Query 032420
Match_columns 141
No_of_seqs 115 out of 1221
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 13:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02879 L-ascorbate peroxidas 100.0 5.1E-45 1.1E-49 296.3 14.3 139 1-139 2-140 (251)
2 PLN02364 L-ascorbate peroxidas 100.0 3E-44 6.6E-49 291.6 14.0 139 1-139 1-139 (250)
3 PLN02608 L-ascorbate peroxidas 100.0 5.1E-43 1.1E-47 289.3 15.5 135 5-139 3-137 (289)
4 cd00691 ascorbate_peroxidase A 100.0 1.3E-37 2.8E-42 253.2 13.6 134 6-139 2-139 (253)
5 cd00649 catalase_peroxidase_1 100.0 3.4E-35 7.4E-40 251.2 8.7 111 15-125 43-164 (409)
6 cd00692 ligninase Ligninase an 100.0 3.1E-34 6.7E-39 240.5 11.6 124 15-139 16-151 (328)
7 PF00141 peroxidase: Peroxidas 100.0 8.5E-35 1.8E-39 233.3 4.7 114 19-138 1-123 (230)
8 cd00314 plant_peroxidase_like 100.0 4.6E-33 9.9E-38 224.8 12.4 121 18-138 2-134 (255)
9 TIGR00198 cat_per_HPI catalase 100.0 4E-33 8.8E-38 251.2 7.9 110 15-124 53-173 (716)
10 cd08201 plant_peroxidase_like_ 100.0 4.4E-33 9.5E-38 227.4 5.0 105 30-139 39-145 (264)
11 PRK15061 catalase/hydroperoxid 100.0 4.7E-32 1E-36 243.7 8.8 111 15-125 55-176 (726)
12 cd00693 secretory_peroxidase H 100.0 8.5E-32 1.8E-36 223.4 8.5 118 14-139 13-144 (298)
13 cd08200 catalase_peroxidase_2 100.0 1.1E-30 2.4E-35 215.9 12.8 116 4-125 7-137 (297)
14 PLN03030 cationic peroxidase; 100.0 7.5E-31 1.6E-35 219.7 7.8 117 15-139 37-164 (324)
15 TIGR00198 cat_per_HPI catalase 99.9 1.5E-26 3.2E-31 208.9 13.5 107 27-133 442-560 (716)
16 PRK15061 catalase/hydroperoxid 99.9 1.8E-26 4E-31 207.8 13.5 126 4-135 432-577 (726)
17 COG0376 KatG Catalase (peroxid 99.9 5.5E-25 1.2E-29 192.8 6.3 112 15-126 68-190 (730)
18 COG0376 KatG Catalase (peroxid 99.5 2.6E-14 5.7E-19 126.1 7.9 99 27-125 459-566 (730)
19 PF00043 GST_C: Glutathione S- 46.6 76 0.0017 20.4 5.3 39 72-110 31-74 (95)
20 TIGR01911 HesB_rel_seleno HesB 38.8 6.5 0.00014 27.2 -1.0 36 17-62 8-44 (92)
21 PF11020 DUF2610: Domain of un 36.1 89 0.0019 21.6 4.3 26 78-104 54-79 (82)
22 cd05029 S-100A6 S-100A6: S-100 27.7 1.4E+02 0.0031 20.1 4.3 18 90-107 67-84 (88)
23 PF08782 c-SKI_SMAD_bind: c-SK 26.7 22 0.00047 25.3 0.0 22 40-71 4-25 (96)
24 PLN02438 inositol-3-phosphate 25.8 2.7E+02 0.006 25.4 6.7 74 13-117 203-283 (510)
25 PRK13859 type IV secretion sys 23.5 40 0.00087 21.5 0.8 21 105-125 21-41 (55)
26 PRK11170 nagA N-acetylglucosam 21.9 3.1E+02 0.0067 23.5 6.2 94 27-120 246-357 (382)
27 cd03179 GST_C_1 GST_C family, 20.9 1.6E+02 0.0034 19.1 3.4 28 74-101 48-80 (105)
28 KOG0693 Myo-inositol-1-phospha 20.1 4.1E+02 0.009 23.7 6.5 65 14-102 204-272 (512)
No 1
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=5.1e-45 Score=296.29 Aligned_cols=139 Identities=73% Similarity=1.272 Sum_probs=134.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHhhhcccccCCCCCCCCCeeEecchhhcccccCcHHHHHHH
Q 032420 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (141)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~lRlafHD~~t~d~~~~~GG~dgSi~l~~E~~~~~N~gL~~~~~~ 80 (141)
|.|.+|++.++|+++++.++++|.+++++++|+|.+|||+||||+|||..+++|||||||+|.+|+++++|.||+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 2 VKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred CcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHhCCCCChHhHHHHHHHHHHHhhCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 032420 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLY 139 (141)
Q Consensus 81 l~~ik~~~~~VS~ADli~lA~~~Av~~~GGP~i~~~~GR~D~~~~~~~g~lP~p~~~~~ 139 (141)
|++||++++.|||||||+||+++||+++|||.|+|++||+|+.+++|+++||.|+.+.+
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~ 140 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVD 140 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999988754
No 2
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=3e-44 Score=291.61 Aligned_cols=139 Identities=77% Similarity=1.316 Sum_probs=134.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHhhhcccccCCCCCCCCCeeEecchhhcccccCcHHHHHHH
Q 032420 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (141)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~lRlafHD~~t~d~~~~~GG~dgSi~l~~E~~~~~N~gL~~~~~~ 80 (141)
|+|+||.+.++|++++++++++|++++.+++++|.+|||+||||+|||...+.|||||||++++|+++++|.||.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (250)
T PLN02364 1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRL 80 (250)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCChHhHHHHHHHHHHHhhCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 032420 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLY 139 (141)
Q Consensus 81 l~~ik~~~~~VS~ADli~lA~~~Av~~~GGP~i~~~~GR~D~~~~~~~g~lP~p~~~~~ 139 (141)
|++||++++.|||||||+||+++||+++|||.|+|++||+|++++.++++||.|+.+.+
T Consensus 81 i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~ 139 (250)
T PLN02364 81 LDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCD 139 (250)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHH
Confidence 99999999999999999999999999999999999999999999999999999987743
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=5.1e-43 Score=289.26 Aligned_cols=135 Identities=63% Similarity=1.054 Sum_probs=130.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHhhhcccccCCCCCCCCCeeEecchhhcccccCcHHHHHHHHHHH
Q 032420 5 YPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (141)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~lRlafHD~~t~d~~~~~GG~dgSi~l~~E~~~~~N~gL~~~~~~l~~i 84 (141)
.|.+|.+|.++++.+|++|+++++++.++|.+|||+||||+|||..+++|||||||++.+|.++++|.||++++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~i 82 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPV 82 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHhCCCCChHhHHHHHHHHHHHhhCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 032420 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLY 139 (141)
Q Consensus 85 k~~~~~VS~ADli~lA~~~Av~~~GGP~i~~~~GR~D~~~~~~~g~lP~p~~~~~ 139 (141)
|.+++.|||||||+||+++||+++|||.|+|++||+|+.++.++++||.|+.+.+
T Consensus 83 K~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~ 137 (289)
T PLN02608 83 KAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAK 137 (289)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHH
Confidence 9999999999999999999999999999999999999999988899999998743
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.3e-37 Score=253.16 Aligned_cols=134 Identities=55% Similarity=1.006 Sum_probs=125.9
Q ss_pred CCCCHHHHH-HHHHHHHHHHHHHhCCCcHHHHHHHHhhhcccccCCCCCCCCCeeEecchhhcccccCcHHHHHHHHHHH
Q 032420 6 PTVSEDYKK-AVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (141)
Q Consensus 6 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~a~~~lRlafHD~~t~d~~~~~GG~dgSi~l~~E~~~~~N~gL~~~~~~l~~i 84 (141)
|++...|.. +++.||+.|+++++++++++.+|||+||||++||.+.+.|||||||++.+|+++++|.||.+++++|++|
T Consensus 2 ~~~~~~~~~~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~i 81 (253)
T cd00691 2 PVVSAAYAAKDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPI 81 (253)
T ss_pred CcccccccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHH
Confidence 678888864 8999999999988899999999999999999999999999999999998999999999999999999999
Q ss_pred HHhCCCCChHhHHHHHHHHHHHhhCCCccccCCCCCCCCCCC---CCCCCCCCCCCCC
Q 032420 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQGLY 139 (141)
Q Consensus 85 k~~~~~VS~ADli~lA~~~Av~~~GGP~i~~~~GR~D~~~~~---~~g~lP~p~~~~~ 139 (141)
|++++.|||||||+||+++||+.+|||.|+|++||+|+.++. ++++||.|+.+.+
T Consensus 82 K~~~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~ 139 (253)
T cd00691 82 KKKYPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGAD 139 (253)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHH
Confidence 999999999999999999999999999999999999999885 7889999988643
No 5
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=3.4e-35 Score=251.19 Aligned_cols=111 Identities=41% Similarity=0.651 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHhCC---------CcHHHHHHHHhhhcccccCCCCCCCCC-eeEecchhhcccccCcHHHHHHHHHHH
Q 032420 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (141)
Q Consensus 15 ~~~~~~~~l~~~~~~~---------~~a~~~lRlafHD~~t~d~~~~~GG~d-gSi~l~~E~~~~~N~gL~~~~~~l~~i 84 (141)
+++++|++|+++|++. +|+|.+||||||+++|||..+++||++ |+|||.+|++|++|.||++++++|++|
T Consensus 43 d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~pi 122 (409)
T cd00649 43 DLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWPI 122 (409)
T ss_pred cHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHHHH
Confidence 7899999999998753 899999999999999999999999998 699999999999999999999999999
Q ss_pred HHhCC-CCChHhHHHHHHHHHHHhhCCCccccCCCCCCCCCC
Q 032420 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP 125 (141)
Q Consensus 85 k~~~~-~VS~ADli~lA~~~Av~~~GGP~i~~~~GR~D~~~~ 125 (141)
|++|+ .|||||||+|||++|||.+|||.|+|.+||.|++.+
T Consensus 123 k~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~ 164 (409)
T cd00649 123 KQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEP 164 (409)
T ss_pred HHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCC
Confidence 99997 799999999999999999999999999999999753
No 6
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.1e-34 Score=240.54 Aligned_cols=124 Identities=31% Similarity=0.498 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHh-CCCcHH---HHHHHHhhhccccc-----CCCCCCCCCeeEecc--hhhcccccCcHHHHHHHHHH
Q 032420 15 AVEKCKRKLRGFIA-EKNCAP---LMLRIAWHSAGTYD-----VKTKTGGPFGTMRLA--AEQAHSANNGLDIAVRLLEP 83 (141)
Q Consensus 15 ~~~~~~~~l~~~~~-~~~~a~---~~lRlafHD~~t~d-----~~~~~GG~dgSi~l~--~E~~~~~N~gL~~~~~~l~~ 83 (141)
+...+++||++.|. ++.|++ .+|||+||||+||+ ..++.|||||||++. .|+++++|.||..+++.|++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~ 95 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRP 95 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHH
Confidence 34567999999764 666655 59999999999999 468899999999884 59999999999999999999
Q ss_pred HHHhCCCCChHhHHHHHHHHHHHh-hCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 032420 84 FKEQFPTISYADLYQLAGVVGVEV-TGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLY 139 (141)
Q Consensus 84 ik~~~~~VS~ADli~lA~~~Av~~-~GGP~i~~~~GR~D~~~~~~~g~lP~p~~~~~ 139 (141)
++++++ |||||||||||++||+. +|||.|+|++||+|++++.++++||.|+.+.+
T Consensus 96 ~~e~~c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~ 151 (328)
T cd00692 96 FHQKHN-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVD 151 (328)
T ss_pred HHHhcC-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHH
Confidence 999985 99999999999999995 69999999999999999999999999998754
No 7
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=8.5e-35 Score=233.33 Aligned_cols=114 Identities=33% Similarity=0.592 Sum_probs=99.9
Q ss_pred HHHHHHHHHh-CCCcHHHHHHHHhhhcccccCCCCCCCCCeeEec-chhhcccccCcHHHHHHHHHHHHHhC----C-CC
Q 032420 19 CKRKLRGFIA-EKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL-AAEQAHSANNGLDIAVRLLEPFKEQF----P-TI 91 (141)
Q Consensus 19 ~~~~l~~~~~-~~~~a~~~lRlafHD~~t~d~~~~~GG~dgSi~l-~~E~~~~~N~gL~~~~~~l~~ik~~~----~-~V 91 (141)
||++|+++++ +++++|++|||+||||++| |||||||++ .+|+++++|.||.+++++|++||.++ | .|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcccccCCC
Confidence 5888888765 6899999999999999966 999999977 78999999999988999999999886 3 59
Q ss_pred ChHhHHHHHHHHHHHhhCCCccccCCCCCCCCCCCCCC--CCCCCCCCC
Q 032420 92 SYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG--RLPDAKQGL 138 (141)
Q Consensus 92 S~ADli~lA~~~Av~~~GGP~i~~~~GR~D~~~~~~~g--~lP~p~~~~ 138 (141)
||||||+||+++||+.+|||.|+|++||+|++++.+.+ +||.|+.+.
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~ 123 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSV 123 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHH
T ss_pred CHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999986554 599997653
No 8
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=4.6e-33 Score=224.75 Aligned_cols=121 Identities=45% Similarity=0.685 Sum_probs=109.6
Q ss_pred HHHHHHHHHH-hCCCcHHHHHHHHhhhcccccCCC-CCCCCCeeEecchhhcccccCcHHHHHHHHHHHHHhCC---CCC
Q 032420 18 KCKRKLRGFI-AEKNCAPLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP---TIS 92 (141)
Q Consensus 18 ~~~~~l~~~~-~~~~~a~~~lRlafHD~~t~d~~~-~~GG~dgSi~l~~E~~~~~N~gL~~~~~~l~~ik~~~~---~VS 92 (141)
.++..|.+.+ +++.+++.+|||+||||+||+..+ +.|||||||++++|+++++|.||.+++++|++||.+++ .||
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~~vS 81 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDGGNPVS 81 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCCCCccc
Confidence 4577777765 468899999999999999999887 78999999999999999999999899999999999995 799
Q ss_pred hHhHHHHHHHHHHHhh--CCCccccCCCCCCCC-----CCCCCCCCCCCCCCC
Q 032420 93 YADLYQLAGVVGVEVT--GGPDIPFHPGRDDKA-----EPPQEGRLPDAKQGL 138 (141)
Q Consensus 93 ~ADli~lA~~~Av~~~--GGP~i~~~~GR~D~~-----~~~~~g~lP~p~~~~ 138 (141)
|||||+||+++||+.+ |||.++|++||+|++ .+.|.+++|.|+.+.
T Consensus 82 ~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~ 134 (255)
T cd00314 82 RADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSA 134 (255)
T ss_pred HHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchH
Confidence 9999999999999999 999999999999998 567888888877653
No 9
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.98 E-value=4e-33 Score=251.22 Aligned_cols=110 Identities=36% Similarity=0.588 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHhCC---------CcHHHHHHHHhhhcccccCCCCCCCCC-eeEecchhhcccccCcHHHHHHHHHHH
Q 032420 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (141)
Q Consensus 15 ~~~~~~~~l~~~~~~~---------~~a~~~lRlafHD~~t~d~~~~~GG~d-gSi~l~~E~~~~~N~gL~~~~~~l~~i 84 (141)
+++++|+||+++|+++ +|+|.+||||||+++||+..+++|||+ |+|||.||++|++|.||++++++|++|
T Consensus 53 d~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pI 132 (716)
T TIGR00198 53 DLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPI 132 (716)
T ss_pred cHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHHHHHHHHHH
Confidence 8889999999999763 899999999999999999999999997 799999999999999999999999999
Q ss_pred HHhCC-CCChHhHHHHHHHHHHHhhCCCccccCCCCCCCCC
Q 032420 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE 124 (141)
Q Consensus 85 k~~~~-~VS~ADli~lA~~~Av~~~GGP~i~~~~GR~D~~~ 124 (141)
|++|| .|||||||+|||++||+.+|||.|+|.+||+|++.
T Consensus 133 k~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~ 173 (716)
T TIGR00198 133 KKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWE 173 (716)
T ss_pred HHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCC
Confidence 99998 89999999999999999999999999999999954
No 10
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=99.97 E-value=4.4e-33 Score=227.40 Aligned_cols=105 Identities=32% Similarity=0.503 Sum_probs=93.3
Q ss_pred CCcHHHHHHHHhhhcccccCCCCCCCCCeeEecchhhcccccCcHH--HHHHHHHHHHHhCCCCChHhHHHHHHHHHHHh
Q 032420 30 KNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLD--IAVRLLEPFKEQFPTISYADLYQLAGVVGVEV 107 (141)
Q Consensus 30 ~~~a~~~lRlafHD~~t~d~~~~~GG~dgSi~l~~E~~~~~N~gL~--~~~~~l~~ik~~~~~VS~ADli~lA~~~Av~~ 107 (141)
+..++.+|||+||||+|||..+++|||||||+| |..++||.|+. ..++.++.|+. +.||||||||||+++||+.
T Consensus 39 ~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV~~ 114 (264)
T cd08201 39 RQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSVAS 114 (264)
T ss_pred ccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999 68899999986 34556665543 3799999999999999999
Q ss_pred hCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 032420 108 TGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLY 139 (141)
Q Consensus 108 ~GGP~i~~~~GR~D~~~~~~~g~lP~p~~~~~ 139 (141)
||||.|+|++||+|++++.|.+ ||.|+.+.+
T Consensus 115 ~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~ 145 (264)
T cd08201 115 CGGPVVPFRAGRIDATEAGQAG-VPEPQTDLG 145 (264)
T ss_pred cCCCeecccccCCCcccccccc-CCCCccCHH
Confidence 9999999999999999998887 999998754
No 11
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.97 E-value=4.7e-32 Score=243.75 Aligned_cols=111 Identities=41% Similarity=0.656 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhCC---------CcHHHHHHHHhhhcccccCCCCCCCCC-eeEecchhhcccccCcHHHHHHHHHHH
Q 032420 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (141)
Q Consensus 15 ~~~~~~~~l~~~~~~~---------~~a~~~lRlafHD~~t~d~~~~~GG~d-gSi~l~~E~~~~~N~gL~~~~~~l~~i 84 (141)
+++++|+||+++|+++ +|+|.+|||+||+++|||..+++|||+ |+|||.+|++|++|.||++++++|++|
T Consensus 55 d~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~pi 134 (726)
T PRK15061 55 DLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKARRLLWPI 134 (726)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHHHHHHHHHH
Confidence 8999999999999763 899999999999999999999999998 699999999999999999999999999
Q ss_pred HHhCC-CCChHhHHHHHHHHHHHhhCCCccccCCCCCCCCCC
Q 032420 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP 125 (141)
Q Consensus 85 k~~~~-~VS~ADli~lA~~~Av~~~GGP~i~~~~GR~D~~~~ 125 (141)
|++|+ .|||||||+|||++|||.||||.|+|.+||.|...+
T Consensus 135 k~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~ 176 (726)
T PRK15061 135 KQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEP 176 (726)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCC
Confidence 99997 899999999999999999999999999999998754
No 12
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=99.97 E-value=8.5e-32 Score=223.40 Aligned_cols=118 Identities=25% Similarity=0.357 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHH-hCCCcHHHHHHHHhhhcccccCCCCCCCCCeeEecc------hhhcccccCcHHHHHHHHHHHHH
Q 032420 14 KAVEKCKRKLRGFI-AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA------AEQAHSANNGLDIAVRLLEPFKE 86 (141)
Q Consensus 14 ~~~~~~~~~l~~~~-~~~~~a~~~lRlafHD~~t~d~~~~~GG~dgSi~l~------~E~~~~~N~gL~~~~~~l~~ik~ 86 (141)
++.+.|++.|++.+ ++++++|.+|||+||||+ ++||||||+|+ +|+++++|.|| +++++|+.||.
T Consensus 13 ~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~-------v~GcDaSill~~~~~~~~E~~~~~N~~l-~g~~~i~~iK~ 84 (298)
T cd00693 13 NAESIVRSVVRAAVKADPRLAAALLRLHFHDCF-------VRGCDASVLLDSTANNTSEKDAPPNLSL-RGFDVIDDIKA 84 (298)
T ss_pred ChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhh-------ccCcceeEEecCCCCCchhccCCCCCCc-chhHHHHHHHH
Confidence 46677899999865 678999999999999999 69999999984 59999999999 68999999997
Q ss_pred hC----C-CCChHhHHHHHHHHHHHhhCCCccccCCCCCCCCCC--CCCCCCCCCCCCCC
Q 032420 87 QF----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP--PQEGRLPDAKQGLY 139 (141)
Q Consensus 87 ~~----~-~VS~ADli~lA~~~Av~~~GGP~i~~~~GR~D~~~~--~~~g~lP~p~~~~~ 139 (141)
.+ | .|||||||+||+++||+.+|||.|+|++||+|+..+ .+.++||.|+.+.+
T Consensus 85 ~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~ 144 (298)
T cd00693 85 ALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVS 144 (298)
T ss_pred HHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHH
Confidence 64 5 899999999999999999999999999999999865 34478999998743
No 13
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.97 E-value=1.1e-30 Score=215.95 Aligned_cols=116 Identities=30% Similarity=0.513 Sum_probs=104.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHhhhcccccCCCCCCCCCee-EecchhhcccccCc--HHHHHHH
Q 032420 4 NYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNG--LDIAVRL 80 (141)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~lRlafHD~~t~d~~~~~GG~dgS-i~l~~E~~~~~N~g--L~~~~~~ 80 (141)
+|+.++++.. +.+|++| +..+.+.+.+||||||+++||+.++++||+||+ |||.||.+|+.|.| |.+++.+
T Consensus 7 ~~~~i~~~di---~~lk~~i---~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~ 80 (297)
T cd08200 7 DYELIDDADI---AALKAKI---LASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAV 80 (297)
T ss_pred CccccCHHHH---HHHHHHH---HhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHH
Confidence 4555665444 5556655 566789999999999999999999999999986 99999999999999 9999999
Q ss_pred HHHHHHhCC-------CCChHhHHHHHHHHHHHhhCC-----CccccCCCCCCCCCC
Q 032420 81 LEPFKEQFP-------TISYADLYQLAGVVGVEVTGG-----PDIPFHPGRDDKAEP 125 (141)
Q Consensus 81 l~~ik~~~~-------~VS~ADli~lA~~~Av~~~GG-----P~i~~~~GR~D~~~~ 125 (141)
|++||++|| .||+||||+|||++|||.+|| |.|+|.+||.|++.+
T Consensus 81 Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~ 137 (297)
T cd08200 81 LEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQE 137 (297)
T ss_pred HHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccC
Confidence 999999997 799999999999999999999 999999999999875
No 14
>PLN03030 cationic peroxidase; Provisional
Probab=99.97 E-value=7.5e-31 Score=219.73 Aligned_cols=117 Identities=23% Similarity=0.326 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHH-hCCCcHHHHHHHHhhhcccccCCCCCCCCCeeEecc---hhhcccccCcHHHHHHHHHHHHHhC--
Q 032420 15 AVEKCKRKLRGFI-AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA---AEQAHSANNGLDIAVRLLEPFKEQF-- 88 (141)
Q Consensus 15 ~~~~~~~~l~~~~-~~~~~a~~~lRlafHD~~t~d~~~~~GG~dgSi~l~---~E~~~~~N~gL~~~~~~l~~ik~~~-- 88 (141)
+.+.|++.|++.+ ++++.++++|||+||||+ ++||||||+++ .|++.+.|.+| +++++|+.+|..+
T Consensus 37 aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCf-------v~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf~~i~~iK~~~e~ 108 (324)
T PLN03030 37 AESIVRKTVQSHFQSNPAIAPGLLRMHFHDCF-------VRGCDASILIDGSNTEKTALPNLLL-RGYDVIDDAKTQLEA 108 (324)
T ss_pred HHHHHHHHHHHHHhhCcccchhhhhhhhhhhe-------ecCCceEEeeCCCcccccCCCCcCc-chHHHHHHHHHHHHh
Confidence 6778899999865 688999999999999999 79999999995 69999999988 6899999999764
Q ss_pred --C-CCChHhHHHHHHHHHHHhhCCCccccCCCCCCCCCC--CCCCCCCCCCCCCC
Q 032420 89 --P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP--PQEGRLPDAKQGLY 139 (141)
Q Consensus 89 --~-~VS~ADli~lA~~~Av~~~GGP~i~~~~GR~D~~~~--~~~g~lP~p~~~~~ 139 (141)
| +|||||||+||+++||..+|||.|+|.+||+|+.+| ++.++||.|+.+.+
T Consensus 109 ~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~ 164 (324)
T PLN03030 109 ACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSID 164 (324)
T ss_pred hCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHH
Confidence 6 799999999999999999999999999999999876 44568999998753
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.94 E-value=1.5e-26 Score=208.88 Aligned_cols=107 Identities=31% Similarity=0.500 Sum_probs=98.1
Q ss_pred HhCCCcHHHHHHHHhhhcccccCCCCCCCCCee-Eecchhhccccc--CcHHHHHHHHHHHHHhCC--CCChHhHHHHHH
Q 032420 27 IAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQFP--TISYADLYQLAG 101 (141)
Q Consensus 27 ~~~~~~a~~~lRlafHD~~t~d~~~~~GG~dgS-i~l~~E~~~~~N--~gL~~~~~~l~~ik~~~~--~VS~ADli~lA~ 101 (141)
+..+.+.+.+||||||+++|||.++++||+||+ |||.+|.+|+.| .||.+++.+|++||++|| .||+||||+|||
T Consensus 442 ~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~~~vS~ADLivLaG 521 (716)
T TIGR00198 442 LASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEFAKGPVSLADLIVLGG 521 (716)
T ss_pred HhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 466788999999999999999999999999995 999999999999 899999999999999998 899999999999
Q ss_pred HHHHHhh---CCC--ccccCCCCCCCCCC--CCCCCCCC
Q 032420 102 VVGVEVT---GGP--DIPFHPGRDDKAEP--PQEGRLPD 133 (141)
Q Consensus 102 ~~Av~~~---GGP--~i~~~~GR~D~~~~--~~~g~lP~ 133 (141)
++|||.+ ||| .|+|.+||.|++.. .++++.|.
T Consensus 522 ~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l 560 (716)
T TIGR00198 522 GAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPL 560 (716)
T ss_pred HHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccC
Confidence 9999998 897 68999999999876 45555553
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.94 E-value=1.8e-26 Score=207.80 Aligned_cols=126 Identities=30% Similarity=0.470 Sum_probs=106.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHhhhcccccCCCCCCCCCee-EecchhhcccccC--cHHHHHHH
Q 032420 4 NYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANN--GLDIAVRL 80 (141)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~lRlafHD~~t~d~~~~~GG~dgS-i~l~~E~~~~~N~--gL~~~~~~ 80 (141)
+|++++++.+ ..+|++| +..+-..+.+||+|||+++|||.++++||+||+ |||.+|.+|+.|+ ||.+++.+
T Consensus 432 ~~~~~~~~di---~~lk~~i---~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~ 505 (726)
T PRK15061 432 DHELIDDADI---AALKAKI---LASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAV 505 (726)
T ss_pred CcccCCHHHH---HHHHHHH---HhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHH
Confidence 3455555443 4445554 566777999999999999999999999999985 9999999999999 99999999
Q ss_pred HHHHHHhC-------CCCChHhHHHHHHHHHHHhh---CC--CccccCCCCCCCCCC--CCC---CCCCCCC
Q 032420 81 LEPFKEQF-------PTISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEP--PQE---GRLPDAK 135 (141)
Q Consensus 81 l~~ik~~~-------~~VS~ADli~lA~~~Av~~~---GG--P~i~~~~GR~D~~~~--~~~---g~lP~p~ 135 (141)
|++||++| |.||+||||+|||++|||.+ || |.|+|.+||.|++.. .++ .++|...
T Consensus 506 LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Ad 577 (726)
T PRK15061 506 LEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKAD 577 (726)
T ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCc
Confidence 99999998 58999999999999999998 57 999999999999876 333 2567644
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.91 E-value=5.5e-25 Score=192.83 Aligned_cols=112 Identities=40% Similarity=0.651 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHhCC---------CcHHHHHHHHhhhcccccCCCCCCCCC-eeEecchhhcccccCcHHHHHHHHHHH
Q 032420 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (141)
Q Consensus 15 ~~~~~~~~l~~~~~~~---------~~a~~~lRlafHD~~t~d~~~~~GG~d-gSi~l~~E~~~~~N~gL~~~~~~l~~i 84 (141)
++++++++|..++++. +++|.+|||+||.++||+..+|+||+. |..||.++.+||+|.+|++++++|.+|
T Consensus 68 D~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 68 DLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred cHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHHHHHHhhhH
Confidence 8889999999998753 799999999999999999999999998 599999999999999999999999999
Q ss_pred HHhCC-CCChHhHHHHHHHHHHHhhCCCccccCCCCCCCCCCC
Q 032420 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP 126 (141)
Q Consensus 85 k~~~~-~VS~ADli~lA~~~Av~~~GGP~i~~~~GR~D~~~~~ 126 (141)
|++|+ .|||||||.|+|++|++.+|.+.+.|..||.|...+.
T Consensus 148 KkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd 190 (730)
T COG0376 148 KKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPD 190 (730)
T ss_pred hHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCc
Confidence 99998 9999999999999999999999999999999988763
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.52 E-value=2.6e-14 Score=126.13 Aligned_cols=99 Identities=33% Similarity=0.571 Sum_probs=89.0
Q ss_pred HhCCCcHHHHHHHHhhhcccccCCCCCCCCCe-eEecchhhcccccC--cHHHHHHHHHHHHHhCC-CCChHhHHHHHHH
Q 032420 27 IAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANN--GLDIAVRLLEPFKEQFP-TISYADLYQLAGV 102 (141)
Q Consensus 27 ~~~~~~a~~~lRlafHD~~t~d~~~~~GG~dg-Si~l~~E~~~~~N~--gL~~~~~~l~~ik~~~~-~VS~ADli~lA~~ 102 (141)
+..+--.+.++..+|..+.||+.+++.||+|| .|+|.|..+|+.|. -|.+.+.+|+.|...++ .||.||||+|+|.
T Consensus 459 lasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~fnkkvSlADlIVL~G~ 538 (730)
T COG0376 459 LASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEFNKKVSLADLIVLGGN 538 (730)
T ss_pred HHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHhcCccchhHheeecch
Confidence 56677789999999999999999999999997 89999999999995 57889999999999996 7999999999999
Q ss_pred HHHHhh---CC--CccccCCCCCCCCCC
Q 032420 103 VGVEVT---GG--PDIPFHPGRDDKAEP 125 (141)
Q Consensus 103 ~Av~~~---GG--P~i~~~~GR~D~~~~ 125 (141)
.|||.+ +| -.++|.+||.|+++.
T Consensus 539 a~ie~AAk~aG~~v~VPF~pGR~DA~qe 566 (730)
T COG0376 539 AAVEKAAKAAGFSVTVPFAPGRTDASQE 566 (730)
T ss_pred HHHHHHHHhcCceeeeccCCCCcccchh
Confidence 999963 34 467899999999774
No 19
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=46.57 E-value=76 Score=20.37 Aligned_cols=39 Identities=15% Similarity=0.051 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHHHHhC-----CCCChHhHHHHHHHHHHHhhCC
Q 032420 72 NGLDIAVRLLEPFKEQF-----PTISYADLYQLAGVVGVEVTGG 110 (141)
Q Consensus 72 ~gL~~~~~~l~~ik~~~-----~~VS~ADli~lA~~~Av~~~GG 110 (141)
..+.+.++.++..-... ..+|+||+..+....-+...+.
T Consensus 31 ~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~ 74 (95)
T PF00043_consen 31 AKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGP 74 (95)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCC
Confidence 34455677777655532 2799999988888766665543
No 20
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=38.85 E-value=6.5 Score=27.21 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHhhhcccccCCCCCCCCCe-eEec
Q 032420 17 EKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRL 62 (141)
Q Consensus 17 ~~~~~~l~~~~~~~~~a~~~lRlafHD~~t~d~~~~~GG~dg-Si~l 62 (141)
+.+.+.|++++++....+..||+.+ ..|||.| +.-+
T Consensus 8 ~~A~~~i~~ll~~~~~~~~~LRi~v----------~~gGCsG~~Y~~ 44 (92)
T TIGR01911 8 DDAYEEFKDFLKENDIDNDVIRIHF----------AGMGCMGPMFNL 44 (92)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEE----------eCCCccCcccce
Confidence 4566677777754333334588765 2589999 4333
No 21
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=36.10 E-value=89 Score=21.62 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCCChHhHHHHHHHHH
Q 032420 78 VRLLEPFKEQFPTISYADLYQLAGVVG 104 (141)
Q Consensus 78 ~~~l~~ik~~~~~VS~ADli~lA~~~A 104 (141)
+..|.++..+. .||.+||+++|-.+|
T Consensus 54 l~kL~~La~~N-~v~feeLc~YAL~~a 79 (82)
T PF11020_consen 54 LSKLYKLAKEN-NVSFEELCVYALGVA 79 (82)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHh
Confidence 33344444444 899999999997766
No 22
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=27.70 E-value=1.4e+02 Score=20.07 Aligned_cols=18 Identities=6% Similarity=0.338 Sum_probs=16.3
Q ss_pred CCChHhHHHHHHHHHHHh
Q 032420 90 TISYADLYQLAGVVGVEV 107 (141)
Q Consensus 90 ~VS~ADli~lA~~~Av~~ 107 (141)
.|++.+++.+-+..|+.+
T Consensus 67 ~Idf~EFv~lm~~l~~~~ 84 (88)
T cd05029 67 EVNFQEYVTFLGALALIY 84 (88)
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 899999999999998864
No 23
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=26.69 E-value=22 Score=25.34 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=11.8
Q ss_pred HhhhcccccCCCCCCCCCeeEecchhhccccc
Q 032420 40 AWHSAGTYDVKTKTGGPFGTMRLAAEQAHSAN 71 (141)
Q Consensus 40 afHD~~t~d~~~~~GG~dgSi~l~~E~~~~~N 71 (141)
.+|+|+ |||.|++. |++--..|
T Consensus 4 V~HeC~--------g~c~G~f~--P~lY~~~~ 25 (96)
T PF08782_consen 4 VYHECF--------GGCRGSFI--PELYSSPN 25 (96)
T ss_dssp EEE-ST--------T-EEEEE---GGG--STT
T ss_pred eEEeec--------CccceEec--hhhcCCCC
Confidence 379998 99999965 34433333
No 24
>PLN02438 inositol-3-phosphate synthase
Probab=25.79 E-value=2.7e+02 Score=25.42 Aligned_cols=74 Identities=24% Similarity=0.321 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHhhhcccccCCCCCCCCCeeEecc---hhhc----ccccCcHHHHHHHHHHHH
Q 032420 13 KKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA---AEQA----HSANNGLDIAVRLLEPFK 85 (141)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~a~~~lRlafHD~~t~d~~~~~GG~dgSi~l~---~E~~----~~~N~gL~~~~~~l~~ik 85 (141)
.+.++++|+||++|-+ ..|+|--|++. .|.- .+.|..+ -.+++.++
T Consensus 203 ~e~ve~ir~DIr~Fk~------------------------~n~ld~vVVlwtAsTEr~~~~~~~~~~t~---~~l~~ai~ 255 (510)
T PLN02438 203 KEQMDQIRKDIREFKE------------------------KNKVDKVVVLWTANTERYSNVVVGLNDTM---ENLLASIE 255 (510)
T ss_pred HHHHHHHHHHHHHHHH------------------------HhCCCeEEEEECCCCCCCCcCCCcccCCH---HHHHHHHh
Confidence 4677888888887755 35788777763 2322 2333333 34566677
Q ss_pred HhCCCCChHhHHHHHHHHHHHhhCCCccccCC
Q 032420 86 EQFPTISYADLYQLAGVVGVEVTGGPDIPFHP 117 (141)
Q Consensus 86 ~~~~~VS~ADli~lA~~~Av~~~GGP~i~~~~ 117 (141)
+..+.||-+=+.+.|+-. .|-|.|.+.+
T Consensus 256 ~~~~eispS~~YA~AAl~----eG~~fVNgsP 283 (510)
T PLN02438 256 KDEAEISPSTLYALACIL----EGVPFINGSP 283 (510)
T ss_pred cCCCcCChHHHHHHHHHH----cCCCeEecCC
Confidence 766789999888887763 5666665544
No 25
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=23.49 E-value=40 Score=21.49 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=16.0
Q ss_pred HHhhCCCccccCCCCCCCCCC
Q 032420 105 VEVTGGPDIPFHPGRDDKAEP 125 (141)
Q Consensus 105 v~~~GGP~i~~~~GR~D~~~~ 125 (141)
+..|.||.+++-+||=-.+.|
T Consensus 21 lAtckGpiFpLNVgrWqptps 41 (55)
T PRK13859 21 LASCKGPIFPLNVGRWQPTPS 41 (55)
T ss_pred cccccCCccccccccccCChh
Confidence 456889999999999655443
No 26
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=21.87 E-value=3.1e+02 Score=23.50 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=55.8
Q ss_pred HhCC-CcHHHHHHHHhhhcc-----cccCCCCCCCCCeeEecch-------hhcccccCcHH-HHHHHHHHHHHhC--CC
Q 032420 27 IAEK-NCAPLMLRIAWHSAG-----TYDVKTKTGGPFGTMRLAA-------EQAHSANNGLD-IAVRLLEPFKEQF--PT 90 (141)
Q Consensus 27 ~~~~-~~a~~~lRlafHD~~-----t~d~~~~~GG~dgSi~l~~-------E~~~~~N~gL~-~~~~~l~~ik~~~--~~ 90 (141)
|.|+ +..|.+||++|.-.+ .=|.....|-.||...|.. -..+-++..|. .....++.++.-. -.
T Consensus 246 I~Dg~Hv~p~~~~~~~~~k~~~~~lvtDa~~~~G~~~g~y~l~~~~v~v~~g~~~~~~G~LAGs~l~l~~~v~~l~~~~~ 325 (382)
T PRK11170 246 IADGLHVDYANIRNAKRLKGDKLCLVTDATAPAGANIEQFIFAGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEHVG 325 (382)
T ss_pred EcCcccCCHHHHHHHHHhcCCcEEEEeccccCCCCCCCeEEECCEEEEEECCEEECCCCcccccHhHHHHHHHHHHHhcC
Confidence 4443 578999999987764 1122233455668766531 01112333343 2455555565433 27
Q ss_pred CChHhHHHHHHHHHHHhhCCCc--cccCCCCC
Q 032420 91 ISYADLYQLAGVVGVEVTGGPD--IPFHPGRD 120 (141)
Q Consensus 91 VS~ADli~lA~~~Av~~~GGP~--i~~~~GR~ 120 (141)
+|+.++|.++....-+..|-+. =.+..|+.
T Consensus 326 ~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ 357 (382)
T PRK11170 326 IALDEALRMATLYPARAIGVDKRLGSIEAGKV 357 (382)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCccccCCCCc
Confidence 8999999999999888888542 34555543
No 27
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=20.90 E-value=1.6e+02 Score=19.11 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHh--C--C-CCChHhHHHHHH
Q 032420 74 LDIAVRLLEPFKEQ--F--P-TISYADLYQLAG 101 (141)
Q Consensus 74 L~~~~~~l~~ik~~--~--~-~VS~ADli~lA~ 101 (141)
+.+.++.|+...+. | + .+|.||+....-
T Consensus 48 ~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~ 80 (105)
T cd03179 48 GHAALAVLEAHLAGRDFLVGDALTIADIALAAY 80 (105)
T ss_pred HHHHHHHHHHHHccCccccCCCCCHHHHHHHHH
Confidence 44566667665432 2 2 899999987543
No 28
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=20.06 E-value=4.1e+02 Score=23.74 Aligned_cols=65 Identities=23% Similarity=0.345 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHhhhcccccCCCCCCCCCeeEecc---hhhcccccCcHH-HHHHHHHHHHHhCC
Q 032420 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA---AEQAHSANNGLD-IAVRLLEPFKEQFP 89 (141)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~a~~~lRlafHD~~t~d~~~~~GG~dgSi~l~---~E~~~~~N~gL~-~~~~~l~~ik~~~~ 89 (141)
.+++.+|+|++++-++ .|.|--|.|. .|+--..-.||. .+-++++.|+....
T Consensus 204 eqle~Ir~Dir~Fke~------------------------~~ldkViVLWTANTERy~~V~~GlNdT~enl~~si~~~~~ 259 (512)
T KOG0693|consen 204 EQLEQIRKDIREFKEE------------------------NKLDKVIVLWTANTERYSNVIPGLNDTAENLLESIEKDES 259 (512)
T ss_pred HHHHHHHHHHHHHHHh------------------------cCCceEEEEEecCcceeeccccccchHHHHHHHHHhcCcc
Confidence 5788888888876542 3456556652 344444445664 35667778877666
Q ss_pred CCChHhHHHHHHH
Q 032420 90 TISYADLYQLAGV 102 (141)
Q Consensus 90 ~VS~ADli~lA~~ 102 (141)
.||.+-|.++|..
T Consensus 260 EisPStifA~Asi 272 (512)
T KOG0693|consen 260 EISPSTIFAIASI 272 (512)
T ss_pred ccChHHHHHHHHH
Confidence 8899888877754
Done!