Query 032419
Match_columns 141
No_of_seqs 199 out of 1033
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 22:45:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 2E-26 6.9E-31 157.6 12.7 89 26-115 6-94 (102)
2 2eqz_A High mobility group pro 99.9 1.8E-25 6.1E-30 148.3 11.2 79 28-107 6-86 (86)
3 1k99_A Upstream binding factor 99.9 5.6E-26 1.9E-30 154.7 8.8 83 29-112 2-84 (99)
4 1hme_A High mobility group pro 99.9 2E-25 7E-30 144.9 7.5 76 32-108 1-76 (77)
5 1cg7_A Protein (NON histone pr 99.9 6.5E-26 2.2E-30 152.6 5.3 83 27-110 10-92 (93)
6 2crj_A SWI/SNF-related matrix- 99.9 1.1E-24 3.7E-29 146.2 10.4 79 32-111 2-80 (92)
7 2lhj_A High mobility group pro 99.9 9.6E-26 3.3E-30 152.8 4.7 83 27-110 12-96 (97)
8 2e6o_A HMG box-containing prot 99.9 7.1E-25 2.4E-29 145.8 8.5 77 30-107 10-86 (87)
9 2cs1_A PMS1 protein homolog 1; 99.9 1.1E-24 3.7E-29 146.3 9.2 80 33-113 3-82 (92)
10 1wgf_A Upstream binding factor 99.9 1.3E-25 4.5E-30 150.2 4.6 80 25-105 8-87 (90)
11 3nm9_A HMG-D, high mobility gr 99.9 5.1E-24 1.8E-28 137.1 9.6 72 35-109 1-72 (73)
12 1aab_A High mobility group pro 99.9 7E-25 2.4E-29 144.4 4.9 78 32-110 2-81 (83)
13 1hry_A Human SRY; DNA, DNA-bin 99.9 1.7E-24 5.8E-29 140.2 6.6 74 34-108 1-74 (76)
14 1wxl_A Single-strand recogniti 99.9 8.6E-24 2.9E-28 136.1 7.5 72 35-109 1-72 (73)
15 1j46_A SRY, sex-determining re 99.9 1.9E-23 6.5E-28 138.2 8.7 76 34-110 1-76 (85)
16 1ckt_A High mobility group 1 p 99.9 2.1E-23 7.1E-28 133.3 7.8 69 37-106 1-71 (71)
17 2gzk_A Sex-determining region 99.9 6.1E-23 2.1E-27 149.7 10.7 79 29-108 80-158 (159)
18 4a3n_A Transcription factor SO 99.9 1.3E-23 4.6E-28 134.0 6.2 71 36-107 1-71 (71)
19 1wz6_A HMG-box transcription f 99.9 7E-24 2.4E-28 139.3 4.9 76 33-109 3-78 (82)
20 1v64_A Nucleolar transcription 99.9 6.9E-23 2.3E-27 141.5 9.7 80 28-112 7-87 (108)
21 1gt0_D Transcription factor SO 99.9 4.6E-23 1.6E-27 134.7 8.0 74 36-110 1-74 (80)
22 4euw_A Transcription factor SO 99.9 5.1E-23 1.7E-27 141.6 8.5 79 30-109 22-100 (106)
23 3f27_D Transcription factor SO 99.9 3.7E-23 1.3E-27 135.9 7.4 75 34-109 3-77 (83)
24 2lef_A LEF-1 HMG, protein (lym 99.9 1E-22 3.4E-27 134.9 8.8 75 36-111 1-75 (86)
25 3u2b_C Transcription factor SO 99.9 6.6E-23 2.2E-27 133.5 7.0 73 36-109 1-73 (79)
26 2yrq_A High mobility group pro 99.9 2.7E-22 9.2E-27 148.2 10.7 80 29-109 93-172 (173)
27 1i11_A Transcription factor SO 99.9 7.7E-23 2.6E-27 134.0 6.5 74 35-109 2-75 (81)
28 3fgh_A Transcription factor A, 99.9 1.6E-22 5.6E-27 128.0 6.7 66 36-106 1-66 (67)
29 1l8y_A Upstream binding factor 99.9 5.4E-22 1.8E-26 132.9 9.1 75 36-112 3-77 (91)
30 1v63_A Nucleolar transcription 99.9 2E-21 7E-26 132.6 10.4 81 33-116 4-84 (101)
31 2yrq_A High mobility group pro 99.9 2.2E-21 7.4E-26 143.4 10.1 83 29-111 7-90 (173)
32 2d7l_A WD repeat and HMG-box D 99.8 2.2E-21 7.5E-26 127.6 6.6 61 34-95 2-63 (81)
33 3tmm_A Transcription factor A, 99.8 1.2E-20 4.2E-25 146.1 8.3 81 31-112 35-115 (238)
34 3tq6_A Transcription factor A, 99.8 2.7E-20 9.3E-25 142.1 9.3 78 34-112 6-83 (214)
35 2yuk_A Myeloid/lymphoid or mix 99.8 1.3E-21 4.4E-26 130.9 -0.0 69 29-102 14-84 (90)
36 2cto_A Novel protein; high mob 99.8 2.2E-20 7.7E-25 125.7 4.4 70 32-104 5-77 (93)
37 3tq6_A Transcription factor A, 99.8 4.7E-21 1.6E-25 146.3 0.6 80 29-113 106-185 (214)
38 3tmm_A Transcription factor A, 99.8 7.4E-21 2.5E-25 147.3 -0.0 80 29-113 138-217 (238)
39 2gzk_A Sex-determining region 99.7 2.4E-18 8.1E-23 125.3 7.8 74 35-109 2-75 (159)
40 2qgu_A Probable signal peptide 75.9 2.6 9E-05 31.1 3.8 46 64-109 72-119 (211)
41 2yua_A Williams-beuren syndrom 32.7 65 0.0022 20.2 4.2 37 50-86 36-76 (99)
42 3o39_A Periplasmic protein rel 32.3 56 0.0019 21.5 3.9 26 69-94 80-105 (108)
43 3itf_A Periplasmic adaptor pro 27.6 82 0.0028 21.8 4.2 31 69-99 108-138 (145)
44 1j1d_B Troponin T, TNT; THIN f 26.6 1.4E+02 0.0047 19.6 5.8 51 47-100 28-78 (106)
45 3mhp_C TIC62_peptide, ferredox 24.8 8.8 0.0003 19.0 -0.9 11 38-48 2-12 (26)
46 2o37_A Protein SIS1; HSP40, J- 23.3 1.1E+02 0.0037 18.9 3.9 37 50-86 27-64 (92)
47 3ygs_P Procaspase 9; apoptosis 22.0 58 0.002 20.6 2.4 17 37-53 63-79 (97)
48 2lkw_A Membrane fusion protein 22.0 23 0.0008 17.0 0.3 11 36-46 9-19 (26)
49 2och_A Hypothetical protein DN 20.0 93 0.0032 18.2 2.9 40 50-89 27-68 (73)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=2e-26 Score=157.56 Aligned_cols=89 Identities=28% Similarity=0.498 Sum_probs=83.3
Q ss_pred ccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHH
Q 032419 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (141)
Q Consensus 26 kk~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~ 105 (141)
.+++++.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++.+|..+|++
T Consensus 6 ~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 84 (102)
T 2co9_A 6 SGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPN-ATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAA 84 (102)
T ss_dssp CCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCC
Q 032419 106 YNRRQAEGTK 115 (141)
Q Consensus 106 y~~~~~~~~~ 115 (141)
|...+.....
T Consensus 85 Y~~~~~~~~~ 94 (102)
T 2co9_A 85 YRASLVSKSY 94 (102)
T ss_dssp HHHHHTSSCC
T ss_pred HHhhcccccc
Confidence 9999887654
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=148.30 Aligned_cols=79 Identities=39% Similarity=0.671 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHH
Q 032419 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKN 105 (141)
Q Consensus 28 ~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~ 105 (141)
+++..+||++||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|+.|++++|++|.++|..++.+|..+|..
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPE-VPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTT-SCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999 64 7999999999999999999999999999999999999999
Q ss_pred HH
Q 032419 106 YN 107 (141)
Q Consensus 106 y~ 107 (141)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 94
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.93 E-value=5.6e-26 Score=154.68 Aligned_cols=83 Identities=29% Similarity=0.558 Sum_probs=79.7
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 032419 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (141)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (141)
+++.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++||+++|++|.++|..++.+|..+|..|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hCCC
Q 032419 109 RQAE 112 (141)
Q Consensus 109 ~~~~ 112 (141)
..+.
T Consensus 81 ~~P~ 84 (99)
T 1k99_A 81 DHPD 84 (99)
T ss_dssp CCCC
T ss_pred HCCC
Confidence 8764
No 4
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.92 E-value=2e-25 Score=144.86 Aligned_cols=76 Identities=49% Similarity=0.819 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 032419 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (141)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (141)
++||++|+||+|||||||+++|..|...||+ +++.+|+++||.+|+.||+++|++|.++|..++.+|..+|+.|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999 999999999999999999999999999999999999999999974
No 5
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.92 E-value=6.5e-26 Score=152.59 Aligned_cols=83 Identities=39% Similarity=0.687 Sum_probs=78.8
Q ss_pred cCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHH
Q 032419 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (141)
Q Consensus 27 k~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y 106 (141)
++++..+||++|+||+|||||||+++|..|..+||+ +++.+|+++||++|++||+++|++|.++|..++.+|..+|..|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTT-SCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHhC
Q 032419 107 NRRQ 110 (141)
Q Consensus 107 ~~~~ 110 (141)
..+.
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 9864
No 6
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.92 E-value=1.1e-24 Score=146.25 Aligned_cols=79 Identities=30% Similarity=0.594 Sum_probs=75.7
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHhCC
Q 032419 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (141)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~~~ 111 (141)
.+||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++.+|..+|+.|.....
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~ 80 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEA 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 4799999999999999999999999999999 999999999999999999999999999999999999999999987543
No 7
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.92 E-value=9.6e-26 Score=152.77 Aligned_cols=83 Identities=36% Similarity=0.711 Sum_probs=78.4
Q ss_pred cCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHH
Q 032419 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (141)
Q Consensus 27 k~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~ 104 (141)
++++..+||++|+||+|||||||+++|..|..+||+ ++ +.+|+++||++|+.|++++|++|.++|..++.+|..+|.
T Consensus 12 ~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 90 (97)
T 2lhj_A 12 RPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPE-IAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKA 90 (97)
T ss_dssp CTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTT-STTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999 88 999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 032419 105 NYNRRQ 110 (141)
Q Consensus 105 ~y~~~~ 110 (141)
.|..+.
T Consensus 91 ~y~~~~ 96 (97)
T 2lhj_A 91 EYAQRK 96 (97)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 998753
No 8
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=7.1e-25 Score=145.77 Aligned_cols=77 Identities=29% Similarity=0.486 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHH
Q 032419 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (141)
Q Consensus 30 k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~ 107 (141)
+..+||++|+||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++++|++|.++|..++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 567899999999999999999999999999999 99999999999999999999999999999999999999999885
No 9
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=146.25 Aligned_cols=80 Identities=29% Similarity=0.425 Sum_probs=76.9
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 032419 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112 (141)
Q Consensus 33 ~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~~~~ 112 (141)
.+|++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++.+|..+|..|..++..
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPK-TSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 578999999999999999999999999999 9999999999999999999999999999999999999999999998765
Q ss_pred C
Q 032419 113 G 113 (141)
Q Consensus 113 ~ 113 (141)
.
T Consensus 82 ~ 82 (92)
T 2cs1_A 82 M 82 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=1.3e-25 Score=150.23 Aligned_cols=80 Identities=30% Similarity=0.470 Sum_probs=73.6
Q ss_pred cccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHH
Q 032419 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (141)
Q Consensus 25 ~kk~~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~ 104 (141)
+++++++.+||++|+||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++.+|..+|.
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677899999999999999999999999999999 99999999999999999999999999999999999987764
Q ss_pred H
Q 032419 105 N 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 87 ~ 87 (90)
T 1wgf_A 87 P 87 (90)
T ss_dssp S
T ss_pred H
Confidence 3
No 11
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.91 E-value=5.1e-24 Score=137.15 Aligned_cols=72 Identities=38% Similarity=0.733 Sum_probs=69.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 032419 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (141)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (141)
.++||||+|||||||+++|..|+.+||+ +++.+|+++||++|++|++ |++|.++|..++++|..+|++|+.+
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPG-IKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999 9999999999999999998 9999999999999999999999874
No 12
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.90 E-value=7e-25 Score=144.38 Aligned_cols=78 Identities=35% Similarity=0.618 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 032419 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (141)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (141)
++||++||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|+.|++++|++|.++|..++.+|..+|..|...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTT-TCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999999999999 65 59999999999999999999999999999999999999999765
Q ss_pred C
Q 032419 110 Q 110 (141)
Q Consensus 110 ~ 110 (141)
.
T Consensus 81 ~ 81 (83)
T 1aab_A 81 K 81 (83)
T ss_dssp S
T ss_pred C
Confidence 3
No 13
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.90 E-value=1.7e-24 Score=140.17 Aligned_cols=74 Identities=27% Similarity=0.505 Sum_probs=70.1
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 032419 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (141)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (141)
||++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++.+|..++++|+-
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSC-CSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 68999999999999999999999999999 899999999999999999999999999999999999999999864
No 14
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.90 E-value=8.6e-24 Score=136.08 Aligned_cols=72 Identities=35% Similarity=0.714 Sum_probs=69.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 032419 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (141)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (141)
|++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.| ++|++|.++|..++.+|..+|..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPG-IKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7899999999999999999999999999 99999999999999999 889999999999999999999999753
No 15
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.89 E-value=1.9e-23 Score=138.21 Aligned_cols=76 Identities=28% Similarity=0.511 Sum_probs=72.9
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHhC
Q 032419 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (141)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~~ 110 (141)
.|++|+||+|||||||+++|..|..+||+ +++.+|+++||++|++||+++|++|.++|..++.+|..++++|....
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 76 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 47899999999999999999999999999 99999999999999999999999999999999999999999998654
No 16
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.89 E-value=2.1e-23 Score=133.28 Aligned_cols=69 Identities=36% Similarity=0.667 Sum_probs=66.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHH
Q 032419 37 KPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (141)
Q Consensus 37 ~PKrP~say~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y 106 (141)
+||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|++|++++|++|.++|..++.+|..+|..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTT-CCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999 64 59999999999999999999999999999999999999877
No 17
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.89 E-value=6.1e-23 Score=149.68 Aligned_cols=79 Identities=48% Similarity=0.795 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 032419 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (141)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (141)
+++.+||++||||+|||||||+++|..|..+||+ +++++|+++||++|++|++++|++|.++|..++.+|..+|.+|+.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999999 999999999999999999999999999999999999999999985
No 18
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.89 E-value=1.3e-23 Score=133.97 Aligned_cols=71 Identities=31% Similarity=0.597 Sum_probs=63.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHH
Q 032419 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (141)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~ 107 (141)
++||||+|||||||+++|..|..+||+ +++.+|+++||++|+.||+++|++|.++|..++.+|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 579999999999999999999999999 99999999999999999999999999999999999999999885
No 19
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.89 E-value=7e-24 Score=139.25 Aligned_cols=76 Identities=21% Similarity=0.418 Sum_probs=73.1
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 032419 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (141)
Q Consensus 33 ~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (141)
.++++|+||+|||||||+++|..|+.+||+ +++.+|+++||++|+.||+++|++|.++|..++.+|..+|++|+..
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 578999999999999999999999999999 9999999999999999999999999999999999999999999764
No 20
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=6.9e-23 Score=141.47 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=74.6
Q ss_pred CCCCCCCCCCC-CCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHH
Q 032419 28 SGKAAKDPNKP-KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (141)
Q Consensus 28 ~~k~~~dp~~P-KrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y 106 (141)
+.++.+||++| |||+|||||||+++|..|+ + +++.+|+++||++|+.|++++|++|.++|..++.+|..+|..|
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~-~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y 81 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----D-VPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRF 81 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----T-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667899999 9999999999999999886 5 8999999999999999999999999999999999999999999
Q ss_pred HHhCCC
Q 032419 107 NRRQAE 112 (141)
Q Consensus 107 ~~~~~~ 112 (141)
...+.+
T Consensus 82 ~~~~~~ 87 (108)
T 1v64_A 82 LESLPE 87 (108)
T ss_dssp HHHSCH
T ss_pred HhhCCH
Confidence 998864
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.88 E-value=4.6e-23 Score=134.68 Aligned_cols=74 Identities=28% Similarity=0.565 Sum_probs=70.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHhC
Q 032419 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (141)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~~ 110 (141)
++|+||+|||||||+++|..|...||+ +++.+|+++||++|+.||+++|++|.++|..++.+|..+|++|....
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 74 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 479999999999999999999999999 99999999999999999999999999999999999999999997643
No 22
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.88 E-value=5.1e-23 Score=141.59 Aligned_cols=79 Identities=29% Similarity=0.563 Sum_probs=70.7
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 032419 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (141)
Q Consensus 30 k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (141)
...+++++||||+|||||||+++|..|+.+||+ +++.+|+++||++|+.|++++|++|.++|..++.+|..+|++|+..
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPH-LHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 346788999999999999999999999999999 9999999999999999999999999999999999999999999764
No 23
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.88 E-value=3.7e-23 Score=135.90 Aligned_cols=75 Identities=31% Similarity=0.572 Sum_probs=69.1
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 032419 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (141)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (141)
.+++|+||+|||||||+++|..|..+||+ +++.+|+++||++|+.|++++|++|.++|..++.+|..+|++|+-.
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 77 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYR 77 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 46789999999999999999999999999 9999999999999999999999999999999999999999999754
No 24
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=1e-22 Score=134.92 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=71.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHhCC
Q 032419 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 111 (141)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~~~ 111 (141)
+.|+||+|||||||+++|..|..+||+ +++.+|+++||++|++||+++|++|.++|..++.+|..+|++|...-.
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~ 75 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDN 75 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCC
Confidence 479999999999999999999999999 899999999999999999999999999999999999999999986543
No 25
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=6.6e-23 Score=133.46 Aligned_cols=73 Identities=29% Similarity=0.559 Sum_probs=70.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 032419 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (141)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (141)
++||||+|||||||+++|..|..+||+ +++.+|+++||++|+.|++++|++|.++|..++++|..++++|+-.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~ 73 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPD-MHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYR 73 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 579999999999999999999999999 9999999999999999999999999999999999999999999753
No 26
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=148.24 Aligned_cols=80 Identities=48% Similarity=0.796 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 032419 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (141)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (141)
+++.+||++|+||+|||||||+++|..|..+||+ +++.+|+++||++|++|++++|++|.++|..++.+|..+|++|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556799999999999999999999999999999 999999999999999999999999999999999999999999986
Q ss_pred h
Q 032419 109 R 109 (141)
Q Consensus 109 ~ 109 (141)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 4
No 27
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=7.7e-23 Score=133.98 Aligned_cols=74 Identities=23% Similarity=0.473 Sum_probs=68.8
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 032419 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (141)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (141)
+++|+||+|||||||+++|..|..+||+ +++.+|+++||++|+.|++++|++|.++|..++.+|..++++|.-.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 4789999999999999999999999999 9999999999999999999999999999999999999999999764
No 28
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.87 E-value=1.6e-22 Score=127.99 Aligned_cols=66 Identities=35% Similarity=0.633 Sum_probs=62.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHH
Q 032419 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNY 106 (141)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y 106 (141)
|+||||+|||+|||+++|..++..|| .+|+++||++|+.||+++|++|.++|..++.+|..+|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999976554 5999999999999999999999999999999999999998
No 29
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.87 E-value=5.4e-22 Score=132.91 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=72.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 032419 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112 (141)
Q Consensus 36 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~~~~ 112 (141)
++|+||+|||+||+++.|..++..+|+ ++++|++.||++|+.|++++|++|+++|..++.+|..+|..|+.+...
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 689999999999999999999999998 789999999999999999999999999999999999999999987765
No 30
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=2e-21 Score=132.56 Aligned_cols=81 Identities=15% Similarity=0.297 Sum_probs=71.4
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 032419 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112 (141)
Q Consensus 33 ~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~~~~ 112 (141)
....+||||+|||||||++++. ...+++ +++.+|+++||++|+.|++++|++|.++|..++.+|..+|..|...+.+
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~-~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNH-LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 3457999999999999999964 234555 7899999999999999999999999999999999999999999999986
Q ss_pred CCCC
Q 032419 113 GTKP 116 (141)
Q Consensus 113 ~~~~ 116 (141)
....
T Consensus 81 ~~~~ 84 (101)
T 1v63_A 81 QDRA 84 (101)
T ss_dssp THHH
T ss_pred HHHH
Confidence 5543
No 31
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-21 Score=143.37 Aligned_cols=83 Identities=33% Similarity=0.603 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHH
Q 032419 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYN 107 (141)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~-~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~ 107 (141)
+...+||++|+||+|||+|||+++|..|+.+||+. +++.+|+++||++|+.|++++|++|.++|..++.+|..+|..|.
T Consensus 7 k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 86 (173)
T 2yrq_A 7 GMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 86 (173)
T ss_dssp SSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45678999999999999999999999999999994 38999999999999999999999999999999999999999998
Q ss_pred HhCC
Q 032419 108 RRQA 111 (141)
Q Consensus 108 ~~~~ 111 (141)
....
T Consensus 87 ~~~~ 90 (173)
T 2yrq_A 87 PPKG 90 (173)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 7544
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-21 Score=127.58 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=59.0
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCChHhhHhHHHHHHHH
Q 032419 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADKAPYVAKAEKR 95 (141)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~-~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~ 95 (141)
++++||||+|||||||+++|..|+.+||+ ++ +.+|+++||++|+.|++++|++|.++|..+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~-~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPD-FSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTT-CCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999 87 999999999999999999999999999887
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=146.09 Aligned_cols=81 Identities=15% Similarity=0.370 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHhC
Q 032419 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQ 110 (141)
Q Consensus 31 ~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~~ 110 (141)
...+|++||||+|||+|||+++|..|+.+||+ +++.+|+++||++|+.|++++|.+|.++|..++.+|..+|..|...+
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35689999999999999999999999999999 89999999999999999999999999999999999999999999887
Q ss_pred CC
Q 032419 111 AE 112 (141)
Q Consensus 111 ~~ 112 (141)
++
T Consensus 114 ~p 115 (238)
T 3tmm_A 114 TP 115 (238)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 34
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.82 E-value=2.7e-20 Score=142.11 Aligned_cols=78 Identities=15% Similarity=0.383 Sum_probs=74.8
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 032419 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAE 112 (141)
Q Consensus 34 dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~~~~ 112 (141)
.|++||||+|||+|||+++|..|+.+||+ +++++|+++||++|+.||+++|.+|.++|..++.+|..+|..|...+++
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp 83 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 83 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCH
Confidence 36899999999999999999999999999 8999999999999999999999999999999999999999999987764
No 35
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-21 Score=130.94 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHH
Q 032419 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKD 102 (141)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~--~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e 102 (141)
.+..+||++||||+|||||||+++|..|+.+||+ ++ +++|+ ++|+.|++++|++|+++|..++..|...
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~-~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPD-WTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCS-HHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcC-ccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3455699999999999999999999999999999 88 88887 9999999999999999999999999753
No 36
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-20 Score=125.70 Aligned_cols=70 Identities=21% Similarity=0.339 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHhcCCChHhhHhHHHHHHHHHHHHHHHHH
Q 032419 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG---GEKWKSMSEADKAPYVAKAEKRKVEYEKDMK 104 (141)
Q Consensus 32 ~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l---~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~ 104 (141)
..++++||||+|||||||+++|..|+.+ + +++.+|+++| |++|+.|++++|++|+++|..++..|..++.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~-~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--G-LPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--T-CCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4578899999999999999999999988 5 7889999999 9999999999999999999999999988763
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.80 E-value=4.7e-21 Score=146.34 Aligned_cols=80 Identities=30% Similarity=0.467 Sum_probs=72.5
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 032419 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (141)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (141)
++..+||++||||+|||||||+++|..|...+ +.+|+++||++|++|++++|++|.++|..++.+|..+|.+|..
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSS-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578999999999999999999998886544 4599999999999999999999999999999999999999999
Q ss_pred hCCCC
Q 032419 109 RQAEG 113 (141)
Q Consensus 109 ~~~~~ 113 (141)
++...
T Consensus 181 ~~~~~ 185 (214)
T 3tq6_A 181 QMIEV 185 (214)
T ss_dssp HHHHT
T ss_pred hCccc
Confidence 98543
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.79 E-value=7.4e-21 Score=147.32 Aligned_cols=80 Identities=31% Similarity=0.506 Sum_probs=72.6
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 032419 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNR 108 (141)
Q Consensus 29 ~k~~~dp~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~ 108 (141)
++..+||++||||+|||||||+++|..|...|| .+|+++||++|++|++++|++|.++|..++.+|..+|.+|..
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999999988865554 499999999999999999999999999999999999999999
Q ss_pred hCCCC
Q 032419 109 RQAEG 113 (141)
Q Consensus 109 ~~~~~ 113 (141)
++...
T Consensus 213 k~~~~ 217 (238)
T 3tmm_A 213 QMIEV 217 (238)
T ss_dssp HHHHT
T ss_pred hCccc
Confidence 98543
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.75 E-value=2.4e-18 Score=125.27 Aligned_cols=74 Identities=28% Similarity=0.539 Sum_probs=71.3
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 032419 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 109 (141)
Q Consensus 35 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~~e~~~y~~~ 109 (141)
|++|+||+||||||+.+.|..|..+||+ +++.+|+++||++|+.||+++|++|.++|..++.+|..+|..|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 6789999999999999999999999999 9999999999999999999999999999999999999999999754
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=75.93 E-value=2.6 Score=31.13 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=36.6
Q ss_pred CCHHHHHHH-HHHHhcCCChHhhHhHHHHHHHH-HHHHHHHHHHHHHh
Q 032419 64 KSVAAVGKA-GGEKWKSMSEADKAPYVAKAEKR-KVEYEKDMKNYNRR 109 (141)
Q Consensus 64 ~~~~ei~k~-l~~~Wk~Ls~~eK~~Y~~~a~~~-k~~y~~e~~~y~~~ 109 (141)
..+..|++. ||..|+.+++++++.|.+..... ..-|-..+..|...
T Consensus 72 ~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 72 ADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp BCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred cCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 455555554 68999999999999999988775 56788889988754
No 41
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.71 E-value=65 Score=20.24 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHhcCCChHhhH
Q 032419 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEADKA 86 (141)
Q Consensus 50 ~e~r~~~~~~~p~~~~----~~ei~k~l~~~Wk~Ls~~eK~ 86 (141)
+..|..++.-||+... ..+....|.+.|..|++..+.
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R 76 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 3455666777888322 367888999999999876543
No 42
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=32.28 E-value=56 Score=21.46 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCChHhhHhHHHHHHH
Q 032419 69 VGKAGGEKWKSMSEADKAPYVAKAEK 94 (141)
Q Consensus 69 i~k~l~~~Wk~Ls~~eK~~Y~~~a~~ 94 (141)
.+++-..++..|+|++|..|.+..++
T Consensus 80 ~~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 80 HMETQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45556789999999999999986654
No 43
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=27.60 E-value=82 Score=21.78 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCChHhhHhHHHHHHHHHHHH
Q 032419 69 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEY 99 (141)
Q Consensus 69 i~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y 99 (141)
.++.-.+++..|++++|..|.+...+....+
T Consensus 108 r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~ 138 (145)
T 3itf_A 108 MAKVRNQMYRLLTPEQQAVLNEKHQQRMEQL 138 (145)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 3455568899999999999998766654443
No 44
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=26.59 E-value=1.4e+02 Score=19.59 Aligned_cols=51 Identities=12% Similarity=0.251 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCChHhhHhHHHHHHHHHHHHH
Q 032419 47 VFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYE 100 (141)
Q Consensus 47 lF~~e~r~~~~~~~p~~~~~~ei~k~l~~~Wk~Ls~~eK~~Y~~~a~~~k~~y~ 100 (141)
-|+.+++..+ ..++ ++..++...|-+.|..+..-+=..|.-.+...+..|.
T Consensus 28 kiLaER~kpL--~id~-l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yE 78 (106)
T 1j1d_B 28 KILAERRKVL--AIDH-LNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYE 78 (106)
T ss_dssp HHHHHHHHHH--HHTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC--CCCC-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHH
Confidence 3566666555 2344 7888999999999999887777789988888777774
No 45
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=24.83 E-value=8.8 Score=18.96 Aligned_cols=11 Identities=18% Similarity=0.600 Sum_probs=7.6
Q ss_pred CCCCCcHHHHH
Q 032419 38 PKRPASAFFVF 48 (141)
Q Consensus 38 PKrP~say~lF 48 (141)
..||+++|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 35788887655
No 46
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=23.27 E-value=1.1e+02 Score=18.89 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCChHhhH
Q 032419 50 EEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEADKA 86 (141)
Q Consensus 50 ~e~r~~~~~~~p~~~-~~~ei~k~l~~~Wk~Ls~~eK~ 86 (141)
+..|..++.-||+.. ...+..+.|.+.|..|++..+.
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R 64 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKR 64 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHH
Confidence 344556677789832 3457888999999998876543
No 47
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.04 E-value=58 Score=20.57 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=13.7
Q ss_pred CCCCCCcHHHHHHHHHH
Q 032419 37 KPKRPASAFFVFMEEFR 53 (141)
Q Consensus 37 ~PKrP~say~lF~~e~r 53 (141)
-|+|...||..||..-+
T Consensus 63 L~~rG~~Af~~F~~aL~ 79 (97)
T 3ygs_P 63 LETRGSQALPLFISCLE 79 (97)
T ss_dssp HTTSCTTHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHH
Confidence 46788899999998754
No 48
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=21.99 E-value=23 Score=17.01 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=7.9
Q ss_pred CCCCCCCcHHH
Q 032419 36 NKPKRPASAFF 46 (141)
Q Consensus 36 ~~PKrP~say~ 46 (141)
.+|-.|+|||.
T Consensus 9 qppapppnafv 19 (26)
T 2lkw_A 9 QPPAPPPNAFV 19 (26)
T ss_pred cCCCcCCCeeE
Confidence 46667888875
No 49
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=20.03 E-value=93 Score=18.16 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCChHhh-HhHH
Q 032419 50 EEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEADK-APYV 89 (141)
Q Consensus 50 ~e~r~~~~~~~p~~~~-~~ei~k~l~~~Wk~Ls~~eK-~~Y~ 89 (141)
+..|..++.-||+... ..+....|...|..|++..+ ..|.
T Consensus 27 ~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (73)
T 2och_A 27 KAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68 (73)
T ss_dssp HHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3445556677888321 24778889999988886554 3443
Done!