=30.26 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCCCC--CCceeEEEECCC--CHHHHHHcCCc-CceEEEe
Q 032418 55 KPGCCLCDGLKEKLQAAFLLSGPDSL--HDVDLQVRDITT--NPEWEKSYQYE-IPVLARV 110 (141)
Q Consensus 55 kp~C~lC~~Ak~~L~~~~~~~~~~~~--~~i~~eevDId~--d~el~~kyg~~-VPVl~~~ 110 (141)
..||+.|....+..++.+. +... .-+.+..||..+ |..+-++++.+ -|.|...
T Consensus 66 ~swCGhCr~FAPtfk~~A~---dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf 123 (606)
T KOG1731|consen 66 NSWCGHCRAFAPTFKKFAK---DLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYF 123 (606)
T ss_pred HhhhhhhhhcchHHHHHHH---HHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeec
Confidence 4599999999999888743 1111 124667777764 67899999985 8998853
No 319
>PRK13189 peroxiredoxin; Provisional
Probab=30.97 E-value=2.8e+02 Score=22.19 Aligned_cols=20 Identities=10% Similarity=-0.102 Sum_probs=14.4
Q ss_pred EEeCCCCCchHHHHHHHHHH
Q 032418 52 LYSKPGCCLCDGLKEKLQAA 71 (141)
Q Consensus 52 LYtkp~C~lC~~Ak~~L~~~ 71 (141)
.|-..+|+.|..-...|.+.
T Consensus 42 f~pa~fcpvC~tEl~~l~~~ 61 (222)
T PRK13189 42 SHPADFTPVCTTEFVAFQKR 61 (222)
T ss_pred EeCCCCCCCCHHHHHHHHHH
Confidence 46789999999765555443
No 320
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=30.50 E-value=65 Score=23.49 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=17.0
Q ss_pred HHHHHcCC-cCceEEEeccCCeEeeCCC
Q 032418 95 EWEKSYQY-EIPVLARVLSDGTEEALPR 121 (141)
Q Consensus 95 el~~kyg~-~VPVl~~~~idG~~l~~~~ 121 (141)
++..++|. .+|.++ +||+.+..+.
T Consensus 134 ~~~~~~gi~gTPt~i---InG~~~~~~~ 158 (178)
T cd03019 134 KLAKKYKITGVPAFV---VNGKYVVNPS 158 (178)
T ss_pred HHHHHcCCCCCCeEE---ECCEEEEChh
Confidence 34456676 699998 7999765544
No 321
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=30.09 E-value=88 Score=26.32 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=42.9
Q ss_pred CCCCCCCCceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCH------HHHHHcCCcCceEE
Q 032418 40 SSSSSSSTRKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNP------EWEKSYQYEIPVLA 108 (141)
Q Consensus 40 ~~~~~~~~~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~------el~~kyg~~VPVl~ 108 (141)
.|.++.....|+-+=+..|.+|..-..-|+.+..-=++.+..+|.|-.||=-+.. +|.++....|||.-
T Consensus 20 pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyq 94 (238)
T PF04592_consen 20 PMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQ 94 (238)
T ss_pred HhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceec
Confidence 4677777777887888899999874444433210002245568999999865432 23344445688854
No 322
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=28.79 E-value=48 Score=24.93 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=20.0
Q ss_pred HHHcCC-cCceEEEeccCCeEeeCCCCCcccCHHHHHHHH
Q 032418 97 EKSYQY-EIPVLARVLSDGTEEALPRLSPRIGVELIQKKI 135 (141)
Q Consensus 97 ~~kyg~-~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l 135 (141)
..+.|. .+|.++ +||+... .+....+.+.+.|
T Consensus 168 a~~~gv~G~Pt~v---v~g~~~~----~G~~~~~~~~~~i 200 (201)
T cd03024 168 ARQLGISGVPFFV---FNGKYAV----SGAQPPEVFLQAL 200 (201)
T ss_pred HHHCCCCcCCEEE---ECCeEee----cCCCCHHHHHHHh
Confidence 344565 699998 7888653 3444466665554
No 323
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.02 E-value=73 Score=23.75 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=10.9
Q ss_pred CceeEEEECCCCH
Q 032418 82 DVDLQVRDITTNP 94 (141)
Q Consensus 82 ~i~~eevDId~d~ 94 (141)
.+.|+++||..+.
T Consensus 32 ki~fk~~di~~~e 44 (108)
T KOG4023|consen 32 KIGFKEIDITAYE 44 (108)
T ss_pred cCCcceeeccchh
Confidence 6999999998654
No 324
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=27.68 E-value=1.3e+02 Score=22.47 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=28.1
Q ss_pred EEEEeCCCCCchHHH-HHHHHHHhhcCCCCCCCCc-eeEEEECCCC---HHHHHHcCC--cCceEE
Q 032418 50 LVLYSKPGCCLCDGL-KEKLQAAFLLSGPDSLHDV-DLQVRDITTN---PEWEKSYQY--EIPVLA 108 (141)
Q Consensus 50 VtLYtkp~C~lC~~A-k~~L~~~~~~~~~~~~~~i-~~eevDId~d---~el~~kyg~--~VPVl~ 108 (141)
+..|-+.+||.|..- ..-+.+... + ....++ .+--+..+.. .++.++++. .+|.+-
T Consensus 34 l~fyP~~~tp~Ct~e~~~~~~~~~~--~-f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLs 96 (155)
T cd03013 34 IFGVPGAFTPTCSAQHLPGYVENAD--E-LKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLA 96 (155)
T ss_pred EEEeCCCCCCCCchhHHHHHHHhHH--H-HHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEE
Confidence 556667779999975 333333211 0 111244 3544555432 245566665 456543
No 325
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=27.32 E-value=97 Score=25.67 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=40.1
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCc-CceEEEeccCCeEeeCCCCCccc
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYE-IPVLARVLSDGTEEALPRLSPRI 126 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~-VPVl~~~~idG~~l~~~~~~~rl 126 (141)
..+++=+-++=.+=+.++++.+-.. .+. ...+.-||.+.++|+.+ ||+++. ..+. .|-.+.+.+
T Consensus 117 ~p~VlRG~~~nsfk~Ta~~v~~L~~--------~~~---~~gv~IDP~lF~~F~I~~VPafVv--~C~~--~yD~I~GNI 181 (212)
T PRK13730 117 IPATLRGMVNNDLKTTAEAVLSLVK--------DGA---TDGVQIDPTLFSQYGIRSVPALVV--FCSQ--GYDIIRGNL 181 (212)
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc--------cCC---CCceeECHHHHHhcCCccccEEEE--EcCC--CCCEEEecc
Confidence 3455666666555444444443220 011 12334489999999985 999883 3443 334444555
Q ss_pred CHHHHHHHHH
Q 032418 127 GVELIQKKIA 136 (141)
Q Consensus 127 ~~~~L~~~l~ 136 (141)
.-.+-.+.++
T Consensus 182 sl~~ALe~iA 191 (212)
T PRK13730 182 RVGQALEKVA 191 (212)
T ss_pred cHHHHHHHHH
Confidence 5555444443
No 326
>PF15616 TerY-C: TerY-C metal binding domain
Probab=25.50 E-value=27 Score=26.69 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=13.2
Q ss_pred EEEeCCCCCchHHHHHH
Q 032418 51 VLYSKPGCCLCDGLKEK 67 (141)
Q Consensus 51 tLYtkp~C~lC~~Ak~~ 67 (141)
.|.+.|+||+|-....+
T Consensus 73 eL~g~PgCP~CGn~~~f 89 (131)
T PF15616_consen 73 ELIGAPGCPHCGNQYAF 89 (131)
T ss_pred HhcCCCCCCCCcChhcE
Confidence 37899999999876533
No 327
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=24.73 E-value=1.6e+02 Score=22.23 Aligned_cols=24 Identities=21% Similarity=0.600 Sum_probs=19.1
Q ss_pred ceEEEEeC-CCCCchHHHHHHHHHH
Q 032418 48 RKLVLYSK-PGCCLCDGLKEKLQAA 71 (141)
Q Consensus 48 ~~VtLYtk-p~C~lC~~Ak~~L~~~ 71 (141)
-+|+|||. +.|+-|..+.+.+...
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~~ 121 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKKD 121 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHHH
Confidence 67999985 5699999877776664
No 328
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=24.47 E-value=94 Score=23.48 Aligned_cols=22 Identities=18% Similarity=0.662 Sum_probs=17.7
Q ss_pred EECCCCHHHHHHcCCc-CceEEE
Q 032418 88 RDITTNPEWEKSYQYE-IPVLAR 109 (141)
Q Consensus 88 vDId~d~el~~kyg~~-VPVl~~ 109 (141)
.++.=||.|.++|+.+ ||.++.
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~ 77 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVV 77 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEE
Confidence 4445589999999985 999884
No 329
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=22.28 E-value=46 Score=29.65 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=23.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhc
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLL 74 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~ 74 (141)
.+|.|.+.||||-|-.-...++..-.+
T Consensus 58 ~~IelisGPGCPVCVtp~~~ID~ai~L 84 (369)
T TIGR00075 58 ENLELVHGPGCPVCVTPMERIDEAIEL 84 (369)
T ss_pred CCcEEecCCCCCcEeCcHHHHHHHHHH
Confidence 579999999999999999888886543
No 330
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=21.96 E-value=46 Score=29.57 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=23.4
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhhc
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFLL 74 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~~ 74 (141)
++|.|-+.||||-|-.-...+++.-.+
T Consensus 52 ~~ielisGPGCPVCVtp~~~ID~ai~L 78 (364)
T PRK15062 52 ENIELIHGPGCPVCVTPMGRIDAAIEL 78 (364)
T ss_pred CCcEEecCCCCCcEeCcHHHHHHHHHH
Confidence 689999999999999999988886543
No 331
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.75 E-value=98 Score=25.70 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=25.0
Q ss_pred HHcCC-cCceEEEeccCCeEeeCCCCCcccCHHHHHHHHHHHhh
Q 032418 98 KSYQY-EIPVLARVLSDGTEEALPRLSPRIGVELIQKKIAAALR 140 (141)
Q Consensus 98 ~kyg~-~VPVl~~~~idG~~l~~~~~~~rl~~~~L~~~l~~~~~ 140 (141)
++.|. .||..+ .||+.. +.+.-..+.+...|.++++
T Consensus 178 ~e~gI~gVP~fv---~d~~~~----V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 178 QEMGIRGVPTFV---FDGKYA----VSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHCCCccCceEE---EcCcEe----ecCCCCHHHHHHHHHHHHh
Confidence 45566 599988 577765 4455567788888877764
No 332
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=21.36 E-value=46 Score=26.74 Aligned_cols=56 Identities=14% Similarity=0.007 Sum_probs=28.8
Q ss_pred EEEEeC-----CCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcCceEEEeccCCeEe
Q 032418 50 LVLYSK-----PGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEIPVLARVLSDGTEE 117 (141)
Q Consensus 50 VtLYtk-----p~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~VPVl~~~~idG~~l 117 (141)
-++|-+ =+|++|+....+=.. .+..+....+++--+..+..+....-|. +..|+++
T Consensus 23 ~~vFVR~~GC~l~C~~Cdt~~t~~~~----------~~~~~~~~~~~~I~~~i~~~~~~~~~V~--lTGGEP~ 83 (212)
T COG0602 23 PSVFVRFAGCNLRCPGCDTKYTWDFN----------YGKPGTPMSADEILADIKSLGYKARGVS--LTGGEPL 83 (212)
T ss_pred eeEEEEcCCCCCCCCCCCChhhhccc----------ccCCCCccCHHHHHHHHHhcCCCcceEE--EeCCcCC
Confidence 456666 459999977653111 1344555555433333344444444322 2678764
No 333
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=21.14 E-value=1.5e+02 Score=22.86 Aligned_cols=35 Identities=3% Similarity=-0.041 Sum_probs=20.2
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCCCCCCceeEEEECCC
Q 032418 55 KPGCCLCDGLKEKLQAAFLLSGPDSLHDVDLQVRDITT 92 (141)
Q Consensus 55 kp~C~lC~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~ 92 (141)
..+|+.|......|.+... .....++++.-|+++.
T Consensus 46 ~~~~~~C~~e~~~l~~~~~---~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 46 LDFTFVCPTEIIQFSDSVK---RFNELNCEVLACSMDS 80 (199)
T ss_pred CCCCCcCHHHHHHHHHHHH---HHHHcCCEEEEEeCCC
Confidence 4679999876665554321 0122366666666663
No 334
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=20.74 E-value=3.3e+02 Score=19.55 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCceeEEEECCCCHHHHHHcCCcC-------------ceEEEeccCCeEee
Q 032418 62 DGLKEKLQAAFLLSGPDSLHDVDLQVRDITTNPEWEKSYQYEI-------------PVLARVLSDGTEEA 118 (141)
Q Consensus 62 ~~Ak~~L~~~~~~~~~~~~~~i~~eevDId~d~el~~kyg~~V-------------PVl~~~~idG~~l~ 118 (141)
..+++++++. +++|..+. |.+.++.+.||... |..+.+..||+...
T Consensus 76 ~~~~~~~~~~----------~~~~~~l~-D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~ 134 (154)
T PRK09437 76 EKLSRFAEKE----------LLNFTLLS-DEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEH 134 (154)
T ss_pred HHHHHHHHHh----------CCCCeEEE-CCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEE
Confidence 5666666654 56666554 55667888887432 55443446787543
No 335
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=20.45 E-value=58 Score=28.87 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=18.3
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHhh
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAFL 73 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~~ 73 (141)
.+|.|-+.||||-|-.-...++....
T Consensus 47 ~~I~lisGPGCPVCVtp~~~ID~ai~ 72 (355)
T PF01924_consen 47 ENIELISGPGCPVCVTPQGDIDAAIE 72 (355)
T ss_dssp TTEEEEE-S--TTTTS-HHHHHHHHH
T ss_pred CCcEEecCCCCccEECcHHHHHHHHH
Confidence 57999999999999988888877543
No 336
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.42 E-value=54 Score=29.13 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=20.6
Q ss_pred ceEEEEeCCCCCchHHHHHHHHHHh
Q 032418 48 RKLVLYSKPGCCLCDGLKEKLQAAF 72 (141)
Q Consensus 48 ~~VtLYtkp~C~lC~~Ak~~L~~~~ 72 (141)
.+|++.+.||||-|-.-...++..-
T Consensus 54 eNi~~i~GPGCPVCVtp~~~id~ai 78 (364)
T COG0409 54 ENVEFIHGPGCPVCVTPMGRIDTAI 78 (364)
T ss_pred cceEEecCCCCCeEeeEHHHHHHHH
Confidence 5799999999999988777776643
No 337
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.21 E-value=49 Score=28.82 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=10.0
Q ss_pred EeCCCCCchHHHHH
Q 032418 53 YSKPGCCLCDGLKE 66 (141)
Q Consensus 53 Ytkp~C~lC~~Ak~ 66 (141)
=-|+.||||++--+
T Consensus 268 GKkqtCPYCKekVd 281 (328)
T KOG1734|consen 268 GKKQTCPYCKEKVD 281 (328)
T ss_pred cCCCCCchHHHHhh
Confidence 34688999986443
Done!