BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032422
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 34 EARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISA---LPLVDHD 90
E +++ ++E+PV+++S++ C +K+LF + V P V+ELD+ +++
Sbjct: 8 EDAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERL 67
Query: 91 ESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGA 138
H P VFIGG +GG V L+ G L P L E A
Sbjct: 68 TGQHT--------VPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 36 RIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHA 95
+IQ IS++ V+IFS++SC C + K LF + V+ V+ELD E D
Sbjct: 41 QIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQF---QDALYKM 97
Query: 96 DSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVP 131
R P +F+ GT +GG LH G L+P
Sbjct: 98 TGER---TVPRIFVNGTFIGGATDTHRLHKEGKLLP 130
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 36 RIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHA 95
+IQ IS++ V+IFS++SC C + K LF + V+ V+ELD E D
Sbjct: 27 QIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQF---QDALYKM 83
Query: 96 DSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVP 131
R P +F+ GT +GG LH G L+P
Sbjct: 84 TGER---TVPRIFVNGTFIGGATDTHRLHKEGKLLP 116
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 36 RIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHA 95
+ + L S PV++FS++ C C+ +K L +G V+ELD+ L +SA A
Sbjct: 12 KAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDE-----LSDGSQLQSALA 66
Query: 96 DSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGA 138
P VFIGG +GG +++V H L+P L + A
Sbjct: 67 HWT-GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 108
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 36 RIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHA 95
+ + L S PV++FS++ C C+ +K L +G V+ELD+ L D + A
Sbjct: 13 KAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDE-------LSDGSQLQSA 65
Query: 96 DS-PRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGA 138
+ P VFIGG +GG +++V H L+P L + A
Sbjct: 66 LAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 109
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 36 RIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHA 95
+IQ IS++ V+IFS++SC C + K LF + V+ V+ELD E D
Sbjct: 19 QIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQF---QDALYKM 75
Query: 96 DSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVP 131
R P +F+ GT +GG LH G L+P
Sbjct: 76 TGER---TVPRIFVNGTFIGGATDTHRLHKEGKLLP 108
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 34 EARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESA 93
E I++ ++E+ V+I+S++ C C +KTLF +GV P V+ELD L E
Sbjct: 9 EESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERL 68
Query: 94 HADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVE 135
P VF+ G +GG V L+ G L L E
Sbjct: 69 TGQH-----TVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAE 105
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 41 ISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRN 100
I V++F + +C C + + + + + ++E D I+A + + +
Sbjct: 10 IQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVD--ITATNHTNEIQD-YLQQLTG 66
Query: 101 PAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGAL 139
P VFIG C+GG LV+L G L+ +L +IGAL
Sbjct: 67 ARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGAL 105
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 33 SEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDES 92
++A + I V++F + +C C + L + + ++E D ++ D
Sbjct: 1 AQAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYL 60
Query: 93 AHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGAL 139
R P VFIG C+GG L ++H G L+ +L ++GA+
Sbjct: 61 QQLTGART---VPRVFIGKECIGGCTDLESMHKRGELLTRLQQVGAV 104
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 40 LISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHA--DS 97
LI V+IFS+S C +K LF+++GV V+ELD VD
Sbjct: 13 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQ--------VDDGARVQEVLSE 64
Query: 98 PRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVE 135
N P +F+ VGG + + G L+ KL++
Sbjct: 65 ITNQKTVPNIFVNKVHVGGCDQTFQAYQSG-LLQKLLQ 101
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAP 105
V++F + +C + + + + + ++E D I+A + + + P
Sbjct: 14 VVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVD--ITATNHTNEIQD-YLQQLTGARTVP 70
Query: 106 AVFIGGTCVGGLESLVALHIGGHLVPKLVEIGAL 139
VFIG +GG LV+L G L+ +L +IGAL
Sbjct: 71 RVFIGKDSIGGSSDLVSLQQSGELLTRLKQIGAL 104
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAP 105
VII++R C C K L A G E ++ + SA P + + S RN P
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGA-----EFNEIDASATPELRAE--MQERSGRNTFPQ- 59
Query: 106 AVFIGGTCVGGLESLVALHIGGHLVPKLVEIGAL 139
+FIG VGG + L AL G L L++ G L
Sbjct: 60 -IFIGSVHVGGCDDLYALEDEGKL-DSLLKTGKL 91
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 45 PVIIFSRSSCCMCHVMKTLFATIGV---HPTVIELDDHEISALPLVDHDE--SAHADSPR 99
P+IIFS+S+C K L + +IELD H H E +
Sbjct: 15 PIIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKH--------GHGEELQEYIKLVT 66
Query: 100 NPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKL 133
P + + G GG E + LH G L+ L
Sbjct: 67 GRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESL 100
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAP 105
V I+++ +C CH K L ++ GV + +D + ++ P
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRS---------GRTTVP 53
Query: 106 AVFIGGTCVGGLESLVALHIGGHLVPKL 133
+FI +GG + L AL G L P L
Sbjct: 54 QIFIDAQHIGGYDDLYALDARGGLDPLL 81
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 42 SEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNP 101
S +I+++R +C C + L GV T I+ ++ L E + RN
Sbjct: 4 SMKEIILYTRPNCPYCKRARDLLDKKGVKYTDID------ASTSL--RQEMVQRANGRNT 55
Query: 102 APAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEI 136
P +FIG VGG + L AL G L L ++
Sbjct: 56 FPQ--IFIGDYHVGGCDDLYALENKGKLDSLLQDV 88
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 34 EARIQRLISEHPVIIFSRSSC--CMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDE 91
E R++ L ++ V++F + + C K + + + T +E + +I V
Sbjct: 7 EERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEIL--NSTGVEYETFDILEDEEVRQGL 64
Query: 92 SAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVP 131
A+++ P P +++ G VGGL+ + L G L+P
Sbjct: 65 KAYSNWP----TYPQLYVKGELVGGLDIVKELKENGELLP 100
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 35 ARIQRLISEHPVIIFSRSSCCMCH-VMKTLFATIGV---HPTVIELDDHEISALPLVDHD 90
A ++ LI + V + +++ C C + TLF + V V+ELD+ + +
Sbjct: 8 AHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDE-------MSNGS 60
Query: 91 ESAHA-DSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHL 129
E A + P V+I G +GG L L G L
Sbjct: 61 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKL 100
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAP 105
V I+++ +C H K L ++ GV + +D + ++ P
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRS---------GRTTVP 53
Query: 106 AVFIGGTCVGGLESLVALHIGGHLVPKL 133
+FI +GG + L AL G L P L
Sbjct: 54 QIFIDAQHIGGYDDLYALDARGGLDPLL 81
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 35 ARIQRLISEHPVIIFSRSSCCMCH-VMKTLFATIGV---HPTVIELDDHEISALPLVDHD 90
A ++ LI + V + +++ C C + TLF + V V+ELD+ + +
Sbjct: 28 AHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDE-------MSNGS 80
Query: 91 ESAHA-DSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHL 129
E A + P V+I G +GG L L G L
Sbjct: 81 EIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKL 120
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 30.0 bits (66), Expect = 0.40, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 37 IQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD 77
+++ + VI+FS+++C C +K + A + IELD
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELD 51
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Nadph
Length = 598
Score = 30.0 bits (66), Expect = 0.41, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 37 IQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD 77
+++ + VI+FS+++C C +K + A + IELD
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELD 51
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin
Glutatione Reductase From Schistosoma Mansoni In
Complex With Auranofin
Length = 598
Score = 30.0 bits (66), Expect = 0.41, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 37 IQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD 77
+++ + VI+FS+++C C +K + A + IELD
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELD 51
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 36 RIQRLISEHPVIIFSRS-----SCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHD 90
+IQR I+E+P++++ + SC A G +++ L + D
Sbjct: 7 KIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDI---------LQNPD 57
Query: 91 ESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGA 138
A N P +++ G VGG + ++ ++ G L + E A
Sbjct: 58 IRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAA 105
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 14/110 (12%)
Query: 36 RIQRLISEHPVIIFSRS-----SCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHD 90
+IQR I+E+P++++ + SC A G +++ L + D
Sbjct: 27 KIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDI---------LQNPD 77
Query: 91 ESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGALW 140
A N P +++ G VGG + ++ ++ G L + E A +
Sbjct: 78 IRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY 127
>pdb|3PNU|A Chain A, 2.4 Angstrom Crystal Structure Of Dihydroorotase (Pyrc)
From Campylobacter Jejuni.
pdb|3PNU|B Chain B, 2.4 Angstrom Crystal Structure Of Dihydroorotase (Pyrc)
From Campylobacter Jejuni
Length = 359
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 23 TNLSIDGEESSEARIQRLISEH----PVIIFSRSSCCMCHVMK---TLFATIGVHPTVIE 75
TN + ES+ A+I +++H +++ ++ +C ++K L+ATI +H +I
Sbjct: 158 TNDFVMDRESNFAKIYEKLAKHFPRLKIVMEHITTKTLCELLKDYENLYATITLHHLIIT 217
Query: 76 LDD 78
LDD
Sbjct: 218 LDD 220
>pdb|2V9K|A Chain A, Crystal Structure Of Human Pus10, A Novel Pseudouridine
Synthase
Length = 530
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 27 IDGEESSEARIQRLISEHPVIIFSRSS 53
IDGE E+ ++ LIS+H + +F S
Sbjct: 309 IDGERKLESSVEELISDHLLAVFKAES 335
>pdb|3EUW|A Chain A, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|B Chain B, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|C Chain C, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|D Chain D, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
Length = 344
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 99 RNPAPAPAVFIGGTCVGGLESLVALH---IGGHLVPKLVEIGA 138
R+PAPAP +I G+ GG+ +H VP +VE+ A
Sbjct: 154 RDPAPAPKDYIAGS--GGIFRDXTIHDLDXARFFVPNIVEVTA 194
>pdb|1FWK|A Chain A, Crystal Structure Of Homoserine Kinase Complexed With Adp
pdb|1FWK|B Chain B, Crystal Structure Of Homoserine Kinase Complexed With Adp
pdb|1FWK|C Chain C, Crystal Structure Of Homoserine Kinase Complexed With Adp
pdb|1FWK|D Chain D, Crystal Structure Of Homoserine Kinase Complexed With Adp
pdb|1FWL|A Chain A, Crystal Structure Of Homoserine Kinase
pdb|1FWL|B Chain B, Crystal Structure Of Homoserine Kinase
pdb|1FWL|C Chain C, Crystal Structure Of Homoserine Kinase
pdb|1FWL|D Chain D, Crystal Structure Of Homoserine Kinase
pdb|1H72|C Chain C, Crystal Structure Of Homoserine Kinase Complexed With Hse
pdb|1H74|A Chain A, Crystal Structure Of Homoserine Kinase Complexed With Ile
pdb|1H74|B Chain B, Crystal Structure Of Homoserine Kinase Complexed With Ile
pdb|1H74|C Chain C, Crystal Structure Of Homoserine Kinase Complexed With Ile
pdb|1H74|D Chain D, Crystal Structure Of Homoserine Kinase Complexed With Ile
pdb|1H73|A Chain A, Crystal Structure Of Homoserine Kinase Complexed With
Threonine
Length = 296
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 75 ELDDHEISALPLVDH---DESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHI 125
EL + L LVD+ E A + + APA+F G T V E L LHI
Sbjct: 107 ELFKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYEPLEVLHI 160
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 43 EHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDE---SAHADSPR 99
+ + IF++ C C K L G L EI ++ HD S A S R
Sbjct: 169 QESISIFTKPGCPFCAKAKQLLHDKG-------LSFEEI----ILGHDATIVSVRAVSGR 217
Query: 100 NPAPAPAVFIGGTCVGGLESL 120
P VFIGG +GG + L
Sbjct: 218 --TTVPQVFIGGKHIGGSDDL 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,117,439
Number of Sequences: 62578
Number of extensions: 147941
Number of successful extensions: 381
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 31
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)