Query 032422
Match_columns 141
No_of_seqs 178 out of 1100
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 13:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 100.0 2.8E-32 6.1E-37 184.7 9.9 99 37-141 1-99 (99)
2 PHA03050 glutaredoxin; Provisi 100.0 4.7E-31 1E-35 181.3 11.3 102 33-140 2-106 (108)
3 PRK10824 glutaredoxin-4; Provi 100.0 2E-30 4.4E-35 179.7 10.4 100 32-140 3-107 (115)
4 KOG1752 Glutaredoxin and relat 100.0 1E-29 2.2E-34 173.2 11.5 102 33-140 3-104 (104)
5 TIGR00365 monothiol glutaredox 99.9 1.1E-27 2.4E-32 161.6 9.2 91 34-133 2-97 (97)
6 cd03028 GRX_PICOT_like Glutare 99.9 9.5E-26 2.1E-30 150.1 8.4 85 37-130 1-90 (90)
7 PTZ00062 glutaredoxin; Provisi 99.9 1.4E-24 3E-29 164.0 11.3 97 31-136 100-201 (204)
8 PRK10638 glutaredoxin 3; Provi 99.9 8.6E-24 1.9E-28 138.3 9.3 83 43-134 1-83 (83)
9 TIGR02181 GRX_bact Glutaredoxi 99.9 1.4E-23 3.1E-28 135.6 8.0 79 46-133 1-79 (79)
10 COG0695 GrxC Glutaredoxin and 99.9 1.8E-22 3.9E-27 131.7 8.6 78 45-129 2-79 (80)
11 COG0278 Glutaredoxin-related p 99.9 4.4E-22 9.6E-27 132.9 10.0 98 31-137 2-105 (105)
12 cd03031 GRX_GRX_like Glutaredo 99.9 3E-22 6.6E-27 144.3 9.3 86 45-136 1-93 (147)
13 TIGR02180 GRX_euk Glutaredoxin 99.9 2.3E-22 5.1E-27 130.4 7.9 82 46-133 1-84 (84)
14 cd03418 GRX_GRXb_1_3_like Glut 99.9 7.9E-22 1.7E-26 125.8 8.4 74 45-127 1-75 (75)
15 cd03419 GRX_GRXh_1_2_like Glut 99.9 8.2E-22 1.8E-26 127.5 7.9 81 45-131 1-81 (82)
16 TIGR02190 GlrX-dom Glutaredoxi 99.9 1.2E-21 2.5E-26 127.2 7.9 75 40-124 4-78 (79)
17 cd03029 GRX_hybridPRX5 Glutare 99.9 3E-21 6.6E-26 122.8 8.3 70 45-124 2-71 (72)
18 cd03027 GRX_DEP Glutaredoxin ( 99.9 2.1E-21 4.5E-26 124.0 7.6 71 45-124 2-72 (73)
19 PRK12759 bifunctional gluaredo 99.8 2.1E-20 4.5E-25 154.2 9.3 92 43-139 1-94 (410)
20 TIGR02183 GRXA Glutaredoxin, G 99.8 5.6E-20 1.2E-24 121.3 7.6 73 46-127 2-81 (86)
21 PRK11200 grxA glutaredoxin 1; 99.8 6E-20 1.3E-24 120.5 7.7 73 45-126 2-81 (85)
22 KOG0911 Glutaredoxin-related p 99.8 5.5E-19 1.2E-23 133.5 8.3 93 35-136 130-227 (227)
23 cd02066 GRX_family Glutaredoxi 99.8 1.3E-18 2.9E-23 108.4 8.1 71 45-124 1-71 (72)
24 cd03030 GRX_SH3BGR Glutaredoxi 99.8 6.1E-18 1.3E-22 113.1 8.6 80 46-134 2-91 (92)
25 PF00462 Glutaredoxin: Glutare 99.7 3.7E-18 7.9E-23 105.0 5.4 60 46-114 1-60 (60)
26 PRK10329 glutaredoxin-like pro 99.7 1.7E-16 3.7E-21 103.7 9.0 64 45-118 2-65 (81)
27 TIGR02194 GlrX_NrdH Glutaredox 99.7 1.4E-16 2.9E-21 101.4 6.9 64 46-119 1-65 (72)
28 TIGR02196 GlrX_YruB Glutaredox 99.5 1.2E-13 2.6E-18 86.3 6.8 66 45-119 1-66 (74)
29 cd02976 NrdH NrdH-redoxin (Nrd 99.4 7.1E-13 1.5E-17 82.7 7.6 66 45-119 1-66 (73)
30 cd02973 TRX_GRX_like Thioredox 99.4 1.8E-12 4E-17 80.7 5.9 58 45-115 2-64 (67)
31 TIGR02200 GlrX_actino Glutared 99.4 2E-12 4.4E-17 81.9 6.1 65 45-118 1-67 (77)
32 KOG2824 Glutaredoxin-related p 99.3 2.7E-12 6E-17 99.7 7.4 88 43-136 130-224 (281)
33 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 3.9E-10 8.4E-15 74.8 6.7 71 32-115 2-77 (89)
34 PF04908 SH3BGR: SH3-binding, 99.1 5.1E-10 1.1E-14 75.7 7.1 81 45-134 2-97 (99)
35 cd00570 GST_N_family Glutathio 99.0 4.9E-09 1.1E-13 63.8 8.5 67 47-122 2-68 (71)
36 cd03040 GST_N_mPGES2 GST_N fam 99.0 6.4E-09 1.4E-13 66.2 8.3 67 45-123 1-71 (77)
37 cd03041 GST_N_2GST_N GST_N fam 98.9 6.5E-09 1.4E-13 66.6 7.6 70 46-124 2-73 (77)
38 cd03037 GST_N_GRX2 GST_N famil 98.9 5.5E-09 1.2E-13 65.6 7.0 67 47-124 2-69 (71)
39 TIGR00411 redox_disulf_1 small 98.8 2.2E-08 4.7E-13 64.0 7.4 62 45-117 2-68 (82)
40 TIGR00412 redox_disulf_2 small 98.8 1.5E-08 3.3E-13 64.9 5.1 55 45-114 2-60 (76)
41 cd03036 ArsC_like Arsenate Red 98.7 1.1E-08 2.3E-13 70.4 4.1 37 46-82 1-37 (111)
42 cd03060 GST_N_Omega_like GST_N 98.7 9.6E-08 2.1E-12 60.0 8.0 65 47-121 2-67 (71)
43 cd02977 ArsC_family Arsenate R 98.7 1.7E-08 3.7E-13 68.4 4.8 36 46-81 1-36 (105)
44 PHA02125 thioredoxin-like prot 98.7 7.2E-08 1.5E-12 61.5 7.0 56 46-115 2-57 (75)
45 TIGR01295 PedC_BrcD bacterioci 98.7 1.7E-07 3.6E-12 65.5 9.4 82 36-117 15-106 (122)
46 cd03059 GST_N_SspA GST_N famil 98.7 2.3E-07 5E-12 58.0 8.6 68 46-123 1-68 (73)
47 cd02975 PfPDO_like_N Pyrococcu 98.7 7.2E-08 1.6E-12 66.3 6.5 65 32-109 10-81 (113)
48 cd03051 GST_N_GTT2_like GST_N 98.7 1.4E-07 2.9E-12 58.9 7.0 68 47-121 2-70 (74)
49 cd03055 GST_N_Omega GST_N fami 98.6 4.6E-07 9.9E-12 59.6 9.1 69 44-122 17-86 (89)
50 PRK01655 spxA transcriptional 98.6 5.3E-08 1.2E-12 68.9 4.4 36 46-81 2-37 (131)
51 cd03045 GST_N_Delta_Epsilon GS 98.6 4.1E-07 9E-12 57.1 7.9 70 46-122 1-70 (74)
52 PF05768 DUF836: Glutaredoxin- 98.6 3.1E-07 6.8E-12 59.5 7.3 53 45-111 1-57 (81)
53 TIGR03140 AhpF alkyl hydropero 98.6 6.5E-08 1.4E-12 82.0 4.8 82 26-115 101-182 (515)
54 TIGR01617 arsC_related transcr 98.5 8E-08 1.7E-12 66.5 3.9 36 46-81 1-36 (117)
55 PRK15317 alkyl hydroperoxide r 98.5 9.9E-08 2.1E-12 80.9 5.0 77 26-115 100-181 (517)
56 PRK12559 transcriptional regul 98.5 2.4E-07 5.2E-12 65.6 5.4 36 46-81 2-37 (131)
57 cd03032 ArsC_Spx Arsenate Redu 98.5 1.9E-07 4E-12 64.5 4.5 35 46-80 2-36 (115)
58 PRK13344 spxA transcriptional 98.5 2.2E-07 4.7E-12 65.9 4.8 36 46-81 2-37 (132)
59 TIGR02187 GlrX_arch Glutaredox 98.5 5.9E-07 1.3E-11 68.1 7.4 70 30-112 121-195 (215)
60 cd03056 GST_N_4 GST_N family, 98.5 1.3E-06 2.9E-11 54.3 7.5 69 47-122 2-70 (73)
61 PF13417 GST_N_3: Glutathione 98.5 9E-07 2E-11 56.2 6.7 67 48-124 1-67 (75)
62 cd03035 ArsC_Yffb Arsenate Red 98.4 2.8E-07 6E-12 62.9 4.2 37 46-82 1-37 (105)
63 TIGR03143 AhpF_homolog putativ 98.4 9.3E-07 2E-11 75.7 7.5 78 23-113 457-539 (555)
64 cd03054 GST_N_Metaxin GST_N fa 98.3 5.8E-06 1.3E-10 51.8 7.9 56 52-124 14-69 (72)
65 cd02954 DIM1 Dim1 family; Dim1 98.3 4.6E-06 1E-10 57.8 7.3 57 46-115 18-82 (114)
66 COG3118 Thioredoxin domain-con 98.3 2E-06 4.4E-11 68.1 5.9 86 20-118 19-114 (304)
67 cd03033 ArsC_15kD Arsenate Red 98.2 2.1E-06 4.6E-11 59.3 5.0 36 45-80 1-36 (113)
68 PF13192 Thioredoxin_3: Thiore 98.2 2.5E-06 5.4E-11 54.5 4.9 54 45-113 2-59 (76)
69 KOG0910 Thioredoxin-like prote 98.2 3.2E-06 6.9E-11 61.0 5.8 72 30-114 47-128 (150)
70 PHA02278 thioredoxin-like prot 98.2 1.6E-05 3.4E-10 54.0 8.8 65 42-115 13-86 (103)
71 cd02953 DsbDgamma DsbD gamma f 98.2 7.8E-06 1.7E-10 54.6 6.6 67 36-109 3-78 (104)
72 cd02947 TRX_family TRX family; 98.1 1.6E-05 3.4E-10 50.4 7.1 58 45-115 13-77 (93)
73 cd02989 Phd_like_TxnDC9 Phosdu 98.1 1.8E-05 3.8E-10 54.3 7.7 61 43-116 22-90 (113)
74 cd03052 GST_N_GDAP1 GST_N fami 98.1 4.5E-05 9.7E-10 48.3 8.9 70 46-122 1-70 (73)
75 cd03053 GST_N_Phi GST_N family 98.1 6.4E-05 1.4E-09 47.2 9.5 71 46-123 2-72 (76)
76 KOG3029 Glutathione S-transfer 98.1 3E-05 6.6E-10 61.3 9.4 63 44-118 89-151 (370)
77 cd02985 TRX_CDSP32 TRX family, 98.1 2.2E-05 4.7E-10 52.7 7.6 60 46-115 19-85 (103)
78 cd03080 GST_N_Metaxin_like GST 98.1 4.2E-05 9.2E-10 48.4 8.3 61 46-123 2-69 (75)
79 cd02949 TRX_NTR TRX domain, no 98.1 1.5E-05 3.2E-10 52.8 6.4 57 46-115 17-81 (97)
80 cd03058 GST_N_Tau GST_N family 98.1 5.3E-05 1.2E-09 47.5 8.4 67 47-123 2-69 (74)
81 cd03061 GST_N_CLIC GST_N famil 98.0 3.3E-05 7.2E-10 51.4 7.2 63 52-124 20-82 (91)
82 cd02994 PDI_a_TMX PDIa family, 98.0 3.1E-05 6.8E-10 51.3 6.6 63 37-112 11-82 (101)
83 cd02957 Phd_like Phosducin (Ph 98.0 5E-05 1.1E-09 51.8 7.7 66 44-123 25-98 (113)
84 cd03042 GST_N_Zeta GST_N famil 98.0 5.5E-05 1.2E-09 47.0 7.2 69 47-122 2-70 (73)
85 cd03049 GST_N_3 GST_N family, 97.9 7.9E-05 1.7E-09 46.6 7.6 66 47-122 2-70 (73)
86 cd02986 DLP Dim1 family, Dim1- 97.9 5.1E-05 1.1E-09 52.5 7.2 59 43-114 14-81 (114)
87 PTZ00051 thioredoxin; Provisio 97.9 8E-05 1.7E-09 48.9 7.8 69 35-116 9-86 (98)
88 PRK10996 thioredoxin 2; Provis 97.9 0.00019 4.2E-09 50.9 10.1 98 6-114 13-119 (139)
89 cd02959 ERp19 Endoplasmic reti 97.9 7.3E-05 1.6E-09 51.7 7.6 50 31-80 6-63 (117)
90 cd01659 TRX_superfamily Thiore 97.9 2.8E-05 6E-10 45.0 4.8 56 46-111 1-61 (69)
91 TIGR02187 GlrX_arch Glutaredox 97.9 4.4E-05 9.6E-10 57.8 6.8 67 37-114 14-90 (215)
92 PRK10026 arsenate reductase; P 97.9 3.1E-05 6.7E-10 55.5 5.4 37 44-80 2-38 (141)
93 TIGR02182 GRXB Glutaredoxin, G 97.9 5.8E-05 1.3E-09 56.8 7.2 67 48-125 2-69 (209)
94 cd02948 TRX_NDPK TRX domain, T 97.9 5.9E-05 1.3E-09 50.5 6.5 64 37-114 10-84 (102)
95 TIGR00014 arsC arsenate reduct 97.9 2.5E-05 5.4E-10 53.9 4.6 36 46-81 1-36 (114)
96 cd03034 ArsC_ArsC Arsenate Red 97.9 2.4E-05 5.3E-10 53.7 4.4 35 46-80 1-35 (112)
97 cd02963 TRX_DnaJ TRX domain, D 97.8 6.2E-05 1.3E-09 51.3 6.3 57 45-114 27-92 (111)
98 cd03038 GST_N_etherase_LigE GS 97.8 0.0001 2.2E-09 47.5 7.0 65 52-124 14-79 (84)
99 COG1393 ArsC Arsenate reductas 97.8 3.5E-05 7.5E-10 53.6 5.0 37 45-81 2-38 (117)
100 cd03000 PDI_a_TMX3 PDIa family 97.8 6.5E-05 1.4E-09 50.2 6.0 35 32-66 4-39 (104)
101 cd02951 SoxW SoxW family; SoxW 97.8 5.5E-05 1.2E-09 52.2 5.7 31 34-64 3-36 (125)
102 cd02955 SSP411 TRX domain, SSP 97.8 0.00014 3.1E-09 50.9 7.8 78 35-115 6-95 (124)
103 PRK09381 trxA thioredoxin; Pro 97.8 6.9E-05 1.5E-09 50.3 5.9 58 45-115 24-89 (109)
104 cd03076 GST_N_Pi GST_N family, 97.8 0.00028 6E-09 44.4 8.4 69 45-123 1-69 (73)
105 TIGR01616 nitro_assoc nitrogen 97.8 4.8E-05 1E-09 53.5 5.1 36 45-80 2-37 (126)
106 PF00085 Thioredoxin: Thioredo 97.8 2.8E-05 6E-10 51.0 3.6 60 45-115 20-85 (103)
107 PRK10387 glutaredoxin 2; Provi 97.8 0.00011 2.4E-09 54.6 7.2 69 46-125 1-70 (210)
108 cd02962 TMX2 TMX2 family; comp 97.7 0.0002 4.3E-09 51.9 7.8 60 46-115 51-122 (152)
109 cd02987 Phd_like_Phd Phosducin 97.7 9.9E-05 2.1E-09 54.6 6.4 59 45-115 85-149 (175)
110 cd02996 PDI_a_ERp44 PDIa famil 97.7 0.00016 3.5E-09 48.6 6.9 62 38-112 12-89 (108)
111 PRK10853 putative reductase; P 97.7 5E-05 1.1E-09 52.8 4.4 35 46-80 2-36 (118)
112 PF14595 Thioredoxin_9: Thiore 97.7 3.4E-05 7.3E-10 54.4 3.6 70 30-109 29-103 (129)
113 cd03003 PDI_a_ERdj5_N PDIa fam 97.7 0.00018 3.9E-09 47.7 6.8 55 46-113 22-84 (101)
114 PF13409 GST_N_2: Glutathione 97.7 0.0001 2.2E-09 46.2 5.2 67 53-125 1-68 (70)
115 cd02984 TRX_PICOT TRX domain, 97.7 0.00018 3.9E-09 47.0 6.6 59 45-114 17-81 (97)
116 KOG4023 Uncharacterized conser 97.7 3.8E-05 8.2E-10 51.6 3.2 89 45-134 3-97 (108)
117 TIGR01068 thioredoxin thioredo 97.7 0.00026 5.7E-09 46.0 7.0 61 44-115 16-82 (101)
118 cd03048 GST_N_Ure2p_like GST_N 97.7 0.0004 8.7E-09 44.2 7.7 70 46-123 2-74 (81)
119 PF13728 TraF: F plasmid trans 97.7 0.00017 3.8E-09 55.0 6.9 75 31-109 109-189 (215)
120 cd02950 TxlA TRX-like protein 97.7 0.00017 3.6E-09 51.4 6.3 67 37-114 13-90 (142)
121 cd03050 GST_N_Theta GST_N fami 97.7 0.00043 9.3E-09 43.6 7.6 69 47-122 2-70 (76)
122 cd03039 GST_N_Sigma_like GST_N 97.6 0.00053 1.2E-08 42.7 7.9 68 47-123 2-69 (72)
123 cd03005 PDI_a_ERp46 PDIa famil 97.6 0.00015 3.4E-09 47.6 5.4 67 37-114 10-86 (102)
124 PRK13728 conjugal transfer pro 97.6 0.00013 2.9E-09 54.3 5.6 35 45-79 72-110 (181)
125 cd02999 PDI_a_ERp44_like PDIa 97.6 0.00028 6.1E-09 47.2 6.6 55 45-109 21-78 (100)
126 cd02956 ybbN ybbN protein fami 97.6 0.00025 5.3E-09 46.4 6.1 58 46-114 16-79 (96)
127 cd02965 HyaE HyaE family; HyaE 97.6 0.00019 4.1E-09 49.5 5.7 62 43-117 28-99 (111)
128 TIGR02740 TraF-like TraF-like 97.6 0.00023 5E-09 56.1 6.7 73 35-109 159-235 (271)
129 cd02952 TRP14_like Human TRX-r 97.6 0.00028 6.1E-09 49.2 6.3 58 46-109 25-96 (119)
130 cd03006 PDI_a_EFP1_N PDIa fami 97.6 0.00031 6.7E-09 48.4 6.3 60 41-112 26-95 (113)
131 COG4545 Glutaredoxin-related p 97.6 0.00026 5.5E-09 45.4 5.3 73 46-121 4-82 (85)
132 PRK10877 protein disulfide iso 97.5 0.00041 8.9E-09 53.5 7.5 31 44-74 109-142 (232)
133 PF13098 Thioredoxin_2: Thiore 97.5 0.00011 2.4E-09 49.4 3.4 23 43-65 6-28 (112)
134 KOG0907 Thioredoxin [Posttrans 97.5 0.00055 1.2E-08 46.7 6.7 62 44-118 22-95 (106)
135 PRK09481 sspA stringent starva 97.5 0.00084 1.8E-08 50.3 8.3 68 45-122 10-77 (211)
136 TIGR02738 TrbB type-F conjugat 97.5 0.00056 1.2E-08 49.6 7.0 39 41-79 49-91 (153)
137 cd02988 Phd_like_VIAF Phosduci 97.5 0.00044 9.6E-09 51.9 6.6 90 34-137 90-192 (192)
138 cd03004 PDI_a_ERdj5_C PDIa fam 97.5 0.00035 7.5E-09 46.4 5.4 54 45-111 22-83 (104)
139 cd02961 PDI_a_family Protein D 97.5 0.0011 2.4E-08 42.5 7.8 63 36-109 7-77 (101)
140 cd02993 PDI_a_APS_reductase PD 97.5 0.0011 2.4E-08 44.7 7.9 56 44-108 23-83 (109)
141 cd03002 PDI_a_MPD1_like PDI fa 97.4 0.00035 7.7E-09 46.5 5.2 54 45-109 21-80 (109)
142 cd03044 GST_N_EF1Bgamma GST_N 97.4 0.0014 3.1E-08 41.2 7.6 68 47-122 2-70 (75)
143 cd03047 GST_N_2 GST_N family, 97.3 0.002 4.4E-08 40.1 7.7 67 47-120 2-68 (73)
144 TIGR01126 pdi_dom protein disu 97.3 0.00036 7.7E-09 45.6 4.3 54 45-109 16-75 (102)
145 cd02998 PDI_a_ERp38 PDIa famil 97.3 0.001 2.3E-08 43.6 6.3 54 45-109 21-81 (105)
146 cd03001 PDI_a_P5 PDIa family, 97.3 0.00085 1.8E-08 44.1 5.8 53 46-109 22-78 (103)
147 TIGR02739 TraF type-F conjugat 97.3 0.0014 3E-08 51.4 7.4 77 31-109 139-219 (256)
148 PRK13703 conjugal pilus assemb 97.2 0.0016 3.5E-08 50.8 7.5 75 33-109 134-212 (248)
149 TIGR00862 O-ClC intracellular 97.2 0.003 6.6E-08 48.9 8.7 64 52-125 17-80 (236)
150 cd03057 GST_N_Beta GST_N famil 97.2 0.003 6.6E-08 39.6 7.0 69 47-123 2-71 (77)
151 cd02997 PDI_a_PDIR PDIa family 97.1 0.0011 2.3E-08 43.6 5.1 61 45-114 20-88 (104)
152 PRK15113 glutathione S-transfe 97.1 0.0044 9.5E-08 46.5 8.6 70 44-120 4-75 (214)
153 cd03046 GST_N_GTT1_like GST_N 97.0 0.0067 1.5E-07 37.7 7.5 69 47-123 2-70 (76)
154 cd02960 AGR Anterior Gradient 97.0 0.0068 1.5E-07 42.9 8.2 52 28-79 7-67 (130)
155 cd03020 DsbA_DsbC_DsbG DsbA fa 97.0 0.0037 7.9E-08 46.5 7.2 32 43-74 78-111 (197)
156 PF03960 ArsC: ArsC family; I 97.0 0.00096 2.1E-08 45.4 3.7 32 49-80 1-32 (110)
157 PTZ00443 Thioredoxin domain-co 96.9 0.0019 4.1E-08 49.7 5.1 60 44-114 54-119 (224)
158 cd02995 PDI_a_PDI_a'_C PDIa fa 96.9 0.0024 5.3E-08 41.8 4.9 23 45-67 21-43 (104)
159 PLN00410 U5 snRNP protein, DIM 96.9 0.004 8.7E-08 44.7 6.1 36 45-80 25-67 (142)
160 cd03043 GST_N_1 GST_N family, 96.8 0.017 3.8E-07 36.1 8.4 64 51-122 7-70 (73)
161 cd03065 PDI_b_Calsequestrin_N 96.8 0.0037 8.1E-08 43.5 5.7 68 35-115 17-101 (120)
162 cd02992 PDI_a_QSOX PDIa family 96.8 0.0028 6.1E-08 43.3 4.8 23 45-67 22-44 (114)
163 cd03078 GST_N_Metaxin1_like GS 96.8 0.01 2.2E-07 37.6 7.0 57 52-125 14-70 (73)
164 PTZ00062 glutaredoxin; Provisi 96.8 0.0099 2.1E-07 45.1 8.0 65 34-117 6-78 (204)
165 PLN02473 glutathione S-transfe 96.8 0.016 3.4E-07 43.2 9.0 70 46-122 3-72 (214)
166 PLN02378 glutathione S-transfe 96.7 0.0071 1.5E-07 45.5 7.1 61 52-122 18-78 (213)
167 cd03008 TryX_like_RdCVF Trypar 96.7 0.0048 1E-07 44.4 5.8 25 42-66 24-49 (146)
168 PRK00293 dipZ thiol:disulfide 96.7 0.0094 2E-07 51.6 8.2 74 31-113 461-547 (571)
169 PLN02817 glutathione dehydroge 96.7 0.0087 1.9E-07 47.0 7.3 62 51-122 70-131 (265)
170 cd03009 TryX_like_TryX_NRX Try 96.6 0.0048 1E-07 42.6 5.0 21 45-65 21-41 (131)
171 KOG0406 Glutathione S-transfer 96.6 0.014 3.1E-07 45.0 7.9 70 44-123 8-78 (231)
172 cd02972 DsbA_family DsbA famil 96.5 0.0058 1.3E-07 38.9 4.7 22 46-67 1-22 (98)
173 TIGR01262 maiA maleylacetoacet 96.4 0.013 2.8E-07 43.4 6.3 69 48-122 2-70 (210)
174 TIGR00424 APS_reduc 5'-adenyly 96.3 0.0085 1.8E-07 50.7 5.5 56 46-112 375-439 (463)
175 PRK15412 thiol:disulfide inter 96.3 0.019 4.1E-07 42.4 6.9 33 45-77 71-106 (185)
176 TIGR00385 dsbE periplasmic pro 96.3 0.015 3.2E-07 42.5 6.0 23 45-67 66-88 (173)
177 COG2999 GrxB Glutaredoxin 2 [P 96.2 0.0074 1.6E-07 45.0 4.2 63 48-121 3-66 (215)
178 TIGR01130 ER_PDI_fam protein d 96.2 0.018 3.9E-07 47.4 6.9 67 36-113 10-87 (462)
179 cd03010 TlpA_like_DsbE TlpA-li 96.2 0.029 6.2E-07 38.4 6.9 24 44-67 27-50 (127)
180 PLN02309 5'-adenylylsulfate re 96.1 0.035 7.6E-07 47.0 8.4 23 45-67 368-390 (457)
181 PTZ00102 disulphide isomerase; 96.0 0.022 4.8E-07 47.4 6.7 66 36-112 41-117 (477)
182 cd02964 TryX_like_family Trypa 96.0 0.017 3.7E-07 40.0 5.0 21 45-65 20-40 (132)
183 COG3634 AhpF Alkyl hydroperoxi 96.0 0.032 6.8E-07 46.1 7.1 90 26-126 100-196 (520)
184 PF13899 Thioredoxin_7: Thiore 96.0 0.0098 2.1E-07 38.0 3.5 50 31-80 4-62 (82)
185 PTZ00102 disulphide isomerase; 96.0 0.022 4.7E-07 47.4 6.4 23 45-67 378-400 (477)
186 cd03077 GST_N_Alpha GST_N fami 95.9 0.11 2.5E-06 32.9 8.3 65 46-120 2-68 (79)
187 cd03079 GST_N_Metaxin2 GST_N f 95.9 0.08 1.7E-06 33.8 7.3 57 52-124 15-71 (74)
188 cd03011 TlpA_like_ScsD_MtbDsbE 95.7 0.025 5.4E-07 38.3 4.8 25 43-67 21-45 (123)
189 PF07315 DUF1462: Protein of u 95.7 0.033 7.1E-07 36.9 5.0 72 47-123 1-88 (93)
190 cd02982 PDI_b'_family Protein 95.6 0.023 5E-07 37.2 4.3 54 43-109 13-74 (103)
191 cd02966 TlpA_like_family TlpA- 95.6 0.013 2.8E-07 38.1 3.0 25 42-66 19-43 (116)
192 COG0625 Gst Glutathione S-tran 95.5 0.12 2.7E-06 38.4 8.3 66 47-120 2-68 (211)
193 KOG4244 Failed axon connection 95.5 0.11 2.3E-06 41.1 7.9 66 38-120 38-110 (281)
194 PRK10357 putative glutathione 95.4 0.083 1.8E-06 38.9 7.1 64 47-120 2-66 (202)
195 KOG3425 Uncharacterized conser 95.4 0.049 1.1E-06 38.1 5.3 52 31-82 13-79 (128)
196 KOG0908 Thioredoxin-like prote 95.4 0.032 6.8E-07 43.8 4.8 68 34-114 10-87 (288)
197 cd02967 mauD Methylamine utili 95.3 0.039 8.4E-07 36.8 4.5 24 44-67 23-46 (114)
198 TIGR02661 MauD methylamine deh 95.3 0.044 9.4E-07 40.7 5.2 31 45-75 77-111 (189)
199 PLN02395 glutathione S-transfe 95.2 0.25 5.4E-06 36.7 9.2 70 46-123 3-72 (215)
200 PRK11657 dsbG disulfide isomer 95.2 0.019 4.1E-07 44.7 3.2 31 44-74 119-153 (251)
201 KOG0190 Protein disulfide isom 95.2 0.063 1.4E-06 45.8 6.3 70 33-113 31-111 (493)
202 KOG1422 Intracellular Cl- chan 94.9 0.15 3.3E-06 38.9 7.2 62 52-123 19-80 (221)
203 COG4837 Uncharacterized protei 94.8 0.071 1.5E-06 35.6 4.5 76 42-122 3-94 (106)
204 PRK14018 trifunctional thiored 94.8 0.1 2.2E-06 44.9 6.6 22 46-67 60-81 (521)
205 cd02958 UAS UAS family; UAS is 94.6 0.21 4.6E-06 33.7 6.8 74 32-114 5-91 (114)
206 KOG4277 Uncharacterized conser 94.6 0.049 1.1E-06 44.0 4.0 76 31-114 31-112 (468)
207 KOG0868 Glutathione S-transfer 94.6 0.1 2.2E-06 39.1 5.3 66 49-122 11-76 (217)
208 PRK13972 GSH-dependent disulfi 94.5 0.49 1.1E-05 35.3 9.1 56 46-109 2-57 (215)
209 PRK11752 putative S-transferas 94.4 0.25 5.4E-06 38.5 7.7 63 40-110 39-107 (264)
210 COG2143 Thioredoxin-related pr 94.4 0.11 2.3E-06 38.2 5.1 33 33-65 31-65 (182)
211 PRK03147 thiol-disulfide oxido 94.4 0.16 3.5E-06 36.3 6.1 24 42-65 61-84 (173)
212 PHA03075 glutaredoxin-like pro 94.3 0.076 1.6E-06 36.8 4.0 34 44-77 3-36 (123)
213 PF06953 ArsD: Arsenical resis 94.1 0.042 9.2E-07 38.5 2.4 61 59-122 31-93 (123)
214 TIGR01130 ER_PDI_fam protein d 94.1 0.14 3E-06 42.1 5.8 22 45-66 367-388 (462)
215 KOG2501 Thioredoxin, nucleored 94.0 0.17 3.7E-06 36.9 5.4 45 38-82 28-80 (157)
216 COG5494 Predicted thioredoxin/ 93.9 0.16 3.4E-06 39.0 5.4 59 44-115 11-71 (265)
217 cd05295 MDH_like Malate dehydr 93.8 0.14 3.1E-06 43.3 5.3 70 51-125 1-82 (452)
218 PF10568 Tom37: Outer mitochon 93.7 0.54 1.2E-05 29.7 6.7 53 54-123 14-70 (72)
219 cd03007 PDI_a_ERp29_N PDIa fam 93.6 0.48 1E-05 32.8 6.9 68 37-112 11-91 (116)
220 PF06110 DUF953: Eukaryotic pr 93.4 0.13 2.7E-06 35.9 3.8 75 31-109 6-95 (119)
221 PF13905 Thioredoxin_8: Thiore 93.2 0.11 2.4E-06 33.4 3.2 35 46-80 5-45 (95)
222 cd03023 DsbA_Com1_like DsbA fa 93.1 0.059 1.3E-06 37.4 1.8 24 43-66 6-29 (154)
223 COG3019 Predicted metal-bindin 93.1 0.77 1.7E-05 33.0 7.3 75 42-126 24-102 (149)
224 KOG0190 Protein disulfide isom 93.0 0.11 2.4E-06 44.4 3.5 28 44-71 386-413 (493)
225 smart00594 UAS UAS domain. 92.9 0.83 1.8E-05 31.3 7.4 70 31-109 14-92 (122)
226 PF03190 Thioredox_DsbH: Prote 92.6 0.1 2.2E-06 38.3 2.5 78 34-114 27-116 (163)
227 PTZ00057 glutathione s-transfe 92.6 1.1 2.3E-05 33.3 8.1 71 45-121 4-76 (205)
228 PF02114 Phosducin: Phosducin; 92.2 0.62 1.3E-05 36.7 6.6 82 46-139 149-240 (265)
229 cd03012 TlpA_like_DipZ_like Tl 91.8 0.18 3.9E-06 34.5 2.9 23 44-66 25-47 (126)
230 PF08534 Redoxin: Redoxin; In 91.7 0.14 3.1E-06 35.6 2.3 36 44-79 30-73 (146)
231 PF06764 DUF1223: Protein of u 91.6 0.17 3.7E-06 38.3 2.8 72 46-118 2-86 (202)
232 PF02798 GST_N: Glutathione S- 91.4 2.3 5E-05 26.5 7.5 66 46-120 3-70 (76)
233 TIGR03143 AhpF_homolog putativ 91.4 0.31 6.7E-06 42.0 4.5 66 31-109 351-425 (555)
234 COG0526 TrxA Thiol-disulfide i 91.3 0.19 4.1E-06 31.9 2.4 25 43-67 32-57 (127)
235 PLN02919 haloacid dehalogenase 90.4 0.74 1.6E-05 42.9 6.2 22 46-67 424-445 (1057)
236 COG4232 Thiol:disulfide interc 90.1 0.67 1.4E-05 40.3 5.3 89 36-136 464-567 (569)
237 cd03019 DsbA_DsbA DsbA family, 89.5 0.34 7.3E-06 34.7 2.7 24 43-66 16-39 (178)
238 cd03075 GST_N_Mu GST_N family, 89.3 3.9 8.5E-05 25.9 8.6 70 49-120 4-74 (82)
239 TIGR02540 gpx7 putative glutat 89.3 0.37 8.1E-06 34.1 2.8 19 46-64 26-44 (153)
240 KOG1672 ATP binding protein [P 89.1 1.8 3.8E-05 32.9 6.2 96 33-139 74-180 (211)
241 PRK10542 glutathionine S-trans 88.1 2.4 5.2E-05 30.9 6.5 69 47-122 2-71 (201)
242 PF00578 AhpC-TSA: AhpC/TSA fa 87.9 0.45 9.7E-06 31.8 2.3 29 38-66 21-50 (124)
243 TIGR01626 ytfJ_HI0045 conserve 87.9 0.59 1.3E-05 34.9 3.1 42 38-79 55-105 (184)
244 PTZ00056 glutathione peroxidas 87.4 0.6 1.3E-05 35.0 2.9 24 42-65 39-62 (199)
245 PF13462 Thioredoxin_4: Thiore 87.3 0.72 1.6E-05 32.3 3.2 21 44-64 14-34 (162)
246 KOG0191 Thioredoxin/protein di 87.2 0.7 1.5E-05 37.9 3.4 58 41-109 46-107 (383)
247 PTZ00256 glutathione peroxidas 86.9 0.63 1.4E-05 34.2 2.8 19 47-65 46-64 (183)
248 cd00340 GSH_Peroxidase Glutath 86.4 0.69 1.5E-05 32.7 2.7 21 45-66 25-45 (152)
249 KOG0867 Glutathione S-transfer 86.4 6.7 0.00014 29.8 8.3 69 45-120 2-70 (226)
250 cd02970 PRX_like2 Peroxiredoxi 86.3 1.4 3.1E-05 30.3 4.2 28 39-66 19-48 (149)
251 cd02971 PRX_family Peroxiredox 86.2 2.1 4.6E-05 29.1 5.0 21 45-65 25-46 (140)
252 PF04134 DUF393: Protein of un 86.0 1.7 3.7E-05 29.1 4.3 71 48-126 1-76 (114)
253 PF13462 Thioredoxin_4: Thiore 85.7 0.86 1.9E-05 31.9 2.9 24 98-121 131-154 (162)
254 KOG1695 Glutathione S-transfer 85.1 7.5 0.00016 29.5 7.9 66 45-120 3-68 (206)
255 cd03014 PRX_Atyp2cys Peroxired 84.5 2.2 4.7E-05 29.5 4.5 28 38-65 22-50 (143)
256 PLN02399 phospholipid hydroper 83.9 1.2 2.6E-05 34.5 3.1 28 38-65 95-122 (236)
257 COG1331 Highly conserved prote 83.7 4 8.6E-05 36.3 6.5 78 34-114 33-122 (667)
258 PLN02412 probable glutathione 83.6 1.2 2.6E-05 32.2 2.9 20 45-64 32-51 (167)
259 cd03018 PRX_AhpE_like Peroxire 83.4 1.5 3.2E-05 30.4 3.2 20 46-65 32-52 (149)
260 cd02968 SCO SCO (an acronym fo 83.4 1.2 2.6E-05 30.5 2.7 23 43-65 23-46 (142)
261 cd03023 DsbA_Com1_like DsbA fa 82.1 1.3 2.9E-05 30.4 2.6 26 98-123 124-149 (154)
262 KOG0912 Thiol-disulfide isomer 81.7 1.8 3.9E-05 35.2 3.3 31 37-67 6-38 (375)
263 PF11009 DUF2847: Protein of u 80.3 8.4 0.00018 26.2 5.9 73 33-114 9-91 (105)
264 cd03017 PRX_BCP Peroxiredoxin 80.0 2.5 5.4E-05 28.8 3.4 19 46-64 27-46 (140)
265 TIGR03137 AhpC peroxiredoxin. 79.7 3.4 7.4E-05 30.4 4.2 35 43-77 31-74 (187)
266 cd02969 PRX_like1 Peroxiredoxi 79.6 2.3 4.9E-05 30.5 3.1 23 43-65 26-48 (171)
267 COG5429 Uncharacterized secret 79.3 3.1 6.7E-05 32.5 3.9 25 46-70 45-69 (261)
268 PF01323 DSBA: DSBA-like thior 74.3 3.2 7E-05 29.9 2.7 32 45-76 1-37 (193)
269 cd02974 AhpF_NTD_N Alkyl hydro 74.1 4.3 9.3E-05 26.9 3.0 35 32-67 9-43 (94)
270 COG3340 PepE Peptidase E [Amin 73.9 39 0.00084 26.1 8.8 102 22-140 8-121 (224)
271 cd03015 PRX_Typ2cys Peroxiredo 73.9 3.3 7.2E-05 29.8 2.7 23 44-66 30-54 (173)
272 TIGR01689 EcbF-BcbF capsule bi 73.8 12 0.00027 26.1 5.5 49 30-78 26-87 (126)
273 KOG0191 Thioredoxin/protein di 72.9 4.1 8.9E-05 33.4 3.3 27 41-67 161-187 (383)
274 cd03022 DsbA_HCCA_Iso DsbA fam 72.1 4.5 9.8E-05 29.1 3.0 26 98-123 162-187 (192)
275 KOG3171 Conserved phosducin-li 71.8 18 0.0004 28.1 6.2 94 34-139 150-253 (273)
276 TIGR03759 conj_TIGR03759 integ 71.3 11 0.00024 28.6 5.0 38 41-78 107-144 (200)
277 PRK11509 hydrogenase-1 operon 69.9 24 0.00051 25.0 6.1 60 45-117 36-107 (132)
278 PRK10606 btuE putative glutath 69.7 4.3 9.3E-05 30.1 2.5 22 38-59 21-42 (183)
279 PRK09437 bcp thioredoxin-depen 68.3 9.9 0.00021 26.5 4.0 21 42-62 29-51 (154)
280 PF15643 Tox-PL-2: Papain fold 68.3 22 0.00048 24.0 5.4 43 32-79 4-47 (100)
281 PF01323 DSBA: DSBA-like thior 67.7 5.4 0.00012 28.7 2.6 26 98-123 162-188 (193)
282 PRK00522 tpx lipid hydroperoxi 67.4 5.4 0.00012 28.7 2.6 41 38-78 40-84 (167)
283 PRK05282 (alpha)-aspartyl dipe 67.3 45 0.00097 25.8 7.7 85 31-135 18-108 (233)
284 cd03016 PRX_1cys Peroxiredoxin 67.2 9.5 0.00021 28.4 3.9 40 39-78 21-69 (203)
285 COG4822 CbiK Cobalamin biosynt 66.9 41 0.00089 26.2 7.3 100 6-114 99-209 (265)
286 PRK10954 periplasmic protein d 66.7 3.8 8.3E-05 30.6 1.7 20 43-62 38-57 (207)
287 TIGR03865 PQQ_CXXCW PQQ-depend 65.2 11 0.00023 27.3 3.8 29 42-70 115-143 (162)
288 PF03227 GILT: Gamma interfero 64.2 4.9 0.00011 27.1 1.7 16 45-60 2-17 (108)
289 KOG3414 Component of the U4/U6 63.5 27 0.00058 24.8 5.3 69 33-114 10-90 (142)
290 cd03025 DsbA_FrnE_like DsbA fa 63.0 5.2 0.00011 28.9 1.8 22 45-66 2-23 (193)
291 COG2761 FrnE Predicted dithiol 60.8 4.9 0.00011 31.1 1.3 23 45-67 7-29 (225)
292 PF10865 DUF2703: Domain of un 60.5 24 0.00051 24.6 4.6 13 102-114 60-72 (120)
293 PF11287 DUF3088: Protein of u 60.4 6.1 0.00013 27.2 1.6 47 54-112 24-77 (112)
294 PRK10954 periplasmic protein d 59.7 9.5 0.00021 28.4 2.7 20 98-117 162-181 (207)
295 COG1651 DsbG Protein-disulfide 59.0 11 0.00024 28.5 3.1 23 98-120 210-232 (244)
296 PRK10382 alkyl hydroperoxide r 57.4 18 0.00039 26.8 3.9 20 45-64 33-54 (187)
297 PTZ00137 2-Cys peroxiredoxin; 55.5 21 0.00046 28.1 4.2 42 37-78 92-142 (261)
298 PRK15317 alkyl hydroperoxide r 55.3 12 0.00026 31.9 2.9 34 33-67 10-43 (517)
299 KOG0913 Thiol-disulfide isomer 53.8 3.3 7.2E-05 32.2 -0.6 47 34-80 31-84 (248)
300 PF04566 RNA_pol_Rpb2_4: RNA p 53.2 11 0.00023 23.1 1.7 14 107-120 1-14 (63)
301 cd03019 DsbA_DsbA DsbA family, 52.5 15 0.00032 26.0 2.6 19 98-116 138-156 (178)
302 COG1651 DsbG Protein-disulfide 52.2 14 0.0003 28.0 2.6 21 46-66 122-142 (244)
303 TIGR03140 AhpF alkyl hydropero 50.6 16 0.00034 31.2 2.9 35 32-67 9-43 (515)
304 PF06053 DUF929: Domain of unk 50.2 11 0.00024 29.6 1.8 25 40-64 54-80 (249)
305 COG3011 Predicted thiol-disulf 49.5 54 0.0012 23.4 5.0 37 42-78 6-44 (137)
306 cd01444 GlpE_ST GlpE sulfurtra 49.4 51 0.0011 20.6 4.7 39 31-70 44-82 (96)
307 cd03022 DsbA_HCCA_Iso DsbA fam 49.4 17 0.00037 26.0 2.6 27 46-72 1-31 (192)
308 PF09822 ABC_transp_aux: ABC-t 49.2 45 0.00098 25.7 5.1 51 30-80 13-74 (271)
309 KOG3028 Translocase of outer m 49.2 1.3E+02 0.0027 24.5 7.6 64 45-125 3-72 (313)
310 TIGR03439 methyl_EasF probable 48.6 87 0.0019 25.3 6.8 41 36-78 69-114 (319)
311 cd03024 DsbA_FrnE DsbA family, 47.1 21 0.00047 25.8 2.9 22 99-120 171-193 (201)
312 KOG1731 FAD-dependent sulfhydr 47.0 9.5 0.00021 33.4 1.0 63 44-117 59-139 (606)
313 PRK13599 putative peroxiredoxi 46.8 26 0.00055 26.6 3.3 17 48-64 35-51 (215)
314 cd03024 DsbA_FrnE DsbA family, 46.7 13 0.00029 26.9 1.7 20 46-65 1-20 (201)
315 PRK15000 peroxidase; Provision 46.4 40 0.00086 25.1 4.2 24 42-65 33-58 (200)
316 PRK13190 putative peroxiredoxi 46.1 28 0.0006 25.9 3.4 22 44-65 28-51 (202)
317 PF12689 Acid_PPase: Acid Phos 46.0 28 0.00061 25.5 3.3 75 30-113 47-134 (169)
318 PLN00020 ribulose bisphosphate 45.8 41 0.00089 28.3 4.5 66 46-111 151-220 (413)
319 KOG3170 Conserved phosducin-li 44.3 1.1E+02 0.0024 23.6 6.3 67 31-109 99-167 (240)
320 cd01520 RHOD_YbbB Member of th 44.3 71 0.0015 21.6 5.0 37 40-78 83-119 (128)
321 COG0424 Maf Nucleotide-binding 43.5 26 0.00057 26.4 2.8 22 59-80 13-36 (193)
322 PRK13189 peroxiredoxin; Provis 43.4 31 0.00067 26.2 3.3 37 42-78 34-79 (222)
323 PRK13191 putative peroxiredoxi 43.1 32 0.0007 26.0 3.3 36 43-78 33-77 (215)
324 PTZ00253 tryparedoxin peroxida 43.0 41 0.0009 24.8 3.9 34 45-78 38-80 (199)
325 cd04911 ACT_AKiii-YclM-BS_1 AC 40.2 32 0.0007 21.9 2.5 21 54-74 15-35 (76)
326 PF09413 DUF2007: Domain of un 39.4 29 0.00062 20.8 2.1 53 46-112 1-53 (67)
327 COG0041 PurE Phosphoribosylcar 38.8 50 0.0011 24.2 3.5 35 46-80 7-41 (162)
328 PF13743 Thioredoxin_5: Thiore 38.6 31 0.00068 25.1 2.6 20 48-67 2-21 (176)
329 PF02966 DIM1: Mitosis protein 38.2 72 0.0016 22.7 4.2 45 36-80 10-64 (133)
330 cd06381 PBP1_iGluR_delta_like 38.0 1.8E+02 0.0038 23.6 7.1 93 30-122 48-159 (363)
331 cd03013 PRX5_like Peroxiredoxi 37.2 77 0.0017 22.4 4.4 23 38-60 24-48 (155)
332 KOG1734 Predicted RING-contain 37.1 20 0.00042 28.7 1.3 13 50-62 269-281 (328)
333 cd03021 DsbA_GSTK DsbA family, 36.6 47 0.001 24.6 3.3 33 45-77 2-40 (209)
334 PF13364 BetaGal_dom4_5: Beta- 36.6 29 0.00062 23.4 2.0 18 101-118 61-78 (111)
335 TIGR01162 purE phosphoribosyla 35.8 49 0.0011 24.1 3.1 77 46-125 3-100 (156)
336 cd06387 PBP1_iGluR_AMPA_GluR3 35.7 1.2E+02 0.0026 24.9 5.8 88 30-123 49-146 (372)
337 cd01521 RHOD_PspE2 Member of t 35.3 91 0.002 20.3 4.3 39 37-77 58-97 (110)
338 PF02780 Transketolase_C: Tran 34.5 80 0.0017 21.2 4.0 36 43-78 9-45 (124)
339 PF07511 DUF1525: Protein of u 33.7 55 0.0012 22.6 3.0 25 99-123 79-104 (114)
340 KOG0914 Thioredoxin-like prote 33.4 28 0.00061 27.1 1.6 62 46-114 148-218 (265)
341 cd04447 DEP_BRCC3 DEP (Disheve 33.0 16 0.00034 24.3 0.2 28 2-46 21-48 (92)
342 PF11399 DUF3192: Protein of u 32.9 34 0.00073 23.2 1.8 17 100-116 78-94 (102)
343 PF03031 NIF: NLI interacting 32.4 66 0.0014 22.4 3.4 44 29-72 37-80 (159)
344 PF08599 Nbs1_C: DNA damage re 31.9 44 0.00095 20.7 2.0 33 98-136 12-45 (65)
345 KOG3027 Mitochondrial outer me 31.2 1.3E+02 0.0029 23.3 4.9 66 52-133 32-99 (257)
346 PF03575 Peptidase_S51: Peptid 30.9 53 0.0012 23.1 2.7 64 56-135 1-64 (154)
347 cd06388 PBP1_iGluR_AMPA_GluR4 30.6 2.6E+02 0.0056 22.7 7.0 95 29-123 48-146 (371)
348 PF07728 AAA_5: AAA domain (dy 30.3 86 0.0019 21.1 3.6 36 45-80 1-36 (139)
349 KOG2454 Betaine aldehyde dehyd 30.3 79 0.0017 26.9 3.8 44 34-77 207-255 (583)
350 PF13344 Hydrolase_6: Haloacid 30.2 1.6E+02 0.0034 19.3 4.7 43 30-72 16-59 (101)
351 PRK01415 hypothetical protein; 29.7 1.1E+02 0.0023 23.9 4.4 38 38-77 166-203 (247)
352 cd05564 PTS_IIB_chitobiose_lic 29.5 61 0.0013 21.1 2.6 64 55-118 14-86 (96)
353 PF14237 DUF4339: Domain of un 29.2 64 0.0014 17.9 2.3 24 107-130 4-29 (45)
354 cd01448 TST_Repeat_1 Thiosulfa 29.0 1.3E+02 0.0028 19.8 4.2 29 42-70 78-106 (122)
355 PF10087 DUF2325: Uncharacteri 28.6 1.7E+02 0.0036 18.9 5.2 42 34-75 39-82 (97)
356 KOG2893 Zn finger protein [Gen 28.3 14 0.00031 29.0 -0.7 11 50-60 9-19 (341)
357 PF08308 PEGA: PEGA domain; I 28.0 47 0.001 20.0 1.7 11 106-116 14-24 (71)
358 PF15616 TerY-C: TerY-C metal 27.6 18 0.00039 25.6 -0.3 14 48-61 74-87 (131)
359 KOG3160 Gamma-interferon induc 27.6 38 0.00082 26.1 1.5 18 43-60 40-57 (220)
360 PF03470 zf-XS: XS zinc finger 27.5 17 0.00038 20.7 -0.3 6 54-59 1-6 (43)
361 cd00755 YgdL_like Family of ac 26.8 63 0.0014 24.8 2.6 19 52-70 154-172 (231)
362 PF01522 Polysacc_deac_1: Poly 26.8 47 0.001 21.7 1.7 37 34-71 86-122 (123)
363 cd03082 TRX_Fd_NuoE_W_FDH_beta 26.8 1E+02 0.0022 19.0 3.2 18 101-118 44-61 (72)
364 PF11008 DUF2846: Protein of u 26.7 53 0.0011 22.2 2.0 18 100-117 38-55 (117)
365 PRK08118 topology modulation p 26.4 99 0.0021 22.1 3.5 33 43-75 1-33 (167)
366 smart00450 RHOD Rhodanese Homo 26.2 1.3E+02 0.0028 18.2 3.7 30 41-71 54-83 (100)
367 cd04446 DEP_DEPDC4 DEP (Dishev 26.0 26 0.00055 23.4 0.3 11 2-12 19-29 (95)
368 cd01449 TST_Repeat_2 Thiosulfa 26.0 1.7E+02 0.0037 19.0 4.4 28 42-70 77-104 (118)
369 TIGR03757 conj_TIGR03757 integ 25.9 55 0.0012 22.6 1.9 24 99-122 80-104 (113)
370 PF07908 D-aminoacyl_C: D-amin 25.8 46 0.00099 19.1 1.3 15 101-115 17-31 (48)
371 PRK09590 celB cellobiose phosp 25.7 84 0.0018 21.1 2.8 61 55-115 16-87 (104)
372 PF05711 TylF: Macrocin-O-meth 25.4 81 0.0017 24.7 3.0 51 30-80 191-242 (248)
373 PF00731 AIRC: AIR carboxylase 25.2 51 0.0011 23.8 1.7 29 51-79 10-38 (150)
374 KOG4420 Uncharacterized conser 25.1 90 0.0019 25.1 3.2 74 46-126 27-100 (325)
375 cd05565 PTS_IIB_lactose PTS_II 25.1 51 0.0011 22.0 1.6 60 56-115 16-84 (99)
376 COG5427 Uncharacterized membra 25.0 1.2E+02 0.0025 26.4 4.0 36 36-75 611-646 (684)
377 PF00004 AAA: ATPase family as 25.0 1.2E+02 0.0026 19.7 3.5 33 46-78 1-33 (132)
378 PF08874 DUF1835: Domain of un 24.9 2.2E+02 0.0047 19.0 5.1 40 37-77 80-123 (124)
379 cd01524 RHOD_Pyr_redox Member 24.5 1.8E+02 0.004 18.0 5.2 43 32-77 40-82 (90)
380 KOG1740 Predicted mitochondria 24.3 47 0.001 22.5 1.3 17 9-25 53-69 (107)
381 COG0602 NrdG Organic radical a 24.2 30 0.00064 26.2 0.4 32 45-76 22-58 (212)
382 PRK12900 secA preprotein trans 24.1 2.6E+02 0.0056 26.6 6.3 70 7-77 554-631 (1025)
383 COG1927 Mtd Coenzyme F420-depe 23.1 2.6E+02 0.0057 21.8 5.2 49 22-71 38-90 (277)
384 KOG2603 Oligosaccharyltransfer 22.9 1.4E+02 0.0029 24.5 3.9 52 46-110 64-133 (331)
385 TIGR03521 GldG gliding-associa 22.7 2.2E+02 0.0048 24.7 5.5 65 11-80 22-96 (552)
386 PF11238 DUF3039: Protein of u 22.7 47 0.001 20.1 1.0 28 37-64 18-57 (58)
387 KOG0727 26S proteasome regulat 22.5 3.2E+02 0.007 22.1 5.8 28 44-71 190-217 (408)
388 cd01523 RHOD_Lact_B Member of 22.2 2.1E+02 0.0047 17.9 4.8 38 37-77 55-92 (100)
389 cd06340 PBP1_ABC_ligand_bindin 22.0 2.1E+02 0.0045 22.5 4.9 42 31-72 56-98 (347)
390 cd08195 DHQS Dehydroquinate sy 22.0 4.2E+02 0.0091 21.2 8.3 75 43-117 24-100 (345)
391 TIGR02251 HIF-SF_euk Dullard-l 21.8 1.7E+02 0.0037 20.8 4.0 39 29-67 43-81 (162)
392 TIGR02742 TrbC_Ftype type-F co 21.7 2.9E+02 0.0064 19.3 5.0 12 98-109 66-77 (130)
393 PF02837 Glyco_hydro_2_N: Glyc 21.5 74 0.0016 22.3 2.0 21 98-118 91-111 (167)
394 cd01532 4RHOD_Repeat_1 Member 21.1 1.9E+02 0.0042 18.0 3.8 28 43-70 50-78 (92)
395 PF09214 Prd1-P2: Bacteriophag 21.0 39 0.00085 27.9 0.5 33 72-117 15-47 (560)
396 COG1139 Uncharacterized conser 20.8 1.7E+02 0.0038 25.0 4.2 49 29-77 86-136 (459)
397 KOG0629 Glutamate decarboxylas 20.8 5.1E+02 0.011 22.4 6.9 81 39-123 191-275 (510)
398 cd06389 PBP1_iGluR_AMPA_GluR2 20.7 3.1E+02 0.0066 22.1 5.7 94 30-123 43-140 (370)
399 PF14447 Prok-RING_4: Prokaryo 20.5 33 0.00072 20.6 -0.0 8 52-59 40-47 (55)
400 PRK09200 preprotein translocas 20.2 4.2E+02 0.0092 24.4 6.8 71 6-77 383-461 (790)
401 PLN02723 3-mercaptopyruvate su 20.1 3.1E+02 0.0068 21.8 5.5 40 31-70 89-130 (320)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.98 E-value=2.8e-32 Score=184.72 Aligned_cols=99 Identities=51% Similarity=0.922 Sum_probs=88.3
Q ss_pred HHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeec
Q 032422 37 IQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGG 116 (141)
Q Consensus 37 l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG 116 (141)
+++++++++|+||++++||||++++++|+++|++|+++|||.++++. +..+.+.+.+|+.|+|+|||||++|||
T Consensus 1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~------~~~~~l~~~tg~~tvP~Vfi~g~~iGG 74 (99)
T TIGR02189 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGK------DIENALSRLGCSPAVPAVFVGGKLVGG 74 (99)
T ss_pred ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHH------HHHHHHHHhcCCCCcCeEEECCEEEcC
Confidence 36789999999999999999999999999999999999999877542 123333356899999999999999999
Q ss_pred cHHHHHHHhCCCcHHHHHhcCCccC
Q 032422 117 LESLVALHIGGHLVPKLVEIGALWV 141 (141)
Q Consensus 117 ~del~~l~~~g~L~~~L~~~g~~~~ 141 (141)
++++.+++++|+|+++|+++|++|+
T Consensus 75 ~ddl~~l~~~G~L~~~l~~~~~~~~ 99 (99)
T TIGR02189 75 LENVMALHISGSLVPMLKQAGALWL 99 (99)
T ss_pred HHHHHHHHHcCCHHHHHHHhCcccC
Confidence 9999999999999999999999986
No 2
>PHA03050 glutaredoxin; Provisional
Probab=99.97 E-value=4.7e-31 Score=181.34 Aligned_cols=102 Identities=19% Similarity=0.366 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCC---CceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE
Q 032422 33 SEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGV---HPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI 109 (141)
Q Consensus 33 ~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi---~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI 109 (141)
+++++++++++++|+||+++|||||.+|+++|++.++ +|+++||+....+. +..+++.+.+|++|||+|||
T Consensus 2 ~~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~------~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 2 AEEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPEN------ELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred hHHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCH------HHHHHHHHHcCCCCcCEEEE
Confidence 3578999999999999999999999999999999999 79999999744322 13334445789999999999
Q ss_pred CCeEeeccHHHHHHHhCCCcHHHHHhcCCcc
Q 032422 110 GGTCVGGLESLVALHIGGHLVPKLVEIGALW 140 (141)
Q Consensus 110 ~G~~iGG~del~~l~~~g~L~~~L~~~g~~~ 140 (141)
||++|||++++++++++|+|.++|+++|+++
T Consensus 76 ~g~~iGG~ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 76 GKTSIGGYSDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred CCEEEeChHHHHHHHHcCCHHHHHHHccccc
Confidence 9999999999999999999999999999985
No 3
>PRK10824 glutaredoxin-4; Provisional
Probab=99.97 E-value=2e-30 Score=179.67 Aligned_cols=100 Identities=20% Similarity=0.357 Sum_probs=89.7
Q ss_pred hHHHHHHHHhcCCCEEEEEcC-----CChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCE
Q 032422 32 SSEARIQRLISEHPVIIFSRS-----SCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPA 106 (141)
Q Consensus 32 ~~~~~l~~~~~~~~Vvvy~~~-----~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~ 106 (141)
...+++++++++++|+||+++ +||||++|+++|+++|++|.++||+.++. +++++. +.+|++||||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~------~~~~l~---~~sg~~TVPQ 73 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPD------IRAELP---KYANWPTFPQ 73 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHH------HHHHHH---HHhCCCCCCe
Confidence 467899999999999999995 99999999999999999999999986542 234444 4799999999
Q ss_pred EEECCeEeeccHHHHHHHhCCCcHHHHHhcCCcc
Q 032422 107 VFIGGTCVGGLESLVALHIGGHLVPKLVEIGALW 140 (141)
Q Consensus 107 VfI~G~~iGG~del~~l~~~g~L~~~L~~~g~~~ 140 (141)
|||||+||||+|++.+++.+|+|+++|+++|+++
T Consensus 74 IFI~G~~IGG~ddl~~l~~~G~L~~lL~~~~~~~ 107 (115)
T PRK10824 74 LWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY 107 (115)
T ss_pred EEECCEEEcChHHHHHHHHCCCHHHHHHHHHhhh
Confidence 9999999999999999999999999999999864
No 4
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-29 Score=173.20 Aligned_cols=102 Identities=46% Similarity=0.825 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCe
Q 032422 33 SEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGT 112 (141)
Q Consensus 33 ~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~ 112 (141)
..++++++++.++||||++++||||.+++.+|...++++..+++|.++++.. +|+++.+ .+|++|||+|||||+
T Consensus 3 ~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~e---iq~~l~~---~tg~~tvP~vFI~Gk 76 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSE---IQKALKK---LTGQRTVPNVFIGGK 76 (104)
T ss_pred HHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHH---HHHHHHH---hcCCCCCCEEEECCE
Confidence 4568999999999999999999999999999999999999999999987652 6777764 689999999999999
Q ss_pred EeeccHHHHHHHhCCCcHHHHHhcCCcc
Q 032422 113 CVGGLESLVALHIGGHLVPKLVEIGALW 140 (141)
Q Consensus 113 ~iGG~del~~l~~~g~L~~~L~~~g~~~ 140 (141)
+|||.+++++++.+|+|.++|+.+|++|
T Consensus 77 ~iGG~~dl~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 77 FIGGASDLMALHKSGELVPLLKEAGALW 104 (104)
T ss_pred EEcCHHHHHHHHHcCCHHHHHHHhhccC
Confidence 9999999999999999999999999987
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.95 E-value=1.1e-27 Score=161.64 Aligned_cols=91 Identities=20% Similarity=0.363 Sum_probs=80.2
Q ss_pred HHHHHHHhcCCCEEEEEc-----CCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEE
Q 032422 34 EARIQRLISEHPVIIFSR-----SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVF 108 (141)
Q Consensus 34 ~~~l~~~~~~~~Vvvy~~-----~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~Vf 108 (141)
.+++++++++++|+||++ ++||||.+|+++|+++|++|+++||+.++. ..+++.+.+|+.|+|+||
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~---------~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPE---------IRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHH---------HHHHHHHHhCCCCCCEEE
Confidence 468899999999999998 899999999999999999999999975431 233344468999999999
Q ss_pred ECCeEeeccHHHHHHHhCCCcHHHH
Q 032422 109 IGGTCVGGLESLVALHIGGHLVPKL 133 (141)
Q Consensus 109 I~G~~iGG~del~~l~~~g~L~~~L 133 (141)
|||++|||+|++.+++++|+|.++|
T Consensus 73 i~g~~iGG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 73 VKGEFVGGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred ECCEEEeChHHHHHHHHCcChHHhC
Confidence 9999999999999999999999865
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.93 E-value=9.5e-26 Score=150.06 Aligned_cols=85 Identities=24% Similarity=0.472 Sum_probs=74.5
Q ss_pred HHHHhcCCCEEEEEc-----CCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECC
Q 032422 37 IQRLISEHPVIIFSR-----SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGG 111 (141)
Q Consensus 37 l~~~~~~~~Vvvy~~-----~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G 111 (141)
+++++++++||||++ ++||||.+++++|++.|++|+.+|++.++. ..+++.+.+|+.|+|+|||||
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~---------~~~~l~~~~g~~tvP~vfi~g 71 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEE---------VRQGLKEYSNWPTFPQLYVNG 71 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHH---------HHHHHHHHhCCCCCCEEEECC
Confidence 467899999999998 599999999999999999999999986531 233333468999999999999
Q ss_pred eEeeccHHHHHHHhCCCcH
Q 032422 112 TCVGGLESLVALHIGGHLV 130 (141)
Q Consensus 112 ~~iGG~del~~l~~~g~L~ 130 (141)
++|||++++.+++++|+|+
T Consensus 72 ~~iGG~~~l~~l~~~g~L~ 90 (90)
T cd03028 72 ELVGGCDIVKEMHESGELQ 90 (90)
T ss_pred EEEeCHHHHHHHHHcCCcC
Confidence 9999999999999999985
No 7
>PTZ00062 glutaredoxin; Provisional
Probab=99.92 E-value=1.4e-24 Score=164.02 Aligned_cols=97 Identities=18% Similarity=0.328 Sum_probs=86.2
Q ss_pred hhHHHHHHHHhcCCCEEEEEc-----CCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCC
Q 032422 31 ESSEARIQRLISEHPVIIFSR-----SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAP 105 (141)
Q Consensus 31 ~~~~~~l~~~~~~~~Vvvy~~-----~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP 105 (141)
+++.++++++++.++|+||++ |+||||++++++|++.+++|..+||+.+++ ..+.+.+.+|++|+|
T Consensus 100 ~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~---------~~~~l~~~sg~~TvP 170 (204)
T PTZ00062 100 EDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPD---------LREELKVYSNWPTYP 170 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHH---------HHHHHHHHhCCCCCC
Confidence 568899999999999999999 589999999999999999999999986542 233334578999999
Q ss_pred EEEECCeEeeccHHHHHHHhCCCcHHHHHhc
Q 032422 106 AVFIGGTCVGGLESLVALHIGGHLVPKLVEI 136 (141)
Q Consensus 106 ~VfI~G~~iGG~del~~l~~~g~L~~~L~~~ 136 (141)
+|||||++|||+|++++++++|+|.++|.+.
T Consensus 171 qVfI~G~~IGG~d~l~~l~~~G~L~~~l~~~ 201 (204)
T PTZ00062 171 QLYVNGELIGGHDIIKELYESNSLRKVIPDD 201 (204)
T ss_pred eEEECCEEEcChHHHHHHHHcCChhhhhhhh
Confidence 9999999999999999999999999998763
No 8
>PRK10638 glutaredoxin 3; Provisional
Probab=99.91 E-value=8.6e-24 Score=138.33 Aligned_cols=83 Identities=28% Similarity=0.476 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 43 EHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
|.+|++|++++||||++++.+|++.|++|+.+||+.++. ..+++.+.+|..++|+||+||++|||++++.+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~---------~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~ 71 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAA---------KREEMIKRSGRTTVPQIFIDAQHIGGCDDLYA 71 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH---------HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHH
Confidence 347999999999999999999999999999999986542 12233346899999999999999999999999
Q ss_pred HHhCCCcHHHHH
Q 032422 123 LHIGGHLVPKLV 134 (141)
Q Consensus 123 l~~~g~L~~~L~ 134 (141)
++.+|+|.++|+
T Consensus 72 ~~~~g~l~~~~~ 83 (83)
T PRK10638 72 LDARGGLDPLLK 83 (83)
T ss_pred HHHcCCHHHHhC
Confidence 999999999875
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.90 E-value=1.4e-23 Score=135.63 Aligned_cols=79 Identities=32% Similarity=0.504 Sum_probs=69.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHHh
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHI 125 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~~ 125 (141)
|+||++++||+|.+|+++|++.|++|+.+|++.++. .++++.+.+|+.++|+|||||++|||++++.++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~---------~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPA---------LRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHH---------HHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHH
Confidence 689999999999999999999999999999987652 23333346889999999999999999999999999
Q ss_pred CCCcHHHH
Q 032422 126 GGHLVPKL 133 (141)
Q Consensus 126 ~g~L~~~L 133 (141)
+|+|+.+|
T Consensus 72 ~g~l~~~l 79 (79)
T TIGR02181 72 EGKLDPLL 79 (79)
T ss_pred cCChhhhC
Confidence 99998764
No 10
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.8e-22 Score=131.73 Aligned_cols=78 Identities=32% Similarity=0.574 Sum_probs=66.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALH 124 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~ 124 (141)
.|+||++++||||.+|+++|++.|++|++++++.++... .++..+ +.+|.+|||+|||||++|||++++.++.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~----~~~~~~---~~~g~~tvP~I~i~~~~igg~~d~~~~~ 74 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEE----AREMVK---RGKGQRTVPQIFIGGKHVGGCDDLDALE 74 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHH----HHHHHH---HhCCCCCcCEEEECCEEEeCcccHHHHH
Confidence 689999999999999999999999999999999877321 122333 3458999999999999999999999998
Q ss_pred hCCCc
Q 032422 125 IGGHL 129 (141)
Q Consensus 125 ~~g~L 129 (141)
..+.|
T Consensus 75 ~~~~l 79 (80)
T COG0695 75 AKGKL 79 (80)
T ss_pred hhccC
Confidence 88876
No 11
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.4e-22 Score=132.92 Aligned_cols=98 Identities=22% Similarity=0.363 Sum_probs=87.6
Q ss_pred hhHHHHHHHHhcCCCEEEEEc-----CCChhHHHHHHHHHhcC-CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCC
Q 032422 31 ESSEARIQRLISEHPVIIFSR-----SSCCMCHVMKTLFATIG-VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPA 104 (141)
Q Consensus 31 ~~~~~~l~~~~~~~~Vvvy~~-----~~Cp~C~~ak~~L~~~g-i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tv 104 (141)
.+..+++++.++.++|++|.| |-|.|+.++.++|..+| ++|..+||-.+++ .++.+++.++|+|+
T Consensus 2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~e---------iR~~lk~~s~WPT~ 72 (105)
T COG0278 2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPE---------IRQGLKEYSNWPTF 72 (105)
T ss_pred chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHH---------HHhccHhhcCCCCC
Confidence 357889999999999999998 45999999999999999 8999999987652 34555568999999
Q ss_pred CEEEECCeEeeccHHHHHHHhCCCcHHHHHhcC
Q 032422 105 PAVFIGGTCVGGLESLVALHIGGHLVPKLVEIG 137 (141)
Q Consensus 105 P~VfI~G~~iGG~del~~l~~~g~L~~~L~~~g 137 (141)
||+||+|++|||+|-+.+++++|+|+.+|++++
T Consensus 73 PQLyi~GEfvGG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 73 PQLYVNGEFVGGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred ceeeECCEEeccHHHHHHHHHcchHHHHHHhcC
Confidence 999999999999999999999999999999875
No 12
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.88 E-value=3e-22 Score=144.26 Aligned_cols=86 Identities=20% Similarity=0.323 Sum_probs=72.3
Q ss_pred CEEEEEcC------CChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhh-CCCCCCCCCEEEECCeEeecc
Q 032422 45 PVIIFSRS------SCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHAD-SPRNPAPAPAVFIGGTCVGGL 117 (141)
Q Consensus 45 ~Vvvy~~~------~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~-~~~g~~tvP~VfI~G~~iGG~ 117 (141)
+|+||++| +||+|.+|+++|++++|+|+++||+.++. .+++++++. ..+++.++|+|||||++|||+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~------~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~ 74 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSG------FREELRELLGAELKAVSLPRVFVDGRYLGGA 74 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHH------HHHHHHHHhCCCCCCCCCCEEEECCEEEecH
Confidence 58999999 99999999999999999999999997652 122333321 123469999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHhc
Q 032422 118 ESLVALHIGGHLVPKLVEI 136 (141)
Q Consensus 118 del~~l~~~g~L~~~L~~~ 136 (141)
+++.+++++|+|.++|+.+
T Consensus 75 del~~L~e~G~L~~lL~~~ 93 (147)
T cd03031 75 EEVLRLNESGELRKLLKGI 93 (147)
T ss_pred HHHHHHHHcCCHHHHHhhc
Confidence 9999999999999999875
No 13
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.88 E-value=2.3e-22 Score=130.35 Aligned_cols=82 Identities=32% Similarity=0.527 Sum_probs=70.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCC--ceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVH--PTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~--~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l 123 (141)
|++|+++|||+|++++++|++.+++ |+.++++..+.... +++++ .+.+|..++|+||+||++|||++++.++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~---~~~~l---~~~~g~~~vP~v~i~g~~igg~~~~~~~ 74 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSE---IQDYL---EEITGQRTVPNIFINGKFIGGCSDLLAL 74 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHH---HHHHH---HHHhCCCCCCeEEECCEEEcCHHHHHHH
Confidence 6899999999999999999999999 99999987653321 12233 3468999999999999999999999999
Q ss_pred HhCCCcHHHH
Q 032422 124 HIGGHLVPKL 133 (141)
Q Consensus 124 ~~~g~L~~~L 133 (141)
+++|+|.++|
T Consensus 75 ~~~g~l~~~~ 84 (84)
T TIGR02180 75 YKSGKLAELL 84 (84)
T ss_pred HHcCChhhhC
Confidence 9999999764
No 14
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.87 E-value=7.9e-22 Score=125.83 Aligned_cols=74 Identities=27% Similarity=0.468 Sum_probs=63.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCC-CCCEEEECCeEeeccHHHHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPA-PAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~-tvP~VfI~G~~iGG~del~~l 123 (141)
+|++|++++||+|.+|+++|+++|++|+++||+.++. ..+++.+.+|.. ++|+|||||++|||++++.++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~---------~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~ 71 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPA---------LREEMINRSGGRRTVPQIFIGDVHIGGCDDLYAL 71 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHH---------HHHHHHHHhCCCCccCEEEECCEEEeChHHHHHH
Confidence 5899999999999999999999999999999987532 223333456766 999999999999999999999
Q ss_pred HhCC
Q 032422 124 HIGG 127 (141)
Q Consensus 124 ~~~g 127 (141)
+++|
T Consensus 72 ~~~g 75 (75)
T cd03418 72 ERKG 75 (75)
T ss_pred HhCc
Confidence 9886
No 15
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.86 E-value=8.2e-22 Score=127.49 Aligned_cols=81 Identities=41% Similarity=0.754 Sum_probs=70.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALH 124 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~ 124 (141)
+|++|+++|||+|.+++++|++.+++|+.++++.++... +...++.+.+|..++|+||++|+++||++++.++.
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~ 74 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGS------EIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALH 74 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChH------HHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence 589999999999999999999999999999999876422 12233334689999999999999999999999999
Q ss_pred hCCCcHH
Q 032422 125 IGGHLVP 131 (141)
Q Consensus 125 ~~g~L~~ 131 (141)
++|+|++
T Consensus 75 ~~g~l~~ 81 (82)
T cd03419 75 KSGKLVK 81 (82)
T ss_pred HcCCccC
Confidence 9999975
No 16
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.86 E-value=1.2e-21 Score=127.20 Aligned_cols=75 Identities=24% Similarity=0.437 Sum_probs=63.9
Q ss_pred HhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHH
Q 032422 40 LISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLES 119 (141)
Q Consensus 40 ~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~de 119 (141)
+.++++|+||+++|||+|++++++|+++|++|+.+|++.++.. .++. +.+|..++|+||+||++|||+++
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-------~~~~---~~~g~~~vP~i~i~g~~igG~~~ 73 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARG-------RSLR---AVTGATTVPQVFIGGKLIGGSDE 73 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHH-------HHHH---HHHCCCCcCeEEECCEEEcCHHH
Confidence 4567899999999999999999999999999999999875432 1222 35899999999999999999999
Q ss_pred HHHHH
Q 032422 120 LVALH 124 (141)
Q Consensus 120 l~~l~ 124 (141)
+.+..
T Consensus 74 l~~~l 78 (79)
T TIGR02190 74 LEAYL 78 (79)
T ss_pred HHHHh
Confidence 88753
No 17
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.85 E-value=3e-21 Score=122.80 Aligned_cols=70 Identities=23% Similarity=0.423 Sum_probs=60.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALH 124 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~ 124 (141)
+|+||++++||+|.+|+++|+++|++|+.+|++.++.. .++. ..+|..++|+|||||++|||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~-------~~~~---~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITG-------RSLR---AVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhH-------HHHH---HHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 69999999999999999999999999999999876521 1232 3579999999999999999999998764
No 18
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.85 E-value=2.1e-21 Score=123.97 Aligned_cols=71 Identities=25% Similarity=0.444 Sum_probs=61.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALH 124 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~ 124 (141)
+|++|++++||+|++|+++|++.|++|+.+||+.++. ..+++.+.+|..++|+||+||++|||++++.+++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~---------~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPE---------RKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHH---------HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 6899999999999999999999999999999987653 1223334688899999999999999999998875
No 19
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.83 E-value=2.1e-20 Score=154.19 Aligned_cols=92 Identities=23% Similarity=0.390 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHh--hhCCCCCCCCCEEEECCeEeeccHHH
Q 032422 43 EHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAH--ADSPRNPAPAPAVFIGGTCVGGLESL 120 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~--l~~~~g~~tvP~VfI~G~~iGG~del 120 (141)
+.+|+||++++||+|++||++|++.||+|+++||+.++.... +.....+ +...+|..|||+|||||++|||++++
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~---~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l 77 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAE---FYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNL 77 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHH---HHHHHhhccccccCCCCccCeEEECCEEEeCchHH
Confidence 357999999999999999999999999999999996653211 1111111 23357899999999999999999999
Q ss_pred HHHHhCCCcHHHHHhcCCc
Q 032422 121 VALHIGGHLVPKLVEIGAL 139 (141)
Q Consensus 121 ~~l~~~g~L~~~L~~~g~~ 139 (141)
.+ .+|+|.++++..|+.
T Consensus 78 ~~--~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 78 MA--RAGEVIARVKGSSLT 94 (410)
T ss_pred HH--HhCCHHHHhcCCccc
Confidence 87 899999999998864
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.82 E-value=5.6e-20 Score=121.26 Aligned_cols=73 Identities=23% Similarity=0.415 Sum_probs=58.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC-----CCceEEEecCCCCccCCcccHHHHHhhhCCCCC--CCCCEEEECCeEeeccH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIG-----VHPTVIELDDHEISALPLVDHDESAHADSPRNP--APAPAVFIGGTCVGGLE 118 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~g-----i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~--~tvP~VfI~G~~iGG~d 118 (141)
|+||+++|||||.+|+++|++++ ++|+.+|++.+... ++++.+ .+|. .+||+|||||++|||++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~------~~~l~~---~~g~~~~tVP~ifi~g~~igG~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGIS------KADLEK---TVGKPVETVPQIFVDEKHVGGCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHH------HHHHHH---HhCCCCCCcCeEEECCEEecCHH
Confidence 78999999999999999999984 56888888753311 123332 4554 89999999999999999
Q ss_pred HHHHHHhCC
Q 032422 119 SLVALHIGG 127 (141)
Q Consensus 119 el~~l~~~g 127 (141)
++.++.+++
T Consensus 73 dl~~~~~~~ 81 (86)
T TIGR02183 73 DFEQLVKEN 81 (86)
T ss_pred HHHHHHHhc
Confidence 999987764
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.82 E-value=6e-20 Score=120.46 Aligned_cols=73 Identities=21% Similarity=0.349 Sum_probs=59.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHh-----cCCCceEEEecCCCCccCCcccHHHHHhhhCCCC--CCCCCEEEECCeEeecc
Q 032422 45 PVIIFSRSSCCMCHVMKTLFAT-----IGVHPTVIELDDHEISALPLVDHDESAHADSPRN--PAPAPAVFIGGTCVGGL 117 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~-----~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g--~~tvP~VfI~G~~iGG~ 117 (141)
+|+||+++|||+|++|+++|++ .+++|+.+|++.++.. .+++.+ .+| ..++|+|||||++|||+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~------~~el~~---~~~~~~~~vP~ifi~g~~igg~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGIS------KADLEK---TVGKPVETVPQIFVDQKHIGGC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHH------HHHHHH---HHCCCCCcCCEEEECCEEEcCH
Confidence 6899999999999999999999 7999999999865421 113332 344 48999999999999999
Q ss_pred HHHHHHHhC
Q 032422 118 ESLVALHIG 126 (141)
Q Consensus 118 del~~l~~~ 126 (141)
+++.++.+.
T Consensus 73 ~~~~~~~~~ 81 (85)
T PRK11200 73 TDFEAYVKE 81 (85)
T ss_pred HHHHHHHHH
Confidence 999888654
No 22
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.5e-19 Score=133.50 Aligned_cols=93 Identities=23% Similarity=0.439 Sum_probs=83.6
Q ss_pred HHHHHHhcCCCEEEEEcC-----CChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE
Q 032422 35 ARIQRLISEHPVIIFSRS-----SCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI 109 (141)
Q Consensus 35 ~~l~~~~~~~~Vvvy~~~-----~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI 109 (141)
+.++++++.++|++|.|. .|.|.+++..+|.++|++|..+||-.+++ .++.+++.+.|+|+||+||
T Consensus 130 ~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~Dee---------lRqglK~fSdWPTfPQlyI 200 (227)
T KOG0911|consen 130 NRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEE---------LRQGLKEFSDWPTFPQLYV 200 (227)
T ss_pred HHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHH---------HHHHhhhhcCCCCccceeE
Confidence 389999999999999984 59999999999999999999999987662 3444556789999999999
Q ss_pred CCeEeeccHHHHHHHhCCCcHHHHHhc
Q 032422 110 GGTCVGGLESLVALHIGGHLVPKLVEI 136 (141)
Q Consensus 110 ~G~~iGG~del~~l~~~g~L~~~L~~~ 136 (141)
+|+++||+|-+.+++++|+|+..|+++
T Consensus 201 ~GEFiGGlDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 201 KGEFIGGLDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred CCEeccCcHHHHHHhhcccHHHHhhcC
Confidence 999999999999999999999999874
No 23
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.78 E-value=1.3e-18 Score=108.38 Aligned_cols=71 Identities=28% Similarity=0.550 Sum_probs=61.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALH 124 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~ 124 (141)
+|++|++++||+|++++.+|++.+++|..+|++.++. ..+++.+.+|..++|++|+||+++||++++.+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~---------~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE---------LREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH---------HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 5899999999999999999999999999999987653 1223334688899999999999999999998875
No 24
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.75 E-value=6.1e-18 Score=113.06 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=67.5
Q ss_pred EEEEEcCC------ChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCC----CCCCCEEEECCeEee
Q 032422 46 VIIFSRSS------CCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRN----PAPAPAVFIGGTCVG 115 (141)
Q Consensus 46 Vvvy~~~~------Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g----~~tvP~VfI~G~~iG 115 (141)
|+||+++- =-.|.+++.+|+..+|+|+++||+.++. .+++|.+.+| ..++|||||||+|||
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~---------~r~em~~~~~~~~g~~tvPQIFi~~~~iG 72 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEE---------NRQWMRENVPNENGKPLPPQIFNGDEYCG 72 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHH---------HHHHHHHhcCCCCCCCCCCEEEECCEEee
Confidence 67888764 3689999999999999999999997653 3444544554 589999999999999
Q ss_pred ccHHHHHHHhCCCcHHHHH
Q 032422 116 GLESLVALHIGGHLVPKLV 134 (141)
Q Consensus 116 G~del~~l~~~g~L~~~L~ 134 (141)
|+|++.+++++|+|.++|+
T Consensus 73 g~ddl~~l~e~g~L~~lLk 91 (92)
T cd03030 73 DYEAFFEAKENNTLEEFLK 91 (92)
T ss_pred CHHHHHHHHhCCCHHHHhC
Confidence 9999999999999999885
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.74 E-value=3.7e-18 Score=104.96 Aligned_cols=60 Identities=22% Similarity=0.517 Sum_probs=51.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEe
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCV 114 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~i 114 (141)
|++|++++||+|.+++++|++.|++|+++||+.++. .++++. +.+|..++|+|||||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~------~~~~l~---~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEE------AREELK---ELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHH------HHHHHH---HHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchh------HHHHHH---HHcCCCccCEEEECCEEC
Confidence 789999999999999999999999999999998762 123343 346999999999999986
No 26
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.69 E-value=1.7e-16 Score=103.69 Aligned_cols=64 Identities=20% Similarity=0.413 Sum_probs=55.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLE 118 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~d 118 (141)
+|++|++++||+|++++++|++.|++|+++||+.++. ..+++.. .|..++|+|+++|..++||+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~---------~~~~~~~-~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPE---------AAETLRA-QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHH---------HHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence 6899999999999999999999999999999997652 2222322 58899999999999999996
No 27
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.68 E-value=1.4e-16 Score=101.44 Aligned_cols=64 Identities=17% Similarity=0.419 Sum_probs=53.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCe-EeeccHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGT-CVGGLES 119 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~-~iGG~de 119 (141)
|+||++++||+|++++++|++.|++|+.+||+.++.. .+.+. ..|..+||+||++|. ++|||+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~------~~~~~----~~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEA------IDYVK----AQGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHH------HHHHH----HcCCcccCEEEECCCcEEeccCH
Confidence 5799999999999999999999999999999976532 12333 258899999999775 9999974
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.48 E-value=1.2e-13 Score=86.32 Aligned_cols=66 Identities=15% Similarity=0.329 Sum_probs=54.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLES 119 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~de 119 (141)
+|++|+.+|||+|++++.+|++.+++|..+|++.++.. .+++.+..|..++|+++++|+.++|++.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~---------~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAA---------REEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHH---------HHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 48899999999999999999999999999999865421 1222235788999999999999999853
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.43 E-value=7.1e-13 Score=82.66 Aligned_cols=66 Identities=18% Similarity=0.430 Sum_probs=54.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLES 119 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~de 119 (141)
+|++|+.+|||+|.+++.+|++.+++|..++++.++.. .+.+. +.++..++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~------~~~~~---~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEA------LEELK---KLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHH------HHHHH---HHcCCcccCEEEECCEEEecCCH
Confidence 48999999999999999999999999999999864321 12333 34678999999999999999974
No 30
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.36 E-value=1.8e-12 Score=80.66 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=46.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEee
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI-----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVG 115 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~-----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iG 115 (141)
.|++|+++|||+|.+++++|++. ++++..+|++..++ +. +..|..++|++++||++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----------l~---~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----------LA---DEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----------HH---HHcCCcccCEEEECCEEEE
Confidence 58999999999999999999875 57777777765431 11 2478899999999999875
No 31
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.36 E-value=2e-12 Score=81.94 Aligned_cols=65 Identities=14% Similarity=0.338 Sum_probs=50.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCC-CCCCCCEEEE-CCeEeeccH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPR-NPAPAPAVFI-GGTCVGGLE 118 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~-g~~tvP~VfI-~G~~iGG~d 118 (141)
+|++|+.+|||+|++++.+|++.+++|+.+|++..+.. .+.+. +.+ |..++|++++ ||+.+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~------~~~~~---~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGA------ADRVV---SVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhH------HHHHH---HHhCCCceeCEEEECCCeEecCCC
Confidence 58999999999999999999999999999999876532 12332 244 8899999977 567776543
No 32
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.7e-12 Score=99.75 Aligned_cols=88 Identities=22% Similarity=0.361 Sum_probs=72.7
Q ss_pred CCCEEEEEcC------CChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCC-CCCCCCCEEEECCeEee
Q 032422 43 EHPVIIFSRS------SCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSP-RNPAPAPAVFIGGTCVG 115 (141)
Q Consensus 43 ~~~Vvvy~~~------~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~-~g~~tvP~VfI~G~~iG 115 (141)
.+.||||+++ +.-.|..++.+|+..+|.|.+.||..+.. ..++++++... ....+.|+|||+|++||
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~------fr~EL~~~lg~~~~~~~LPrVFV~GryIG 203 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSE------FREELQELLGEDEKAVSLPRVFVKGRYIG 203 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHH------HHHHHHHHHhcccccCccCeEEEccEEec
Confidence 5689999986 47899999999999999999999988662 12334433222 34678999999999999
Q ss_pred ccHHHHHHHhCCCcHHHHHhc
Q 032422 116 GLESLVALHIGGHLVPKLVEI 136 (141)
Q Consensus 116 G~del~~l~~~g~L~~~L~~~ 136 (141)
|.+++++|++.|+|.++|+..
T Consensus 204 gaeeV~~LnE~GkL~~lL~~~ 224 (281)
T KOG2824|consen 204 GAEEVVRLNEEGKLGKLLKGI 224 (281)
T ss_pred cHHHhhhhhhcchHHHHHhcC
Confidence 999999999999999999864
No 33
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.09 E-value=3.9e-10 Score=74.76 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=56.5
Q ss_pred hHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc-----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCE
Q 032422 32 SSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATI-----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPA 106 (141)
Q Consensus 32 ~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~-----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~ 106 (141)
+.++.++++-+...|.+|+.+|||+|..+.+++++. ++++..+|++..++ ..+ ..|..++|.
T Consensus 2 ~~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e---------~a~----~~~V~~vPt 68 (89)
T cd03026 2 DLLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD---------EVE----ERGIMSVPA 68 (89)
T ss_pred hHHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH---------HHH----HcCCccCCE
Confidence 356778887788899999999999999999999764 57788888875542 122 478999999
Q ss_pred EEECCeEee
Q 032422 107 VFIGGTCVG 115 (141)
Q Consensus 107 VfI~G~~iG 115 (141)
+++||+.++
T Consensus 69 ~vidG~~~~ 77 (89)
T cd03026 69 IFLNGELFG 77 (89)
T ss_pred EEECCEEEE
Confidence 999998664
No 34
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.08 E-value=5.1e-10 Score=75.68 Aligned_cols=81 Identities=12% Similarity=0.145 Sum_probs=56.9
Q ss_pred CEEEEEcCCC------hhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCC---------CCCCCCEEEE
Q 032422 45 PVIIFSRSSC------CMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPR---------NPAPAPAVFI 109 (141)
Q Consensus 45 ~Vvvy~~~~C------p~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~---------g~~tvP~VfI 109 (141)
.|.||+++.- ..|.++..+|+..+|+|+.+||..++.. ++.|++.. |..-.|+||.
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~---------r~~mr~~~g~~~~~~~~~~~lpPqiF~ 72 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEA---------RQWMRENAGPEEKDPGNGKPLPPQIFN 72 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHH---------HHHHHHHT--CCCS-TSTT--S-EEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHH---------HHHHHHhccccccCCCCCCCCCCEEEe
Confidence 4677876542 5678999999999999999999985532 22232222 3345589999
Q ss_pred CCeEeeccHHHHHHHhCCCcHHHHH
Q 032422 110 GGTCVGGLESLVALHIGGHLVPKLV 134 (141)
Q Consensus 110 ~G~~iGG~del~~l~~~g~L~~~L~ 134 (141)
||+++|+++++.++.+.++|.+.|+
T Consensus 73 ~~~Y~Gdye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 73 GDEYCGDYEDFEEANENGELEEFLK 97 (99)
T ss_dssp TTEEEEEHHHHHHHHCTT-HHHHHT
T ss_pred CCEEEeeHHHHHHHHhhCHHHHHhC
Confidence 9999999999999999999998885
No 35
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.99 E-value=4.9e-09 Score=63.82 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=54.5
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
.+|+.++||+|.+++.+|+..|++|+.++++..+... ..+. +.++..++|+++.+|..+++...+..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~------~~~~---~~~~~~~~P~l~~~~~~~~es~~I~~ 68 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQ------EEFL---ALNPLGKVPVLEDGGLVLTESLAILE 68 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCC------HHHH---hcCCCCCCCEEEECCEEEEcHHHHHH
Confidence 6899999999999999999999999999998654321 1122 36788999999999999988876554
No 36
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.96 E-value=6.4e-09 Score=66.22 Aligned_cols=67 Identities=12% Similarity=0.287 Sum_probs=52.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEEC----CeEeeccHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIG----GTCVGGLESL 120 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~----G~~iGG~del 120 (141)
++.+|+.++||+|++++.+|...|++|+.++++... ...++ ..+..++|+++++ |..+.....+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~--------~~~~~----~~~~~~vP~l~~~~~~~~~~l~eS~~I 68 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS--------RKEIK----WSSYKKVPILRVESGGDGQQLVDSSVI 68 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh--------HHHHH----HhCCCccCEEEECCCCCccEEEcHHHH
Confidence 578999999999999999999999999999885322 11232 3677899999987 6777777666
Q ss_pred HHH
Q 032422 121 VAL 123 (141)
Q Consensus 121 ~~l 123 (141)
.+.
T Consensus 69 ~~y 71 (77)
T cd03040 69 IST 71 (77)
T ss_pred HHH
Confidence 554
No 37
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.93 E-value=6.5e-09 Score=66.56 Aligned_cols=70 Identities=7% Similarity=0.135 Sum_probs=52.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE--CCeEeeccHHHHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI--GGTCVGGLESLVAL 123 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI--~G~~iGG~del~~l 123 (141)
+++|+.++||+|.+++.+|+..|++|+.++++..+.. .+.+. +.++..++|++.. +|..+.+...+.+.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~------~~~~~---~~~p~~~vP~l~~~~~~~~l~es~~I~~y 72 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPK------RDKFL---EKGGKVQVPYLVDPNTGVQMFESADIVKY 72 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHH------HHHHH---HhCCCCcccEEEeCCCCeEEEcHHHHHHH
Confidence 6799999999999999999999999999998643211 11222 3577889999977 35677777766654
Q ss_pred H
Q 032422 124 H 124 (141)
Q Consensus 124 ~ 124 (141)
.
T Consensus 73 L 73 (77)
T cd03041 73 L 73 (77)
T ss_pred H
Confidence 3
No 38
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.93 E-value=5.5e-09 Score=65.57 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=53.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEEC-CeEeeccHHHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIG-GTCVGGLESLVALH 124 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~-G~~iGG~del~~l~ 124 (141)
.+|+.++||||.+++-+|...|++|+.+.++..+.. ..++ ..+..++|+++.+ |..+++...+.+..
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-------~~~~----~~~~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA-------TPIR----MIGAKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH-------HHHH----hcCCCccCEEEeCCCeEeehHHHHHHHH
Confidence 489999999999999999999999999888743211 1222 4677899999997 88999988877654
No 39
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.83 E-value=2.2e-08 Score=63.98 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=41.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHh----cCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCe-Eeecc
Q 032422 45 PVIIFSRSSCCMCHVMKTLFAT----IGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGT-CVGGL 117 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~----~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~-~iGG~ 117 (141)
.|++|+.+|||+|+.++..|++ .+..+..+.||.+... +..+ ..|..++|+++++|+ .+-|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-------~~~~----~~~v~~vPt~~~~g~~~~~G~ 68 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-------QKAM----EYGIMAVPAIVINGDVEFIGA 68 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-------HHHH----HcCCccCCEEEECCEEEEecC
Confidence 5889999999999999999875 3433444444432211 1222 478899999999997 33343
No 40
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.76 E-value=1.5e-08 Score=64.94 Aligned_cols=55 Identities=20% Similarity=0.460 Sum_probs=41.5
Q ss_pred CEEEEEcCCChhHHHH----HHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEe
Q 032422 45 PVIIFSRSSCCMCHVM----KTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCV 114 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~a----k~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~i 114 (141)
.|.+|+ +|||+|+.+ ++++++.+.+++.++|+..+ ... ..|..++|++++||+.+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~----------~a~----~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMN----------EIL----EAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH----------HHH----HcCCCcCCEEEECCEEE
Confidence 356676 999999999 55666788889999998321 111 36899999999999654
No 41
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.74 E-value=1.1e-08 Score=70.40 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=33.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCc
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEIS 82 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~ 82 (141)
|+||+.++||+|++|+++|++.|++|+.+|+..++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~ 37 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPS 37 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCccc
Confidence 5799999999999999999999999999999887643
No 42
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.73 E-value=9.6e-08 Score=59.97 Aligned_cols=65 Identities=15% Similarity=0.290 Sum_probs=50.5
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEEC-CeEeeccHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIG-GTCVGGLESLV 121 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~-G~~iGG~del~ 121 (141)
++|+.++||+|.+++.+|+..|++|+.++++..... +.+. +.++..++|++..+ |..+.....+.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~-------~~~~---~~np~~~vP~L~~~~g~~l~eS~aI~ 67 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKP-------AEML---AASPKGTVPVLVLGNGTVIEESLDIM 67 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCC-------HHHH---HHCCCCCCCEEEECCCcEEecHHHHH
Confidence 689999999999999999999999999998864311 1232 25778899999996 87776555443
No 43
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.73 E-value=1.7e-08 Score=68.41 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=33.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEI 81 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~ 81 (141)
|+||+.++||+|++|+++|++.|++|+++|+...+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~ 36 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPP 36 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCC
Confidence 579999999999999999999999999999987664
No 44
>PHA02125 thioredoxin-like protein
Probab=98.71 E-value=7.2e-08 Score=61.53 Aligned_cols=56 Identities=18% Similarity=0.420 Sum_probs=41.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEee
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVG 115 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iG 115 (141)
|++|+.+||++|+.++.+|++. .+..++||.++.. .+. +..+..++|++. +|+.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~~--------~l~---~~~~v~~~PT~~-~g~~~~ 57 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEGV--------ELT---AKHHIRSLPTLV-NTSTLD 57 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCCH--------HHH---HHcCCceeCeEE-CCEEEE
Confidence 7899999999999999999864 5667777754421 122 246889999976 776543
No 45
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.71 E-value=1.7e-07 Score=65.47 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=48.9
Q ss_pred HHHHHhc-CCC-EEEEEcCCChhHHHHHHHHHh----cCCCceEEEecCCCCccCC--cccHHHHHhhhCCCCCCCCCEE
Q 032422 36 RIQRLIS-EHP-VIIFSRSSCCMCHVMKTLFAT----IGVHPTVIELDDHEISALP--LVDHDESAHADSPRNPAPAPAV 107 (141)
Q Consensus 36 ~l~~~~~-~~~-Vvvy~~~~Cp~C~~ak~~L~~----~gi~~~~idid~~~~~~~~--~~l~~~l~~l~~~~g~~tvP~V 107 (141)
.+.+.++ ... ++.|+++|||+|+.+...|++ .+.++.++|+|.++..... ..+++.++.....++..++|++
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~ 94 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF 94 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE
Confidence 3444444 344 667999999999998887764 4577888888865421111 0122222221111456679986
Q ss_pred --EECCeEeecc
Q 032422 108 --FIGGTCVGGL 117 (141)
Q Consensus 108 --fI~G~~iGG~ 117 (141)
|-+|+.++..
T Consensus 95 v~~k~Gk~v~~~ 106 (122)
T TIGR01295 95 VHITDGKQVSVR 106 (122)
T ss_pred EEEeCCeEEEEE
Confidence 5689776544
No 46
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.68 E-value=2.3e-07 Score=58.03 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=51.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l 123 (141)
+++|+.++||+|++++.+|+..|++|+.++++..... ..+.+ .+...++|++..||..+.....+...
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~-------~~~~~---~~p~~~vP~l~~~~~~l~es~aI~~y 68 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPP-------EDLAE---LNPYGTVPTLVDRDLVLYESRIIMEY 68 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCC-------HHHHh---hCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 3689999999999999999999999999888753211 13332 46677999998888777666555444
No 47
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.67 E-value=7.2e-08 Score=66.27 Aligned_cols=65 Identities=17% Similarity=0.425 Sum_probs=44.3
Q ss_pred hHHH-HHHHHhcCCCEEEE-EcCCChhHHHHHHHHHhcC-----CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCC
Q 032422 32 SSEA-RIQRLISEHPVIIF-SRSSCCMCHVMKTLFATIG-----VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPA 104 (141)
Q Consensus 32 ~~~~-~l~~~~~~~~Vvvy-~~~~Cp~C~~ak~~L~~~g-----i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tv 104 (141)
...+ ..+++.....++|| +.+|||+|+.++.+|++.. +.+..+|++..+ .+. +..+..++
T Consensus 10 ~~~~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----------~l~---~~~~v~~v 76 (113)
T cd02975 10 ALKEEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----------EKA---EKYGVERV 76 (113)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----------HHH---HHcCCCcC
Confidence 3444 44556666667776 7899999999999998653 345556665432 222 25789999
Q ss_pred CEEEE
Q 032422 105 PAVFI 109 (141)
Q Consensus 105 P~VfI 109 (141)
|++++
T Consensus 77 Pt~~i 81 (113)
T cd02975 77 PTTIF 81 (113)
T ss_pred CEEEE
Confidence 99987
No 48
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.66 E-value=1.4e-07 Score=58.92 Aligned_cols=68 Identities=10% Similarity=0.164 Sum_probs=49.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE-CCeEeeccHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI-GGTCVGGLESLV 121 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI-~G~~iGG~del~ 121 (141)
.+|+.++||+|++++.+|...|++|+.+.++....... .+.+. +.++..++|++.+ ||..+.....+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~----~~~~~---~~~p~~~vP~l~~~~~~~l~es~aI~ 70 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQR----SPEFL---AKNPAGTVPVLELDDGTVITESVAIC 70 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccC----CHHHH---hhCCCCCCCEEEeCCCCEEecHHHHH
Confidence 68999999999999999999999999988875432111 01232 3577889999997 556665554443
No 49
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.63 E-value=4.6e-07 Score=59.57 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=53.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEEC-CeEeeccHHHHH
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIG-GTCVGGLESLVA 122 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~-G~~iGG~del~~ 122 (141)
..+.+|+.+.||+|.+++.+|...|++|+.++++.... . +.+. +.++..++|++.++ |..+.....+..
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~-~------~~~~---~~np~~~vPvL~~~~g~~l~eS~aI~~ 86 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDK-P------DWFL---EKNPQGKVPALEIDEGKVVYESLIICE 86 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCC-c------HHHH---hhCCCCCcCEEEECCCCEEECHHHHHH
Confidence 45899999999999999999999999999998875331 1 1222 25778899999998 777776665544
No 50
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.61 E-value=5.3e-08 Score=68.87 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=33.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEI 81 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~ 81 (141)
|+||+.++||+|++|+++|++.|++|+.+|+..++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~ 37 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPL 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChh
Confidence 789999999999999999999999999999987653
No 51
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.60 E-value=4.1e-07 Score=57.08 Aligned_cols=70 Identities=10% Similarity=0.119 Sum_probs=51.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
+.+|+.+.||+|++++.+|+..|++|+.++++....... .+.+. +.+...++|.+..+|..+.....+..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~----~~~~~---~~~p~~~vP~l~~~~~~l~es~aI~~ 70 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHL----KPEFL---KLNPQHTVPTLVDNGFVLWESHAILI 70 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcC----CHHHH---hhCcCCCCCEEEECCEEEEcHHHHHH
Confidence 368999999999999999999999999998875432211 12333 35667899999988877665554443
No 52
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.59 E-value=3.1e-07 Score=59.54 Aligned_cols=53 Identities=15% Similarity=0.465 Sum_probs=39.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcC----CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECC
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIG----VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGG 111 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~g----i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G 111 (141)
+|++|++++|+.|..|+..|.... +.++.+||+.++ .+.+ .+| ..+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~----------~l~~---~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDP----------ELFE---KYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTH----------HHHH---HSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCH----------HHHH---Hhc-CCCCEEEEcC
Confidence 589999999999999999999653 446788888444 2221 366 5899999999
No 53
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.57 E-value=6.5e-08 Score=82.02 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=58.0
Q ss_pred CCCcchhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCC
Q 032422 26 SIDGEESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAP 105 (141)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP 105 (141)
.+..+++..+.++++-+...|.+|.+++||||..+.+.+++..+....+..+..+... .++.. +.++..+||
T Consensus 101 ~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~----~~~~~----~~~~v~~VP 172 (515)
T TIGR03140 101 GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGAL----FQDEV----EALGIQGVP 172 (515)
T ss_pred CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh----CHHHH----HhcCCcccC
Confidence 4455688899999888888999999999999999999998764443223222222111 11222 357888999
Q ss_pred EEEECCeEee
Q 032422 106 AVFIGGTCVG 115 (141)
Q Consensus 106 ~VfI~G~~iG 115 (141)
++||||+.++
T Consensus 173 ~~~i~~~~~~ 182 (515)
T TIGR03140 173 AVFLNGEEFH 182 (515)
T ss_pred EEEECCcEEE
Confidence 9999997654
No 54
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.55 E-value=8e-08 Score=66.48 Aligned_cols=36 Identities=11% Similarity=0.453 Sum_probs=33.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEI 81 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~ 81 (141)
|++|+.++||+|++|+++|++.|++|+.+|+...+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~ 36 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGP 36 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChh
Confidence 579999999999999999999999999999987654
No 55
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.53 E-value=9.9e-08 Score=80.89 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=57.3
Q ss_pred CCCcchhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCC-----CceEEEecCCCCccCCcccHHHHHhhhCCCC
Q 032422 26 SIDGEESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGV-----HPTVIELDDHEISALPLVDHDESAHADSPRN 100 (141)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi-----~~~~idid~~~~~~~~~~l~~~l~~l~~~~g 100 (141)
....+++..+.++++-+...|.+|.+++||||.++.+.+++..+ ..+.+|....+ +.. +.++
T Consensus 100 ~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~---------~~~----~~~~ 166 (517)
T PRK15317 100 PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQ---------DEV----EARN 166 (517)
T ss_pred CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCH---------hHH----HhcC
Confidence 44456888999999888889999999999999999999987643 33344333222 122 3578
Q ss_pred CCCCCEEEECCeEee
Q 032422 101 PAPAPAVFIGGTCVG 115 (141)
Q Consensus 101 ~~tvP~VfI~G~~iG 115 (141)
..+||++|+||+.+.
T Consensus 167 v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 167 IMAVPTVFLNGEEFG 181 (517)
T ss_pred CcccCEEEECCcEEE
Confidence 899999999997653
No 56
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.50 E-value=2.4e-07 Score=65.58 Aligned_cols=36 Identities=17% Similarity=0.414 Sum_probs=33.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEI 81 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~ 81 (141)
|+||+.++|+.|++|+++|++.|++|+.+|+..++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~ 37 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSM 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcC
Confidence 789999999999999999999999999999987654
No 57
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.49 E-value=1.9e-07 Score=64.49 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=32.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHE 80 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~ 80 (141)
|+||+.++||+|++|+++|++.|++|+.+|+...+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCc
Confidence 78999999999999999999999999999997765
No 58
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.48 E-value=2.2e-07 Score=65.91 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=33.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEI 81 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~ 81 (141)
|+||+.++|+.|++|+++|++.|++|+++|+..++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~ 37 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPL 37 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCC
Confidence 789999999999999999999999999999987653
No 59
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.48 E-value=5.9e-07 Score=68.13 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=48.3
Q ss_pred chhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcC-----CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCC
Q 032422 30 EESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIG-----VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPA 104 (141)
Q Consensus 30 ~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~g-----i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tv 104 (141)
+++..+.++.+-+...|++|+.+|||+|..++.++++.. +.+..+|++..+ .+. +..|..++
T Consensus 121 ~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~----------~~~---~~~~V~~v 187 (215)
T TIGR02187 121 SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENP----------DLA---EKYGVMSV 187 (215)
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCH----------HHH---HHhCCccC
Confidence 355667777655566777799999999999999998652 334445544332 122 24789999
Q ss_pred CEEEECCe
Q 032422 105 PAVFIGGT 112 (141)
Q Consensus 105 P~VfI~G~ 112 (141)
|+++++++
T Consensus 188 Ptl~i~~~ 195 (215)
T TIGR02187 188 PKIVINKG 195 (215)
T ss_pred CEEEEecC
Confidence 99988753
No 60
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.46 E-value=1.3e-06 Score=54.34 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=51.5
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
++|+.+.||+|.+++.+|+..|++|+.++++....... .+.+. +.+...++|++..+|..+.....+..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~----~~~~~---~~~p~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETR----TPEFL---ALNPNGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccC----CHHHH---HhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 68999999999999999999999999999875332111 11222 24667799999999988766655443
No 61
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.45 E-value=9e-07 Score=56.17 Aligned_cols=67 Identities=9% Similarity=0.168 Sum_probs=54.4
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHH
Q 032422 48 IFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALH 124 (141)
Q Consensus 48 vy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~ 124 (141)
+|+.++||||.+++-+|...|++|+.++++..... +.+.+ .++..++|++..||..+.+...+.+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~-------~~~~~---~~p~~~vPvL~~~g~~l~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKR-------PEFLK---LNPKGKVPVLVDDGEVLTDSAAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTS-------HHHHH---HSTTSBSSEEEETTEEEESHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccch-------hHHHh---hcccccceEEEECCEEEeCHHHHHHHH
Confidence 58999999999999999999999999999854421 13332 467889999999999999888776653
No 62
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.44 E-value=2.8e-07 Score=62.87 Aligned_cols=37 Identities=11% Similarity=0.271 Sum_probs=34.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCc
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEIS 82 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~ 82 (141)
|+||+.++|+.|++|+++|++.|++|+++|+...+-.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s 37 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLD 37 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCC
Confidence 5799999999999999999999999999999887643
No 63
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.40 E-value=9.3e-07 Score=75.69 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=60.4
Q ss_pred CCCCCCcchhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc-----CCCceEEEecCCCCccCCcccHHHHHhhhC
Q 032422 23 TNLSIDGEESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATI-----GVHPTVIELDDHEISALPLVDHDESAHADS 97 (141)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~-----gi~~~~idid~~~~~~~~~~l~~~l~~l~~ 97 (141)
|...+..+++..+.++++-+...|.+|..++||||.++.+.+++. +|+.+.+|+...++ .. +
T Consensus 457 ~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~---------~~----~ 523 (555)
T TIGR03143 457 AGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD---------LK----D 523 (555)
T ss_pred cCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH---------HH----H
Confidence 334445568889999988888889999999999999998888653 57777887775442 22 2
Q ss_pred CCCCCCCCEEEECCeE
Q 032422 98 PRNPAPAPAVFIGGTC 113 (141)
Q Consensus 98 ~~g~~tvP~VfI~G~~ 113 (141)
.++..+||.++|||+.
T Consensus 524 ~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 524 EYGIMSVPAIVVDDQQ 539 (555)
T ss_pred hCCceecCEEEECCEE
Confidence 5789999999999964
No 64
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.31 E-value=5.8e-06 Score=51.81 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=46.2
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHH
Q 032422 52 SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALH 124 (141)
Q Consensus 52 ~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~ 124 (141)
++||+|.+++.+|+..|++|+.++++... .+....+|++..+|+.+.++..+.+..
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------------~~p~g~vP~l~~~g~~l~es~~I~~yL 69 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------------RSPTGKLPFLELNGEKIADSEKIIEYL 69 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------------cCCCcccCEEEECCEEEcCHHHHHHHH
Confidence 47999999999999999999999887422 234568999999999999888766654
No 65
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.27 E-value=4.6e-06 Score=57.77 Aligned_cols=57 Identities=21% Similarity=0.308 Sum_probs=39.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC------CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEee
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIG------VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCVG 115 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~g------i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~iG 115 (141)
|+-|+.+|||.|+.+...|++.. +.+-.+|+|..+ .+. +..|..++|++ |-+|+.++
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~----------~la---~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP----------DFN---KMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH----------HHH---HHcCCCCCCEEEEEECCEEEE
Confidence 33499999999999999997642 234455666543 122 24788999986 66888764
No 66
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2e-06 Score=68.13 Aligned_cols=86 Identities=19% Similarity=0.266 Sum_probs=59.3
Q ss_pred CCCCCCCCCcc-hhHHHHHHHHhcCCCEEE-EEcCCChhHHHHHHHHHhc----CCCc--eEEEecCCCCccCCcccHHH
Q 032422 20 SSTTNLSIDGE-ESSEARIQRLISEHPVII-FSRSSCCMCHVMKTLFATI----GVHP--TVIELDDHEISALPLVDHDE 91 (141)
Q Consensus 20 ~~~~~~~~~~~-~~~~~~l~~~~~~~~Vvv-y~~~~Cp~C~~ak~~L~~~----gi~~--~~idid~~~~~~~~~~l~~~ 91 (141)
.+.++...+.+ ....+.+.+-....||+| |+.|||+.|+.....|++. +=.| -.+|+|.++.-
T Consensus 19 ~~~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~v--------- 89 (304)
T COG3118 19 AMAAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMV--------- 89 (304)
T ss_pred ccccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhH---------
Confidence 34444444543 344666777777777777 8899999999999999864 3333 46666665521
Q ss_pred HHhhhCCCCCCCCCEE--EECCeEeeccH
Q 032422 92 SAHADSPRNPAPAPAV--FIGGTCVGGLE 118 (141)
Q Consensus 92 l~~l~~~~g~~tvP~V--fI~G~~iGG~d 118 (141)
. ...|..++|+| |++|+.|-||.
T Consensus 90 -A---aqfgiqsIPtV~af~dGqpVdgF~ 114 (304)
T COG3118 90 -A---AQFGVQSIPTVYAFKDGQPVDGFQ 114 (304)
T ss_pred -H---HHhCcCcCCeEEEeeCCcCccccC
Confidence 1 14789999987 88999988773
No 67
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.24 E-value=2.1e-06 Score=59.29 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=33.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCC
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHE 80 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~ 80 (141)
.|++|+.++|+.|++|+++|+++|++|+++|+-..+
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p 36 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEP 36 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCC
Confidence 378999999999999999999999999999997765
No 68
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.23 E-value=2.5e-06 Score=54.53 Aligned_cols=54 Identities=20% Similarity=0.451 Sum_probs=37.2
Q ss_pred CEEEEEcCCChhHHHHHHHHH----hcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeE
Q 032422 45 PVIIFSRSSCCMCHVMKTLFA----TIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTC 113 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~----~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~ 113 (141)
+|.+ ..++||+|.++.++++ +.+++++.+|+.. . + ... .+|..++|.++|||+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~-~--------~-~~~----~ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIED-F--------E-EIE----KYGVMSVPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTT-H--------H-HHH----HTT-SSSSEEEETTEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccC-H--------H-HHH----HcCCCCCCEEEECCEE
Confidence 3566 4577999998877665 4577777777621 1 1 222 4899999999999974
No 69
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3.2e-06 Score=60.96 Aligned_cols=72 Identities=21% Similarity=0.394 Sum_probs=50.9
Q ss_pred chhHHHHHHHHhc-CCCEEE-EEcCCChhHHHHHHHHHhcC------CCceEEEecCCCCccCCcccHHHHHhhhCCCCC
Q 032422 30 EESSEARIQRLIS-EHPVII-FSRSSCCMCHVMKTLFATIG------VHPTVIELDDHEISALPLVDHDESAHADSPRNP 101 (141)
Q Consensus 30 ~~~~~~~l~~~~~-~~~Vvv-y~~~~Cp~C~~ak~~L~~~g------i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~ 101 (141)
..+..++-++.++ ..+|+| |..+||..|+.....|+++- +++..+|+|++.+- . +.++.
T Consensus 47 ~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~el----------a---~~Y~I 113 (150)
T KOG0910|consen 47 VQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPEL----------A---EDYEI 113 (150)
T ss_pred ccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccch----------H---hhcce
Confidence 3556667667665 456665 99999999999999998753 34556677665532 1 14788
Q ss_pred CCCCEE--EECCeEe
Q 032422 102 APAPAV--FIGGTCV 114 (141)
Q Consensus 102 ~tvP~V--fI~G~~i 114 (141)
..+|+| |-||+.+
T Consensus 114 ~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 114 SAVPTVLVFKNGEKV 128 (150)
T ss_pred eeeeEEEEEECCEEe
Confidence 999986 6688644
No 70
>PHA02278 thioredoxin-like protein
Probab=98.21 E-value=1.6e-05 Score=53.97 Aligned_cols=65 Identities=15% Similarity=0.418 Sum_probs=42.0
Q ss_pred cCCCEEE-EEcCCChhHHHHHHHHHhc------CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCe
Q 032422 42 SEHPVII-FSRSSCCMCHVMKTLFATI------GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGT 112 (141)
Q Consensus 42 ~~~~Vvv-y~~~~Cp~C~~ak~~L~~~------gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~ 112 (141)
+..+|+| |+++||+.|+.+...|++. .+++..+|+|..+... ..+. +..+..++|++ |-||+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~------~~l~---~~~~I~~iPT~i~fk~G~ 83 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDR------EKAV---KLFDIMSTPVLIGYKDGQ 83 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccccc------HHHH---HHCCCccccEEEEEECCE
Confidence 4455555 8899999999999888654 2346667777643210 1222 24678899986 55887
Q ss_pred Eee
Q 032422 113 CVG 115 (141)
Q Consensus 113 ~iG 115 (141)
.++
T Consensus 84 ~v~ 86 (103)
T PHA02278 84 LVK 86 (103)
T ss_pred EEE
Confidence 653
No 71
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.17 E-value=7.8e-06 Score=54.62 Aligned_cols=67 Identities=10% Similarity=0.183 Sum_probs=36.6
Q ss_pred HHHHHhcCCC--EEEEEcCCChhHHHHHHHH------H-hcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCE
Q 032422 36 RIQRLISEHP--VIIFSRSSCCMCHVMKTLF------A-TIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPA 106 (141)
Q Consensus 36 ~l~~~~~~~~--Vvvy~~~~Cp~C~~ak~~L------~-~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~ 106 (141)
.+.++++.++ ++.|+.+||++|++....+ . ..+-.+..+.+|...+.. ...++.+..+..++|+
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-------~~~~~~~~~~i~~~Pt 75 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDP-------EITALLKRFGVFGPPT 75 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCH-------HHHHHHHHcCCCCCCE
Confidence 3455555554 4459999999999987554 1 122134444444322111 1112223468899998
Q ss_pred EEE
Q 032422 107 VFI 109 (141)
Q Consensus 107 VfI 109 (141)
+++
T Consensus 76 i~~ 78 (104)
T cd02953 76 YLF 78 (104)
T ss_pred EEE
Confidence 644
No 72
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.13 E-value=1.6e-05 Score=50.37 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=40.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHh-----cCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE--CCeEee
Q 032422 45 PVIIFSRSSCCMCHVMKTLFAT-----IGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI--GGTCVG 115 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~-----~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI--~G~~iG 115 (141)
-+++|+.+||++|..+...|++ .++.+..+|++.... ..+ ..+..++|++++ +|+.++
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~----~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE---------LAE----EYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh---------HHH----hcCcccccEEEEEECCEEEE
Confidence 3667999999999999999976 455566666654221 222 357788999766 787443
No 73
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.12 E-value=1.8e-05 Score=54.34 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=39.8
Q ss_pred CCCEEE-EEcCCChhHHHHHHHHHhc-----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEe
Q 032422 43 EHPVII-FSRSSCCMCHVMKTLFATI-----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCV 114 (141)
Q Consensus 43 ~~~Vvv-y~~~~Cp~C~~ak~~L~~~-----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~i 114 (141)
...|+| |+.+||+.|+.+...|++. ++.+..+|++..+ . ..+ ..+..++|++ |-+|+.+
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~--~-------l~~----~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP--F-------LVE----KLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH--H-------HHH----HCCCccCCEEEEEECCEEE
Confidence 445554 8889999999999888763 3444455554432 1 122 4678899986 6689766
Q ss_pred ec
Q 032422 115 GG 116 (141)
Q Consensus 115 GG 116 (141)
+-
T Consensus 89 ~~ 90 (113)
T cd02989 89 DR 90 (113)
T ss_pred EE
Confidence 43
No 74
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.11 E-value=4.5e-05 Score=48.27 Aligned_cols=70 Identities=6% Similarity=0.093 Sum_probs=52.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
+++|..+.||+|.+++-+|+..|++|+.+.++....... .+.+. +.+...++|.+..||..+.....+..
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~----~~~~~---~inP~g~vP~L~~~g~~l~Es~aI~~ 70 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHN----EPWFM---RLNPTGEVPVLIHGDNIICDPTQIID 70 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccC----CHHHH---HhCcCCCCCEEEECCEEEEcHHHHHH
Confidence 468999999999999999999999999998876432211 11233 25778899999988887766655443
No 75
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.10 E-value=6.4e-05 Score=47.24 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=53.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l 123 (141)
+.+|+.+.||+|.+++-+|+..|++|+.+.++....... .+.+. +.+....+|.+..+|..+.....+...
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~----~~~~~---~~~P~~~vP~l~~~g~~l~es~aI~~y 72 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHK----SPEHL---ARNPFGQIPALEDGDLKLFESRAITRY 72 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccC----CHHHH---hhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 578999999999999999999999999988876432111 12333 256778999999888877766665554
No 76
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.10 E-value=3e-05 Score=61.26 Aligned_cols=63 Identities=14% Similarity=0.294 Sum_probs=50.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccH
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLE 118 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~d 118 (141)
-.+++|-...||||.+++.+|+=+|++|.+++|+..-. .+. +.+..+.||.+.+.|+.+-...
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r--------~eI----k~SsykKVPil~~~Geqm~dSs 151 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLR--------QEI----KWSSYKKVPILLIRGEQMVDSS 151 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhh--------hhc----cccccccccEEEeccceechhH
Confidence 38999999999999999999999999999999985331 112 3578899999999988544443
No 77
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.09 E-value=2.2e-05 Score=52.75 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=36.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEee
Q 032422 46 VIIFSRSSCCMCHVMKTLFATI-----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCVG 115 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~-----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~iG 115 (141)
|+-|+.+||+.|+.....|++. ++.+-.+|+|..+.. . .+. +..+...+|++ |-+|+.++
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~------~-~l~---~~~~V~~~Pt~~~~~~G~~v~ 85 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST------M-ELC---RREKIIEVPHFLFYKDGEKIH 85 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH------H-HHH---HHcCCCcCCEEEEEeCCeEEE
Confidence 4449999999999998888753 233444444432210 1 121 24678889976 44887553
No 78
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.08 E-value=4.2e-05 Score=48.36 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=48.7
Q ss_pred EEEEEcC-------CChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccH
Q 032422 46 VIIFSRS-------SCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLE 118 (141)
Q Consensus 46 Vvvy~~~-------~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~d 118 (141)
+++|..+ .||+|.+++.+|...|++|+.++++.. ..+....+|++..||+.+.+..
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------------~~~p~g~vPvl~~~g~~l~eS~ 64 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------------KRSPKGKLPFIELNGEKIADSE 64 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------------cCCCCCCCCEEEECCEEEcCHH
Confidence 4677776 579999999999999999998877631 1355688999999999888877
Q ss_pred HHHHH
Q 032422 119 SLVAL 123 (141)
Q Consensus 119 el~~l 123 (141)
.+.+.
T Consensus 65 ~I~~y 69 (75)
T cd03080 65 LIIDH 69 (75)
T ss_pred HHHHH
Confidence 66554
No 79
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.08 E-value=1.5e-05 Score=52.82 Aligned_cols=57 Identities=18% Similarity=0.447 Sum_probs=36.8
Q ss_pred EEEEEcCCChhHHHHHHHHHh----cC--CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE--CCeEee
Q 032422 46 VIIFSRSSCCMCHVMKTLFAT----IG--VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI--GGTCVG 115 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~----~g--i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI--~G~~iG 115 (141)
+++|+.+||+.|+.+...|++ .+ +.+..+|++..+ +..+ ..+..++|++++ +|+.++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~---------~l~~----~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ---------EIAE----AAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH---------HHHH----HCCCeeccEEEEEECCeEEE
Confidence 446889999999999988865 22 334444544322 1222 367889998644 777653
No 80
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.06 E-value=5.3e-05 Score=47.54 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=49.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCC-CCCCCEEEECCeEeeccHHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRN-PAPAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g-~~tvP~VfI~G~~iGG~del~~l 123 (141)
.+|+.+.||+|.+++-+|...|++|+.++++..... ..+.+ ... ..++|.+..+|..+.....+.+.
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~-------~~~~~---~~p~~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKS-------ELLLA---SNPVHKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCC-------HHHHH---hCCCCCCCCEEEECCEEeehHHHHHHH
Confidence 589999999999999999999999999887653211 12322 344 47999999888777666655443
No 81
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.03 E-value=3.3e-05 Score=51.42 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=48.3
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHH
Q 032422 52 SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALH 124 (141)
Q Consensus 52 ~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~ 124 (141)
..||||++++-.|...|++|+.++++.....+ .+. +.+-...+|++..+|..+...+.+.+..
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~-------~~~---~~nP~g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPE-------DLK---DLAPGTQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCH-------HHH---HhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 56999999999999999999999887644211 232 2466688999999998887777666553
No 82
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.99 E-value=3.1e-05 Score=51.27 Aligned_cols=63 Identities=13% Similarity=0.284 Sum_probs=40.5
Q ss_pred HHHHhcCCCEEEEEcCCChhHHHHHHHHHhc-------CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE
Q 032422 37 IQRLISEHPVIIFSRSSCCMCHVMKTLFATI-------GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI 109 (141)
Q Consensus 37 l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~-------gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI 109 (141)
++++++...++.|+.+|||+|+.....|++. ++.+-.+|++..+ . ..+ ..+..++|++++
T Consensus 11 f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~--~-------~~~----~~~i~~~Pt~~~ 77 (101)
T cd02994 11 WTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP--G-------LSG----RFFVTALPTIYH 77 (101)
T ss_pred HHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH--h-------HHH----HcCCcccCEEEE
Confidence 4455666678889999999999999888654 2233344443222 1 122 467889998765
Q ss_pred --CCe
Q 032422 110 --GGT 112 (141)
Q Consensus 110 --~G~ 112 (141)
+|+
T Consensus 78 ~~~g~ 82 (101)
T cd02994 78 AKDGV 82 (101)
T ss_pred eCCCC
Confidence 554
No 83
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.98 E-value=5e-05 Score=51.78 Aligned_cols=66 Identities=11% Similarity=0.213 Sum_probs=42.2
Q ss_pred CCEE-EEEcCCChhHHHHHHHHHhc-----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEee
Q 032422 44 HPVI-IFSRSSCCMCHVMKTLFATI-----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCVG 115 (141)
Q Consensus 44 ~~Vv-vy~~~~Cp~C~~ak~~L~~~-----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~iG 115 (141)
.+|+ .|+.+||+.|+.+...|++. ++.|-.+|++.. . +. +..+..++|++ |-+|+.++
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~---~--------l~---~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA---F--------LV---NYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh---H--------HH---HhcCCCcCCEEEEEECCEEEE
Confidence 3444 48899999999999888754 333344444322 1 11 24678899976 67998876
Q ss_pred ccHHHHHH
Q 032422 116 GLESLVAL 123 (141)
Q Consensus 116 G~del~~l 123 (141)
.+.....+
T Consensus 91 ~~~G~~~~ 98 (113)
T cd02957 91 NIVGFEEL 98 (113)
T ss_pred EEecHHHh
Confidence 55444444
No 84
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.97 E-value=5.5e-05 Score=46.97 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=50.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
++|+...|++|.+++.+|...|++|+.+.++..+.... .+.+. +.+...++|++..+|..+.....+..
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~----~~~~~---~~~p~~~vP~l~~~~~~l~es~aI~~ 70 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQL----SPAYR---ALNPQGLVPTLVIDGLVLTQSLAIIE 70 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcC----ChHHH---HhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 57888999999999999999999999988876432111 01232 24677899999999887766554433
No 85
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.94 E-value=7.9e-05 Score=46.58 Aligned_cols=66 Identities=6% Similarity=0.095 Sum_probs=48.6
Q ss_pred EEEEcCCChhHHHHHHHHHh--cCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE-CCeEeeccHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFAT--IGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI-GGTCVGGLESLVA 122 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~--~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI-~G~~iGG~del~~ 122 (141)
.+|+.+.||+|.+++-+|.. .|++|+.+.++..... ..+. +.....++|.+.. ||..+.....+..
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~-------~~~~---~~~p~~~vP~l~~~~g~~l~es~aI~~ 70 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDD-------ESLL---AVNPLGKIPALVLDDGEALFDSRVICE 70 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCC-------hHHH---HhCCCCCCCEEEECCCCEEECHHHHHh
Confidence 58999999999999999999 8999999988743211 1222 2466789999975 6777766554443
No 86
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.94 E-value=5.1e-05 Score=52.50 Aligned_cols=59 Identities=14% Similarity=0.363 Sum_probs=39.7
Q ss_pred CCCEEE-EEcCCChhHHHHHHHHHhcC------CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCE--EEECCeE
Q 032422 43 EHPVII-FSRSSCCMCHVMKTLFATIG------VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPA--VFIGGTC 113 (141)
Q Consensus 43 ~~~Vvv-y~~~~Cp~C~~ak~~L~~~g------i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~--VfI~G~~ 113 (141)
...||| |+.+|||.|+.+-.+|.+.. +.+-.+|+|+.++ +.+ ..+....|+ +|-+|+|
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d----------va~---~y~I~amPtfvffkngkh 80 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV----------YTQ---YFDISYIPSTIFFFNGQH 80 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH----------HHH---hcCceeCcEEEEEECCcE
Confidence 444444 99999999999999998753 3344566665442 222 356666776 4678988
Q ss_pred e
Q 032422 114 V 114 (141)
Q Consensus 114 i 114 (141)
+
T Consensus 81 ~ 81 (114)
T cd02986 81 M 81 (114)
T ss_pred E
Confidence 7
No 87
>PTZ00051 thioredoxin; Provisional
Probab=97.93 E-value=8e-05 Score=48.87 Aligned_cols=69 Identities=16% Similarity=0.359 Sum_probs=42.2
Q ss_pred HHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHhc-----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE
Q 032422 35 ARIQRLISEHP--VIIFSRSSCCMCHVMKTLFATI-----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV 107 (141)
Q Consensus 35 ~~l~~~~~~~~--Vvvy~~~~Cp~C~~ak~~L~~~-----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V 107 (141)
+.++++++.++ ++.|+.+||+.|+.....|.+. ++.+-.+|++... +..+ ..+..++|++
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~---------~~~~----~~~v~~~Pt~ 75 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS---------EVAE----KENITSMPTF 75 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH---------HHHH----HCCCceeeEE
Confidence 34555665554 3458999999999998888763 3334444443211 1222 4677889976
Q ss_pred --EECCeEeec
Q 032422 108 --FIGGTCVGG 116 (141)
Q Consensus 108 --fI~G~~iGG 116 (141)
|-+|+.++.
T Consensus 76 ~~~~~g~~~~~ 86 (98)
T PTZ00051 76 KVFKNGSVVDT 86 (98)
T ss_pred EEEeCCeEEEE
Confidence 447866543
No 88
>PRK10996 thioredoxin 2; Provisional
Probab=97.92 E-value=0.00019 Score=50.87 Aligned_cols=98 Identities=16% Similarity=0.275 Sum_probs=53.6
Q ss_pred cCCCcceeeecCCCCCCCCCCC-CcchhHHHHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHhc----CCCceEEEecC
Q 032422 6 RYPNDVVHLDLTPPSSTTNLSI-DGEESSEARIQRLISEHP--VIIFSRSSCCMCHVMKTLFATI----GVHPTVIELDD 78 (141)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--Vvvy~~~~Cp~C~~ak~~L~~~----gi~~~~idid~ 78 (141)
+.|---.+++..=|+.+.+.-. ....-..+.++++++..+ ++.|+.+||++|+.....|.+. +-.+..+.+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~ 92 (139)
T PRK10996 13 RLPDERIEDAAKCGRCGHDLFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNT 92 (139)
T ss_pred CCCCccccCCCcCCCCCCccCCCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 3444445555554433333221 111223445556665443 4459999999999988777643 33345555554
Q ss_pred CCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEe
Q 032422 79 HEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCV 114 (141)
Q Consensus 79 ~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~i 114 (141)
+... +..+ ..+..++|++ |-+|+.+
T Consensus 93 ~~~~-------~l~~----~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 93 EAER-------ELSA----RFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred CCCH-------HHHH----hcCCCccCEEEEEECCEEE
Confidence 3321 1222 4678899976 4488755
No 89
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.91 E-value=7.3e-05 Score=51.66 Aligned_cols=50 Identities=20% Similarity=0.426 Sum_probs=35.6
Q ss_pred hhHHHHHHHHhcCCC-EEE-EEcCCChhHHHHHHHHHh------cCCCceEEEecCCC
Q 032422 31 ESSEARIQRLISEHP-VII-FSRSSCCMCHVMKTLFAT------IGVHPTVIELDDHE 80 (141)
Q Consensus 31 ~~~~~~l~~~~~~~~-Vvv-y~~~~Cp~C~~ak~~L~~------~gi~~~~idid~~~ 80 (141)
.+..+.++++...++ |+| |+.+||++|+.....+.+ .+..|..++++..+
T Consensus 6 ~~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~ 63 (117)
T cd02959 6 VTLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE 63 (117)
T ss_pred eeHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC
Confidence 356777777766544 444 889999999999887765 34457777887644
No 90
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.91 E-value=2.8e-05 Score=45.01 Aligned_cols=56 Identities=18% Similarity=0.434 Sum_probs=39.5
Q ss_pred EEEEEcCCChhHHHHHHHHH-----hcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECC
Q 032422 46 VIIFSRSSCCMCHVMKTLFA-----TIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGG 111 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~-----~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G 111 (141)
+++|..++||+|.++...+. ..++.+..++++...... ... ...+..++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALE------KEL----KRYGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHh------hHH----HhCCCccccEEEEEe
Confidence 46899999999999999999 446666777776544211 111 135678999988766
No 91
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.89 E-value=4.4e-05 Score=57.84 Aligned_cols=67 Identities=18% Similarity=0.381 Sum_probs=44.3
Q ss_pred HHHHhcCCCEEEEEc---CCChhHHHHHHHHHhcC-----CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEE
Q 032422 37 IQRLISEHPVIIFSR---SSCCMCHVMKTLFATIG-----VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVF 108 (141)
Q Consensus 37 l~~~~~~~~Vvvy~~---~~Cp~C~~ak~~L~~~g-----i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~Vf 108 (141)
++.+-+...+++|+. +|||+|+.+..+|++.. +++..+++|.+... .+. +..+..++|++.
T Consensus 14 ~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~--------~l~---~~~~V~~~Pt~~ 82 (215)
T TIGR02187 14 LKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK--------EEA---EKYGVERVPTTI 82 (215)
T ss_pred HHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH--------HHH---HHcCCCccCEEE
Confidence 344445667878988 99999999999997652 33456677644321 122 247899999875
Q ss_pred E--CCeEe
Q 032422 109 I--GGTCV 114 (141)
Q Consensus 109 I--~G~~i 114 (141)
+ ||+.+
T Consensus 83 ~f~~g~~~ 90 (215)
T TIGR02187 83 ILEEGKDG 90 (215)
T ss_pred EEeCCeee
Confidence 5 65443
No 92
>PRK10026 arsenate reductase; Provisional
Probab=97.88 E-value=3.1e-05 Score=55.54 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=34.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCC
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHE 80 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~ 80 (141)
..|++|+.++|.-|++|+++|++.|++|+++|+-..+
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~p 38 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETP 38 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCC
Confidence 4689999999999999999999999999999997765
No 93
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.87 E-value=5.8e-05 Score=56.79 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=51.6
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEE-ECCeEeeccHHHHHHHh
Q 032422 48 IFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVF-IGGTCVGGLESLVALHI 125 (141)
Q Consensus 48 vy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~Vf-I~G~~iGG~del~~l~~ 125 (141)
+|....||+|.+++-+|...|++|+.++++..+.. ..+ +.++..++|++. .||..+.+...+.+...
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-------~~~----~~np~g~vP~l~~~~g~~l~es~~I~~yL~ 69 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-------TPI----RMIGAKQVPILQKDDGRAMPESLDIVAYFD 69 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch-------hHH----HhcCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence 68889999999999999999999998877543311 122 245678999997 78888888877766544
No 94
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.87 E-value=5.9e-05 Score=50.47 Aligned_cols=64 Identities=23% Similarity=0.356 Sum_probs=37.7
Q ss_pred HHHHhcCCC--EEEEEcCCChhHHHHHHHHHhc----C---CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE
Q 032422 37 IQRLISEHP--VIIFSRSSCCMCHVMKTLFATI----G---VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV 107 (141)
Q Consensus 37 l~~~~~~~~--Vvvy~~~~Cp~C~~ak~~L~~~----g---i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V 107 (141)
++++++..+ ++.|+.+||+.|+.....|.+. + +.+..+|+| .+ . ..+ ..+..++|++
T Consensus 10 ~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~--~-------~~~----~~~v~~~Pt~ 75 (102)
T cd02948 10 WEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI--D-------TLK----RYRGKCEPTF 75 (102)
T ss_pred HHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH--H-------HHH----HcCCCcCcEE
Confidence 334444333 3459999999999998888643 2 223344444 11 1 222 3678899965
Q ss_pred --EECCeEe
Q 032422 108 --FIGGTCV 114 (141)
Q Consensus 108 --fI~G~~i 114 (141)
|-+|+.+
T Consensus 76 ~~~~~g~~~ 84 (102)
T cd02948 76 LFYKNGELV 84 (102)
T ss_pred EEEECCEEE
Confidence 5578643
No 95
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.87 E-value=2.5e-05 Score=53.86 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=33.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEI 81 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~ 81 (141)
|++|+.++|+-|++|+++|++.|++|+.+|+-+.+-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~ 36 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPP 36 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCc
Confidence 579999999999999999999999999999977664
No 96
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.85 E-value=2.4e-05 Score=53.71 Aligned_cols=35 Identities=17% Similarity=0.445 Sum_probs=32.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHE 80 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~ 80 (141)
|++|+.++|.-|++|+++|++.|++|+.+|+-+.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCC
Confidence 57999999999999999999999999999997665
No 97
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.85 E-value=6.2e-05 Score=51.25 Aligned_cols=57 Identities=16% Similarity=0.336 Sum_probs=36.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-------CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEe
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI-------GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCV 114 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~-------gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~i 114 (141)
-++.|..+||+.|+.....+.+. ++.+-.+|++..+. ..+ ..|..++|++ |.+|+.+
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~---------l~~----~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR---------LAR----KLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH---------HHH----HcCCccCCEEEEEECCEEE
Confidence 34458999999999888776532 34444555553321 122 3678999986 4688755
No 98
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.85 E-value=0.0001 Score=47.53 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=47.4
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEEC-CeEeeccHHHHHHH
Q 032422 52 SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIG-GTCVGGLESLVALH 124 (141)
Q Consensus 52 ~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~-G~~iGG~del~~l~ 124 (141)
++||+|.+++-+|...|++|+.+.++....... ...+ ...+...+|++..+ |..+.+...+....
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~----~~~~----~~~p~~~vP~L~~~~~~~l~eS~aI~~yL 79 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPI----LGEL----TSGGFYTVPVIVDGSGEVIGDSFAIAEYL 79 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccc----cccc----cCCCCceeCeEEECCCCEEeCHHHHHHHH
Confidence 679999999999999999999988874332111 1111 24667899999888 88887777665543
No 99
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.84 E-value=3.5e-05 Score=53.60 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=34.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCC
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEI 81 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~ 81 (141)
.|++|+.+.|.-|++|+++|+++|++|+++|+-..+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~ 38 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPP 38 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCC
Confidence 4899999999999999999999999999999987664
No 100
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.83 E-value=6.5e-05 Score=50.24 Aligned_cols=35 Identities=11% Similarity=0.347 Sum_probs=24.5
Q ss_pred hHHHHHHHHhcCCCEEE-EEcCCChhHHHHHHHHHh
Q 032422 32 SSEARIQRLISEHPVII-FSRSSCCMCHVMKTLFAT 66 (141)
Q Consensus 32 ~~~~~l~~~~~~~~Vvv-y~~~~Cp~C~~ak~~L~~ 66 (141)
|+.+.+.++.+...++| |+.+|||+|++....|++
T Consensus 4 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~ 39 (104)
T cd03000 4 DLDDSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNE 39 (104)
T ss_pred echhhhhhhccCCeEEEEEECCCCHHHHhhChHHHH
Confidence 44455566555455544 889999999988877754
No 101
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.81 E-value=5.5e-05 Score=52.19 Aligned_cols=31 Identities=19% Similarity=0.562 Sum_probs=21.9
Q ss_pred HHHHHHHhcCC--C-EEEEEcCCChhHHHHHHHH
Q 032422 34 EARIQRLISEH--P-VIIFSRSSCCMCHVMKTLF 64 (141)
Q Consensus 34 ~~~l~~~~~~~--~-Vvvy~~~~Cp~C~~ak~~L 64 (141)
.+.++++.+.+ + ++.|+.+|||+|++....+
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHh
Confidence 44556666655 3 3458999999999987655
No 102
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.81 E-value=0.00014 Score=50.92 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=44.4
Q ss_pred HHHHHHhcCCC-EEE-EEcCCChhHHHHHH-HHHh------cCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCC
Q 032422 35 ARIQRLISEHP-VII-FSRSSCCMCHVMKT-LFAT------IGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAP 105 (141)
Q Consensus 35 ~~l~~~~~~~~-Vvv-y~~~~Cp~C~~ak~-~L~~------~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP 105 (141)
+.++++.+.++ |+| |+.+||++|++..+ .+.. .+-.|..+.+|........ +...+.+....|...+|
T Consensus 6 eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~---~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 6 EAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVD---KIYMNAAQAMTGQGGWP 82 (124)
T ss_pred HHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHH---HHHHHHHHHhcCCCCCC
Confidence 34566665544 554 88899999998864 3432 3446777777654322111 11111111245788999
Q ss_pred EEEE---CCeEee
Q 032422 106 AVFI---GGTCVG 115 (141)
Q Consensus 106 ~VfI---~G~~iG 115 (141)
++.+ +|+.+.
T Consensus 83 t~vfl~~~G~~~~ 95 (124)
T cd02955 83 LNVFLTPDLKPFF 95 (124)
T ss_pred EEEEECCCCCEEe
Confidence 8644 577773
No 103
>PRK09381 trxA thioredoxin; Provisional
Probab=97.80 E-value=6.9e-05 Score=50.32 Aligned_cols=58 Identities=10% Similarity=0.301 Sum_probs=37.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHh----cC--CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE--CCeEee
Q 032422 45 PVIIFSRSSCCMCHVMKTLFAT----IG--VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI--GGTCVG 115 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~----~g--i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI--~G~~iG 115 (141)
-++.|..+|||.|+.+...|++ .+ +.+-.+|++..+ . ..+ ..+..++|++++ +|+.++
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~--~-------~~~----~~~v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP--G-------TAP----KYGIRGIPTLLLFKNGEVAA 89 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh--h-------HHH----hCCCCcCCEEEEEeCCeEEE
Confidence 3445889999999999888764 32 233444444332 1 122 467899998744 888664
No 104
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.80 E-value=0.00028 Score=44.35 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=52.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l 123 (141)
++++|..+.|+.|.+++-+|...|++|+.+.++... . .+.+. ..+...++|++..||..+.....+...
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~-~------~~~~~---~~~p~~~vP~l~~~~~~l~es~aI~~y 69 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEE-W------QESLK---PKMLFGQLPCFKDGDLTLVQSNAILRH 69 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHH-h------hhhhh---ccCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 467888889999999999999999999999886411 0 11122 356678999999999888777665554
No 105
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.79 E-value=4.8e-05 Score=53.51 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=33.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCC
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHE 80 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~ 80 (141)
.+++|+.++|.-|++|+++|++.|++|+++|+-..+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEP 37 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCC
Confidence 478999999999999999999999999999987654
No 106
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.78 E-value=2.8e-05 Score=51.00 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=39.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEee
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCVG 115 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~iG 115 (141)
-|+.|+.+||++|+..+..|.+. +-++..+.||..... +..+ ..+...+|++ |-+|+.+.
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~l~~----~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK-------ELCK----KYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH-------HHHH----HTTCSSSSEEEEEETTEEEE
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhccc-------hhhh----ccCCCCCCEEEEEECCcEEE
Confidence 44458899999999999888643 324555555544321 1222 4678999986 45776553
No 107
>PRK10387 glutaredoxin 2; Provisional
Probab=97.78 E-value=0.00011 Score=54.59 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=51.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE-EECCeEeeccHHHHHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV-FIGGTCVGGLESLVALH 124 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V-fI~G~~iGG~del~~l~ 124 (141)
+.+|+.+.||+|.+++-+|+..|++|+.++++..+.. ..+ +.++..+||++ .-||..+.....+....
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-------~~~----~~~p~~~VPvL~~~~g~~l~eS~aI~~yL 69 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-------TPI----RMIGQKQVPILQKDDGSYMPESLDIVHYI 69 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-------hHH----HhcCCcccceEEecCCeEecCHHHHHHHH
Confidence 3689999999999999999999999999888643311 112 24567899999 56788888777665554
Q ss_pred h
Q 032422 125 I 125 (141)
Q Consensus 125 ~ 125 (141)
+
T Consensus 70 ~ 70 (210)
T PRK10387 70 D 70 (210)
T ss_pred H
Confidence 3
No 108
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.74 E-value=0.0002 Score=51.95 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=36.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-------CCCceEEEecCCCCccCCcccHHHHHhhhCC---CCCCCCCEE--EECCeE
Q 032422 46 VIIFSRSSCCMCHVMKTLFATI-------GVHPTVIELDDHEISALPLVDHDESAHADSP---RNPAPAPAV--FIGGTC 113 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~-------gi~~~~idid~~~~~~~~~~l~~~l~~l~~~---~g~~tvP~V--fI~G~~ 113 (141)
++.|..+|||.|+.....|++. ++.+-.+|++..++ ..++. .. .+.+++|++ |.+|+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~---------la~~~-~V~~~~~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN---------VAEKF-RVSTSPLSKQLPTIILFQGGKE 120 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH---------HHHHc-CceecCCcCCCCEEEEEECCEE
Confidence 6669999999999998888643 23344555554431 11110 11 123448975 778987
Q ss_pred ee
Q 032422 114 VG 115 (141)
Q Consensus 114 iG 115 (141)
++
T Consensus 121 v~ 122 (152)
T cd02962 121 VA 122 (152)
T ss_pred EE
Confidence 64
No 109
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.74 E-value=9.9e-05 Score=54.56 Aligned_cols=59 Identities=14% Similarity=0.316 Sum_probs=37.4
Q ss_pred CEEE-EEcCCChhHHHHHHHHHhcCC---CceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEee
Q 032422 45 PVII-FSRSSCCMCHVMKTLFATIGV---HPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCVG 115 (141)
Q Consensus 45 ~Vvv-y~~~~Cp~C~~ak~~L~~~gi---~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~iG 115 (141)
.|+| |+.+||+.|+.+...|+.+-- ....+.|+.+.. . .. ...+..++|++ |-+|+.++
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~-------l~----~~f~v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-G-------AS----DEFDTDALPALLVYKGGELIG 149 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-h-------hH----HhCCCCCCCEEEEEECCEEEE
Confidence 4554 889999999999888865421 233444443321 1 11 24678899975 66998775
No 110
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.74 E-value=0.00016 Score=48.58 Aligned_cols=62 Identities=15% Similarity=0.294 Sum_probs=37.8
Q ss_pred HHHhcCCC--EEEEEcCCChhHHHHHHHHHhc------------CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCC
Q 032422 38 QRLISEHP--VIIFSRSSCCMCHVMKTLFATI------------GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAP 103 (141)
Q Consensus 38 ~~~~~~~~--Vvvy~~~~Cp~C~~ak~~L~~~------------gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~t 103 (141)
++.++.++ ++.|..+||++|++....+++. .+.+-.+|.+..+ +.. +..|..+
T Consensus 12 ~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~---------~l~----~~~~v~~ 78 (108)
T cd02996 12 DDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES---------DIA----DRYRINK 78 (108)
T ss_pred HHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH---------HHH----HhCCCCc
Confidence 34444443 4568999999999999888632 1233344444322 122 2468899
Q ss_pred CCEE--EECCe
Q 032422 104 APAV--FIGGT 112 (141)
Q Consensus 104 vP~V--fI~G~ 112 (141)
+|++ |-+|+
T Consensus 79 ~Ptl~~~~~g~ 89 (108)
T cd02996 79 YPTLKLFRNGM 89 (108)
T ss_pred CCEEEEEeCCc
Confidence 9987 44665
No 111
>PRK10853 putative reductase; Provisional
Probab=97.73 E-value=5e-05 Score=52.80 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=32.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHE 80 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~ 80 (141)
|++|+.++|.-|++|+++|++.|++|+.+|+-..+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCC
Confidence 78999999999999999999999999999997765
No 112
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.73 E-value=3.4e-05 Score=54.44 Aligned_cols=70 Identities=11% Similarity=0.235 Sum_probs=39.9
Q ss_pred chhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc-----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCC
Q 032422 30 EESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATI-----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPA 104 (141)
Q Consensus 30 ~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~-----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tv 104 (141)
+++..++++.+.+...++|++.+|||.|.+....|.+. ++++..+..|.+++ ...+... .|.+.+
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~e---------l~~~~lt-~g~~~I 98 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKE---------LMDQYLT-NGGRSI 98 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHH---------HTTTTTT--SS--S
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChh---------HHHHHHh-CCCeec
Confidence 35667778888888899999999999999888877643 56666666654432 1111111 578999
Q ss_pred CEEEE
Q 032422 105 PAVFI 109 (141)
Q Consensus 105 P~VfI 109 (141)
|++++
T Consensus 99 P~~I~ 103 (129)
T PF14595_consen 99 PTFIF 103 (129)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98754
No 113
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.72 E-value=0.00018 Score=47.67 Aligned_cols=55 Identities=15% Similarity=0.353 Sum_probs=35.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC------CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeE
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIG------VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTC 113 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~g------i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~ 113 (141)
++.|..+||++|+.....+++.. +.+-.+|++..+ . ..+ ..+..++|++ |-+|+.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~--~-------~~~----~~~v~~~Pt~~~~~~g~~ 84 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR--M-------LCR----SQGVNSYPSLYVFPSGMN 84 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH--H-------HHH----HcCCCccCEEEEEcCCCC
Confidence 44589999999999998886542 223345554322 1 122 3577899987 446753
No 114
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.71 E-value=0.0001 Score=46.19 Aligned_cols=67 Identities=9% Similarity=0.029 Sum_probs=46.2
Q ss_pred CChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE-CCeEeeccHHHHHHHh
Q 032422 53 SCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI-GGTCVGGLESLVALHI 125 (141)
Q Consensus 53 ~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI-~G~~iGG~del~~l~~ 125 (141)
.||||+++.-+|...|++|+...+...+..... .+.+. +.++..+||.+.. +|+.++....+.+..+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~---~~~~~---~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQK---PPEFL---ALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTT---CHBHH---HHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCcccc---Chhhh---ccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 499999999999999999998777432222110 01222 2577889999998 8898888777666543
No 115
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.71 E-value=0.00018 Score=46.99 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=38.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEe
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCV 114 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~i 114 (141)
-++.|+.+||+.|+++...|++. ...+..+.+|..... .+. +..+..++|++ |.+|+.+
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~--------~~~---~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP--------EIS---EKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH--------HHH---HhcCCccccEEEEEECCEEE
Confidence 34559999999999999888753 334555566543321 121 24678889975 5577754
No 116
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=3.8e-05 Score=51.60 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=63.3
Q ss_pred CEEEEEcCCChhH------HHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccH
Q 032422 45 PVIIFSRSSCCMC------HVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLE 118 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C------~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~d 118 (141)
.|.||+++.-+.- .++..+|+...+.++.+||...+.... ........+++-..|...-||||-++++-|+|+
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~-~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQ-WMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYE 81 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHH-HHHhcCChhhcCCCCCCCCcccccCccccccHH
Confidence 4667776654332 267788999999999999987664311 111112233334568888999999999999999
Q ss_pred HHHHHHhCCCcHHHHH
Q 032422 119 SLVALHIGGHLVPKLV 134 (141)
Q Consensus 119 el~~l~~~g~L~~~L~ 134 (141)
...+..++..|.+-|+
T Consensus 82 ~F~ea~E~ntl~eFL~ 97 (108)
T KOG4023|consen 82 LFFEAVEQNTLQEFLG 97 (108)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9988888888887775
No 117
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.67 E-value=0.00026 Score=46.00 Aligned_cols=61 Identities=15% Similarity=0.276 Sum_probs=37.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE--CCeEee
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATI----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI--GGTCVG 115 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI--~G~~iG 115 (141)
.-++.|..+||++|+.+...|.+. +-....+.+|.+.... ..+ ..|..++|++++ +|+.+.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-------~~~----~~~v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD-------IAA----KYGIRSIPTLLLFKNGKEVD 82 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH-------HHH----HcCCCcCCEEEEEeCCcEee
Confidence 345568899999999998887653 3224444444333211 222 467889998755 776543
No 118
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.67 E-value=0.0004 Score=44.23 Aligned_cols=70 Identities=9% Similarity=0.066 Sum_probs=49.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEEC---CeEeeccHHHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIG---GTCVGGLESLVA 122 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~---G~~iGG~del~~ 122 (141)
+.+|+.+. |+|.+++-+|...|++|+.+.++....... .+.+. +.+...++|.+..+ |..+.....+..
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~----~~~~~---~~~p~~~vP~l~~~~~~g~~l~eS~aI~~ 73 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQK----KPEFL---KINPNGRIPAIVDHNGTPLTVFESGAILL 73 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCccc----CHHHH---HhCcCCCCCEEEeCCCCceEEEcHHHHHH
Confidence 57899886 999999999999999999888875321111 11232 24667899999887 677766555544
Q ss_pred H
Q 032422 123 L 123 (141)
Q Consensus 123 l 123 (141)
.
T Consensus 74 y 74 (81)
T cd03048 74 Y 74 (81)
T ss_pred H
Confidence 3
No 119
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.67 E-value=0.00017 Score=54.98 Aligned_cols=75 Identities=19% Similarity=0.402 Sum_probs=54.2
Q ss_pred hhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHH----hcCCCceEEEecCCCCccCCccc--HHHHHhhhCCCCCCCC
Q 032422 31 ESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFA----TIGVHPTVIELDDHEISALPLVD--HDESAHADSPRNPAPA 104 (141)
Q Consensus 31 ~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~----~~gi~~~~idid~~~~~~~~~~l--~~~l~~l~~~~g~~tv 104 (141)
.+-.+.++++.+...+++|..++||||+....+|. ++|++...|++|........+.. .... +..|...+
T Consensus 109 ~~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~----~~l~v~~~ 184 (215)
T PF13728_consen 109 QKRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQA----KRLGVKVT 184 (215)
T ss_pred HHHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHH----HHcCCCcC
Confidence 34455678888899999999999999998887775 57899899999875433332211 1112 24678899
Q ss_pred CEEEE
Q 032422 105 PAVFI 109 (141)
Q Consensus 105 P~VfI 109 (141)
|.+|+
T Consensus 185 Pal~L 189 (215)
T PF13728_consen 185 PALFL 189 (215)
T ss_pred CEEEE
Confidence 99887
No 120
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.66 E-value=0.00017 Score=51.44 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=39.6
Q ss_pred HHHHhcCC-CE-EEEEcCCChhHHHHHHHHHhc----C--CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEE
Q 032422 37 IQRLISEH-PV-IIFSRSSCCMCHVMKTLFATI----G--VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVF 108 (141)
Q Consensus 37 l~~~~~~~-~V-vvy~~~~Cp~C~~ak~~L~~~----g--i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~Vf 108 (141)
+++.+... ++ +.|+.+||++|+.....|.+. + +.+..+++|.... .+..+ ..+...+|+++
T Consensus 13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~-------~~~~~----~~~V~~iPt~v 81 (142)
T cd02950 13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW-------LPEID----RYRVDGIPHFV 81 (142)
T ss_pred HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc-------HHHHH----HcCCCCCCEEE
Confidence 34444433 33 358999999999998888643 2 3444555553221 11222 46788999864
Q ss_pred -E--CCeEe
Q 032422 109 -I--GGTCV 114 (141)
Q Consensus 109 -I--~G~~i 114 (141)
+ +|+.+
T Consensus 82 ~~~~~G~~v 90 (142)
T cd02950 82 FLDREGNEE 90 (142)
T ss_pred EECCCCCEE
Confidence 4 47644
No 121
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.66 E-value=0.00043 Score=43.57 Aligned_cols=69 Identities=9% Similarity=0.009 Sum_probs=50.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
.+|+.+.+|+|+++.-+|+..|++|+.+.++..+.... .+.+. +......+|++..+|..+.....+..
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~----~~~~~---~~~p~~~vP~L~~~~~~l~eS~aI~~ 70 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQL----TPEFK---KINPFGKVPAIVDGDFTLAESVAILR 70 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcC----CHHHH---HhCcCCCCCEEEECCEEEEcHHHHHH
Confidence 58999999999999999999999999988875432111 11222 24667899999888876655544443
No 122
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.65 E-value=0.00053 Score=42.67 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=50.9
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l 123 (141)
++|..+.|+.|.+++-+|+..|++|+.+.++...... ..+ ...+...++|.+..+|..+.....+...
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~------~~~---~~~~p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPE------LDL---KPTLPFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhh------hhh---ccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence 5788899999999999999999999998887532110 112 2356788999999998887766655443
No 123
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.63 E-value=0.00015 Score=47.60 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=38.4
Q ss_pred HHHHhcCCCE-EEEEcCCChhHHHHHHHHHhc----C---CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE-
Q 032422 37 IQRLISEHPV-IIFSRSSCCMCHVMKTLFATI----G---VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV- 107 (141)
Q Consensus 37 l~~~~~~~~V-vvy~~~~Cp~C~~ak~~L~~~----g---i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V- 107 (141)
+++.+...++ +.|+.+||+.|+.....|.+. + ..+....+|.+.... ..+ ..+..++|++
T Consensus 10 f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~-------~~~----~~~v~~~Pt~~ 78 (102)
T cd03005 10 FDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE-------LCS----EFQVRGYPTLL 78 (102)
T ss_pred HHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh-------hHh----hcCCCcCCEEE
Confidence 3334433344 458999999999988777543 1 134445555333211 112 3577899986
Q ss_pred -EECCeEe
Q 032422 108 -FIGGTCV 114 (141)
Q Consensus 108 -fI~G~~i 114 (141)
|-+|+.+
T Consensus 79 ~~~~g~~~ 86 (102)
T cd03005 79 LFKDGEKV 86 (102)
T ss_pred EEeCCCee
Confidence 4466543
No 124
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.63 E-value=0.00013 Score=54.34 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=26.8
Q ss_pred CEEEEEcCCChhHHHHHHHH----HhcCCCceEEEecCC
Q 032422 45 PVIIFSRSSCCMCHVMKTLF----ATIGVHPTVIELDDH 79 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L----~~~gi~~~~idid~~ 79 (141)
++++|+.+|||+|++....| +++|+.+.-|.+|..
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~ 110 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ 110 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 38999999999999885444 556777777777755
No 125
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.61 E-value=0.00028 Score=47.22 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=33.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCC---ceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVH---PTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI 109 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~---~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI 109 (141)
-++.|+.+||++|+.....|++..-. ...+.||.+... . .+. +..+..++|++++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~------~-~l~---~~~~V~~~PT~~l 78 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIK------P-SLL---SRYGVVGFPTILL 78 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCC------H-HHH---HhcCCeecCEEEE
Confidence 34459999999999999888754211 234445433110 1 121 2467889998643
No 126
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.61 E-value=0.00025 Score=46.39 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=37.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhc----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEE--ECCeEe
Q 032422 46 VIIFSRSSCCMCHVMKTLFATI----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVF--IGGTCV 114 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~Vf--I~G~~i 114 (141)
++.|+.+||+.|+.....|.+. .-.+..+.||.+... .+. +..+..++|+++ -+|+.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~--------~l~---~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP--------QIA---QQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH--------HHH---HHcCCCCCCEEEEEeCCEEe
Confidence 4558999999999998888653 223444555543321 222 246788999864 477654
No 127
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.60 E-value=0.00019 Score=49.50 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=41.8
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCCC------ceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCe
Q 032422 43 EHPVIIFSRSS--CCMCHVMKTLFATIGVH------PTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGT 112 (141)
Q Consensus 43 ~~~Vvvy~~~~--Cp~C~~ak~~L~~~gi~------~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~ 112 (141)
...|+.|+.+| ||.|+.+..+|++..-+ +-.+|++..+ .+. ...+..++|++ |-+|+
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----------~la---~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----------ALA---ARFGVLRTPALLFFRDGR 94 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----------HHH---HHcCCCcCCEEEEEECCE
Confidence 44566688886 99999999999765332 3344555433 222 24789999986 66998
Q ss_pred Eeecc
Q 032422 113 CVGGL 117 (141)
Q Consensus 113 ~iGG~ 117 (141)
.++..
T Consensus 95 ~v~~~ 99 (111)
T cd02965 95 YVGVL 99 (111)
T ss_pred EEEEE
Confidence 77654
No 128
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.58 E-value=0.00023 Score=56.11 Aligned_cols=73 Identities=21% Similarity=0.416 Sum_probs=45.3
Q ss_pred HHHHHHhcCCCEEEEEcCCChhHHHHHHHHHh----cCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE
Q 032422 35 ARIQRLISEHPVIIFSRSSCCMCHVMKTLFAT----IGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI 109 (141)
Q Consensus 35 ~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~----~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI 109 (141)
..++++.+..-++.|..+|||+|+.....|.+ +|+.+..+++|.......+....+ ..+.+..|..++|++|+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d--~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPD--AGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCC--HHHHHHcCCCcCCeEEE
Confidence 34566666666777999999999998887754 566666777776432111110000 01112468899998755
No 129
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.57 E-value=0.00028 Score=49.16 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=33.5
Q ss_pred EEEEEc-------CCChhHHHHHHHHHh----cC--CCceEEEecCCCCccCCcccHHHHHhhhCCCCCC-CCCEEEE
Q 032422 46 VIIFSR-------SSCCMCHVMKTLFAT----IG--VHPTVIELDDHEISALPLVDHDESAHADSPRNPA-PAPAVFI 109 (141)
Q Consensus 46 Vvvy~~-------~~Cp~C~~ak~~L~~----~g--i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~-tvP~VfI 109 (141)
++.|+. +|||.|+.+...|++ .. +.+-.+|++..+..... ...+. ...+.. ++|++.+
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~---~~~~~---~~~~I~~~iPT~~~ 96 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDP---NNPFR---TDPKLTTGVPTLLR 96 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCc---chhhH---hccCcccCCCEEEE
Confidence 445888 899999988877754 33 44555666554311100 01222 234556 9998744
No 130
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.56 E-value=0.00031 Score=48.39 Aligned_cols=60 Identities=8% Similarity=0.063 Sum_probs=37.0
Q ss_pred hcCCCE--EEEEcCCChhHHHHHHHHHhcC------CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EEC
Q 032422 41 ISEHPV--IIFSRSSCCMCHVMKTLFATIG------VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIG 110 (141)
Q Consensus 41 ~~~~~V--vvy~~~~Cp~C~~ak~~L~~~g------i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~ 110 (141)
++.+++ +.|..+||++|+.+...+++.. +.+-.+|++..++ ... +..+..++|++ |.+
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~---------l~~---~~~~I~~~PTl~lf~~ 93 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG---------KCR---KQKHFFYFPVIHLYYR 93 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH---------HHH---HhcCCcccCEEEEEEC
Confidence 444433 3499999999999998887643 2233445443321 111 13577889976 667
Q ss_pred Ce
Q 032422 111 GT 112 (141)
Q Consensus 111 G~ 112 (141)
|+
T Consensus 94 g~ 95 (113)
T cd03006 94 SR 95 (113)
T ss_pred Cc
Confidence 75
No 131
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00026 Score=45.42 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=50.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcc--c---HHHHHhhhCCCCCCCCCEEEEC-CeEeeccHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLV--D---HDESAHADSPRNPAPAPAVFIG-GTCVGGLES 119 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~--l---~~~l~~l~~~~g~~tvP~VfI~-G~~iGG~de 119 (141)
-++|+...||.|..+++.|++.+++|++++|..+-.. ..+. + ..++.+. +..|+-.+|.+..+ |+.|-| ++
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~N-lKrFl~lRDs~~~Fd~v-k~~gyiGIPall~~d~~vVl~-~D 80 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMAN-LKRFLHLRDSRPEFDEV-KSNGYIGIPALLTDDGKVVLG-DD 80 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhh-HHHHHhhhccchhHHhh-hhcCcccceEEEeCCCcEEEe-ch
Confidence 3789999999999999999999999999999865321 0000 0 1233332 13578899998774 566655 44
Q ss_pred HH
Q 032422 120 LV 121 (141)
Q Consensus 120 l~ 121 (141)
+.
T Consensus 81 l~ 82 (85)
T COG4545 81 LS 82 (85)
T ss_pred hh
Confidence 43
No 132
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.54 E-value=0.00041 Score=53.46 Aligned_cols=31 Identities=19% Similarity=0.582 Sum_probs=23.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc---CCCceEE
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATI---GVHPTVI 74 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~---gi~~~~i 74 (141)
..|++|+-+.||||+++.+.+.++ ++.+.++
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 458899999999999998888764 4554444
No 133
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.50 E-value=0.00011 Score=49.39 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=16.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHH
Q 032422 43 EHPVIIFSRSSCCMCHVMKTLFA 65 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~C~~ak~~L~ 65 (141)
...|++|+.+|||||+++.+.+.
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHH
Confidence 34577899999999999976665
No 134
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00055 Score=46.73 Aligned_cols=62 Identities=19% Similarity=0.448 Sum_probs=40.7
Q ss_pred CCEEE-EEcCCChhHHHHHHHHHhcCCCc-----eEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCe---
Q 032422 44 HPVII-FSRSSCCMCHVMKTLFATIGVHP-----TVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGT--- 112 (141)
Q Consensus 44 ~~Vvv-y~~~~Cp~C~~ak~~L~~~gi~~-----~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~--- 112 (141)
..||+ |+.+||+.|+.+...+.++..+| -.+|+|+ .. +..+ ..+...+|++ +-+|+
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde--~~-------~~~~----~~~V~~~PTf~f~k~g~~~~ 88 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE--LE-------EVAK----EFNVKAMPTFVFYKGGEEVD 88 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc--CH-------hHHH----hcCceEeeEEEEEECCEEEE
Confidence 44444 89999999999999998765444 4566665 11 1222 3678899986 44665
Q ss_pred -EeeccH
Q 032422 113 -CVGGLE 118 (141)
Q Consensus 113 -~iGG~d 118 (141)
++|+..
T Consensus 89 ~~vGa~~ 95 (106)
T KOG0907|consen 89 EVVGANK 95 (106)
T ss_pred EEecCCH
Confidence 455544
No 135
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.48 E-value=0.00084 Score=50.34 Aligned_cols=68 Identities=10% Similarity=0.152 Sum_probs=51.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
.+.+|+.+.||+|.+++-+|...|++|+.+.++... .. +.+. +.+-...||++..||..+--..-+..
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~-~~------~~~~---~~nP~g~VPvL~~~g~~l~ES~AIl~ 77 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDN-LP------QDLI---DLNPYQSVPTLVDRELTLYESRIIME 77 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCccc-CC------HHHH---HhCCCCCCCEEEECCEEeeCHHHHHH
Confidence 478999999999999999999999999999887532 11 1232 24667899999998877655544433
No 136
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.47 E-value=0.00056 Score=49.59 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=29.5
Q ss_pred hcCCCEEEEEcCCChhHHHHHHHHHh----cCCCceEEEecCC
Q 032422 41 ISEHPVIIFSRSSCCMCHVMKTLFAT----IGVHPTVIELDDH 79 (141)
Q Consensus 41 ~~~~~Vvvy~~~~Cp~C~~ak~~L~~----~gi~~~~idid~~ 79 (141)
.+...++.|+.+|||+|++....|.+ +++.+..+++|..
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 35667889999999999988887764 4666666777654
No 137
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.46 E-value=0.00044 Score=51.88 Aligned_cols=90 Identities=12% Similarity=0.233 Sum_probs=50.7
Q ss_pred HHHHHHHhcC---CCEEE-EEcCCChhHHHHHHHHHhcCCC---ceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCE
Q 032422 34 EARIQRLISE---HPVII-FSRSSCCMCHVMKTLFATIGVH---PTVIELDDHEISALPLVDHDESAHADSPRNPAPAPA 106 (141)
Q Consensus 34 ~~~l~~~~~~---~~Vvv-y~~~~Cp~C~~ak~~L~~~gi~---~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~ 106 (141)
.++.+++... ..||| |+.+||+.|+.+...|.++... ...+.|+.+.. . ...+...+|+
T Consensus 90 ~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~----------~----~~~~i~~lPT 155 (192)
T cd02988 90 PDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC----------I----PNYPDKNLPT 155 (192)
T ss_pred HHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh----------H----hhCCCCCCCE
Confidence 4455555543 23555 8999999999999988765322 23444443221 1 1367889998
Q ss_pred E--EECCeEee---ccHHHHH-HHhCCCcHHHHHhcC
Q 032422 107 V--FIGGTCVG---GLESLVA-LHIGGHLVPKLVEIG 137 (141)
Q Consensus 107 V--fI~G~~iG---G~del~~-l~~~g~L~~~L~~~g 137 (141)
+ |-||+.++ |+.++.. -.....|...|.+.|
T Consensus 156 lliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~g 192 (192)
T cd02988 156 ILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG 192 (192)
T ss_pred EEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhcC
Confidence 6 66998654 3333210 112234555665544
No 138
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.46 E-value=0.00035 Score=46.40 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=33.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc----C--CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECC
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI----G--VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGG 111 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~----g--i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G 111 (141)
-++.|..+||+.|++....+++. + +.+-.+|.+..+ .+. +..|..++|++ |-+|
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~----------~~~---~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE----------SLC---QQANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH----------HHH---HHcCCCcccEEEEEcCC
Confidence 34458999999999998888653 2 333344444322 121 23678999986 4465
No 139
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.46 E-value=0.0011 Score=42.53 Aligned_cols=63 Identities=13% Similarity=0.260 Sum_probs=38.5
Q ss_pred HHHHHhcCC--CEEEEEcCCChhHHHHHHHHHh----c--CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE
Q 032422 36 RIQRLISEH--PVIIFSRSSCCMCHVMKTLFAT----I--GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV 107 (141)
Q Consensus 36 ~l~~~~~~~--~Vvvy~~~~Cp~C~~ak~~L~~----~--gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V 107 (141)
.+.+++... -+++|+.+||++|+.+...+.+ . +-.+..+.++.+... .+. +..+...+|++
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~---~~~~i~~~Pt~ 75 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN--------DLC---SEYGVRGYPTI 75 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH--------HHH---HhCCCCCCCEE
Confidence 344444443 5566999999999999888864 2 233445555433311 122 24688999987
Q ss_pred EE
Q 032422 108 FI 109 (141)
Q Consensus 108 fI 109 (141)
++
T Consensus 76 ~~ 77 (101)
T cd02961 76 KL 77 (101)
T ss_pred EE
Confidence 44
No 140
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.45 E-value=0.0011 Score=44.69 Aligned_cols=56 Identities=11% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc-----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEE
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATI-----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVF 108 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~-----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~Vf 108 (141)
.-++.|..+|||+|++....|.+. +..+....|+.+.+.. .... +..+...+|+++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~------~~~~---~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQR------EFAK---EELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccch------hhHH---hhcCCCcCCEEE
Confidence 445569999999999999888653 2223333443322111 0111 136788999874
No 141
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.43 E-value=0.00035 Score=46.54 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=33.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc----C--CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI----G--VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI 109 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~----g--i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI 109 (141)
-++.|..+||++|++....+++. + +.+-.+|++..+.. +..+ ..+..++|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~-------~~~~----~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNK-------PLCG----KYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccH-------HHHH----HcCCCcCCEEEE
Confidence 46669999999999988777653 2 23334455432211 1222 367889998754
No 142
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.42 E-value=0.0014 Score=41.17 Aligned_cols=68 Identities=9% Similarity=0.046 Sum_probs=49.3
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEEC-CeEeeccHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIG-GTCVGGLESLVA 122 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~-G~~iGG~del~~ 122 (141)
.+|+.+.||+|.+++-+|+..|++|+.++++.... .. .+.+. +.+...++|++..+ |..+.....+.+
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~----~~~~~---~~nP~~~vP~L~~~~g~~l~es~aI~~ 70 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NK----TPEFL---KKFPLGKVPAFEGADGFCLFESNAIAY 70 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cC----CHHHH---HhCCCCCCCEEEcCCCCEEeeHHHHHH
Confidence 47888999999999999999999999998886432 11 11233 25677899999985 766655444433
No 143
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.35 E-value=0.002 Score=40.13 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=49.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESL 120 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del 120 (141)
.+|+.+..|+|.+++-+|+..|++|+.++++....... .+.+. +.+...++|.+..+|..+.....+
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~----~~~~~---~~nP~~~vP~L~~~~~~l~eS~aI 68 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLD----TPEFL---AMNPNGRVPVLEDGDFVLWESNAI 68 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEecccccccc----CHHHH---hhCCCCCCCEEEECCEEEECHHHH
Confidence 57999999999999999999999999988874321111 11233 256678999998888776555443
No 144
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.34 E-value=0.00036 Score=45.61 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=32.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC------CceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGV------HPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI 109 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi------~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI 109 (141)
-++.|+.+||+.|+.....|.+..- .+....+|.+... .+. +..+...+|++++
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~---~~~~i~~~P~~~~ 75 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK--------DLA---SRFGVSGFPTIKF 75 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH--------HHH---HhCCCCcCCEEEE
Confidence 4667999999999998777754311 1333333332211 121 2467899998844
No 145
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.31 E-value=0.001 Score=43.57 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=34.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc----C--CCceEEEecCCC-CccCCcccHHHHHhhhCCCCCCCCCEEEE
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI----G--VHPTVIELDDHE-ISALPLVDHDESAHADSPRNPAPAPAVFI 109 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~----g--i~~~~idid~~~-~~~~~~~l~~~l~~l~~~~g~~tvP~VfI 109 (141)
-++.|+.+||++|++....+.+. . -.+....+|... ... ..+ ..+..++|++++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-------~~~----~~~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD-------LAK----KYGVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh-------hHH----hCCCCCcCEEEE
Confidence 36679999999999888887542 2 235555665443 221 222 357789998754
No 146
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.30 E-value=0.00085 Score=44.08 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=32.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhc----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE
Q 032422 46 VIIFSRSSCCMCHVMKTLFATI----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI 109 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI 109 (141)
++.|+.+||++|++....|.+. .-.+....+|.+.... ..+ ..+..++|++++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-------~~~----~~~i~~~P~~~~ 78 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS-------LAQ----QYGVRGFPTIKV 78 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH-------HHH----HCCCCccCEEEE
Confidence 5568899999999998877653 2223444444332111 222 457889998733
No 147
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.26 E-value=0.0014 Score=51.42 Aligned_cols=77 Identities=22% Similarity=0.303 Sum_probs=54.2
Q ss_pred hhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHH----HhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCE
Q 032422 31 ESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLF----ATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPA 106 (141)
Q Consensus 31 ~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L----~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~ 106 (141)
++-.+.++++.+...+++|..+.||||.+.-..| +++|++...|++|.......++...+. ...+..|...+|.
T Consensus 139 ~~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~--gqa~~l~v~~~Pa 216 (256)
T TIGR02739 139 EQKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDS--GQAQHLGVKYFPA 216 (256)
T ss_pred HHHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCCh--HHHHhcCCccCce
Confidence 3445668888899999999999999999887777 467999999999986433322211111 0112357888999
Q ss_pred EEE
Q 032422 107 VFI 109 (141)
Q Consensus 107 VfI 109 (141)
+|+
T Consensus 217 l~L 219 (256)
T TIGR02739 217 LYL 219 (256)
T ss_pred EEE
Confidence 877
No 148
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.24 E-value=0.0016 Score=50.82 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHH----hcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEE
Q 032422 33 SEARIQRLISEHPVIIFSRSSCCMCHVMKTLFA----TIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVF 108 (141)
Q Consensus 33 ~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~----~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~Vf 108 (141)
-.+.++++.+...+++|..+.||||++.-.+|. ++|++...+.+|.......++...+- .+ .+..|...+|.+|
T Consensus 134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~-gq-a~~l~v~~~PAl~ 211 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQ-GQ-AQRLGVKYFPALM 211 (248)
T ss_pred HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccCh-hH-HHhcCCcccceEE
Confidence 355588888999999999999999998877775 57898888999875433322211111 00 0245778899988
Q ss_pred E
Q 032422 109 I 109 (141)
Q Consensus 109 I 109 (141)
+
T Consensus 212 L 212 (248)
T PRK13703 212 L 212 (248)
T ss_pred E
Confidence 7
No 149
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.19 E-value=0.003 Score=48.87 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=48.8
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHHh
Q 032422 52 SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHI 125 (141)
Q Consensus 52 ~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~~ 125 (141)
..||+|+++.-.|...|++|+.+.+|..... +.+.+ .+...++|++..+|..+.....+.+...
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~-------~~fl~---inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKP-------EDLQN---LAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCC-------HHHHH---HCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 4599999999999999999999998865321 12332 4666899999889988887776665544
No 150
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.16 E-value=0.003 Score=39.63 Aligned_cols=69 Identities=7% Similarity=0.159 Sum_probs=47.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEEC-CeEeeccHHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIG-GTCVGGLESLVAL 123 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~-G~~iGG~del~~l 123 (141)
.+|+.+.| .|.+++-+|...|++|+.++++....... .+++. +.+....+|++..+ |..+.....+...
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~----~~~~~---~~np~~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQK----GADYL---AINPKGQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccC----CHhHH---HhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence 57887776 48899999999999999988876442111 11233 25678899999887 7666655554443
No 151
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.15 E-value=0.0011 Score=43.57 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=34.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc----C--CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEe
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI----G--VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCV 114 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~----g--i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~i 114 (141)
-++.|+.+|||+|+.....+.+. . -.+....+|...+.. ....+ ..|..++|++ |-+|+.+
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~~~~~----~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-----DALKE----EYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-----HHHHH----hCCCccccEEEEEeCCCee
Confidence 35569999999999987666432 1 223343444332111 11222 4678899986 4466644
No 152
>PRK15113 glutathione S-transferase; Provisional
Probab=97.11 E-value=0.0044 Score=46.51 Aligned_cols=70 Identities=7% Similarity=-0.006 Sum_probs=50.4
Q ss_pred CCEEEEEcC--CChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHH
Q 032422 44 HPVIIFSRS--SCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESL 120 (141)
Q Consensus 44 ~~Vvvy~~~--~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del 120 (141)
..+++|+.+ .||+|.++.-+|...|++|+.+.++....... .+++. +.+-...||++..||..+--..-+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~----~~~~~---~~nP~g~VP~L~~~~~~l~ES~aI 75 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHL----QPTYQ---GYSLTRRVPTLQHDDFELSESSAI 75 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCcccc----CHHHH---hcCCCCCCCEEEECCEEEecHHHH
Confidence 457889975 69999999999999999999998876432111 12232 356678999999998766444333
No 153
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.01 E-value=0.0067 Score=37.68 Aligned_cols=69 Identities=9% Similarity=0.095 Sum_probs=48.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l 123 (141)
.+|+.+. +.|.+++-+|...|++|+.+.++....... ...+. +.+....+|.+..+|..+.....+...
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~----~~~~~---~~~p~~~vP~l~~~g~~l~es~aI~~y 70 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQA----PPEYL---AINPLGKVPVLVDGDLVLTESAAIILY 70 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccC----CHHHH---hcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 4677665 678999999999999999988875321111 11232 256778999999999888777665554
No 154
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.00 E-value=0.0068 Score=42.89 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=33.8
Q ss_pred CcchhHHHHHHHHhcCCCEE--EEEcCCChhHHHHHHHH-Hh------cCCCceEEEecCC
Q 032422 28 DGEESSEARIQRLISEHPVI--IFSRSSCCMCHVMKTLF-AT------IGVHPTVIELDDH 79 (141)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~Vv--vy~~~~Cp~C~~ak~~L-~~------~gi~~~~idid~~ 79 (141)
.+..+..+.++.+.+.++.+ .|+++|||+|++.++.. .. .+-.|..+.++.+
T Consensus 7 ~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d 67 (130)
T cd02960 7 IWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHE 67 (130)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEec
Confidence 34346778888877765444 37889999999987654 22 2234665566543
No 155
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.99 E-value=0.0037 Score=46.55 Aligned_cols=32 Identities=19% Similarity=0.464 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh--cCCCceEE
Q 032422 43 EHPVIIFSRSSCCMCHVMKTLFAT--IGVHPTVI 74 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~C~~ak~~L~~--~gi~~~~i 74 (141)
...|++|+.+.||||+++.+.+.. .++.+.++
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~ 111 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIF 111 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEE
Confidence 357888999999999999998874 34444433
No 156
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.98 E-value=0.00096 Score=45.42 Aligned_cols=32 Identities=13% Similarity=0.405 Sum_probs=25.6
Q ss_pred EEcCCChhHHHHHHHHHhcCCCceEEEecCCC
Q 032422 49 FSRSSCCMCHVMKTLFATIGVHPTVIELDDHE 80 (141)
Q Consensus 49 y~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~ 80 (141)
|+.+.|.-|++|.++|++.|++|+.+|+...+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCC
Confidence 88999999999999999999999999998755
No 157
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.91 E-value=0.0019 Score=49.66 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=36.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEe
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATI----GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCV 114 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~i 114 (141)
.-++.|+.+|||+|++....+++. +-......+|..... .+. +..+..++|++ |-+|+.+
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~--------~l~---~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL--------NLA---KRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH--------HHH---HHcCCCcCCEEEEEECCEEE
Confidence 345669999999999999888654 212233333322211 122 24678899976 4578755
No 158
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=96.89 E-value=0.0024 Score=41.77 Aligned_cols=23 Identities=13% Similarity=0.515 Sum_probs=18.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
-++.|..+||++|+.....|.+.
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~ 43 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEEL 43 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHH
Confidence 35569999999999998888653
No 159
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.85 E-value=0.004 Score=44.70 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=25.5
Q ss_pred CEEE-EEcCCChhHHHHHHHHHhcC------CCceEEEecCCC
Q 032422 45 PVII-FSRSSCCMCHVMKTLFATIG------VHPTVIELDDHE 80 (141)
Q Consensus 45 ~Vvv-y~~~~Cp~C~~ak~~L~~~g------i~~~~idid~~~ 80 (141)
.|+| |+.+||+.|+.+-..|++.. +.+-.+|+|+.+
T Consensus 25 lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~ 67 (142)
T PLN00410 25 LVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP 67 (142)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH
Confidence 3444 99999999999999998653 223456666544
No 160
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.84 E-value=0.017 Score=36.10 Aligned_cols=64 Identities=11% Similarity=0.002 Sum_probs=46.5
Q ss_pred cCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 51 RSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 51 ~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
...||+|.+++-+|+..|++|+.+.++.... .. .+.+. +.+....+|.+..+|..+.....+..
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~----~~~~~---~~nP~g~vP~L~~~g~~l~eS~aI~~ 70 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DT----RARIL---EFSPTGKVPVLVDGGIVVWDSLAICE 70 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cc----cHHHH---hhCCCCcCCEEEECCEEEEcHHHHHH
Confidence 3569999999999999999999988875431 11 12333 25667899999999987766655443
No 161
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.84 E-value=0.0037 Score=43.54 Aligned_cols=68 Identities=6% Similarity=0.122 Sum_probs=40.5
Q ss_pred HHHHHHhcCC--CEEE-EEcCCCh--hHH--HH--------HHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCC
Q 032422 35 ARIQRLISEH--PVII-FSRSSCC--MCH--VM--------KTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPR 99 (141)
Q Consensus 35 ~~l~~~~~~~--~Vvv-y~~~~Cp--~C~--~a--------k~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~ 99 (141)
+.+++.+..+ .+++ |...||+ +|+ .. .++|+..++.+-.+|+|..+ .+. +..
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~----------~La---~~~ 83 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA----------KVA---KKL 83 (120)
T ss_pred hhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH----------HHH---HHc
Confidence 3445555443 4555 5555665 498 22 33444456777777777554 222 247
Q ss_pred CCCCCCEE--EECCeEee
Q 032422 100 NPAPAPAV--FIGGTCVG 115 (141)
Q Consensus 100 g~~tvP~V--fI~G~~iG 115 (141)
|.+++|++ |-||+.+.
T Consensus 84 ~I~~iPTl~lfk~G~~v~ 101 (120)
T cd03065 84 GLDEEDSIYVFKDDEVIE 101 (120)
T ss_pred CCccccEEEEEECCEEEE
Confidence 88999986 77998664
No 162
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.80 E-value=0.0028 Score=43.31 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=18.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
-++.|+.+||+.|+.....+.+.
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~l 44 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKL 44 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHH
Confidence 34458899999999998887653
No 163
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=96.78 E-value=0.01 Score=37.56 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=43.3
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHHh
Q 032422 52 SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHI 125 (141)
Q Consensus 52 ~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~~ 125 (141)
+.+|+|-++..+|.-.|++|+.+... ++. .+....+|.+..+|+.|+|++.+.+..+
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~----------------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPW----------------RSPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC-CCC----------------CCCCCccCEEEECCEEecChHHHHHHHH
Confidence 34799999999999999999765332 221 1334569999999999999988777543
No 164
>PTZ00062 glutaredoxin; Provisional
Probab=96.77 E-value=0.0099 Score=45.12 Aligned_cols=65 Identities=8% Similarity=0.029 Sum_probs=42.2
Q ss_pred HHHHHHHhc--CC-CEEEEEcCCChhHHHHHHHHHhcCCC---ceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE
Q 032422 34 EARIQRLIS--EH-PVIIFSRSSCCMCHVMKTLFATIGVH---PTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV 107 (141)
Q Consensus 34 ~~~l~~~~~--~~-~Vvvy~~~~Cp~C~~ak~~L~~~gi~---~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V 107 (141)
.+.+.++++ .. .|+.|+.+|||.|+.+...|.++.-+ +..+.|+.+ .+...+|++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------------~~V~~vPtf 66 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------------DANNEYGVF 66 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------------cCcccceEE
Confidence 344555555 23 44456699999999999999876433 455566532 346788965
Q ss_pred --EECCeEeecc
Q 032422 108 --FIGGTCVGGL 117 (141)
Q Consensus 108 --fI~G~~iGG~ 117 (141)
|-||+.|+.+
T Consensus 67 v~~~~g~~i~r~ 78 (204)
T PTZ00062 67 EFYQNSQLINSL 78 (204)
T ss_pred EEEECCEEEeee
Confidence 5588877643
No 165
>PLN02473 glutathione S-transferase
Probab=96.75 E-value=0.016 Score=43.21 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=51.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
+.+|+.+.||+|.+++-+|...|++|+.+.++....... -.+.++ .+....||++..||..+....-+..
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~---~~~~~~----~nP~g~vP~L~~~g~~l~ES~aI~~ 72 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQK---KPEHLL----RQPFGQVPAIEDGDLKLFESRAIAR 72 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccC---CHHHHh----hCCCCCCCeEEECCEEEEehHHHHH
Confidence 568999999999999999999999999888775431111 112332 4567899999999988876655544
No 166
>PLN02378 glutathione S-transferase DHAR1
Probab=96.75 E-value=0.0071 Score=45.50 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 52 SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 52 ~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
..||||.++.-+|+..|++|+.+.++.... . ++.+ +.+...+||++..||..+.-..-+..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~-----~~~l----~inP~G~VPvL~~~~~~l~ES~aI~~ 78 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-P-----QWFL----DISPQGKVPVLKIDDKWVTDSDVIVG 78 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-C-----HHHH----HhCCCCCCCEEEECCEEecCHHHHHH
Confidence 459999999999999999999888876431 1 1233 25667899999998877655544443
No 167
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.74 E-value=0.0048 Score=44.45 Aligned_cols=25 Identities=8% Similarity=0.313 Sum_probs=18.8
Q ss_pred cCCCEEE-EEcCCChhHHHHHHHHHh
Q 032422 42 SEHPVII-FSRSSCCMCHVMKTLFAT 66 (141)
Q Consensus 42 ~~~~Vvv-y~~~~Cp~C~~ak~~L~~ 66 (141)
+...|++ |+.+|||.|++....|.+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHH
Confidence 3334444 899999999999888864
No 168
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.68 E-value=0.0094 Score=51.64 Aligned_cols=74 Identities=12% Similarity=0.256 Sum_probs=40.5
Q ss_pred hhHHHHHHHHhcC-CCEEE-EEcCCChhHHHHHHH-H------Hhc-CCCceEEEecCCCCccCCcccHHHHHhhhCCCC
Q 032422 31 ESSEARIQRLISE-HPVII-FSRSSCCMCHVMKTL-F------ATI-GVHPTVIELDDHEISALPLVDHDESAHADSPRN 100 (141)
Q Consensus 31 ~~~~~~l~~~~~~-~~Vvv-y~~~~Cp~C~~ak~~-L------~~~-gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g 100 (141)
++.++.+++.... .+|+| |+.+||+.|+..+.. + ++. ++.+-.+|++.++.. .++.. +..+
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~-----~~~l~----~~~~ 531 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAE-----DVALL----KHYN 531 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChh-----hHHHH----HHcC
Confidence 4455566655543 34444 899999999987654 2 122 233334455433211 11222 2468
Q ss_pred CCCCCEEEE---CCeE
Q 032422 101 PAPAPAVFI---GGTC 113 (141)
Q Consensus 101 ~~tvP~VfI---~G~~ 113 (141)
...+|++++ ||+.
T Consensus 532 v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 532 VLGLPTILFFDAQGQE 547 (571)
T ss_pred CCCCCEEEEECCCCCC
Confidence 889998744 4654
No 169
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=96.66 E-value=0.0087 Score=46.99 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=45.5
Q ss_pred cCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 51 RSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 51 ~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
..+||||.++.-+|+..|++|+.+.++..... +.+. +.+-...+|++..+|..+....-+..
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~-------~~fl---~iNP~GkVPvL~~d~~~L~ES~aI~~ 131 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKP-------EWFL---KISPEGKVPVVKLDEKWVADSDVITQ 131 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCC-------HHHH---hhCCCCCCCEEEECCEEEecHHHHHH
Confidence 35599999999999999999998888753311 1233 24666799999999987765554444
No 170
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.63 E-value=0.0048 Score=42.59 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.2
Q ss_pred CEEEEEcCCChhHHHHHHHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFA 65 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~ 65 (141)
-++.|+.+|||.|++....|.
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEEECCCChHHHHHhHHHH
Confidence 344588999999998776664
No 171
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.014 Score=45.04 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=54.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCC-CCCCCCEEEECCeEeeccHHHHH
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPR-NPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~-g~~tvP~VfI~G~~iGG~del~~ 122 (141)
..|.+|+.-.|||-.|++-.|+..||+|+++++|-...... .++ .. -...||++.-||+.|+-.-.+.+
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~------ll~----~np~hkKVPvL~Hn~k~i~ESliive 77 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEW------LLE----KNPVHKKVPVLEHNGKPICESLIIVE 77 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHH------HHH----hccccccCCEEEECCceehhhHHHHH
Confidence 56999999999999999999999999999999986532111 232 33 57899999999998875544444
Q ss_pred H
Q 032422 123 L 123 (141)
Q Consensus 123 l 123 (141)
.
T Consensus 78 Y 78 (231)
T KOG0406|consen 78 Y 78 (231)
T ss_pred H
Confidence 3
No 172
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.53 E-value=0.0058 Score=38.88 Aligned_cols=22 Identities=14% Similarity=0.455 Sum_probs=19.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q 032422 46 VIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
|++|..+.||+|..+...|.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 5689999999999999888764
No 173
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=96.36 E-value=0.013 Score=43.40 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=49.4
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 48 IFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 48 vy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
+|+...||+|.+++-+|...|++|+.+.++....+... ...+. +.+...++|++..||..+.....+..
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~---~~~~~---~~nP~g~vP~L~~~g~~l~ES~aI~~ 70 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQR---SPEFL---ALNPQGLVPTLDIDGEVLTQSLAIIE 70 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccC---Chhhh---hcCCCCcCCEEEECCEEeecHHHHHH
Confidence 68888999999999999999999998888742211100 01232 35667899999999987766655544
No 174
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.31 E-value=0.0085 Score=50.72 Aligned_cols=56 Identities=14% Similarity=0.340 Sum_probs=35.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-------CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCe
Q 032422 46 VIIFSRSSCCMCHVMKTLFATI-------GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGT 112 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~-------gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~ 112 (141)
+|.|..+||++|+.+...|++. ++.+-.+|+|.++.. ... +..+..++|++ |-+|.
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~--------~~~---~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKE--------FAK---QELQLGSFPTILFFPKHS 439 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccH--------HHH---HHcCCCccceEEEEECCC
Confidence 4459999999999999888653 244555666644311 111 13567899986 45663
No 175
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=96.31 E-value=0.019 Score=42.38 Aligned_cols=33 Identities=9% Similarity=0.270 Sum_probs=22.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc---CCCceEEEec
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI---GVHPTVIELD 77 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~---gi~~~~idid 77 (141)
-|+.|+.+|||+|++....|.+. ++.+--++++
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~ 106 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYK 106 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 34459999999999887777554 4444444433
No 176
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=96.27 E-value=0.015 Score=42.45 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=17.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
-++.|+.+|||.|++....|++.
T Consensus 66 vll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHH
Confidence 34458899999999887777554
No 177
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0074 Score=45.03 Aligned_cols=63 Identities=13% Similarity=0.233 Sum_probs=47.1
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEE-ECCeEeeccHHHH
Q 032422 48 IFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVF-IGGTCVGGLESLV 121 (141)
Q Consensus 48 vy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~Vf-I~G~~iGG~del~ 121 (141)
+|....||||.+|+-++--.||+++..-++.+++.. + . +.-|...||.+. -+|++.+-.=|+.
T Consensus 3 LYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T-p------~----rmiG~KqVPiL~Kedg~~m~ESlDIV 66 (215)
T COG2999 3 LYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET-P------I----RMIGQKQVPILQKEDGRAMPESLDIV 66 (215)
T ss_pred eeEeccChHHHHHHHHhhccCCChhhheeccCcccC-h------h----hhhcccccceEEccccccchhhhHHH
Confidence 688899999999999999999999887777655321 1 1 146899999875 4677776554443
No 178
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.21 E-value=0.018 Score=47.40 Aligned_cols=67 Identities=18% Similarity=0.324 Sum_probs=39.7
Q ss_pred HHHHHhcCCC--EEEEEcCCChhHHHHHHHHHh-------cCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCE
Q 032422 36 RIQRLISEHP--VIIFSRSSCCMCHVMKTLFAT-------IGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPA 106 (141)
Q Consensus 36 ~l~~~~~~~~--Vvvy~~~~Cp~C~~ak~~L~~-------~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~ 106 (141)
.+.++++.++ ++.|+.+||++|++....+.+ .+..+....||..... .+. +..|..++|+
T Consensus 10 ~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~--------~l~---~~~~i~~~Pt 78 (462)
T TIGR01130 10 NFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK--------DLA---QKYGVSGYPT 78 (462)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH--------HHH---HhCCCccccE
Confidence 3455555554 455999999999988766643 2322444455433321 121 2467888998
Q ss_pred E--EECCeE
Q 032422 107 V--FIGGTC 113 (141)
Q Consensus 107 V--fI~G~~ 113 (141)
+ |-+|+.
T Consensus 79 ~~~~~~g~~ 87 (462)
T TIGR01130 79 LKIFRNGED 87 (462)
T ss_pred EEEEeCCcc
Confidence 7 446664
No 179
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=96.21 E-value=0.029 Score=38.37 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=19.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
.-|+.|+.+|||.|.+....|.+.
T Consensus 27 ~vvv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 27 PYLLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEEEcCcCHHHHHHHHHHHHH
Confidence 345668999999999888877654
No 180
>PLN02309 5'-adenylylsulfate reductase
Probab=96.14 E-value=0.035 Score=46.98 Aligned_cols=23 Identities=13% Similarity=0.496 Sum_probs=19.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
-+|.|..+||++|+.+...|++.
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~L 390 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEEL 390 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHH
Confidence 45569999999999998888654
No 181
>PTZ00102 disulphide isomerase; Provisional
Probab=96.04 E-value=0.022 Score=47.42 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=37.6
Q ss_pred HHHHHhcCC--CEEEEEcCCChhHHHHHHHHHh-------cCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCE
Q 032422 36 RIQRLISEH--PVIIFSRSSCCMCHVMKTLFAT-------IGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPA 106 (141)
Q Consensus 36 ~l~~~~~~~--~Vvvy~~~~Cp~C~~ak~~L~~-------~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~ 106 (141)
.+++.+..+ -++.|..+||++|++....+.+ .+.++....+|-.... .+. +..+..++|+
T Consensus 41 ~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~--------~l~---~~~~i~~~Pt 109 (477)
T PTZ00102 41 TFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM--------ELA---QEFGVRGYPT 109 (477)
T ss_pred hHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH--------HHH---HhcCCCcccE
Confidence 344444433 4556899999999988765543 2233444444433321 121 2467888998
Q ss_pred E--EECCe
Q 032422 107 V--FIGGT 112 (141)
Q Consensus 107 V--fI~G~ 112 (141)
+ |-+|.
T Consensus 110 ~~~~~~g~ 117 (477)
T PTZ00102 110 IKFFNKGN 117 (477)
T ss_pred EEEEECCc
Confidence 6 44554
No 182
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=95.99 E-value=0.017 Score=40.04 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.2
Q ss_pred CEEEEEcCCChhHHHHHHHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFA 65 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~ 65 (141)
-++.|+.+|||.|++....|.
T Consensus 20 vll~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 20 VGLYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEEEECCCCchHHHHHHHHH
Confidence 344588999999998776664
No 183
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.032 Score=46.12 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=60.0
Q ss_pred CCCcchhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHH---hcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCC
Q 032422 26 SIDGEESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFA---TIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPA 102 (141)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~---~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~ 102 (141)
.+...++..+.++.+-......-|..-.|..|-.+.+.|+ -++...+..-||. .. +|++.+ .-+..
T Consensus 100 ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdG----a~---Fq~Eve----ar~IM 168 (520)
T COG3634 100 PPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDG----AL---FQDEVE----ARNIM 168 (520)
T ss_pred CCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecc----hh---hHhHHH----hccce
Confidence 3344578888888888888888887777766666666665 4565566666653 22 344443 35788
Q ss_pred CCCEEEECCeEeec----cHHHHHHHhC
Q 032422 103 PAPAVFIGGTCVGG----LESLVALHIG 126 (141)
Q Consensus 103 tvP~VfI~G~~iGG----~del~~l~~~ 126 (141)
.||+||.||+.+|. .+++.+....
T Consensus 169 aVPtvflnGe~fg~GRmtleeilaki~~ 196 (520)
T COG3634 169 AVPTVFLNGEEFGQGRMTLEEILAKIDT 196 (520)
T ss_pred ecceEEEcchhhcccceeHHHHHHHhcC
Confidence 99999999998873 3455554444
No 184
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=95.98 E-value=0.0098 Score=38.02 Aligned_cols=50 Identities=14% Similarity=0.255 Sum_probs=33.5
Q ss_pred hhHHHHHHHHhcCCC-EE-EEEcCCChhHHHHHHHHHh-------cCCCceEEEecCCC
Q 032422 31 ESSEARIQRLISEHP-VI-IFSRSSCCMCHVMKTLFAT-------IGVHPTVIELDDHE 80 (141)
Q Consensus 31 ~~~~~~l~~~~~~~~-Vv-vy~~~~Cp~C~~ak~~L~~-------~gi~~~~idid~~~ 80 (141)
.+..+.+.++.+.++ |+ .|+.+||++|+...+.+-. ..-.|..+.+|...
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~ 62 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDD 62 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTT
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCC
Confidence 456666666665443 33 4889999999998776622 34557777777644
No 185
>PTZ00102 disulphide isomerase; Provisional
Probab=95.97 E-value=0.022 Score=47.45 Aligned_cols=23 Identities=9% Similarity=0.395 Sum_probs=18.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
-++.|..+||++|+.....|.+.
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~ 400 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNEL 400 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHH
Confidence 34458899999999999888754
No 186
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=95.92 E-value=0.11 Score=32.86 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=45.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhC--CCCCCCCCEEEECCeEeeccHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADS--PRNPAPAPAVFIGGTCVGGLESL 120 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~--~~g~~tvP~VfI~G~~iGG~del 120 (141)
.++|..+..+.|.+++-+|...|++|+.+.++..+. +.+... ......+|++.+||..+....-+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~----------~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI 68 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAED----------LEKLKKDGSLMFQQVPMVEIDGMKLVQTRAI 68 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHH----------HHhhccccCCCCCCCCEEEECCEEEeeHHHH
Confidence 468888888899999999999999999888864221 111000 11246899999898776554433
No 187
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=95.89 E-value=0.08 Score=33.78 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=42.4
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHH
Q 032422 52 SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALH 124 (141)
Q Consensus 52 ~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~ 124 (141)
+..+.|.++..+|+..|++|+.++....+ . .+....+|.+.+||+.|+...-+..+.
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~--~--------------~~P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAE--F--------------MSPSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCcc--c--------------cCCCCcccEEEECCEEEeCHHHHHHHH
Confidence 56788999999999999999988542111 0 122368999999999998887665543
No 188
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=95.72 E-value=0.025 Score=38.28 Aligned_cols=25 Identities=12% Similarity=0.360 Sum_probs=19.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc
Q 032422 43 EHPVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
..-++.|..+|||+|+.....|.+.
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQL 45 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHH
Confidence 4456668899999999887777654
No 189
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=95.71 E-value=0.033 Score=36.89 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=36.8
Q ss_pred EEEEcCC-ChhH------HHHHHHHHh--------cCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECC
Q 032422 47 IIFSRSS-CCMC------HVMKTLFAT--------IGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGG 111 (141)
Q Consensus 47 vvy~~~~-Cp~C------~~ak~~L~~--------~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G 111 (141)
+||+..- |+-| +...++|+. ....|+++||...++.... ++..+.+ ....--+|.|.|+|
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~---~~~a~~I--~ede~fYPlV~i~~ 75 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHD---QQFAERI--LEDELFYPLVVIND 75 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHH---HHHHHHH--HTTSS-SSEEEETT
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHH---HHHHHHH--HhcccccceEEECC
Confidence 4677653 6555 456666653 2345689999876654211 1222221 12346789999999
Q ss_pred eEee-ccHHHHHH
Q 032422 112 TCVG-GLESLVAL 123 (141)
Q Consensus 112 ~~iG-G~del~~l 123 (141)
+.|| |.-.|+..
T Consensus 76 eiV~EGnp~LK~I 88 (93)
T PF07315_consen 76 EIVAEGNPQLKDI 88 (93)
T ss_dssp EEEEESS--HHHH
T ss_pred EEEecCCccHHHH
Confidence 9998 55555443
No 190
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=95.64 E-value=0.023 Score=37.21 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC------CCceEEEecCCCCccCCcccHHHHHhhhCCCCCC--CCCEEEE
Q 032422 43 EHPVIIFSRSSCCMCHVMKTLFATIG------VHPTVIELDDHEISALPLVDHDESAHADSPRNPA--PAPAVFI 109 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~C~~ak~~L~~~g------i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~--tvP~VfI 109 (141)
..-+++|..+||+.|..++..|++.. +.+-.+|++..+ +..+ ..|.. ++|++.+
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~---------~~~~----~~~i~~~~~P~~~~ 74 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG---------RHLE----YFGLKEEDLPVIAI 74 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH---------HHHH----HcCCChhhCCEEEE
Confidence 34566688999999999999997642 334445554422 1222 34555 8998754
No 191
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=95.62 E-value=0.013 Score=38.11 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=18.8
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHh
Q 032422 42 SEHPVIIFSRSSCCMCHVMKTLFAT 66 (141)
Q Consensus 42 ~~~~Vvvy~~~~Cp~C~~ak~~L~~ 66 (141)
...-++.|..+|||+|.+....|.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~ 43 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEA 43 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHH
Confidence 4445667889999999977766654
No 192
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.12 Score=38.36 Aligned_cols=66 Identities=6% Similarity=0.076 Sum_probs=48.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCe-EeeccHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGT-CVGGLESL 120 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~-~iGG~del 120 (141)
++|+.+.+|+|.++.-.|...|++|+.+.++... ... ...+. ..+....||++..+|- .+-...-+
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~----~~~~~---~~nP~gkVPvL~~~~~~~l~ES~AI 68 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQK----PPDFL---ALNPLGKVPALVDDDGEVLTESGAI 68 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccC----CHHHH---hcCCCCCCCEEeeCCCCeeecHHHH
Confidence 5788888899999999999999999999998765 221 12232 2567889999998874 44444333
No 193
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=95.45 E-value=0.11 Score=41.07 Aligned_cols=66 Identities=8% Similarity=0.216 Sum_probs=50.0
Q ss_pred HHHhcCCCEEEEEcC---C----ChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEEC
Q 032422 38 QRLISEHPVIIFSRS---S----CCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIG 110 (141)
Q Consensus 38 ~~~~~~~~Vvvy~~~---~----Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~ 110 (141)
++-.+...|.+|--+ + .|||-++..+|...+|+|+.++-.... ++-..++|-|-+|
T Consensus 38 k~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~~-----------------rSr~G~lPFIELN 100 (281)
T KOG4244|consen 38 KTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLKR-----------------RSRNGTLPFIELN 100 (281)
T ss_pred hhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccccee-----------------eccCCCcceEEeC
Confidence 355556666676643 2 489999999999999999988655321 2445799999999
Q ss_pred CeEeeccHHH
Q 032422 111 GTCVGGLESL 120 (141)
Q Consensus 111 G~~iGG~del 120 (141)
|++|.+.+-+
T Consensus 101 Ge~iaDS~~I 110 (281)
T KOG4244|consen 101 GEHIADSDLI 110 (281)
T ss_pred CeeccccHHH
Confidence 9999998754
No 194
>PRK10357 putative glutathione S-transferase; Provisional
Probab=95.43 E-value=0.083 Score=38.90 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=46.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE-CCeEeeccHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI-GGTCVGGLESL 120 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI-~G~~iGG~del 120 (141)
.+|+.+.||++++++-+|+..|++|+.++++...... .+. +.+....+|++.. +|..+-...-+
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~-------~~~---~~nP~g~vP~L~~~~g~~l~eS~aI 66 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADN-------GVA---QYNPLGKVPALVTEEGECWFDSPII 66 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCch-------hhh---hcCCccCCCeEEeCCCCeeecHHHH
Confidence 5789999999999999999999999998877533111 222 2466789999985 56555444333
No 195
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.049 Score=38.05 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=33.7
Q ss_pred hhHHHHHHHHhcCCCEEEEE---------cCCChhHHHHHHHHHhc------CCCceEEEecCCCCc
Q 032422 31 ESSEARIQRLISEHPVIIFS---------RSSCCMCHVMKTLFATI------GVHPTVIELDDHEIS 82 (141)
Q Consensus 31 ~~~~~~l~~~~~~~~Vvvy~---------~~~Cp~C~~ak~~L~~~------gi~~~~idid~~~~~ 82 (141)
++..+.++..-+...|.+|. .||||+|.+|...+.+. ++.+-.+++...+..
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~W 79 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYW 79 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcc
Confidence 45555666665666666643 27999999998887542 344556677666643
No 196
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.032 Score=43.77 Aligned_cols=68 Identities=18% Similarity=0.353 Sum_probs=44.4
Q ss_pred HHHHHHHhcCC--CEEE-EEcCCChhHHHHHHHHHhcCCCc-----eEEEecCCCCccCCcccHHHHHhhhCCCCCCCCC
Q 032422 34 EARIQRLISEH--PVII-FSRSSCCMCHVMKTLFATIGVHP-----TVIELDDHEISALPLVDHDESAHADSPRNPAPAP 105 (141)
Q Consensus 34 ~~~l~~~~~~~--~Vvv-y~~~~Cp~C~~ak~~L~~~gi~~-----~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP 105 (141)
.++..++.... -|+| |+.+||..|+++-.++..+.-+| -.+|||+-...+ .-.|....|
T Consensus 10 ~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~ta-------------a~~gV~amP 76 (288)
T KOG0908|consen 10 SDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTA-------------ATNGVNAMP 76 (288)
T ss_pred HHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchh-------------hhcCcccCc
Confidence 34444444433 3444 99999999999999998875554 355555433211 135888899
Q ss_pred EE--EECCeEe
Q 032422 106 AV--FIGGTCV 114 (141)
Q Consensus 106 ~V--fI~G~~i 114 (141)
+. |.||..|
T Consensus 77 TFiff~ng~ki 87 (288)
T KOG0908|consen 77 TFIFFRNGVKI 87 (288)
T ss_pred eEEEEecCeEe
Confidence 74 8899765
No 197
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=95.29 E-value=0.039 Score=36.78 Aligned_cols=24 Identities=17% Similarity=0.557 Sum_probs=18.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
.-|+.|..+|||.|++....|.+.
T Consensus 23 ~vvl~F~~~wC~~C~~~~p~l~~~ 46 (114)
T cd02967 23 PTLLFFLSPTCPVCKKLLPVIRSI 46 (114)
T ss_pred eEEEEEECCCCcchHhHhHHHHHH
Confidence 345568899999999887777653
No 198
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.29 E-value=0.044 Score=40.67 Aligned_cols=31 Identities=16% Similarity=0.457 Sum_probs=20.5
Q ss_pred CEEEEEcCCChhHHHHHHHHH----hcCCCceEEE
Q 032422 45 PVIIFSRSSCCMCHVMKTLFA----TIGVHPTVIE 75 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~----~~gi~~~~id 75 (141)
-|+.|+.+|||.|++....+. +.++++..+.
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 345589999999998765553 3455544444
No 199
>PLN02395 glutathione S-transferase
Probab=95.25 E-value=0.25 Score=36.66 Aligned_cols=70 Identities=9% Similarity=0.030 Sum_probs=49.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l 123 (141)
+.+|+..+|+ +.+++-+|...|++|+.+.++....... .+.+. +.+-..+||++..+|..+.....+...
T Consensus 3 ~~ly~~~~~~-~~rv~~~L~e~gl~~e~~~v~~~~~~~~----~~~~~---~~nP~g~vP~L~~~~~~l~ES~aI~~Y 72 (215)
T PLN02395 3 LKVYGPAFAS-PKRALVTLIEKGVEFETVPVDLMKGEHK----QPEYL---ALQPFGVVPVIVDGDYKIFESRAIMRY 72 (215)
T ss_pred EEEEcCCcCc-HHHHHHHHHHcCCCceEEEeccccCCcC----CHHHH---hhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 6889877754 7999999999999999988876432111 11233 256678999999888777666555443
No 200
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.22 E-value=0.019 Score=44.73 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=22.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh---cC-CCceEE
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFAT---IG-VHPTVI 74 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~---~g-i~~~~i 74 (141)
..|+||+-+.||||+++.+-+.. .| +.+.++
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~i 153 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHI 153 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEE
Confidence 34889999999999998666543 23 555555
No 201
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.063 Score=45.76 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCEEE--EEcCCChhHH-------HHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCC
Q 032422 33 SEARIQRLISEHPVII--FSRSSCCMCH-------VMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAP 103 (141)
Q Consensus 33 ~~~~l~~~~~~~~Vvv--y~~~~Cp~C~-------~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~t 103 (141)
..+.+.+.+..+..++ |..|||.+|+ +|-+.|.+.+-+...-.||...... +. ...+.++
T Consensus 31 t~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~--------~~---~~y~v~g 99 (493)
T KOG0190|consen 31 TKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESD--------LA---SKYEVRG 99 (493)
T ss_pred ecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhh--------hH---hhhcCCC
Confidence 3566888888887763 8899999998 4556666666666666666544321 21 2477889
Q ss_pred CCEE--EECCeE
Q 032422 104 APAV--FIGGTC 113 (141)
Q Consensus 104 vP~V--fI~G~~ 113 (141)
+|++ |.||+.
T Consensus 100 yPTlkiFrnG~~ 111 (493)
T KOG0190|consen 100 YPTLKIFRNGRS 111 (493)
T ss_pred CCeEEEEecCCc
Confidence 9985 778874
No 202
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=94.93 E-value=0.15 Score=38.89 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=46.1
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHH
Q 032422 52 SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 52 ~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l 123 (141)
..||||++.-..|...+++|...-||....- +.+. ..++...+|.+-.||+.+-..+.+.+.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp-------~~f~---~~sp~~~~P~l~~d~~~~tDs~~Ie~~ 80 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKP-------EWFL---DISPGGKPPVLKFDEKWVTDSDKIEEF 80 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCc-------HHHH---hhCCCCCCCeEEeCCceeccHHHHHHH
Confidence 4599999999999999999876555543321 1333 267789999999999988777765544
No 203
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.80 E-value=0.071 Score=35.63 Aligned_cols=76 Identities=12% Similarity=0.234 Sum_probs=44.4
Q ss_pred cCCCEEEEEcCC-ChhH------HHHHHHHHhc------C--CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCE
Q 032422 42 SEHPVIIFSRSS-CCMC------HVMKTLFATI------G--VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPA 106 (141)
Q Consensus 42 ~~~~Vvvy~~~~-Cp~C------~~ak~~L~~~------g--i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~ 106 (141)
+..+++||+... |--| +...++|+.. + ..|+++||...+..... ++..+.+ ....-.+|.
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~---~~~aekI--~~dey~YPl 77 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHD---LQFAEKI--EQDEYFYPL 77 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHH---HHHHHHH--hcccccceE
Confidence 445788898764 5444 5666777532 3 34578888655533211 1111110 134567899
Q ss_pred EEECCeEee-ccHHHHH
Q 032422 107 VFIGGTCVG-GLESLVA 122 (141)
Q Consensus 107 VfI~G~~iG-G~del~~ 122 (141)
|.++|+.|+ |.-.++.
T Consensus 78 ivvedeiVaeGnprlKd 94 (106)
T COG4837 78 IVVEDEIVAEGNPRLKD 94 (106)
T ss_pred EEEcceEeecCCchHHH
Confidence 999999997 4444443
No 204
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.78 E-value=0.1 Score=44.92 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=17.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q 032422 46 VIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
++.|+.+|||.|++....|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 4449999999999988887653
No 205
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=94.64 E-value=0.21 Score=33.65 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=41.3
Q ss_pred hHHHHHHHHhcCCCE-EE-EEcCCChhHHHHHH-HHHhc------CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCC
Q 032422 32 SSEARIQRLISEHPV-II-FSRSSCCMCHVMKT-LFATI------GVHPTVIELDDHEISALPLVDHDESAHADSPRNPA 102 (141)
Q Consensus 32 ~~~~~l~~~~~~~~V-vv-y~~~~Cp~C~~ak~-~L~~~------gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~ 102 (141)
+..+.++++.+.++. +| +..+||++|+...+ .|... +-.|-.+.+|...... . .+. ...+..
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~-----~-~~~---~~~~~~ 75 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEG-----Q-RFL---QSYKVD 75 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccH-----H-HHH---HHhCcc
Confidence 455666666665543 33 66789999998754 55432 2245555554432111 1 222 246778
Q ss_pred CCCEE-EE---CCeEe
Q 032422 103 PAPAV-FI---GGTCV 114 (141)
Q Consensus 103 tvP~V-fI---~G~~i 114 (141)
.+|.+ |+ +|+.+
T Consensus 76 ~~P~~~~i~~~~g~~l 91 (114)
T cd02958 76 KYPHIAIIDPRTGEVL 91 (114)
T ss_pred CCCeEEEEeCccCcEe
Confidence 89986 55 45544
No 206
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=94.61 E-value=0.049 Score=43.99 Aligned_cols=76 Identities=14% Similarity=0.325 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhcCCC-EEEEEcCCChhHHHHHHHHHhcCCCceE----EEecCCCCccCCcccHHHHHhhhCCCCCCCCC
Q 032422 31 ESSEARIQRLISEHP-VIIFSRSSCCMCHVMKTLFATIGVHPTV----IELDDHEISALPLVDHDESAHADSPRNPAPAP 105 (141)
Q Consensus 31 ~~~~~~l~~~~~~~~-Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~----idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP 105 (141)
.++.+++++.-+..- .|=|..|||.+|++...++++.|.+... +.+.+.+....+ ... ...|.+.+|
T Consensus 31 eDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~-----aiA---nefgiqGYP 102 (468)
T KOG4277|consen 31 EDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFP-----AIA---NEFGIQGYP 102 (468)
T ss_pred hhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccch-----hhH---hhhccCCCc
Confidence 556666665555443 3448899999999999999988766542 333333322211 111 246789999
Q ss_pred EE-EECCeEe
Q 032422 106 AV-FIGGTCV 114 (141)
Q Consensus 106 ~V-fI~G~~i 114 (141)
+| |..|.+.
T Consensus 103 TIk~~kgd~a 112 (468)
T KOG4277|consen 103 TIKFFKGDHA 112 (468)
T ss_pred eEEEecCCee
Confidence 87 5555443
No 207
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.1 Score=39.15 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=43.7
Q ss_pred EEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 49 FSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 49 y~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
|+.|+|.+ +++-.|.-.|++|+++-|+-...+.. .-..++ +.....+||++.|||..+-..--+.+
T Consensus 11 YWrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q---~~~ef~---~iNPm~kVP~L~i~g~tl~eS~AII~ 76 (217)
T KOG0868|consen 11 YWRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQ---SDSEFK---EINPMEKVPTLVIDGLTLTESLAIIE 76 (217)
T ss_pred hhcccchH--HHHHHHHHcCCCcceeehhhhcchhh---hhhHHh---hcCchhhCCeEEECCEEeehHHHHHH
Confidence 55788876 77777777888888777765443211 112344 35678899999999987755433333
No 208
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=94.45 E-value=0.49 Score=35.26 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=40.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI 109 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI 109 (141)
+.+|..+ +|+|.++.-+|+..|++|+.++++....... .+.+. +.+....||++..
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~----~~~~~---~iNP~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQF----RPEFL---RISPNNKIPAIVD 57 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccC----CHHHH---hhCcCCCCCEEEe
Confidence 4678766 6999999999999999999988875432111 12233 2567789999987
No 209
>PRK11752 putative S-transferase; Provisional
Probab=94.44 E-value=0.25 Score=38.53 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=45.4
Q ss_pred HhcCCCEEEEEcCCChhHHHHHHHHHhc------CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEEC
Q 032422 40 LISEHPVIIFSRSSCCMCHVMKTLFATI------GVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIG 110 (141)
Q Consensus 40 ~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~------gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~ 110 (141)
....+++.+|+. .+|+|.++.-+|++. |++|+.+.|+-...... .+++. +..-..+||++..+
T Consensus 39 ~~~~~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~----~~e~~---~iNP~GkVP~Lv~~ 107 (264)
T PRK11752 39 PVGKHPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQF----SSGFV---EINPNSKIPALLDR 107 (264)
T ss_pred CCCCCCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCcccccc----CHHHH---hhCCCCCCCEEEeC
Confidence 556678999996 499999999999986 88899888765332111 11232 25667899999875
No 210
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.11 Score=38.18 Aligned_cols=33 Identities=12% Similarity=0.331 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCC--CEEEEEcCCChhHHHHHHHHH
Q 032422 33 SEARIQRLISEH--PVIIFSRSSCCMCHVMKTLFA 65 (141)
Q Consensus 33 ~~~~l~~~~~~~--~Vvvy~~~~Cp~C~~ak~~L~ 65 (141)
..+..+.+.... -++||..++|+||.+.|+-+.
T Consensus 31 ~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~ 65 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLK 65 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhc
Confidence 344555555443 466899999999998887664
No 211
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=94.37 E-value=0.16 Score=36.30 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=17.7
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHH
Q 032422 42 SEHPVIIFSRSSCCMCHVMKTLFA 65 (141)
Q Consensus 42 ~~~~Vvvy~~~~Cp~C~~ak~~L~ 65 (141)
+..-++.|+.+|||+|+.....|.
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~ 84 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMN 84 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHH
Confidence 344556788999999998766554
No 212
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.34 E-value=0.076 Score=36.85 Aligned_cols=34 Identities=12% Similarity=0.504 Sum_probs=28.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCceEEEec
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD 77 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid 77 (141)
..+++|++|.|+-|+-+.++|.++.-+|+.+-|+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN 36 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVN 36 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEE
Confidence 4578999999999999999999888788755443
No 213
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=94.11 E-value=0.042 Score=38.50 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEe--eccHHHHH
Q 032422 59 VMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCV--GGLESLVA 122 (141)
Q Consensus 59 ~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~i--GG~del~~ 122 (141)
.+.+.|++.|++...+++..+|.....+ +...++.+..|...+|.++|||+.+ |.|-...+
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n---~~V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eE 93 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVEN---PEVNQLLQTEGAEALPITLVDGEIVKTGRYPTNEE 93 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHS---HHHHHHHHHH-GGG-SEEEETTEEEEESS---HHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhC---HHHHHHHHHcCcccCCEEEECCEEEEecCCCCHHH
Confidence 4566778899999999999988653321 2233333346889999999999865 66654433
No 214
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=94.06 E-value=0.14 Score=42.13 Aligned_cols=22 Identities=14% Similarity=0.461 Sum_probs=17.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHh
Q 032422 45 PVIIFSRSSCCMCHVMKTLFAT 66 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~ 66 (141)
-++.|..+||++|+.....+.+
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~ 388 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEE 388 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHH
Confidence 3445899999999998888865
No 215
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=93.95 E-value=0.17 Score=36.92 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=28.1
Q ss_pred HHHhcCCCEEE-EEcCCChhHHHH----HHHHH---hcCCCceEEEecCCCCc
Q 032422 38 QRLISEHPVII-FSRSSCCMCHVM----KTLFA---TIGVHPTVIELDDHEIS 82 (141)
Q Consensus 38 ~~~~~~~~Vvv-y~~~~Cp~C~~a----k~~L~---~~gi~~~~idid~~~~~ 82 (141)
.+.+...-|.+ |+..|||.|+.. +++++ +.+-+++++=|+.+.+.
T Consensus 28 ~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~ 80 (157)
T KOG2501|consen 28 SEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDE 80 (157)
T ss_pred hHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCH
Confidence 34444433443 778999999954 44443 34567888888776543
No 216
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.16 Score=38.99 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=43.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCc--eEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEee
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATIGVHP--TVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVG 115 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~--~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iG 115 (141)
..|-||+-.+|--|-..-+.|++.|.-- +.++-...+.. +++ .+.-++|.||+||+.+-
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~--------~~~-----~~V~SvP~Vf~DGel~~ 71 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFL--------AFE-----KGVISVPSVFIDGELVY 71 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHH--------Hhh-----cceeecceEEEcCeEEE
Confidence 3588999999999999999999988753 44444333311 222 56789999999999874
No 217
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.75 E-value=0.14 Score=43.30 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=51.5
Q ss_pred cCCChhHHHHHHHHHhc--CC-CceEEEecCCCCccCCcccHHHHHhhhCCCCC--CCCCEEEE-------CCeEeeccH
Q 032422 51 RSSCCMCHVMKTLFATI--GV-HPTVIELDDHEISALPLVDHDESAHADSPRNP--APAPAVFI-------GGTCVGGLE 118 (141)
Q Consensus 51 ~~~Cp~C~~ak~~L~~~--gi-~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~--~tvP~VfI-------~G~~iGG~d 118 (141)
+.+|||-.+|.-+-+.+ +. +|.+..|-.+|+.. ++.++++.+..|| ..-|.|+= .|..+||+.
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w-----~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~ 75 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEW-----EDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCN 75 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHH-----HHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChH
Confidence 46899999987666643 44 48999999998653 2466666655664 57799865 578999999
Q ss_pred HHHHHHh
Q 032422 119 SLVALHI 125 (141)
Q Consensus 119 el~~l~~ 125 (141)
|+.++.+
T Consensus 76 ~f~e~~~ 82 (452)
T cd05295 76 EFLEYAE 82 (452)
T ss_pred HHHHHHH
Confidence 9988644
No 218
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=93.66 E-value=0.54 Score=29.69 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=41.7
Q ss_pred ChhHHHHHHHHHhcCCC---ceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE-CCeEeeccHHHHHH
Q 032422 54 CCMCHVMKTLFATIGVH---PTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI-GGTCVGGLESLVAL 123 (141)
Q Consensus 54 Cp~C~~ak~~L~~~gi~---~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI-~G~~iGG~del~~l 123 (141)
-|.|-.+..+|+-.+.+ ++.+.... + . .+....+|.+.. +|+.+.|+.++.+.
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~n-~--~--------------~Sptg~LP~L~~~~~~~vsg~~~Iv~y 70 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSNN-P--W--------------LSPTGELPALIDSGGTWVSGFRNIVEY 70 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcCC-C--C--------------cCCCCCCCEEEECCCcEEECHHHHHHh
Confidence 69999999999999998 55554432 1 1 244578999999 99999999998765
No 219
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=93.55 E-value=0.48 Score=32.78 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=40.6
Q ss_pred HHHHhcCCCE--EEEEc--CCCh---hHHHHHHHHHhc--CCCceEEEecCCCCccCCcccHHHHHhhhCCCCCC--CCC
Q 032422 37 IQRLISEHPV--IIFSR--SSCC---MCHVMKTLFATI--GVHPTVIELDDHEISALPLVDHDESAHADSPRNPA--PAP 105 (141)
Q Consensus 37 l~~~~~~~~V--vvy~~--~~Cp---~C~~ak~~L~~~--gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~--tvP 105 (141)
+.+.++.++. |.|.. |||. +|++...-+... .+.+-.+|++...+... ..+. +..|.. .+|
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~-----~~L~---~~y~I~~~gyP 82 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLN-----MELG---ERYKLDKESYP 82 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhh-----HHHH---HHhCCCcCCCC
Confidence 4556665544 44899 8898 888887666443 25555666654332111 1232 357777 999
Q ss_pred EE--EECCe
Q 032422 106 AV--FIGGT 112 (141)
Q Consensus 106 ~V--fI~G~ 112 (141)
++ |.+|.
T Consensus 83 Tl~lF~~g~ 91 (116)
T cd03007 83 VIYLFHGGD 91 (116)
T ss_pred EEEEEeCCC
Confidence 86 66773
No 220
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.39 E-value=0.13 Score=35.88 Aligned_cols=75 Identities=13% Similarity=0.218 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhcC-CCEEE-EE-------cCCChhHHHHHHHHHh----c--CCCceEEEecCCCCccCCcccHHHHHhh
Q 032422 31 ESSEARIQRLISE-HPVII-FS-------RSSCCMCHVMKTLFAT----I--GVHPTVIELDDHEISALPLVDHDESAHA 95 (141)
Q Consensus 31 ~~~~~~l~~~~~~-~~Vvv-y~-------~~~Cp~C~~ak~~L~~----~--gi~~~~idid~~~~~~~~~~l~~~l~~l 95 (141)
.+..+.+++.... .++.| |+ ++|||+|++|...+++ . +..+-++.+...+....++ ...+..
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~--n~fR~~- 82 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPN--NPFRTD- 82 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TT--SHHHH--
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCC--CCceEc-
Confidence 3445555554433 44444 33 3689999999877754 2 2234455664433211110 112221
Q ss_pred hCCCCCCCCCEEEE
Q 032422 96 DSPRNPAPAPAVFI 109 (141)
Q Consensus 96 ~~~~g~~tvP~VfI 109 (141)
.......+|++.-
T Consensus 83 -p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 83 -PDLKLKGIPTLIR 95 (119)
T ss_dssp --CC---SSSEEEE
T ss_pred -ceeeeeecceEEE
Confidence 1256789999864
No 221
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=93.21 E-value=0.11 Score=33.44 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=23.2
Q ss_pred EEEEEcCCChhHHHHHHHHHh----cC--CCceEEEecCCC
Q 032422 46 VIIFSRSSCCMCHVMKTLFAT----IG--VHPTVIELDDHE 80 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~----~g--i~~~~idid~~~ 80 (141)
++.|+.+||+.|++....|.+ ++ -.++.+-|..++
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~ 45 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE 45 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence 567999999999988877754 33 455655555443
No 222
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.09 E-value=0.059 Score=37.40 Aligned_cols=24 Identities=13% Similarity=0.400 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh
Q 032422 43 EHPVIIFSRSSCCMCHVMKTLFAT 66 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~C~~ak~~L~~ 66 (141)
...|++|+.++||||.+....+.+
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 346788999999999988777765
No 223
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=93.06 E-value=0.77 Score=32.97 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=52.2
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHh-hhCCCCCCCCCEEEECCeEeecc---
Q 032422 42 SEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAH-ADSPRNPAPAPAVFIGGTCVGGL--- 117 (141)
Q Consensus 42 ~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~-l~~~~g~~tvP~VfI~G~~iGG~--- 117 (141)
....+++|-.|+|.=|+.=.+.|+..|.+...++.+... .+++ |--.....+.=+..|||.+|=|.
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~----------alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa 93 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFL----------ALKRRLGIPYEMQSCHTAVINGYYVEGHVPA 93 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHH----------HHHHhcCCChhhccccEEEEcCEEEeccCCH
Confidence 456789999999999999999999999887777665322 2221 11112245667899999999886
Q ss_pred HHHHHHHhC
Q 032422 118 ESLVALHIG 126 (141)
Q Consensus 118 del~~l~~~ 126 (141)
+++..+.++
T Consensus 94 ~aI~~ll~~ 102 (149)
T COG3019 94 EAIARLLAE 102 (149)
T ss_pred HHHHHHHhC
Confidence 444454443
No 224
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=0.11 Score=44.37 Aligned_cols=28 Identities=11% Similarity=0.382 Sum_probs=22.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCc
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATIGVHP 71 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~ 71 (141)
+-.+-|.+|||++|++...++++++-.|
T Consensus 386 dVLvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 386 DVLVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred ceEEEEcCcccchhhhhhhHHHHHHHHh
Confidence 3455599999999999999998875544
No 225
>smart00594 UAS UAS domain.
Probab=92.93 E-value=0.83 Score=31.32 Aligned_cols=70 Identities=13% Similarity=0.033 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhcCC--CEEEEEcCCChhHHHHHH-HHHhc------CCCceEEEecCCCCccCCcccHHHHHhhhCCCCC
Q 032422 31 ESSEARIQRLISEH--PVIIFSRSSCCMCHVMKT-LFATI------GVHPTVIELDDHEISALPLVDHDESAHADSPRNP 101 (141)
Q Consensus 31 ~~~~~~l~~~~~~~--~Vvvy~~~~Cp~C~~ak~-~L~~~------gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~ 101 (141)
.+..+.++++.+.. .++.+..+||++|....+ +|... +-.|-.+-+|...... .++.+..+.
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg---------~~l~~~~~~ 84 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG---------QRVSQFYKL 84 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH---------HHHHHhcCc
Confidence 45666677776653 344466789999997643 44322 2234444444322111 112235677
Q ss_pred CCCCEEEE
Q 032422 102 APAPAVFI 109 (141)
Q Consensus 102 ~tvP~VfI 109 (141)
.++|.+.+
T Consensus 85 ~~~P~~~~ 92 (122)
T smart00594 85 DSFPYVAI 92 (122)
T ss_pred CCCCEEEE
Confidence 89998744
No 226
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=92.59 E-value=0.1 Score=38.31 Aligned_cols=78 Identities=21% Similarity=0.389 Sum_probs=34.0
Q ss_pred HHHHHHHhcCC-CEEE-EEcCCChhHHHHHH-HHHh------cCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCC
Q 032422 34 EARIQRLISEH-PVII-FSRSSCCMCHVMKT-LFAT------IGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPA 104 (141)
Q Consensus 34 ~~~l~~~~~~~-~Vvv-y~~~~Cp~C~~ak~-~L~~------~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tv 104 (141)
.+.++++-+.+ +|.| ++.+||.+|+.+.+ .+.. ++-.|--|.+|.++........+.+.+. .+|..+.
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~---~~~~gGw 103 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQA---MSGSGGW 103 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHH---HHS---S
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHH---hcCCCCC
Confidence 34455555444 4444 66899999996653 4432 2334666666654432221111222222 2466788
Q ss_pred CE-EEE--CCeEe
Q 032422 105 PA-VFI--GGTCV 114 (141)
Q Consensus 105 P~-VfI--~G~~i 114 (141)
|. ||+ +|+.+
T Consensus 104 Pl~vfltPdg~p~ 116 (163)
T PF03190_consen 104 PLTVFLTPDGKPF 116 (163)
T ss_dssp SEEEEE-TTS-EE
T ss_pred CceEEECCCCCee
Confidence 85 455 55544
No 227
>PTZ00057 glutathione s-transferase; Provisional
Probab=92.57 E-value=1.1 Score=33.28 Aligned_cols=71 Identities=11% Similarity=0.179 Sum_probs=48.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhh--CCCCCCCCCEEEECCeEeeccHHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHAD--SPRNPAPAPAVFIGGTCVGGLESLV 121 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~--~~~g~~tvP~VfI~G~~iGG~del~ 121 (141)
++++|..+..+.|.+++-+|+..|++|+.+.++.... .. + .+++.. ..+-...+|.+.+||..+....-+.
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~-~~---~--~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~ 76 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGD-AF---I--EFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIV 76 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccch-HH---H--HHHhccccCCCCCCCCCEEEECCEEEecHHHHH
Confidence 4778888888889999999999999999887643211 10 0 112211 1356789999999997776554433
No 228
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=92.19 E-value=0.62 Score=36.72 Aligned_cols=82 Identities=17% Similarity=0.332 Sum_probs=47.9
Q ss_pred EEE-EEcCCChhHHHHHHHHHhcC---CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEeeccHH
Q 032422 46 VII-FSRSSCCMCHVMKTLFATIG---VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCVGGLES 119 (141)
Q Consensus 46 Vvv-y~~~~Cp~C~~ak~~L~~~g---i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~iGG~de 119 (141)
||| +..+++|-|..+-..|..+- .....+.|........ .......+|+| |.+|..+|.+-.
T Consensus 149 VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~------------~~f~~~~LPtllvYk~G~l~~~~V~ 216 (265)
T PF02114_consen 149 VVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPAS------------ENFPDKNLPTLLVYKNGDLIGNFVG 216 (265)
T ss_dssp EEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTT------------TTS-TTC-SEEEEEETTEEEEEECT
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcc------------cCCcccCCCEEEEEECCEEEEeEEe
Confidence 554 77899999999988887542 2234444433221111 13446789986 669988776533
Q ss_pred HHHH----HhCCCcHHHHHhcCCc
Q 032422 120 LVAL----HIGGHLVPKLVEIGAL 139 (141)
Q Consensus 120 l~~l----~~~g~L~~~L~~~g~~ 139 (141)
+.++ +....|...|.+.|+|
T Consensus 217 l~~~~g~df~~~dlE~~L~~~G~l 240 (265)
T PF02114_consen 217 LTDLLGDDFFTEDLEAFLIEYGVL 240 (265)
T ss_dssp GGGCT-TT--HHHHHHHHHTTTSS
T ss_pred hHHhcCCCCCHHHHHHHHHHcCCC
Confidence 3222 2223588899999886
No 229
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=91.77 E-value=0.18 Score=34.47 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=17.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFAT 66 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~ 66 (141)
.-|+.|..+|||+|.+....|++
T Consensus 25 ~vvl~F~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 25 VVLLDFWTYCCINCLHTLPYLTD 47 (126)
T ss_pred EEEEEEECCCCccHHHHHHHHHH
Confidence 34556889999999987666654
No 230
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=91.65 E-value=0.14 Score=35.62 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=22.7
Q ss_pred CCEEEEEcC-CChhHHHHHHHHHh-------cCCCceEEEecCC
Q 032422 44 HPVIIFSRS-SCCMCHVMKTLFAT-------IGVHPTVIELDDH 79 (141)
Q Consensus 44 ~~Vvvy~~~-~Cp~C~~ak~~L~~-------~gi~~~~idid~~ 79 (141)
..|+.|+.+ |||.|......|.+ .++.+-.+..+.+
T Consensus 30 ~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~ 73 (146)
T PF08534_consen 30 PVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD 73 (146)
T ss_dssp EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS
T ss_pred eEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC
Confidence 346668888 99999977655543 2455555554443
No 231
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=91.57 E-value=0.17 Score=38.34 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=34.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCC--Cc--eEEEecCCCC-c-----cCC--cccHHHHHhhhCCCCCCCCCEEEECCe-
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGV--HP--TVIELDDHEI-S-----ALP--LVDHDESAHADSPRNPAPAPAVFIGGT- 112 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi--~~--~~idid~~~~-~-----~~~--~~l~~~l~~l~~~~g~~tvP~VfI~G~- 112 (141)
|.+|+..+|.-|--|-++|.++.- +. -.+.||--+. + +.+ -.-|..+.... ..+.-..||++|||.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~-~~~~vYTPQ~vVnG~~ 80 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRF-GLRSVYTPQVVVNGRE 80 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHT-T-S---SSEEEETTTE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHh-CCCCCcCCeEEECCee
Confidence 678999999999999999976521 22 1233333211 1 000 01122333211 123345699999994
Q ss_pred EeeccH
Q 032422 113 CVGGLE 118 (141)
Q Consensus 113 ~iGG~d 118 (141)
+.+|++
T Consensus 81 ~~~g~~ 86 (202)
T PF06764_consen 81 HRVGSD 86 (202)
T ss_dssp EEETT-
T ss_pred eeeccC
Confidence 667776
No 232
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=91.36 E-value=2.3 Score=26.47 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=43.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCC-CCCCEEEEC-CeEeeccHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNP-APAPAVFIG-GTCVGGLESL 120 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~-~tvP~VfI~-G~~iGG~del 120 (141)
+.+|.-++ .|..++-+|+..|++|+.+.++....... .+.+.+ .... ..+|.+..+ |..+-....+
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~----~~e~~~---~~p~~g~vP~l~~~~~~~l~es~AI 70 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHK----SPEFLA---INPMFGKVPALEDGDGFVLTESNAI 70 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGG----SHHHHH---HTTTSSSSSEEEETTTEEEESHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEeccccccc----chhhhh---cccccceeeEEEECCCCEEEcHHHH
Confidence 45666666 88899999999999999888875332111 023332 2334 789999999 8877655443
No 233
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.36 E-value=0.31 Score=41.97 Aligned_cols=66 Identities=8% Similarity=0.184 Sum_probs=40.3
Q ss_pred hhHHHHHHHHh----cCCCEEEEEcCCChhHHHHHHHHHhc-----CCCceEEEecCCCCccCCcccHHHHHhhhCCCCC
Q 032422 31 ESSEARIQRLI----SEHPVIIFSRSSCCMCHVMKTLFATI-----GVHPTVIELDDHEISALPLVDHDESAHADSPRNP 101 (141)
Q Consensus 31 ~~~~~~l~~~~----~~~~Vvvy~~~~Cp~C~~ak~~L~~~-----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~ 101 (141)
++.++.+++.+ +.-.+++|+.+.|++|.+++++|++. .+.++.+|...+.. .. +.+|.
T Consensus 351 ~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~---------~~----~~~~v 417 (555)
T TIGR03143 351 DSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPE---------SE----TLPKI 417 (555)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchh---------hH----hhcCC
Confidence 44444444444 33356668888999999999999874 23444444433221 11 24666
Q ss_pred CCCCEEEE
Q 032422 102 APAPAVFI 109 (141)
Q Consensus 102 ~tvP~VfI 109 (141)
..+|.+.|
T Consensus 418 ~~~P~~~i 425 (555)
T TIGR03143 418 TKLPTVAL 425 (555)
T ss_pred CcCCEEEE
Confidence 77899876
No 234
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=91.27 E-value=0.19 Score=31.85 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=18.4
Q ss_pred CCCEEE-EEcCCChhHHHHHHHHHhc
Q 032422 43 EHPVII-FSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 43 ~~~Vvv-y~~~~Cp~C~~ak~~L~~~ 67 (141)
...+++ |..+|||+|+.+...|.+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHH
Confidence 334444 3699999999998888754
No 235
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=90.37 E-value=0.74 Score=42.87 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=17.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q 032422 46 VIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
|+-|+.+|||.|+.....|+++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHH
Confidence 4449999999999887777643
No 236
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=90.09 E-value=0.67 Score=40.28 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=50.0
Q ss_pred HHHHHhcCC---CEEE-EEcCCChhHHHHHHHHHh--------cCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCC
Q 032422 36 RIQRLISEH---PVII-FSRSSCCMCHVMKTLFAT--------IGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAP 103 (141)
Q Consensus 36 ~l~~~~~~~---~Vvv-y~~~~Cp~C~~ak~~L~~--------~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~t 103 (141)
+++++..++ +|++ |+.+||--|+..+++.-. .++-.-..|+..++.. ..+.++ +.|.-+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~-----~~~lLk----~~~~~G 534 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPA-----ITALLK----RLGVFG 534 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHH-----HHHHHH----HcCCCC
Confidence 556555544 4555 999999999988877642 1233334455443321 233444 578899
Q ss_pred CCEE-EEC--CeEeeccHHHHHHHhCCCcHHHHHhc
Q 032422 104 APAV-FIG--GTCVGGLESLVALHIGGHLVPKLVEI 136 (141)
Q Consensus 104 vP~V-fI~--G~~iGG~del~~l~~~g~L~~~L~~~ 136 (141)
+|.+ |.+ |+-.-. +-...+.+.+.++|+++
T Consensus 535 ~P~~~ff~~~g~e~~~---l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEI---LTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcC---CcceecHHHHHHHHHHh
Confidence 9976 554 322211 22333445566666654
No 237
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=89.48 E-value=0.34 Score=34.66 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh
Q 032422 43 EHPVIIFSRSSCCMCHVMKTLFAT 66 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~C~~ak~~L~~ 66 (141)
...|+.|+...||||.++...+..
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 456888999999999988777753
No 238
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=89.32 E-value=3.9 Score=25.87 Aligned_cols=70 Identities=6% Similarity=-0.079 Sum_probs=41.1
Q ss_pred EEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhC-CCCCCCCCEEEECCeEeeccHHH
Q 032422 49 FSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADS-PRNPAPAPAVFIGGTCVGGLESL 120 (141)
Q Consensus 49 y~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~-~~g~~tvP~VfI~G~~iGG~del 120 (141)
|.-..-+.|.+++-+|...|++|+.+.++..+..... -.+.+....+ ..-..++|++..||..+.-..-+
T Consensus 4 ~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~--~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AI 74 (82)
T cd03075 4 GYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYD--RSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAI 74 (82)
T ss_pred EEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccc--hHhhhccchhcCCcCCCCCEEEECCEEEeehHHH
Confidence 3334446788999999999999998888754311100 0011111000 11456999999888766544433
No 239
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=89.30 E-value=0.37 Score=34.11 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=14.5
Q ss_pred EEEEEcCCChhHHHHHHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLF 64 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L 64 (141)
|++|..+|||+|.+...-|
T Consensus 26 vv~~~as~C~~c~~~~~~l 44 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRAL 44 (153)
T ss_pred EEEEeCCCCCchhhhHHHH
Confidence 5679999999998755444
No 240
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=89.06 E-value=1.8 Score=32.87 Aligned_cols=96 Identities=19% Similarity=0.247 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCCEEE-EEcCCChhH---HHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE-
Q 032422 33 SEARIQRLISEHPVII-FSRSSCCMC---HVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV- 107 (141)
Q Consensus 33 ~~~~l~~~~~~~~Vvv-y~~~~Cp~C---~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V- 107 (141)
-.++++...++.+||+ |..+.---| .+=.+.|...-+.-..+.|+..... .+. ...+...+|.|
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~P--------Flv---~kL~IkVLP~v~ 142 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAP--------FLV---TKLNIKVLPTVA 142 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCc--------eee---eeeeeeEeeeEE
Confidence 4566777778888887 777774445 4555666666666555555543211 121 24678899986
Q ss_pred -EECCe---EeeccHHHHH--HHhCCCcHHHHHhcCCc
Q 032422 108 -FIGGT---CVGGLESLVA--LHIGGHLVPKLVEIGAL 139 (141)
Q Consensus 108 -fI~G~---~iGG~del~~--l~~~g~L~~~L~~~g~~ 139 (141)
|.||+ +|-||++|-. -+....|...|.+.|++
T Consensus 143 l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~vi 180 (211)
T KOG1672|consen 143 LFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSGVI 180 (211)
T ss_pred EEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhccce
Confidence 78986 4567766522 12223467777777754
No 241
>PRK10542 glutathionine S-transferase; Provisional
Probab=88.10 E-value=2.4 Score=30.90 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=42.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE-CCeEeeccHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI-GGTCVGGLESLVA 122 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI-~G~~iGG~del~~ 122 (141)
.+|+.++ +.+.++.-+|+..|++|+.+.++....... ..+.+. +.+....+|++.+ ||..|-....+..
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~---~~~~~~---~~nP~g~vPvL~~~~g~~l~eS~aI~~ 71 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLE---NGDDYL---AINPKGQVPALLLDDGTLLTEGVAIMQ 71 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeeccccccc---CChHHH---HhCcCCCCCeEEeCCCcEeecHHHHHH
Confidence 3555442 346778889999999999887775321100 001232 2566789999987 6666655544443
No 242
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=87.93 E-value=0.45 Score=31.84 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=17.6
Q ss_pred HHHhcCCCEEEEEcC-CChhHHHHHHHHHh
Q 032422 38 QRLISEHPVIIFSRS-SCCMCHVMKTLFAT 66 (141)
Q Consensus 38 ~~~~~~~~Vvvy~~~-~Cp~C~~ak~~L~~ 66 (141)
.++.+..-|+.|..+ |||+|.....-|.+
T Consensus 21 ~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~ 50 (124)
T PF00578_consen 21 SDLKGKPVVLFFWPTAWCPFCQAELPELNE 50 (124)
T ss_dssp GGGTTSEEEEEEESTTTSHHHHHHHHHHHH
T ss_pred HHHCCCcEEEEEeCccCccccccchhHHHH
Confidence 334333445556666 99999866655543
No 243
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=87.92 E-value=0.59 Score=34.93 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=30.7
Q ss_pred HHHhcCCCEEEEEcCCChhHHHHHHHHHh---cCCCc------eEEEecCC
Q 032422 38 QRLISEHPVIIFSRSSCCMCHVMKTLFAT---IGVHP------TVIELDDH 79 (141)
Q Consensus 38 ~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~---~gi~~------~~idid~~ 79 (141)
.++.....++-|+.+||+.|+.-..+|++ .|+++ ..+++|..
T Consensus 55 ~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 55 AELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred HHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 34445556777999999999988777764 57777 67777653
No 244
>PTZ00056 glutathione peroxidase; Provisional
Probab=87.39 E-value=0.6 Score=35.00 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=16.2
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHH
Q 032422 42 SEHPVIIFSRSSCCMCHVMKTLFA 65 (141)
Q Consensus 42 ~~~~Vvvy~~~~Cp~C~~ak~~L~ 65 (141)
...-++.|+.+|||+|.+-...|.
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~ 62 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMN 62 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHH
Confidence 333344589999999986554444
No 245
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=87.28 E-value=0.72 Score=32.31 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=16.0
Q ss_pred CCEEEEEcCCChhHHHHHHHH
Q 032422 44 HPVIIFSRSSCCMCHVMKTLF 64 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L 64 (141)
..|++|....||+|.+.-..+
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHH
T ss_pred eEEEEEECCCCHhHHHHHHHH
Confidence 357789999999999876555
No 246
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.18 E-value=0.7 Score=37.89 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=36.2
Q ss_pred hcCCCEEEEEcCCChhHHHHHHHHHhcC----CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEE
Q 032422 41 ISEHPVIIFSRSSCCMCHVMKTLFATIG----VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFI 109 (141)
Q Consensus 41 ~~~~~Vvvy~~~~Cp~C~~ak~~L~~~g----i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI 109 (141)
-+..-++.|..+||.+|++....+.+.. -......||.... +.+.+..+...+|++.+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~-----------~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH-----------KDLCEKYGIQGFPTLKV 107 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh-----------HHHHHhcCCccCcEEEE
Confidence 3456788899999999998877776431 1223334443221 11223578899998744
No 247
>PTZ00256 glutathione peroxidase; Provisional
Probab=86.92 E-value=0.63 Score=34.19 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=14.0
Q ss_pred EEEEcCCChhHHHHHHHHH
Q 032422 47 IIFSRSSCCMCHVMKTLFA 65 (141)
Q Consensus 47 vvy~~~~Cp~C~~ak~~L~ 65 (141)
+++..+|||+|.+-...|.
T Consensus 46 v~n~atwCp~C~~e~p~l~ 64 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLV 64 (183)
T ss_pred EEEECCCCCchHHHHHHHH
Confidence 3578999999997554444
No 248
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=86.42 E-value=0.69 Score=32.74 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=15.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHh
Q 032422 45 PVIIFSRSSCCMCHVMKTLFAT 66 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~ 66 (141)
-|+.|..+||| |.+....|.+
T Consensus 25 vvl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 25 LLIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEEcCCCC-chHHHHHHHH
Confidence 34458899999 9876666654
No 249
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.39 E-value=6.7 Score=29.83 Aligned_cols=69 Identities=10% Similarity=0.047 Sum_probs=50.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESL 120 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del 120 (141)
+.++|+...-|.|+++.-.++..|++|+.+.++....... ..++- ......+||++.-||-.+-....+
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~----~pefl---~~nP~~kVP~l~d~~~~l~eS~AI 70 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQK----SPEFL---KLNPLGKVPALEDGGLTLWESHAI 70 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccC----CHHHH---hcCcCCCCCeEecCCeEEeeHHHH
Confidence 4679999999999999999999999999887765442221 12332 256778999998887766555443
No 250
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=86.31 E-value=1.4 Score=30.26 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=17.4
Q ss_pred HHhcCCC-EEEEE-cCCChhHHHHHHHHHh
Q 032422 39 RLISEHP-VIIFS-RSSCCMCHVMKTLFAT 66 (141)
Q Consensus 39 ~~~~~~~-Vvvy~-~~~Cp~C~~ak~~L~~ 66 (141)
+.....+ |++|. .+|||.|.+-...|.+
T Consensus 19 ~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~ 48 (149)
T cd02970 19 ALLGEGPVVVVFYRGFGCPFCREYLRALSK 48 (149)
T ss_pred HHhcCCCEEEEEECCCCChhHHHHHHHHHH
Confidence 3443334 44554 7899999986666544
No 251
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=86.23 E-value=2.1 Score=29.13 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=13.4
Q ss_pred CEEEEE-cCCChhHHHHHHHHH
Q 032422 45 PVIIFS-RSSCCMCHVMKTLFA 65 (141)
Q Consensus 45 ~Vvvy~-~~~Cp~C~~ak~~L~ 65 (141)
.+++|. ..|||.|.....-|.
T Consensus 25 ~ll~f~~~~~c~~C~~~~~~l~ 46 (140)
T cd02971 25 VVLFFYPKDFTPVCTTELCAFR 46 (140)
T ss_pred EEEEEeCCCCCCcCHHHHHHHH
Confidence 344445 579999987655544
No 252
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=85.99 E-value=1.7 Score=29.07 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=42.1
Q ss_pred EEEcCCChhHHHHHHHHHhcCC--CceEEEecCCCCccCCcccHHHHHhhhCCC--CCCCCCEEEECCe-EeeccHHHHH
Q 032422 48 IFSRSSCCMCHVMKTLFATIGV--HPTVIELDDHEISALPLVDHDESAHADSPR--NPAPAPAVFIGGT-CVGGLESLVA 122 (141)
Q Consensus 48 vy~~~~Cp~C~~ak~~L~~~gi--~~~~idid~~~~~~~~~~l~~~l~~l~~~~--g~~tvP~VfI~G~-~iGG~del~~ 122 (141)
||.-..||+|....+++.+... .++.+++...+..+ .++.. ..+ ...+.-.+.-+|+ ...|.+-+..
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~l~~~~~g~~~~~G~~A~~~ 72 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQA-------LLASY-GISPEDADSRLHLIDDGERVYRGSDAVLR 72 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhh-------HHHhc-CcCHHHHcCeeEEecCCCEEEEcHHHHHH
Confidence 4566899999999999998864 46777774333211 11100 011 1233344433776 8888887666
Q ss_pred HHhC
Q 032422 123 LHIG 126 (141)
Q Consensus 123 l~~~ 126 (141)
+...
T Consensus 73 l~~~ 76 (114)
T PF04134_consen 73 LLRR 76 (114)
T ss_pred HHHH
Confidence 5443
No 253
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=85.70 E-value=0.86 Score=31.91 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=18.1
Q ss_pred CCCCCCCCEEEECCeEeeccHHHH
Q 032422 98 PRNPAPAPAVFIGGTCVGGLESLV 121 (141)
Q Consensus 98 ~~g~~tvP~VfI~G~~iGG~del~ 121 (141)
..|..++|++||||+.+.|..++.
T Consensus 131 ~~~i~~tPt~~inG~~~~~~~~~~ 154 (162)
T PF13462_consen 131 QLGITGTPTFFINGKYVVGPYTIE 154 (162)
T ss_dssp HHT-SSSSEEEETTCEEETTTSHH
T ss_pred HcCCccccEEEECCEEeCCCCCHH
Confidence 357889999999999998654443
No 254
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.11 E-value=7.5 Score=29.54 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=49.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESL 120 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del 120 (141)
...++.-+....|.-++.+|.-.|++|+...+...+. +.+++..+....+|.+-|||.-|...-.+
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~----------w~~~K~~~pfgqlP~l~vDg~~i~QS~AI 68 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA----------WEELKDKMPFGQLPVLEVDGKKLVQSRAI 68 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc----------hhhhcccCCCCCCCEEeECCEeeccHHHH
Confidence 4456666788899999999999999999998876542 22222345678899999999887655443
No 255
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=84.51 E-value=2.2 Score=29.46 Aligned_cols=28 Identities=18% Similarity=0.174 Sum_probs=17.0
Q ss_pred HHHhcCCCEEEEEcCC-ChhHHHHHHHHH
Q 032422 38 QRLISEHPVIIFSRSS-CCMCHVMKTLFA 65 (141)
Q Consensus 38 ~~~~~~~~Vvvy~~~~-Cp~C~~ak~~L~ 65 (141)
.+.....-|+.|..+| ||+|.+....|.
T Consensus 22 ~~~~gk~vvl~f~~~~~c~~C~~e~~~l~ 50 (143)
T cd03014 22 ADFAGKVKVISVFPSIDTPVCATQTKRFN 50 (143)
T ss_pred HHhCCCeEEEEEEcCCCCCcCHHHHHHHH
Confidence 3333433444466667 799997766664
No 256
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=83.89 E-value=1.2 Score=34.53 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=18.2
Q ss_pred HHHhcCCCEEEEEcCCChhHHHHHHHHH
Q 032422 38 QRLISEHPVIIFSRSSCCMCHVMKTLFA 65 (141)
Q Consensus 38 ~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~ 65 (141)
.+.-...-|+.|+.+|||.|......|.
T Consensus 95 sd~kGK~vvl~FwAswCp~c~~e~p~L~ 122 (236)
T PLN02399 95 SKFKGKVLLIVNVASKCGLTSSNYSELS 122 (236)
T ss_pred HHhCCCeEEEEEEcCCCcchHHHHHHHH
Confidence 3333444456699999999986554443
No 257
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=83.70 E-value=4 Score=36.27 Aligned_cols=78 Identities=22% Similarity=0.404 Sum_probs=42.4
Q ss_pred HHHHHHHhcC-CCEEE-EEcCCChhHHHH-HHHHHh------cCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCC
Q 032422 34 EARIQRLISE-HPVII-FSRSSCCMCHVM-KTLFAT------IGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPA 104 (141)
Q Consensus 34 ~~~l~~~~~~-~~Vvv-y~~~~Cp~C~~a-k~~L~~------~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tv 104 (141)
++.+.++-.. .||.+ .+.++|.+|+-+ .+-++. +|-.|.-|.||..+--...+...++.+ -.+|+.+.
T Consensus 33 ~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q---~~tG~GGW 109 (667)
T COG1331 33 EEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQ---AITGQGGW 109 (667)
T ss_pred HHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHH---HhccCCCC
Confidence 4455555544 45554 567899999733 444432 344577777776543222211222332 25788888
Q ss_pred CE-EEE--CCeEe
Q 032422 105 PA-VFI--GGTCV 114 (141)
Q Consensus 105 P~-VfI--~G~~i 114 (141)
|. ||+ +|+++
T Consensus 110 PLtVfLTPd~kPF 122 (667)
T COG1331 110 PLTVFLTPDGKPF 122 (667)
T ss_pred ceeEEECCCCcee
Confidence 84 555 55543
No 258
>PLN02412 probable glutathione peroxidase
Probab=83.56 E-value=1.2 Score=32.19 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=13.8
Q ss_pred CEEEEEcCCChhHHHHHHHH
Q 032422 45 PVIIFSRSSCCMCHVMKTLF 64 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L 64 (141)
-|+.|+.+|||.|.+...-|
T Consensus 32 vlv~f~a~~C~~c~~e~~~l 51 (167)
T PLN02412 32 LLIVNVASKCGLTDSNYKEL 51 (167)
T ss_pred EEEEEeCCCCCChHHHHHHH
Confidence 34458899999999643333
No 259
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=83.42 E-value=1.5 Score=30.43 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=13.6
Q ss_pred EEEEE-cCCChhHHHHHHHHH
Q 032422 46 VIIFS-RSSCCMCHVMKTLFA 65 (141)
Q Consensus 46 Vvvy~-~~~Cp~C~~ak~~L~ 65 (141)
|++|. .+|||.|.+....|.
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~ 52 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALR 52 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHH
Confidence 44454 789999986655554
No 260
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=83.42 E-value=1.2 Score=30.54 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=16.3
Q ss_pred CCCEEEEEcCCChh-HHHHHHHHH
Q 032422 43 EHPVIIFSRSSCCM-CHVMKTLFA 65 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~-C~~ak~~L~ 65 (141)
..-|++|+.+|||+ |.+....|.
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~ 46 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLA 46 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHH
Confidence 34566688999997 986655554
No 261
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=82.12 E-value=1.3 Score=30.42 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCCCCCCCEEEECCeEeeccHHHHHH
Q 032422 98 PRNPAPAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 98 ~~g~~tvP~VfI~G~~iGG~del~~l 123 (141)
..|..++|+++|||+.+-|.++...+
T Consensus 124 ~~gi~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 124 ALGITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred HcCCCcCCeEEECCEEecCCCCHHHH
Confidence 46888999999999999998765443
No 262
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=81.66 E-value=1.8 Score=35.18 Aligned_cols=31 Identities=16% Similarity=0.518 Sum_probs=25.1
Q ss_pred HHHHhcCCCEEE--EEcCCChhHHHHHHHHHhc
Q 032422 37 IQRLISEHPVII--FSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 37 l~~~~~~~~Vvv--y~~~~Cp~C~~ak~~L~~~ 67 (141)
+..++..+.+++ |..+||||++..+.++.+.
T Consensus 6 ~~~il~s~elvfv~FyAdWCrFSq~L~piF~EA 38 (375)
T KOG0912|consen 6 IDSILDSNELVFVNFYADWCRFSQMLKPIFEEA 38 (375)
T ss_pred HHHhhccceEEeeeeehhhchHHHHHhHHHHHH
Confidence 456777777765 8899999999999999754
No 263
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=80.30 E-value=8.4 Score=26.20 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCCEEEEEcCC-ChhHHHHHHHHHhc------CCCceEEEecCCCCccCCcccHHHHHhhhCCCCC-CCC
Q 032422 33 SEARIQRLISEHPVIIFSRSS-CCMCHVMKTLFATI------GVHPTVIELDDHEISALPLVDHDESAHADSPRNP-APA 104 (141)
Q Consensus 33 ~~~~l~~~~~~~~Vvvy~~~~-Cp~C~~ak~~L~~~------gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~-~tv 104 (141)
-.+.+.+.....++++|=-|. ||-...|.+-|++. .+++.++||-.+-. +-++.++ .+|. -.-
T Consensus 9 ql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~------vSn~IAe---~~~V~HeS 79 (105)
T PF11009_consen 9 QLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRP------VSNAIAE---DFGVKHES 79 (105)
T ss_dssp HHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHH------HHHHHHH---HHT----S
T ss_pred HHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCch------hHHHHHH---HhCCCcCC
Confidence 334444445577888888776 99999998888642 27788888865321 1123332 3443 345
Q ss_pred CEEEE--CCeEe
Q 032422 105 PAVFI--GGTCV 114 (141)
Q Consensus 105 P~VfI--~G~~i 114 (141)
||+++ ||+.+
T Consensus 80 PQ~ili~~g~~v 91 (105)
T PF11009_consen 80 PQVILIKNGKVV 91 (105)
T ss_dssp SEEEEEETTEEE
T ss_pred CcEEEEECCEEE
Confidence 99754 88876
No 264
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=80.03 E-value=2.5 Score=28.83 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=12.0
Q ss_pred EEEEE-cCCChhHHHHHHHH
Q 032422 46 VIIFS-RSSCCMCHVMKTLF 64 (141)
Q Consensus 46 Vvvy~-~~~Cp~C~~ak~~L 64 (141)
++.|. ..|||.|.....-|
T Consensus 27 ll~f~~~~~cp~C~~~~~~l 46 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDF 46 (140)
T ss_pred EEEEeCCCCCCchHHHHHHH
Confidence 44455 57899998654444
No 265
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=79.69 E-value=3.4 Score=30.41 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=20.0
Q ss_pred CCCEEEEE--cCCChhHHHHHHHHH-------hcCCCceEEEec
Q 032422 43 EHPVIIFS--RSSCCMCHVMKTLFA-------TIGVHPTVIELD 77 (141)
Q Consensus 43 ~~~Vvvy~--~~~Cp~C~~ak~~L~-------~~gi~~~~idid 77 (141)
...++||. .+|||.|..-...|. +.|+.+--+.+|
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D 74 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD 74 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 33455544 799999987544442 345554444444
No 266
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=79.64 E-value=2.3 Score=30.52 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=15.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHH
Q 032422 43 EHPVIIFSRSSCCMCHVMKTLFA 65 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~C~~ak~~L~ 65 (141)
...|+.|..+|||.|.+...-|.
T Consensus 26 k~~ll~f~~t~Cp~c~~~~~~l~ 48 (171)
T cd02969 26 KALVVMFICNHCPYVKAIEDRLN 48 (171)
T ss_pred CEEEEEEECCCCccHHHHHHHHH
Confidence 33455688999999986554444
No 267
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=79.30 E-value=3.1 Score=32.46 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVH 70 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~ 70 (141)
|.+|+..+|.-|-.+-+.|.+..-+
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~ 69 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADD 69 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccC
Confidence 4579999999999999999876443
No 268
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=74.28 E-value=3.2 Score=29.88 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=22.5
Q ss_pred CEEEEEcCCChhHHHHHHHHH----hc-CCCceEEEe
Q 032422 45 PVIIFSRSSCCMCHVMKTLFA----TI-GVHPTVIEL 76 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~----~~-gi~~~~idi 76 (141)
+|++|....||||--+...|. +. +++++..-+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 478999999999987766664 34 565554444
No 269
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=74.14 E-value=4.3 Score=26.89 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=23.8
Q ss_pred hHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc
Q 032422 32 SSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 32 ~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
..++.+.++-+.-.+++|+.++ ++|..++++|++.
T Consensus 9 qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~ 43 (94)
T cd02974 9 QLKAYLERLENPVELVASLDDS-EKSAELLELLEEI 43 (94)
T ss_pred HHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHH
Confidence 3344444444445555677767 9999999999865
No 270
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=73.94 E-value=39 Score=26.10 Aligned_cols=102 Identities=19% Similarity=0.282 Sum_probs=59.7
Q ss_pred CCCCCC-CcchhHHHHHHHHhcCC-CEEEEE------cCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHH
Q 032422 22 TTNLSI-DGEESSEARIQRLISEH-PVIIFS------RSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESA 93 (141)
Q Consensus 22 ~~~~~~-~~~~~~~~~l~~~~~~~-~Vvvy~------~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~ 93 (141)
+|..++ +......+++..-+... +=+.|. ..+-+|-.++++.|.++|.....+++...+... ++..+
T Consensus 8 ~~~~~~~~~~~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~----Ie~~l- 82 (224)
T COG3340 8 SSTFSFEDVLEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAA----IENKL- 82 (224)
T ss_pred CCCcccchhhhhhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHH----HHHhh-
Confidence 333444 23455567777766553 333443 245789999999999999999999998776432 12222
Q ss_pred hhhCCCCCCCCCEEEECCeEeecc-HHHHHHHhCCCcHHHHHh---cCCcc
Q 032422 94 HADSPRNPAPAPAVFIGGTCVGGL-ESLVALHIGGHLVPKLVE---IGALW 140 (141)
Q Consensus 94 ~l~~~~g~~tvP~VfI~G~~iGG~-del~~l~~~g~L~~~L~~---~g~~~ 140 (141)
...=.|+|+| |.. +=++.+.+.|. ...+++ +|++|
T Consensus 83 --------~~~d~IyVgG---GNTF~LL~~lke~gl-d~iIr~~vk~G~~Y 121 (224)
T COG3340 83 --------MKADIIYVGG---GNTFNLLQELKETGL-DDIIRERVKAGTPY 121 (224)
T ss_pred --------hhccEEEECC---chHHHHHHHHHHhCc-HHHHHHHHHcCCce
Confidence 2234678877 322 33455555554 444443 45544
No 271
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=73.85 E-value=3.3 Score=29.83 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=15.3
Q ss_pred CCEEE-EE-cCCChhHHHHHHHHHh
Q 032422 44 HPVII-FS-RSSCCMCHVMKTLFAT 66 (141)
Q Consensus 44 ~~Vvv-y~-~~~Cp~C~~ak~~L~~ 66 (141)
..++| |. .+|||.|......|.+
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHHH
Confidence 34554 44 6899999976666643
No 272
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=73.84 E-value=12 Score=26.06 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=35.7
Q ss_pred chhHHHHHHHHhc-CCCEEEEEcCCChhHH------------HHHHHHHhcCCCceEEEecC
Q 032422 30 EESSEARIQRLIS-EHPVIIFSRSSCCMCH------------VMKTLFATIGVHPTVIELDD 78 (141)
Q Consensus 30 ~~~~~~~l~~~~~-~~~Vvvy~~~~Cp~C~------------~ak~~L~~~gi~~~~idid~ 78 (141)
..++.+.++++.+ .+.|++.|.-....+. ...++|++++++|..+-+.+
T Consensus 26 ~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 26 ILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 3677777877744 4566666655555555 78999999999998887765
No 273
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.89 E-value=4.1 Score=33.37 Aligned_cols=27 Identities=11% Similarity=0.282 Sum_probs=20.8
Q ss_pred hcCCCEEEEEcCCChhHHHHHHHHHhc
Q 032422 41 ISEHPVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 41 ~~~~~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
.+...++.|..|||++|++....+++.
T Consensus 161 ~~~~~lv~f~aPwc~~ck~l~~~~~~~ 187 (383)
T KOG0191|consen 161 SDADWLVEFYAPWCGHCKKLAPEWEKL 187 (383)
T ss_pred cCcceEEEEeccccHHhhhcChHHHHH
Confidence 344568889999999999887666553
No 274
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=72.11 E-value=4.5 Score=29.12 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCCCCCCCEEEECCeEeeccHHHHHH
Q 032422 98 PRNPAPAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 98 ~~g~~tvP~VfI~G~~iGG~del~~l 123 (141)
..|..++|+++|||+.+-|.+.+..+
T Consensus 162 ~~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 162 ARGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HcCCCcCCeEEECCeeecccccHHHH
Confidence 35899999999999999888876543
No 275
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=71.76 E-value=18 Score=28.06 Aligned_cols=94 Identities=16% Similarity=0.289 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCCEEE-EEcCCChhHHHHHHHHHhcCCCce---EEEecCCCCccCCcccHHHHHhhhCCCCCCCCCE--E
Q 032422 34 EARIQRLISEHPVII-FSRSSCCMCHVMKTLFATIGVHPT---VIELDDHEISALPLVDHDESAHADSPRNPAPAPA--V 107 (141)
Q Consensus 34 ~~~l~~~~~~~~Vvv-y~~~~Cp~C~~ak~~L~~~gi~~~---~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~--V 107 (141)
.+.|+.-.+..-++| ...++-+-|......|.-+..+|. ...+.....++. +. .....+|+ |
T Consensus 150 ld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas-----~~-------F~~n~lP~Lli 217 (273)
T KOG3171|consen 150 LDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGAS-----DR-------FSLNVLPTLLI 217 (273)
T ss_pred HHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccch-----hh-------hcccCCceEEE
Confidence 333444444444444 445777888777777766555553 334443333322 11 22356775 5
Q ss_pred EECCeEeeccHHH----HHHHhCCCcHHHHHhcCCc
Q 032422 108 FIGGTCVGGLESL----VALHIGGHLVPKLVEIGAL 139 (141)
Q Consensus 108 fI~G~~iGG~del----~~l~~~g~L~~~L~~~g~~ 139 (141)
|-||+.||.|-.+ -+-+-.|.|..-|+.-|++
T Consensus 218 YkgGeLIgNFv~va~qlgedffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 218 YKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLL 253 (273)
T ss_pred eeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCC
Confidence 7799999999544 3344567888888888875
No 276
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=71.30 E-value=11 Score=28.56 Aligned_cols=38 Identities=8% Similarity=0.190 Sum_probs=30.6
Q ss_pred hcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecC
Q 032422 41 ISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDD 78 (141)
Q Consensus 41 ~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~ 78 (141)
-....+.+|.+..||.|......|..-+-++..+-|+.
T Consensus 107 ~~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs 144 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGS 144 (200)
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecC
Confidence 34678999999999999988777776777777777774
No 277
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=69.85 E-value=24 Score=24.97 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=36.5
Q ss_pred CEEEEEcC---CChhHHHHHHHHHhc----C---CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCe
Q 032422 45 PVIIFSRS---SCCMCHVMKTLFATI----G---VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGT 112 (141)
Q Consensus 45 ~Vvvy~~~---~Cp~C~~ak~~L~~~----g---i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~ 112 (141)
..++|..+ .+|.+..+--+|.+. + +.+-.+|+|..+ .+. ...|..++|++ |-||+
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~----------~LA---~~fgV~siPTLl~FkdGk 102 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE----------AIG---DRFGVFRFPATLVFTGGN 102 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH----------HHH---HHcCCccCCEEEEEECCE
Confidence 34455543 378888777666543 2 334455555433 232 25889999985 66998
Q ss_pred Eeecc
Q 032422 113 CVGGL 117 (141)
Q Consensus 113 ~iGG~ 117 (141)
.+|-.
T Consensus 103 ~v~~i 107 (132)
T PRK11509 103 YRGVL 107 (132)
T ss_pred EEEEE
Confidence 87643
No 278
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=69.74 E-value=4.3 Score=30.14 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=15.4
Q ss_pred HHHhcCCCEEEEEcCCChhHHH
Q 032422 38 QRLISEHPVIIFSRSSCCMCHV 59 (141)
Q Consensus 38 ~~~~~~~~Vvvy~~~~Cp~C~~ 59 (141)
.+.....-+++++.+||++|..
T Consensus 21 s~~~GKvvLVvf~AS~C~~~~q 42 (183)
T PRK10606 21 EKYAGNVLLIVNVASKCGLTPQ 42 (183)
T ss_pred HHhCCCEEEEEEEeCCCCCcHH
Confidence 3434445566799999999974
No 279
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=68.30 E-value=9.9 Score=26.54 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=11.7
Q ss_pred cCCCEEE-EEc-CCChhHHHHHH
Q 032422 42 SEHPVII-FSR-SSCCMCHVMKT 62 (141)
Q Consensus 42 ~~~~Vvv-y~~-~~Cp~C~~ak~ 62 (141)
+...++| |+. .|||.|.....
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~ 51 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQAC 51 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHH
Confidence 3344554 443 47899975433
No 280
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=68.26 E-value=22 Score=23.99 Aligned_cols=43 Identities=23% Similarity=0.471 Sum_probs=31.2
Q ss_pred hHHHHHHHHhcCCCEEEEEcCCChhHHHH-HHHHHhcCCCceEEEecCC
Q 032422 32 SSEARIQRLISEHPVIIFSRSSCCMCHVM-KTLFATIGVHPTVIELDDH 79 (141)
Q Consensus 32 ~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~a-k~~L~~~gi~~~~idid~~ 79 (141)
.+.+.+.++...-+ +| -|-.|..| +++|.+.||+.+.+.+...
T Consensus 4 ~~~Q~I~~I~~~f~--~~---qC~~cA~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 4 EVRQQIGKIASRFK--IF---QCVECASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred HHHHHHHHhhcccC--ce---ehHHHHHHHHHHHHHCCCCceEEEEEec
Confidence 34555566665544 22 49999765 7999999999999999874
No 281
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=67.71 E-value=5.4 Score=28.69 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=20.8
Q ss_pred CCCCCCCCEEEECCe-EeeccHHHHHH
Q 032422 98 PRNPAPAPAVFIGGT-CVGGLESLVAL 123 (141)
Q Consensus 98 ~~g~~tvP~VfI~G~-~iGG~del~~l 123 (141)
..|..++|+++|||+ .+-|.+.+..+
T Consensus 162 ~~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 162 QLGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HTTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred HcCCcccCEEEECCEEEEECCCCHHHH
Confidence 368899999999999 78888765443
No 282
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=67.39 E-value=5.4 Score=28.71 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=22.4
Q ss_pred HHHhcCCCEEEEEcCC-ChhHHHHHHHHHhcC---CCceEEEecC
Q 032422 38 QRLISEHPVIIFSRSS-CCMCHVMKTLFATIG---VHPTVIELDD 78 (141)
Q Consensus 38 ~~~~~~~~Vvvy~~~~-Cp~C~~ak~~L~~~g---i~~~~idid~ 78 (141)
.+.....-|+.|..+| ||.|.+-..-|.+.- -.+..+-|..
T Consensus 40 ~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~ 84 (167)
T PRK00522 40 ADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISA 84 (167)
T ss_pred HHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 3433333455577778 999987655554321 1345555543
No 283
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=67.28 E-value=45 Score=25.76 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=49.4
Q ss_pred hhHHHHHHHHhcCCCEEEEEc-C-----CChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCC
Q 032422 31 ESSEARIQRLISEHPVIIFSR-S-----SCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPA 104 (141)
Q Consensus 31 ~~~~~~l~~~~~~~~Vvvy~~-~-----~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tv 104 (141)
+.....+.+.+...+-++|.- . +=.|..+.++.|.+.|.+...++...+. .+.+. ..
T Consensus 18 ~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~--------~~~l~---------~a 80 (233)
T PRK05282 18 EHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADP--------VAAIE---------NA 80 (233)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhh--------HHHHh---------cC
Confidence 555677777776555555552 2 2357899999999999876655543211 11222 22
Q ss_pred CEEEECCeEeeccHHHHHHHhCCCcHHHHHh
Q 032422 105 PAVFIGGTCVGGLESLVALHIGGHLVPKLVE 135 (141)
Q Consensus 105 P~VfI~G~~iGG~del~~l~~~g~L~~~L~~ 135 (141)
=.|||+| |..-.+.+....-.|.+.|++
T Consensus 81 d~I~v~G---Gnt~~l~~~l~~~gl~~~l~~ 108 (233)
T PRK05282 81 EAIFVGG---GNTFQLLKQLYERGLLAPIRE 108 (233)
T ss_pred CEEEECC---ccHHHHHHHHHHCCcHHHHHH
Confidence 3788877 333444444444556665553
No 284
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=67.22 E-value=9.5 Score=28.42 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=22.9
Q ss_pred HHhcCCCEEE--EEcCCChhHHHHHHHH-------HhcCCCceEEEecC
Q 032422 39 RLISEHPVII--FSRSSCCMCHVMKTLF-------ATIGVHPTVIELDD 78 (141)
Q Consensus 39 ~~~~~~~Vvv--y~~~~Cp~C~~ak~~L-------~~~gi~~~~idid~ 78 (141)
+..+...+++ |..+|||.|..-..-| .+.|+.+--+.+|.
T Consensus 21 d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 21 DYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred HHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3333234544 6678999998654444 33466555555553
No 285
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=66.89 E-value=41 Score=26.18 Aligned_cols=100 Identities=12% Similarity=0.190 Sum_probs=58.2
Q ss_pred cCCCcceeeecCCCCCCCCCCCCcchhHHHHHHHHhc---CCCEEEEEcCCC-hhHHHHH----HHHHhcCC-CceEEEe
Q 032422 6 RYPNDVVHLDLTPPSSTTNLSIDGEESSEARIQRLIS---EHPVIIFSRSSC-CMCHVMK----TLFATIGV-HPTVIEL 76 (141)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~Vvvy~~~~C-p~C~~ak----~~L~~~gi-~~~~idi 76 (141)
.|++|+-++-+.+|.-.+. +..+...+.++..+- ...++||.--+- .+...+. -+|++.|. +.....+
T Consensus 99 ~~~~dF~~lkig~PlLy~k---~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~v 175 (265)
T COG4822 99 KYSNDFKRLKIGRPLLYYK---NDYEICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAV 175 (265)
T ss_pred HHhhhhheeecCCceeech---hhHHHHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 5899999999999965554 222333444555544 456777765442 2233333 44566776 3455566
Q ss_pred cCCCCccCCcccHHHHHhhhC--CCCCCCCCEEEECCeEe
Q 032422 77 DDHEISALPLVDHDESAHADS--PRNPAPAPAVFIGGTCV 114 (141)
Q Consensus 77 d~~~~~~~~~~l~~~l~~l~~--~~g~~tvP~VfI~G~~i 114 (141)
...|.- ...++.|++ ..+..-.|..++.|+|.
T Consensus 176 e~yP~~------d~vi~~l~~~~~~~v~L~PlMlvAG~Ha 209 (265)
T COG4822 176 EGYPLV------DTVIEYLRKNGIKEVHLIPLMLVAGDHA 209 (265)
T ss_pred cCCCcH------HHHHHHHHHcCCceEEEeeeEEeechhh
Confidence 666632 223443332 23456679999999874
No 286
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=66.72 E-value=3.8 Score=30.59 Aligned_cols=20 Identities=25% Similarity=0.379 Sum_probs=16.6
Q ss_pred CCCEEEEEcCCChhHHHHHH
Q 032422 43 EHPVIIFSRSSCCMCHVMKT 62 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~C~~ak~ 62 (141)
...|+.|..-+||+|.+...
T Consensus 38 ~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCeEEEEeCCCCccHHHhcc
Confidence 45688899999999998654
No 287
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=65.19 E-value=11 Score=27.27 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=26.3
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHhcCCC
Q 032422 42 SEHPVIIFSRSSCCMCHVMKTLFATIGVH 70 (141)
Q Consensus 42 ~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~ 70 (141)
+..+||+|..++|+.+..+...|...|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 56899999999999999999999999865
No 288
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=64.20 E-value=4.9 Score=27.08 Aligned_cols=16 Identities=25% Similarity=0.494 Sum_probs=14.2
Q ss_pred CEEEEEcCCChhHHHH
Q 032422 45 PVIIFSRSSCCMCHVM 60 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~a 60 (141)
+|.||..+-||+|++.
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 5889999999999873
No 289
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=63.52 E-value=27 Score=24.83 Aligned_cols=69 Identities=16% Similarity=0.289 Sum_probs=41.4
Q ss_pred HHHHHHHHhcC--CCEEE--EEcCCChhHHHHHHHHHhcCC---Cc---eEEEecCCCCccCCcccHHHHHhhhCCCCCC
Q 032422 33 SEARIQRLISE--HPVII--FSRSSCCMCHVMKTLFATIGV---HP---TVIELDDHEISALPLVDHDESAHADSPRNPA 102 (141)
Q Consensus 33 ~~~~l~~~~~~--~~Vvv--y~~~~Cp~C~~ak~~L~~~gi---~~---~~idid~~~~~~~~~~l~~~l~~l~~~~g~~ 102 (141)
...++.+++.+ .+++| |+.+|-|-|-+.-++|.+.-. .| ..+|+++-+ .+.+ ..+-.
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~----------~~~~---~~~l~ 76 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVP----------DFVK---MYELY 76 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhh----------hhhh---hhccc
Confidence 34455555543 34444 999999999999999986421 23 345666433 2332 23444
Q ss_pred CCCE--EEECCeEe
Q 032422 103 PAPA--VFIGGTCV 114 (141)
Q Consensus 103 tvP~--VfI~G~~i 114 (141)
..|+ .|.+++|+
T Consensus 77 ~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 77 DPPTVMFFFNNKHM 90 (142)
T ss_pred CCceEEEEEcCceE
Confidence 4554 47888776
No 290
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=63.03 E-value=5.2 Score=28.87 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=17.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHh
Q 032422 45 PVIIFSRSSCCMCHVMKTLFAT 66 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~ 66 (141)
+|.+|.-+.||||-.+.+.|.+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~ 23 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEK 23 (193)
T ss_pred eEEEEECCCCchhhCchHHHHH
Confidence 4789999999999877666653
No 291
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.78 E-value=4.9 Score=31.06 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=17.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
.|.||+-.-||||---++.|++.
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHH
Confidence 56778888899998666666543
No 292
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=60.46 E-value=24 Score=24.59 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=11.3
Q ss_pred CCCCEEEECCeEe
Q 032422 102 APAPAVFIGGTCV 114 (141)
Q Consensus 102 ~tvP~VfI~G~~i 114 (141)
-..|.|.|||+.+
T Consensus 60 ~~S~~I~inG~pi 72 (120)
T PF10865_consen 60 LESPTIRINGRPI 72 (120)
T ss_pred cCCCeeeECCEeh
Confidence 5679999999977
No 293
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=60.38 E-value=6.1 Score=27.22 Aligned_cols=47 Identities=11% Similarity=0.264 Sum_probs=29.0
Q ss_pred ChhHHHHHHHHHhc-----CCCceEEEecCCCCccCCcccHHHHHhhhCCCC--CCCCCEEEECCe
Q 032422 54 CCMCHVMKTLFATI-----GVHPTVIELDDHEISALPLVDHDESAHADSPRN--PAPAPAVFIGGT 112 (141)
Q Consensus 54 Cp~C~~ak~~L~~~-----gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g--~~tvP~VfI~G~ 112 (141)
||+|..+.-+|... .++.++++... + ++.+.+..| ..+.|++..++.
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R-P-----------R~~vi~llGE~~QslPvLVL~~~ 77 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPR-P-----------RQAVIALLGEANQSLPVLVLADG 77 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCC-c-----------hHHHHHHhChhccCCCEEEeCCC
Confidence 99999999999864 34444444432 1 111222333 578999888663
No 294
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=59.74 E-value=9.5 Score=28.45 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=16.3
Q ss_pred CCCCCCCCEEEECCeEeecc
Q 032422 98 PRNPAPAPAVFIGGTCVGGL 117 (141)
Q Consensus 98 ~~g~~tvP~VfI~G~~iGG~ 117 (141)
..|..++|+++|||+++=+.
T Consensus 162 ~~gI~gtPtfiInGky~v~~ 181 (207)
T PRK10954 162 DLQLRGVPAMFVNGKYMVNN 181 (207)
T ss_pred HcCCCCCCEEEECCEEEEcc
Confidence 46889999999999986443
No 295
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=59.01 E-value=11 Score=28.45 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=18.3
Q ss_pred CCCCCCCCEEEECCeEeeccHHH
Q 032422 98 PRNPAPAPAVFIGGTCVGGLESL 120 (141)
Q Consensus 98 ~~g~~tvP~VfI~G~~iGG~del 120 (141)
..|....|++||+|+.++|.-++
T Consensus 210 ~~gv~gTPt~~v~~~~~~g~~~~ 232 (244)
T COG1651 210 QLGVNGTPTFIVNGKLVPGLPDL 232 (244)
T ss_pred hcCCCcCCeEEECCeeecCCCCH
Confidence 35678899999999988887653
No 296
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=57.38 E-value=18 Score=26.79 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=12.1
Q ss_pred CEEEE-E-cCCChhHHHHHHHH
Q 032422 45 PVIIF-S-RSSCCMCHVMKTLF 64 (141)
Q Consensus 45 ~Vvvy-~-~~~Cp~C~~ak~~L 64 (141)
.+++| . ..|||.|..-..-|
T Consensus 33 ~vvL~F~P~~~~p~C~~el~~l 54 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTELGDV 54 (187)
T ss_pred eEEEEEECCCCCCcCHHHHHHH
Confidence 44443 4 68899998644333
No 297
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=55.54 E-value=21 Score=28.05 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=24.0
Q ss_pred HHHHhcCCCEEEE--EcCCChhHHHHHHHH-------HhcCCCceEEEecC
Q 032422 37 IQRLISEHPVIIF--SRSSCCMCHVMKTLF-------ATIGVHPTVIELDD 78 (141)
Q Consensus 37 l~~~~~~~~Vvvy--~~~~Cp~C~~ak~~L-------~~~gi~~~~idid~ 78 (141)
+.+..+...+++| -..|||.|..-...| .+.|++.--+.+|.
T Consensus 92 Lsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 92 SSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred HHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3444455566665 358999998743333 33455544445444
No 298
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=55.27 E-value=12 Score=31.93 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc
Q 032422 33 SEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 33 ~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
+.+.++++.+.-.+++|.. .|++|.+++++|++.
T Consensus 10 l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (517)
T PRK15317 10 LKQYLELLERPIELVASLD-DSEKSAELKELLEEI 43 (517)
T ss_pred HHHHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHH
Confidence 3344444444445555665 899999999999875
No 299
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=53.78 E-value=3.3 Score=32.25 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc-------CCCceEEEecCCC
Q 032422 34 EARIQRLISEHPVIIFSRSSCCMCHVMKTLFATI-------GVHPTVIELDDHE 80 (141)
Q Consensus 34 ~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~-------gi~~~~idid~~~ 80 (141)
++-...+++..=.+.|..+|||-|...+..|++. ++..-++|+...+
T Consensus 31 eenw~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np 84 (248)
T KOG0913|consen 31 EENWKELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP 84 (248)
T ss_pred ccchhhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc
Confidence 3445666777778889999999999999999863 5556678887665
No 300
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=53.21 E-value=11 Score=23.14 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=11.5
Q ss_pred EEECCeEeeccHHH
Q 032422 107 VFIGGTCVGGLESL 120 (141)
Q Consensus 107 VfI~G~~iGG~del 120 (141)
||+||..+|=.++-
T Consensus 1 VFlNG~~iG~~~~p 14 (63)
T PF04566_consen 1 VFLNGVWIGIHSDP 14 (63)
T ss_dssp EEETTEEEEEESSH
T ss_pred CEECCEEEEEEcCH
Confidence 79999999977553
No 301
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=52.46 E-value=15 Score=25.98 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.5
Q ss_pred CCCCCCCCEEEECCeEeec
Q 032422 98 PRNPAPAPAVFIGGTCVGG 116 (141)
Q Consensus 98 ~~g~~tvP~VfI~G~~iGG 116 (141)
..|..++|+++|||+.+-+
T Consensus 138 ~~gi~gTPt~iInG~~~~~ 156 (178)
T cd03019 138 KYKITGVPAFVVNGKYVVN 156 (178)
T ss_pred HcCCCCCCeEEECCEEEEC
Confidence 3688999999999987543
No 302
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=52.20 E-value=14 Score=27.98 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=12.4
Q ss_pred EEEEEcCCChhHHHHHHHHHh
Q 032422 46 VIIFSRSSCCMCHVMKTLFAT 66 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~ 66 (141)
+.+|..+.||||+++-+.+..
T Consensus 122 ~~~f~~~~~~~~~~a~~~~~~ 142 (244)
T COG1651 122 EFPFLDPACPYCRRAAQAARC 142 (244)
T ss_pred EeecCCCCcHHHHHHHHHHHH
Confidence 344556667766666655544
No 303
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=50.60 E-value=16 Score=31.22 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=23.1
Q ss_pred hHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc
Q 032422 32 SSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 32 ~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
.+++.+.++.+.-.+++|.. .|++|.+++++|++.
T Consensus 9 ~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (515)
T TIGR03140 9 QLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEI 43 (515)
T ss_pred HHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHH
Confidence 33444444444444555665 799999999999875
No 304
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=50.17 E-value=11 Score=29.56 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=16.1
Q ss_pred HhcCCCEEE--EEcCCChhHHHHHHHH
Q 032422 40 LISEHPVII--FSRSSCCMCHVMKTLF 64 (141)
Q Consensus 40 ~~~~~~Vvv--y~~~~Cp~C~~ak~~L 64 (141)
+....++.| .+..|||+|...+..|
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L 80 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWAL 80 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHH
Confidence 444444444 4567799999877655
No 305
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=49.51 E-value=54 Score=23.40 Aligned_cols=37 Identities=8% Similarity=0.213 Sum_probs=26.9
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHhcC--CCceEEEecC
Q 032422 42 SEHPVIIFSRSSCCMCHVMKTLFATIG--VHPTVIELDD 78 (141)
Q Consensus 42 ~~~~Vvvy~~~~Cp~C~~ak~~L~~~g--i~~~~idid~ 78 (141)
+....+|+.-..||+|....++|.++. -.+...++..
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~ 44 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQS 44 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccC
Confidence 345567777899999999999998763 3456666643
No 306
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=49.44 E-value=51 Score=20.57 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCC
Q 032422 31 ESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVH 70 (141)
Q Consensus 31 ~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~ 70 (141)
.+..+.+..+-+..+|++|.. ++..+..+...|...|.+
T Consensus 44 ~~~~~~~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 44 DSLDDWLGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHHHHhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 344555666557788999987 777888888899998865
No 307
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=49.42 E-value=17 Score=26.02 Aligned_cols=27 Identities=7% Similarity=0.013 Sum_probs=19.4
Q ss_pred EEEEEcCCChhHHHHHHHHHh----cCCCce
Q 032422 46 VIIFSRSSCCMCHVMKTLFAT----IGVHPT 72 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~----~gi~~~ 72 (141)
|.+|+-.-||||--+...|.+ .+++++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~ 31 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVR 31 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeE
Confidence 458899999999877766654 455444
No 308
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=49.24 E-value=45 Score=25.72 Aligned_cols=51 Identities=8% Similarity=0.199 Sum_probs=40.2
Q ss_pred chhHHHHHHHHhcCCCEEEEEcC-----CChhHHHHHHHHHhc------CCCceEEEecCCC
Q 032422 30 EESSEARIQRLISEHPVIIFSRS-----SCCMCHVMKTLFATI------GVHPTVIELDDHE 80 (141)
Q Consensus 30 ~~~~~~~l~~~~~~~~Vvvy~~~-----~Cp~C~~ak~~L~~~------gi~~~~idid~~~ 80 (141)
++.+.+.++.+-+.-.|.+|..+ .-++=..++.+|+++ ++.++++|.+..+
T Consensus 13 S~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~ 74 (271)
T PF09822_consen 13 SDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENP 74 (271)
T ss_pred CHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCCh
Confidence 46778888888888888888887 567778999999876 5778888876555
No 309
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.18 E-value=1.3e+02 Score=24.54 Aligned_cols=64 Identities=13% Similarity=0.053 Sum_probs=42.5
Q ss_pred CEEEEEcCC-----ChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECC-eEeeccH
Q 032422 45 PVIIFSRSS-----CCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGG-TCVGGLE 118 (141)
Q Consensus 45 ~Vvvy~~~~-----Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G-~~iGG~d 118 (141)
.+.+|+.++ |+.|..+.-++.-.+-+. .+++...+ .+++...+|.+..+. +.|+|++
T Consensus 3 ~L~~~~~~~glptid~~sL~~l~y~kl~~~~l-~v~~ssN~----------------~~s~sg~LP~l~~~ng~~va~~~ 65 (313)
T KOG3028|consen 3 ELHIWSGGYGLPTIDPDSLAALIYLKLAGAPL-KVVVSSNP----------------WRSPSGKLPYLITDNGTKVAGPV 65 (313)
T ss_pred eEEEecCCCCCCCcChhHHHHHHHHHHhCCCc-eeEeecCC----------------CCCCCCCCCeEEecCCceeccHH
Confidence 456777665 999999999888766222 23333332 135556699987754 9999998
Q ss_pred HHHHHHh
Q 032422 119 SLVALHI 125 (141)
Q Consensus 119 el~~l~~ 125 (141)
++....+
T Consensus 66 ~iv~~L~ 72 (313)
T KOG3028|consen 66 KIVQFLK 72 (313)
T ss_pred HHHHHHH
Confidence 8655443
No 310
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=48.61 E-value=87 Score=25.35 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=25.2
Q ss_pred HHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc---C--CCceEEEecC
Q 032422 36 RIQRLISEHPVIIFSRSSCCMCHVMKTLFATI---G--VHPTVIELDD 78 (141)
Q Consensus 36 ~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~---g--i~~~~idid~ 78 (141)
.+.+.+..... ..--+|..|++++-+|+.+ + +.|.-+||+.
T Consensus 69 ~Ia~~i~~~~~--lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 69 DIAASIPSGSM--LVELGSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred HHHHhcCCCCE--EEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 34444444432 3356788999999888765 2 4466666664
No 311
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=47.10 E-value=21 Score=25.80 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=17.2
Q ss_pred CCCCCCCEEEECCeE-eeccHHH
Q 032422 99 RNPAPAPAVFIGGTC-VGGLESL 120 (141)
Q Consensus 99 ~g~~tvP~VfI~G~~-iGG~del 120 (141)
.|..++|+++|||++ +.|....
T Consensus 171 ~gv~G~Pt~vv~g~~~~~G~~~~ 193 (201)
T cd03024 171 LGISGVPFFVFNGKYAVSGAQPP 193 (201)
T ss_pred CCCCcCCEEEECCeEeecCCCCH
Confidence 588999999999874 5776543
No 312
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=46.96 E-value=9.5 Score=33.42 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=38.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCC---------ceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEEC----
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATIGVH---------PTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIG---- 110 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~gi~---------~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~---- 110 (141)
..+|-|..+||++|++-...+++...+ ...||.....+. ... +..+.+.+|+++.-
T Consensus 59 ~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~-------~lC----Ref~V~~~Ptlryf~~~~ 127 (606)
T KOG1731|consen 59 AKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENV-------KLC----REFSVSGYPTLRYFPPDS 127 (606)
T ss_pred hHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhh-------hhH----hhcCCCCCceeeecCCcc
Confidence 456678889999999888777765322 233444322211 122 24678888988652
Q ss_pred -----CeEeecc
Q 032422 111 -----GTCVGGL 117 (141)
Q Consensus 111 -----G~~iGG~ 117 (141)
|+.+.|.
T Consensus 128 ~~~~~G~~~~~~ 139 (606)
T KOG1731|consen 128 QNKTDGSDVSGP 139 (606)
T ss_pred ccCcCCCcccCC
Confidence 5666663
No 313
>PRK13599 putative peroxiredoxin; Provisional
Probab=46.79 E-value=26 Score=26.57 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=11.5
Q ss_pred EEEcCCChhHHHHHHHH
Q 032422 48 IFSRSSCCMCHVMKTLF 64 (141)
Q Consensus 48 vy~~~~Cp~C~~ak~~L 64 (141)
.|-.+|||.|..-...|
T Consensus 35 ~~pa~~tpvCt~El~~l 51 (215)
T PRK13599 35 SHPADFTPVCTTEFVEF 51 (215)
T ss_pred EeCCCCCCcCHHHHHHH
Confidence 35678899998644333
No 314
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=46.68 E-value=13 Score=26.91 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.5
Q ss_pred EEEEEcCCChhHHHHHHHHH
Q 032422 46 VIIFSRSSCCMCHVMKTLFA 65 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~ 65 (141)
|.+|+-.-||||--+..-|.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~ 20 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLE 20 (201)
T ss_pred CeEEecCcCccHHHHHHHHH
Confidence 45899999999996665554
No 315
>PRK15000 peroxidase; Provisional
Probab=46.45 E-value=40 Score=25.13 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=14.8
Q ss_pred cCCCEEEEEcC--CChhHHHHHHHHH
Q 032422 42 SEHPVIIFSRS--SCCMCHVMKTLFA 65 (141)
Q Consensus 42 ~~~~Vvvy~~~--~Cp~C~~ak~~L~ 65 (141)
+...+++|.-+ |||.|..-..-|.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~ 58 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFD 58 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHH
Confidence 44556665544 7999987544443
No 316
>PRK13190 putative peroxiredoxin; Provisional
Probab=46.10 E-value=28 Score=25.92 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=14.7
Q ss_pred CCEEE--EEcCCChhHHHHHHHHH
Q 032422 44 HPVII--FSRSSCCMCHVMKTLFA 65 (141)
Q Consensus 44 ~~Vvv--y~~~~Cp~C~~ak~~L~ 65 (141)
..+++ |..+|||.|..-...|.
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~ 51 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFS 51 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHH
Confidence 34554 67899999986554443
No 317
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=46.04 E-value=28 Score=25.54 Aligned_cols=75 Identities=9% Similarity=0.052 Sum_probs=38.2
Q ss_pred chhHHHHHHHHhc-CCCEEEEEcCCChhHHHHHHHHHhcCCC------------ceEEEecCCCCccCCcccHHHHHhhh
Q 032422 30 EESSEARIQRLIS-EHPVIIFSRSSCCMCHVMKTLFATIGVH------------PTVIELDDHEISALPLVDHDESAHAD 96 (141)
Q Consensus 30 ~~~~~~~l~~~~~-~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~------------~~~idid~~~~~~~~~~l~~~l~~l~ 96 (141)
-+++.+.++++.. ..++.+-|.++-| .-|+++|+.+++. |...+|-..... ..++.+.
T Consensus 47 ypdv~~iL~~L~~~gv~lavASRt~~P--~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~-------~Hf~~i~ 117 (169)
T PF12689_consen 47 YPDVPEILQELKERGVKLAVASRTDEP--DWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKT-------THFRRIH 117 (169)
T ss_dssp -TTHHHHHHHHHHCT--EEEEE--S-H--HHHHHHHHHTT-C----------CCECEEEESSS-HH-------HHHHHHH
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCCh--HHHHHHHHhcCCCccccccccchhhcchhheecCchH-------HHHHHHH
Confidence 3666777776665 3344444444455 8999999998887 344555443211 2344444
Q ss_pred CCCCCCCCCEEEECCeE
Q 032422 97 SPRNPAPAPAVFIGGTC 113 (141)
Q Consensus 97 ~~~g~~tvP~VfI~G~~ 113 (141)
+.+|.+.-=.+|+|++.
T Consensus 118 ~~tgI~y~eMlFFDDe~ 134 (169)
T PF12689_consen 118 RKTGIPYEEMLFFDDES 134 (169)
T ss_dssp HHH---GGGEEEEES-H
T ss_pred HhcCCChhHEEEecCch
Confidence 44665444478888863
No 318
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=45.81 E-value=41 Score=28.34 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=43.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCC---CccCCcccHHHHHhhhCCCCCCCCCE-EEECC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHE---ISALPLVDHDESAHADSPRNPAPAPA-VFIGG 111 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~---~~~~~~~l~~~l~~l~~~~g~~tvP~-VfI~G 111 (141)
+.+|+-|+|.-.--++.+..+.|+++-.++..+.. .++..+.+++.++++.+......-|. +|||.
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 45699999999999999999999998777665432 22222334555554332222234565 68885
No 319
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=44.31 E-value=1.1e+02 Score=23.56 Aligned_cols=67 Identities=6% Similarity=0.180 Sum_probs=45.0
Q ss_pred hhHHHHHHHHhcCCCEEE-EEcCCChhHHHHHHHHHhcCCCceEEEecCCCCc-cCCcccHHHHHhhhCCCCCCCCCEEE
Q 032422 31 ESSEARIQRLISEHPVII-FSRSSCCMCHVMKTLFATIGVHPTVIELDDHEIS-ALPLVDHDESAHADSPRNPAPAPAVF 108 (141)
Q Consensus 31 ~~~~~~l~~~~~~~~Vvv-y~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~-~~~~~l~~~l~~l~~~~g~~tvP~Vf 108 (141)
+++...+-.+-...=||| ..+.+-|.|.=.-..|++++..|..+..-+.+.. .. ..+.....|++|
T Consensus 99 ~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI------------pNYPe~nlPTl~ 166 (240)
T KOG3170|consen 99 PDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI------------PNYPESNLPTLL 166 (240)
T ss_pred hHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc------------CCCcccCCCeEE
Confidence 566666666655555555 6678999999999999999888764444333322 21 134457889988
Q ss_pred E
Q 032422 109 I 109 (141)
Q Consensus 109 I 109 (141)
|
T Consensus 167 V 167 (240)
T KOG3170|consen 167 V 167 (240)
T ss_pred E
Confidence 7
No 320
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=44.31 E-value=71 Score=21.63 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.1
Q ss_pred HhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecC
Q 032422 40 LISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDD 78 (141)
Q Consensus 40 ~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~ 78 (141)
+-+..+|++|...+...+.++..+|+..|.+ ...++.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~G 119 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLEG 119 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeCC
Confidence 3456789999987777788888999999974 555553
No 321
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=43.55 E-value=26 Score=26.41 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCceEE--EecCCC
Q 032422 59 VMKTLFATIGVHPTVI--ELDDHE 80 (141)
Q Consensus 59 ~ak~~L~~~gi~~~~i--did~~~ 80 (141)
+=+++|++.|++|+.+ |+|+..
T Consensus 13 rR~elL~~~gi~f~~~~~~iDE~~ 36 (193)
T COG0424 13 RRRELLEQLGIPFEVIPSDIDEPL 36 (193)
T ss_pred HHHHHHHHCCCCeEEecCCCCCCc
Confidence 4578999999999866 455433
No 322
>PRK13189 peroxiredoxin; Provisional
Probab=43.40 E-value=31 Score=26.20 Aligned_cols=37 Identities=8% Similarity=0.147 Sum_probs=20.7
Q ss_pred cCCCEEE--EEcCCChhHHHHHHHH-------HhcCCCceEEEecC
Q 032422 42 SEHPVII--FSRSSCCMCHVMKTLF-------ATIGVHPTVIELDD 78 (141)
Q Consensus 42 ~~~~Vvv--y~~~~Cp~C~~ak~~L-------~~~gi~~~~idid~ 78 (141)
....+++ |..+|||.|..-...| .+.|+..--+.+|.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3334554 5678999998644333 33455544444443
No 323
>PRK13191 putative peroxiredoxin; Provisional
Probab=43.07 E-value=32 Score=25.98 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=21.5
Q ss_pred CCCEEE--EEcCCChhHHHHHHHHH-------hcCCCceEEEecC
Q 032422 43 EHPVII--FSRSSCCMCHVMKTLFA-------TIGVHPTVIELDD 78 (141)
Q Consensus 43 ~~~Vvv--y~~~~Cp~C~~ak~~L~-------~~gi~~~~idid~ 78 (141)
...+++ |-.+|||.|..-...|. +.|+.+--+.+|.
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds 77 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 334444 56789999987555554 3455544555543
No 324
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=43.03 E-value=41 Score=24.79 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=18.1
Q ss_pred CEEEEEc--CCChhHHHHHHHH-------HhcCCCceEEEecC
Q 032422 45 PVIIFSR--SSCCMCHVMKTLF-------ATIGVHPTVIELDD 78 (141)
Q Consensus 45 ~Vvvy~~--~~Cp~C~~ak~~L-------~~~gi~~~~idid~ 78 (141)
.+++|.. .+||.|.....-| .+.|+++--+.+|.
T Consensus 38 ~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 38 WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 4444433 5688887544333 33466555555554
No 325
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.15 E-value=32 Score=21.91 Aligned_cols=21 Identities=5% Similarity=0.121 Sum_probs=18.2
Q ss_pred ChhHHHHHHHHHhcCCCceEE
Q 032422 54 CCMCHVMKTLFATIGVHPTVI 74 (141)
Q Consensus 54 Cp~C~~ak~~L~~~gi~~~~i 74 (141)
=.||+++.++|+++|+.|+.+
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeee
Confidence 469999999999999988744
No 326
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=39.45 E-value=29 Score=20.81 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=28.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCe
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGT 112 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~ 112 (141)
+.+|+..+=..+..++.+|++.||++...+-..... . - ..|..+.+.|+|...
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~--~--------g----~~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY--A--------G----EPGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS-----------------S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh--h--------c----ccCccCceEEEECHH
Confidence 356777777788899999999999988765443221 0 0 134444588888774
No 327
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=38.78 E-value=50 Score=24.19 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=28.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHE 80 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~ 80 (141)
|++=++|.-+.-+++.+.|++.|++|+..-+..+-
T Consensus 7 IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHR 41 (162)
T COG0041 7 IIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHR 41 (162)
T ss_pred EEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccC
Confidence 45556677888999999999999999988777654
No 328
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=38.59 E-value=31 Score=25.10 Aligned_cols=20 Identities=15% Similarity=0.488 Sum_probs=14.6
Q ss_pred EEEcCCChhHHHHHHHHHhc
Q 032422 48 IFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 48 vy~~~~Cp~C~~ak~~L~~~ 67 (141)
+|+.|.|++|......|.+.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl 21 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKL 21 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHH
Confidence 68999999999887777653
No 329
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=38.16 E-value=72 Score=22.65 Aligned_cols=45 Identities=22% Similarity=0.446 Sum_probs=28.8
Q ss_pred HHHHHhc--CCCEEE--EEcCCChhHHHHHHHHHhcC--C-C---ceEEEecCCC
Q 032422 36 RIQRLIS--EHPVII--FSRSSCCMCHVMKTLFATIG--V-H---PTVIELDDHE 80 (141)
Q Consensus 36 ~l~~~~~--~~~Vvv--y~~~~Cp~C~~ak~~L~~~g--i-~---~~~idid~~~ 80 (141)
.+++++. ..+|+| |+.+|-|.|-+.-++|.+.. + . .-.+|+++.+
T Consensus 10 ~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp 64 (133)
T PF02966_consen 10 HVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP 64 (133)
T ss_dssp HHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH
T ss_pred hHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccch
Confidence 3444442 356654 99999999999999997642 1 1 3456776555
No 330
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=37.96 E-value=1.8e+02 Score=23.64 Aligned_cols=93 Identities=9% Similarity=0.074 Sum_probs=58.8
Q ss_pred chhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecC--C----------C-Ccc-----CC-cccHH
Q 032422 30 EESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDD--H----------E-ISA-----LP-LVDHD 90 (141)
Q Consensus 30 ~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~--~----------~-~~~-----~~-~~l~~ 90 (141)
+..+...+.++++..-+.|++-.+++-+..+..+.++.++|+-...-.. . + ... .+ ..+..
T Consensus 48 ~~~a~~~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~f~~rp~~~~~~ 127 (363)
T cd06381 48 HFDAVQEACDLMNQGILALVTSTGCASAIALQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYTLALRPPVRLND 127 (363)
T ss_pred hHHHHHHHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeEEEEeccHHHHH
Confidence 3667778888998866668999999999999999999999875421100 0 0 000 00 01234
Q ss_pred HHHhhhCCCCCCCCCEEEECCeEeeccHHHHH
Q 032422 91 ESAHADSPRNPAPAPAVFIGGTCVGGLESLVA 122 (141)
Q Consensus 91 ~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~ 122 (141)
++..+.+..||+.+=.++.+.....|.+++.+
T Consensus 128 ai~~lv~~~~wkkvavly~~d~g~~~l~~~~~ 159 (363)
T cd06381 128 VMLRLVTEWRWQKFVYFYDNDYDIRGLQEFLD 159 (363)
T ss_pred HHHHHHHhCCCeEEEEEEECCchHHHHHHHHH
Confidence 45555556688887777777764444444433
No 331
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=37.17 E-value=77 Score=22.41 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=13.7
Q ss_pred HHHhcCCCEEEEEc--CCChhHHHH
Q 032422 38 QRLISEHPVIIFSR--SSCCMCHVM 60 (141)
Q Consensus 38 ~~~~~~~~Vvvy~~--~~Cp~C~~a 60 (141)
.++....++++|.- .+||.|..-
T Consensus 24 ~~~~~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 24 SELFKGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred HHHhCCCcEEEEEeCCCCCCCCchh
Confidence 33334456666554 569999764
No 332
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.11 E-value=20 Score=28.72 Aligned_cols=13 Identities=15% Similarity=0.508 Sum_probs=9.3
Q ss_pred EcCCChhHHHHHH
Q 032422 50 SRSSCCMCHVMKT 62 (141)
Q Consensus 50 ~~~~Cp~C~~ak~ 62 (141)
-++.||||++-.+
T Consensus 269 KkqtCPYCKekVd 281 (328)
T KOG1734|consen 269 KKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCchHHHHhh
Confidence 3578999986543
No 333
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=36.61 E-value=47 Score=24.57 Aligned_cols=33 Identities=6% Similarity=0.018 Sum_probs=22.4
Q ss_pred CEEEEEcCCChhHHHHHHHHH----hcCCC--ceEEEec
Q 032422 45 PVIIFSRSSCCMCHVMKTLFA----TIGVH--PTVIELD 77 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~----~~gi~--~~~idid 77 (141)
+|-+|+-.-||||-=+++.|. ..+++ +.-+.++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L~ 40 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFLG 40 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 577999999999987766664 34444 4455553
No 334
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=36.58 E-value=29 Score=23.41 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=13.7
Q ss_pred CCCCCEEEECCeEeeccH
Q 032422 101 PAPAPAVFIGGTCVGGLE 118 (141)
Q Consensus 101 ~~tvP~VfI~G~~iGG~d 118 (141)
....=++||||.++|.+.
T Consensus 61 ~~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 61 NAFRASVWVNGWFLGSYW 78 (111)
T ss_dssp TTEEEEEEETTEEEEEEE
T ss_pred CceEEEEEECCEEeeeec
Confidence 344458999999999764
No 335
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=35.76 E-value=49 Score=24.11 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=46.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhC-------------------CCCCCCCCE
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADS-------------------PRNPAPAPA 106 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~-------------------~~g~~tvP~ 106 (141)
|++=+++.=|+++++...|+++|++|+..-+..+-.-.. +.++.++..+ ..+..++|+
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~---~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PV 79 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPEL---MLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPV 79 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHH---HHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCE
Confidence 445566778999999999999999987665554432111 2222222111 012356777
Q ss_pred E--EECCeEeeccHHHHHHHh
Q 032422 107 V--FIGGTCVGGLESLVALHI 125 (141)
Q Consensus 107 V--fI~G~~iGG~del~~l~~ 125 (141)
| -+.....+|.|.+....+
T Consensus 80 IgvP~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 80 IGVPVPSKALSGLDSLLSIVQ 100 (156)
T ss_pred EEecCCccCCCCHHHHHHHhc
Confidence 6 334455778887776655
No 336
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=35.72 E-value=1.2e+02 Score=24.86 Aligned_cols=88 Identities=6% Similarity=-0.098 Sum_probs=62.1
Q ss_pred chhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEec----------CCCCccCCcccHHHHHhhhCCC
Q 032422 30 EESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD----------DHEISALPLVDHDESAHADSPR 99 (141)
Q Consensus 30 ~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid----------~~~~~~~~~~l~~~l~~l~~~~ 99 (141)
+-++.+++-++++..-+.||+-+.|.--.-+..+-+...|||-....+ ..|. +..++..+.+..
T Consensus 49 sf~~~~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~------l~~Ai~diI~~~ 122 (372)
T cd06387 49 SFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPA------LKGAILSLLAHY 122 (372)
T ss_pred hHHHHHHHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChh------HHHHHHHHHHhc
Confidence 466788889999999999999999988788888888888988553222 2221 234555565678
Q ss_pred CCCCCCEEEECCeEeeccHHHHHH
Q 032422 100 NPAPAPAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 100 g~~tvP~VfI~G~~iGG~del~~l 123 (141)
||+.+=.||-+..-+++..++.+.
T Consensus 123 ~Wr~~~~iYd~d~gl~~Lq~L~~~ 146 (372)
T cd06387 123 KWEKFVYLYDTERGFSILQAIMEA 146 (372)
T ss_pred CCCEEEEEecCchhHHHHHHHHHh
Confidence 999998888665555555554443
No 337
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=35.32 E-value=91 Score=20.33 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=26.7
Q ss_pred HHHHhcCCCEEEEEcC-CChhHHHHHHHHHhcCCCceEEEec
Q 032422 37 IQRLISEHPVIIFSRS-SCCMCHVMKTLFATIGVHPTVIELD 77 (141)
Q Consensus 37 l~~~~~~~~Vvvy~~~-~Cp~C~~ak~~L~~~gi~~~~idid 77 (141)
...+-...+|++|... .|.....+...|.+.|.+ ...++
T Consensus 58 ~~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~--v~~l~ 97 (110)
T cd01521 58 TAKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP--VKEMI 97 (110)
T ss_pred hhcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe--EEEec
Confidence 3344467889999765 366777788888888885 34444
No 338
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=34.45 E-value=80 Score=21.18 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=28.7
Q ss_pred CCCEEEEEc-CCChhHHHHHHHHHhcCCCceEEEecC
Q 032422 43 EHPVIIFSR-SSCCMCHVMKTLFATIGVHPTVIELDD 78 (141)
Q Consensus 43 ~~~Vvvy~~-~~Cp~C~~ak~~L~~~gi~~~~idid~ 78 (141)
...+++++. +....|.+|.+.|.+.|++...+++-.
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~ 45 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRT 45 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEE
Confidence 456676665 447999999999999999998888754
No 339
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=33.70 E-value=55 Score=22.57 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=19.4
Q ss_pred CCCCCCCEEEECCeE-eeccHHHHHH
Q 032422 99 RNPAPAPAVFIGGTC-VGGLESLVAL 123 (141)
Q Consensus 99 ~g~~tvP~VfI~G~~-iGG~del~~l 123 (141)
.|...+|.|.+|+++ |-|-.|+.++
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~A 104 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVARA 104 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHHH
Confidence 688999999999976 4677666543
No 340
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.42 E-value=28 Score=27.12 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=40.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC-------CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE--EECCeEe
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIG-------VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV--FIGGTCV 114 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~g-------i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V--fI~G~~i 114 (141)
++-|.+.|.|.|.+.-..+.++. ..|-.+||..-++.+.. ++ .-...+.+..|++ |=+|+-+
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~k------fr-is~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAK------FR-ISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHh------ee-eccCcccccCCeEEEEccchhh
Confidence 45588899999999888887654 44568899887764321 11 0012356778875 5566544
No 341
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=33.04 E-value=16 Score=24.32 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=20.7
Q ss_pred CCCccCCCcceeeecCCCCCCCCCCCCcchhHHHHHHHHhcCCCE
Q 032422 2 QGLRRYPNDVVHLDLTPPSSTTNLSIDGEESSEARIQRLISEHPV 46 (141)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V 46 (141)
+|||+|+||++= .++.+++.+.+..++.
T Consensus 21 ~~lr~y~~CF~g-----------------sEAVDwL~~~l~~n~~ 48 (92)
T cd04447 21 QHFKSYENCFTA-----------------SEAVDWLHELLRSNSN 48 (92)
T ss_pred HhcccCccccch-----------------HHHHHHHHHHHHhccc
Confidence 689999999852 5677777777766655
No 342
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=32.86 E-value=34 Score=23.20 Aligned_cols=17 Identities=35% Similarity=0.469 Sum_probs=13.7
Q ss_pred CCCCCCEEEECCeEeec
Q 032422 100 NPAPAPAVFIGGTCVGG 116 (141)
Q Consensus 100 g~~tvP~VfI~G~~iGG 116 (141)
.-...|.||.||+.||=
T Consensus 78 kDECTplvF~n~~LvgW 94 (102)
T PF11399_consen 78 KDECTPLVFKNGKLVGW 94 (102)
T ss_pred CCceEEEEEECCEEEEE
Confidence 34567999999999983
No 343
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=32.37 E-value=66 Score=22.40 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=33.7
Q ss_pred cchhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCce
Q 032422 29 GEESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPT 72 (141)
Q Consensus 29 ~~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~ 72 (141)
..+.+.++++.+.....|+|||...=.|+..+.+.|+..+..+.
T Consensus 37 ~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~~ 80 (159)
T PF03031_consen 37 LRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPNGKLFS 80 (159)
T ss_dssp E-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSEE
T ss_pred eCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhccccc
Confidence 35778899999988899999999988899999999986554443
No 344
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=31.87 E-value=44 Score=20.66 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=19.5
Q ss_pred CCCCCCCCEEEECCeEeeccHHH-HHHHhCCCcHHHHHhc
Q 032422 98 PRNPAPAPAVFIGGTCVGGLESL-VALHIGGHLVPKLVEI 136 (141)
Q Consensus 98 ~~g~~tvP~VfI~G~~iGG~del-~~l~~~g~L~~~L~~~ 136 (141)
..|....|.| |||.|=+ ...-+.-+|.++|+.+
T Consensus 12 ~pGa~~lP~I------IGGSDLi~h~~~knseleeWl~~e 45 (65)
T PF08599_consen 12 YPGAGGLPHI------IGGSDLIAHHAGKNSELEEWLRQE 45 (65)
T ss_pred cCCCCCCCee------ecchhhhhccccccccHHHHHHHH
Confidence 3577788875 5666532 2222344788888753
No 345
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.17 E-value=1.3e+02 Score=23.26 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHHhCC--Cc
Q 032422 52 SSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGG--HL 129 (141)
Q Consensus 52 ~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~~~g--~L 129 (141)
+.---|-.++.+|.-.+.+|.+.--+..+ . .+....+|-+-+|.+.+.+|.-+....+.. .|
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~Nae----------f------mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l 95 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRANAE----------F------MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTL 95 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecCCcc----------c------cCCCCCCceeeecchhhhhhhHHHHHHHHhccch
Confidence 44557889999999999999877544322 1 232348999999999999998776654432 34
Q ss_pred HHHH
Q 032422 130 VPKL 133 (141)
Q Consensus 130 ~~~L 133 (141)
..++
T Consensus 96 ~s~l 99 (257)
T KOG3027|consen 96 TSWL 99 (257)
T ss_pred hhhh
Confidence 4444
No 346
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=30.89 E-value=53 Score=23.11 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHHhCCCcHHHHHh
Q 032422 56 MCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVE 135 (141)
Q Consensus 56 ~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~~~g~L~~~L~~ 135 (141)
|-.+.++.|.++|+.+..+++....... ..+.+ .+.-.||+.| |.-..+....++-.|.+.|++
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~~~-------~~~~i------~~ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRNDAD-------ILEAI------READAIFLGG---GDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGHHH-------HHHHH------HHSSEEEE-----S-HHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCChHH-------HHHHH------HhCCEEEECC---CCHHHHHHHHHhCCHHHHHHH
Confidence 3467889999999887777776543221 22221 2345788876 333344444444556666654
No 347
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=30.62 E-value=2.6e+02 Score=22.66 Aligned_cols=95 Identities=7% Similarity=-0.056 Sum_probs=62.6
Q ss_pred cchhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCC-CCcc---CCcccHHHHHhhhCCCCCCCC
Q 032422 29 GEESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDH-EISA---LPLVDHDESAHADSPRNPAPA 104 (141)
Q Consensus 29 ~~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~-~~~~---~~~~l~~~l~~l~~~~g~~tv 104 (141)
.+-.+.+++-++++..-+.||+-.++.-+..+..+.++.+||+-....+.. .... ....++.++..+.+..||+++
T Consensus 48 dsf~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~~~~wk~v 127 (371)
T cd06388 48 NSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWNRF 127 (371)
T ss_pred ChhHHHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHHHhcCceEE
Confidence 346778889999999999999999999999999999999998754332210 0000 000012233334445789998
Q ss_pred CEEEECCeEeeccHHHHHH
Q 032422 105 PAVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 105 P~VfI~G~~iGG~del~~l 123 (141)
=.+|..+.-++..+.+.+.
T Consensus 128 aiiYd~~~~~~~lq~l~~~ 146 (371)
T cd06388 128 VFLYDTDRGYSILQAIMEK 146 (371)
T ss_pred EEEecCCccHHHHHHHHHh
Confidence 8888756655666555443
No 348
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=30.31 E-value=86 Score=21.12 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=29.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCC
Q 032422 45 PVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHE 80 (141)
Q Consensus 45 ~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~ 80 (141)
+|++++.++|.-..-++.+.+..+.++..+.+...-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~ 36 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDT 36 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccc
Confidence 478999999999999999999998888888776644
No 349
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=30.31 E-value=79 Score=26.86 Aligned_cols=44 Identities=18% Similarity=0.443 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCEEEEE-----cCCChhHHHHHHHHHhcCCCceEEEec
Q 032422 34 EARIQRLISEHPVIIFS-----RSSCCMCHVMKTLFATIGVHPTVIELD 77 (141)
Q Consensus 34 ~~~l~~~~~~~~Vvvy~-----~~~Cp~C~~ak~~L~~~gi~~~~idid 77 (141)
-..+..+...+.|||=. .++|-||+-++..|...|-+.+.+++-
T Consensus 207 gPiiaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~i 255 (583)
T KOG2454|consen 207 GPIIAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVI 255 (583)
T ss_pred hHHHHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhhee
Confidence 44567778888888854 367999999999999999988776654
No 350
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.16 E-value=1.6e+02 Score=19.25 Aligned_cols=43 Identities=7% Similarity=0.091 Sum_probs=27.6
Q ss_pred chhHHHHHHHHhcCCCEEEEEcCCC-hhHHHHHHHHHhcCCCce
Q 032422 30 EESSEARIQRLISEHPVIIFSRSSC-CMCHVMKTLFATIGVHPT 72 (141)
Q Consensus 30 ~~~~~~~l~~~~~~~~Vvvy~~~~C-p~C~~ak~~L~~~gi~~~ 72 (141)
.+.+.+.++.+-+.++-++|.+.++ .--....+.|.+.|++..
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCC
Confidence 3677888888888766555555554 443666777799999853
No 351
>PRK01415 hypothetical protein; Validated
Probab=29.66 E-value=1.1e+02 Score=23.93 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=28.6
Q ss_pred HHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEec
Q 032422 38 QRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD 77 (141)
Q Consensus 38 ~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid 77 (141)
.+..+..+|++|.+++ .-|.++..+|.+.|.+ .++.+.
T Consensus 166 ~~~~k~k~Iv~yCtgG-iRs~kAa~~L~~~Gf~-~Vy~L~ 203 (247)
T PRK01415 166 QELLKGKKIAMVCTGG-IRCEKSTSLLKSIGYD-EVYHLK 203 (247)
T ss_pred hhhcCCCeEEEECCCC-hHHHHHHHHHHHcCCC-cEEEec
Confidence 3455678899999776 7799999999999874 244554
No 352
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=29.53 E-value=61 Score=21.14 Aligned_cols=64 Identities=11% Similarity=0.050 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhcCCCceEEEecCCC------CccC---CcccHHHHHhhhCCCCCCCCCEEEECCeEeeccH
Q 032422 55 CMCHVMKTLFATIGVHPTVIELDDHE------ISAL---PLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLE 118 (141)
Q Consensus 55 p~C~~ak~~L~~~gi~~~~idid~~~------~~~~---~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~d 118 (141)
-...++++++++.|++++..-.+... +... ...++..++++++......+|...|+.+..|-.+
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~d 86 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMMN 86 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhcccCC
Confidence 45667777777777765433222110 0000 0113344555544455678999999998877554
No 353
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=29.16 E-value=64 Score=17.89 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=17.7
Q ss_pred EEECCeEeecc--HHHHHHHhCCCcH
Q 032422 107 VFIGGTCVGGL--ESLVALHIGGHLV 130 (141)
Q Consensus 107 VfI~G~~iGG~--del~~l~~~g~L~ 130 (141)
+..||+..|-+ +++.++..+|++.
T Consensus 4 ~~~~g~~~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 4 YARNGQQQGPFSLEELRQLISSGEID 29 (45)
T ss_pred EeCCCeEECCcCHHHHHHHHHcCCCC
Confidence 34578888866 5688888888774
No 354
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=29.04 E-value=1.3e+02 Score=19.81 Aligned_cols=29 Identities=7% Similarity=0.149 Sum_probs=22.1
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHhcCCC
Q 032422 42 SEHPVIIFSRSSCCMCHVMKTLFATIGVH 70 (141)
Q Consensus 42 ~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~ 70 (141)
...+|++|..+++.....+..+|...|.+
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHE 106 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCC
Confidence 45678888877666777777888888876
No 355
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.61 E-value=1.7e+02 Score=18.87 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCEEEEEcCCChh--HHHHHHHHHhcCCCceEEE
Q 032422 34 EARIQRLISEHPVIIFSRSSCCM--CHVMKTLFATIGVHPTVIE 75 (141)
Q Consensus 34 ~~~l~~~~~~~~Vvvy~~~~Cp~--C~~ak~~L~~~gi~~~~id 75 (141)
...+...++...+||+.++.+.+ +..+++.-++.++++.+..
T Consensus 39 ~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 39 ASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred hhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 34577888888888888777654 5788888888888876653
No 356
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=28.34 E-value=14 Score=28.99 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=8.8
Q ss_pred EcCCChhHHHH
Q 032422 50 SRSSCCMCHVM 60 (141)
Q Consensus 50 ~~~~Cp~C~~a 60 (141)
-++||.||.+-
T Consensus 9 ~kpwcwycnre 19 (341)
T KOG2893|consen 9 DKPWCWYCNRE 19 (341)
T ss_pred CCceeeecccc
Confidence 47999999853
No 357
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=28.00 E-value=47 Score=20.01 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=9.7
Q ss_pred EEEECCeEeec
Q 032422 106 AVFIGGTCVGG 116 (141)
Q Consensus 106 ~VfI~G~~iGG 116 (141)
.|||||+++|-
T Consensus 14 ~V~vdg~~~G~ 24 (71)
T PF08308_consen 14 EVYVDGKYIGT 24 (71)
T ss_pred EEEECCEEecc
Confidence 69999999994
No 358
>PF15616 TerY-C: TerY-C metal binding domain
Probab=27.63 E-value=18 Score=25.63 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=10.3
Q ss_pred EEEcCCChhHHHHH
Q 032422 48 IFSRSSCCMCHVMK 61 (141)
Q Consensus 48 vy~~~~Cp~C~~ak 61 (141)
+.+.|+||+|-...
T Consensus 74 L~g~PgCP~CGn~~ 87 (131)
T PF15616_consen 74 LIGAPGCPHCGNQY 87 (131)
T ss_pred hcCCCCCCCCcChh
Confidence 45669999997553
No 359
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=27.56 E-value=38 Score=26.06 Aligned_cols=18 Identities=11% Similarity=0.423 Sum_probs=15.3
Q ss_pred CCCEEEEEcCCChhHHHH
Q 032422 43 EHPVIIFSRSSCCMCHVM 60 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~C~~a 60 (141)
.-.|.+|+.+-||+|.+-
T Consensus 40 ~v~ItlyyEaLCPdc~~F 57 (220)
T KOG3160|consen 40 KVNITLYYEALCPDCSKF 57 (220)
T ss_pred eeEEEEEEEecCccHHHH
Confidence 457889999999999864
No 360
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=27.50 E-value=17 Score=20.68 Aligned_cols=6 Identities=33% Similarity=0.949 Sum_probs=4.1
Q ss_pred ChhHHH
Q 032422 54 CCMCHV 59 (141)
Q Consensus 54 Cp~C~~ 59 (141)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 777754
No 361
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=26.84 E-value=63 Score=24.79 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=17.1
Q ss_pred CCChhHHHHHHHHHhcCCC
Q 032422 52 SSCCMCHVMKTLFATIGVH 70 (141)
Q Consensus 52 ~~Cp~C~~ak~~L~~~gi~ 70 (141)
..||.++.+++.|.+.|+.
T Consensus 154 ~~~pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 154 SGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred ccCcHHHHHHHHHHHcCCC
Confidence 4599999999999999886
No 362
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=26.84 E-value=47 Score=21.74 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCc
Q 032422 34 EARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHP 71 (141)
Q Consensus 34 ~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~ 71 (141)
.+.+++.... ++..|..|+..+-..+.+++.+.|..|
T Consensus 86 ~~~l~~~~g~-~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 86 REILEEITGR-PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp HHHHHHHHSS-EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHHHHhCC-CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 4445555555 777888888888889999999988765
No 363
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=26.75 E-value=1e+02 Score=19.03 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=14.9
Q ss_pred CCCCCEEEECCeEeeccH
Q 032422 101 PAPAPAVFIGGTCVGGLE 118 (141)
Q Consensus 101 ~~tvP~VfI~G~~iGG~d 118 (141)
...-|.+.|||++++..+
T Consensus 44 C~~gP~v~V~~~~~~~~t 61 (72)
T cd03082 44 CERAPAALVGQRPVDGAT 61 (72)
T ss_pred cCCCCeEEECCEEeCCcC
Confidence 456799999999998764
No 364
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=26.70 E-value=53 Score=22.15 Aligned_cols=18 Identities=33% Similarity=0.702 Sum_probs=14.2
Q ss_pred CCCCCCEEEECCeEeecc
Q 032422 100 NPAPAPAVFIGGTCVGGL 117 (141)
Q Consensus 100 g~~tvP~VfI~G~~iGG~ 117 (141)
|...-|.|||||+.+|..
T Consensus 38 g~~~~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 38 GSAVKPDVYVDGELIGEL 55 (117)
T ss_pred CccccceEEECCEEEEEe
Confidence 445669999999999854
No 365
>PRK08118 topology modulation protein; Reviewed
Probab=26.40 E-value=99 Score=22.13 Aligned_cols=33 Identities=6% Similarity=0.161 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCCceEEE
Q 032422 43 EHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIE 75 (141)
Q Consensus 43 ~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~id 75 (141)
+.+|+|++.++|.-..-++.+-+..++++..+|
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 357999999999999999999999998866555
No 366
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=26.16 E-value=1.3e+02 Score=18.18 Aligned_cols=30 Identities=17% Similarity=0.291 Sum_probs=22.7
Q ss_pred hcCCCEEEEEcCCChhHHHHHHHHHhcCCCc
Q 032422 41 ISEHPVIIFSRSSCCMCHVMKTLFATIGVHP 71 (141)
Q Consensus 41 ~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~ 71 (141)
....+|++|. .++..+..+...|.+.|.+-
T Consensus 54 ~~~~~iv~~c-~~g~~a~~~~~~l~~~G~~~ 83 (100)
T smart00450 54 DKDKPVVVYC-RSGNRSAKAAWLLRELGFKN 83 (100)
T ss_pred CCCCeEEEEe-CCCcHHHHHHHHHHHcCCCc
Confidence 3456788888 56777888888888888763
No 367
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=26.03 E-value=26 Score=23.41 Aligned_cols=11 Identities=18% Similarity=0.477 Sum_probs=9.4
Q ss_pred CCCccCCCcce
Q 032422 2 QGLRRYPNDVV 12 (141)
Q Consensus 2 ~~~~~~~~~~~ 12 (141)
+|||+|++|++
T Consensus 19 ~~lk~y~~CF~ 29 (95)
T cd04446 19 HNLKSYHDCFL 29 (95)
T ss_pred eeceecccccc
Confidence 58999999986
No 368
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=25.97 E-value=1.7e+02 Score=18.96 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=21.8
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHhcCCC
Q 032422 42 SEHPVIIFSRSSCCMCHVMKTLFATIGVH 70 (141)
Q Consensus 42 ~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~ 70 (141)
+..+|++|... +..+.++...|...|.+
T Consensus 77 ~~~~iv~yc~~-g~~s~~~~~~l~~~G~~ 104 (118)
T cd01449 77 PDKPVIVYCGS-GVTACVLLLALELLGYK 104 (118)
T ss_pred CCCCEEEECCc-HHHHHHHHHHHHHcCCC
Confidence 46688888765 57788888888888875
No 369
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=25.92 E-value=55 Score=22.57 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=18.5
Q ss_pred CCCCCCCEEEECCeEe-eccHHHHH
Q 032422 99 RNPAPAPAVFIGGTCV-GGLESLVA 122 (141)
Q Consensus 99 ~g~~tvP~VfI~G~~i-GG~del~~ 122 (141)
.|..++|.|++|+++| -|-.|+..
T Consensus 80 lGi~k~PAVV~D~~~VVYG~~DV~~ 104 (113)
T TIGR03757 80 LGVTKIPAVVVDRRYVVYGETDVAR 104 (113)
T ss_pred cCCccCCEEEEcCCeEEecCccHHH
Confidence 6899999999999864 56655544
No 370
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=25.85 E-value=46 Score=19.06 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=11.7
Q ss_pred CCCCCEEEECCeEee
Q 032422 101 PAPAPAVFIGGTCVG 115 (141)
Q Consensus 101 ~~tvP~VfI~G~~iG 115 (141)
...+..|||||+.+=
T Consensus 17 ~~GI~~V~VNG~~vv 31 (48)
T PF07908_consen 17 AEGIDYVFVNGQIVV 31 (48)
T ss_dssp -BSEEEEEETTEEEE
T ss_pred CCCEEEEEECCEEEE
Confidence 357889999999764
No 371
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=25.69 E-value=84 Score=21.07 Aligned_cols=61 Identities=13% Similarity=-0.021 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHhcCCCceEEEecC--CCC------ccCC---cccHHHHHhhhCCCCCCCCCEEEECCeEee
Q 032422 55 CMCHVMKTLFATIGVHPTVIELDD--HEI------SALP---LVDHDESAHADSPRNPAPAPAVFIGGTCVG 115 (141)
Q Consensus 55 p~C~~ak~~L~~~gi~~~~idid~--~~~------~~~~---~~l~~~l~~l~~~~g~~tvP~VfI~G~~iG 115 (141)
-...++++++++.|++++..-... .+. .... ..++-.+.++++......+|...|+....|
T Consensus 16 lla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQIPPQAYI 87 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEeCHHHcC
Confidence 566778888888888765422211 100 0000 012222334434555678999999998877
No 372
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=25.43 E-value=81 Score=24.66 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=33.3
Q ss_pred chhHHHHHHHHhcCCCEEEEEcCCChhHHHHH-HHHHhcCCCceEEEecCCC
Q 032422 30 EESSEARIQRLISEHPVIIFSRSSCCMCHVMK-TLFATIGVHPTVIELDDHE 80 (141)
Q Consensus 30 ~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak-~~L~~~gi~~~~idid~~~ 80 (141)
+.++.+.+-..+...-++++=--++|-|++|. ++++++|+.....+||...
T Consensus 191 T~~aLe~lyprl~~GGiIi~DDY~~~gcr~AvdeF~~~~gi~~~l~~id~~~ 242 (248)
T PF05711_consen 191 TKDALEFLYPRLSPGGIIIFDDYGHPGCRKAVDEFRAEHGITDPLHPIDWTG 242 (248)
T ss_dssp HHHHHHHHGGGEEEEEEEEESSTTTHHHHHHHHHHHHHTT--S--EE-SSS-
T ss_pred HHHHHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHHHHcCCCCccEEecCce
Confidence 34455555566677788888877789998875 7778899998888887543
No 373
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=25.23 E-value=51 Score=23.79 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=21.1
Q ss_pred cCCChhHHHHHHHHHhcCCCceEEEecCC
Q 032422 51 RSSCCMCHVMKTLFATIGVHPTVIELDDH 79 (141)
Q Consensus 51 ~~~Cp~C~~ak~~L~~~gi~~~~idid~~ 79 (141)
.+.=|+++++...|+++|++|+..-+..+
T Consensus 10 ~SD~~~~~~a~~~L~~~gi~~~~~V~saH 38 (150)
T PF00731_consen 10 TSDLPIAEEAAKTLEEFGIPYEVRVASAH 38 (150)
T ss_dssp GGGHHHHHHHHHHHHHTT-EEEEEE--TT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEecc
Confidence 34579999999999999999986555443
No 374
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=25.15 E-value=90 Score=25.06 Aligned_cols=74 Identities=5% Similarity=0.085 Sum_probs=50.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeeccHHHHHHHh
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHI 125 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~del~~l~~ 125 (141)
.++|--+..-..++++-.+.+.|++|+.++|+-....... ..+- +......||++.-|...|-.++.++...+
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~e----pwFm---rlNp~gevPVl~~g~~II~d~tqIIdYvE 99 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKE----PWFM---RLNPGGEVPVLIHGDNIISDYTQIIDYVE 99 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccC----chhe---ecCCCCCCceEecCCeecccHHHHHHHHH
Confidence 6789889999999999999999999999999763321110 1111 13344678875545555677777776655
Q ss_pred C
Q 032422 126 G 126 (141)
Q Consensus 126 ~ 126 (141)
+
T Consensus 100 r 100 (325)
T KOG4420|consen 100 R 100 (325)
T ss_pred H
Confidence 4
No 375
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.11 E-value=51 Score=21.99 Aligned_cols=60 Identities=8% Similarity=-0.127 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCCCceEEEecCCC-----Cc-cCC---cccHHHHHhhhCCCCCCCCCEEEECCeEee
Q 032422 56 MCHVMKTLFATIGVHPTVIELDDHE-----IS-ALP---LVDHDESAHADSPRNPAPAPAVFIGGTCVG 115 (141)
Q Consensus 56 ~C~~ak~~L~~~gi~~~~idid~~~-----~~-~~~---~~l~~~l~~l~~~~g~~tvP~VfI~G~~iG 115 (141)
...++++++++.|++++..-....+ +. ... -+.+-.+.++++..+...+|...|+.+..|
T Consensus 16 la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 16 LANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHh
Confidence 4556677777777765433221110 00 000 012223444444566678999999987776
No 376
>COG5427 Uncharacterized membrane protein [Function unknown]
Probab=25.03 E-value=1.2e+02 Score=26.35 Aligned_cols=36 Identities=8% Similarity=0.205 Sum_probs=27.1
Q ss_pred HHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEE
Q 032422 36 RIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIE 75 (141)
Q Consensus 36 ~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~id 75 (141)
.+++-+++.+. +|++.+ |+++.++++++++.|.++-
T Consensus 611 ~V~qR~KDVR~-~YST~~---~~K~~Ei~~KY~V~Yv~~G 646 (684)
T COG5427 611 AVEQRVKDVRV-VYSTTD---AAKRAEILEKYDVTYVWVG 646 (684)
T ss_pred HHHHHhhhhhe-eeecCc---HHHHHHHHHhcCceEEEEc
Confidence 35555666654 788775 5799999999999987763
No 377
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=25.01 E-value=1.2e+02 Score=19.71 Aligned_cols=33 Identities=9% Similarity=0.162 Sum_probs=26.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCceEEEecC
Q 032422 46 VIIFSRSSCCMCHVMKTLFATIGVHPTVIELDD 78 (141)
Q Consensus 46 Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~ 78 (141)
|++++.++|.-..-++.+.+..+.++..++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~ 33 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSE 33 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccc
Confidence 578999999999999999999887766565544
No 378
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=24.93 E-value=2.2e+02 Score=19.01 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=21.7
Q ss_pred HHHHhcCCCEEEEEcCCChhHH----HHHHHHHhcCCCceEEEec
Q 032422 37 IQRLISEHPVIIFSRSSCCMCH----VMKTLFATIGVHPTVIELD 77 (141)
Q Consensus 37 l~~~~~~~~Vvvy~~~~Cp~C~----~ak~~L~~~gi~~~~idid 77 (141)
++++....+|++. .+.++++. .+..+|.....+...|++.
T Consensus 80 l~~l~~~~~I~iW-~~~~~~dq~gl~~~l~~L~~~~~~I~~v~~t 123 (124)
T PF08874_consen 80 LEELPEDDPIVIW-YGDNAYDQLGLRYLLSLLKDKPNRIYVVNVT 123 (124)
T ss_pred HHhCCCCCEEEEE-eCCCHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 4455555655554 45566664 4455555555555555553
No 379
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=24.50 E-value=1.8e+02 Score=17.96 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=27.3
Q ss_pred hHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEec
Q 032422 32 SSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD 77 (141)
Q Consensus 32 ~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid 77 (141)
+..+.+..+-...+|++|..+ ...+..+...|...|. +...++
T Consensus 40 ~~~~~~~~~~~~~~vvl~c~~-g~~a~~~a~~L~~~G~--~v~~l~ 82 (90)
T cd01524 40 ELRDRLNELPKDKEIIVYCAV-GLRGYIAARILTQNGF--KVKNLD 82 (90)
T ss_pred HHHHHHHhcCCCCcEEEEcCC-ChhHHHHHHHHHHCCC--CEEEec
Confidence 344555555456788888754 4556677778888887 444444
No 380
>KOG1740 consensus Predicted mitochondrial/chloroplast ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=24.34 E-value=47 Score=22.52 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.3
Q ss_pred CcceeeecCCCCCCCCC
Q 032422 9 NDVVHLDLTPPSSTTNL 25 (141)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (141)
.|.|+|+.++|.|....
T Consensus 53 GD~VrlepsRPlSk~K~ 69 (107)
T KOG1740|consen 53 GDRVRLEPSRPLSKTKH 69 (107)
T ss_pred cceEEeccCCcccccce
Confidence 47899999999887765
No 381
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=24.23 E-value=30 Score=26.24 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=16.2
Q ss_pred CEEEEEc-C----CChhHHHHHHHHHhcCCCceEEEe
Q 032422 45 PVIIFSR-S----SCCMCHVMKTLFATIGVHPTVIEL 76 (141)
Q Consensus 45 ~Vvvy~~-~----~Cp~C~~ak~~L~~~gi~~~~idi 76 (141)
.-.||.. . +|++|......=.+.+.++....+
T Consensus 22 r~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~ 58 (212)
T COG0602 22 RPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSA 58 (212)
T ss_pred ceeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCH
Confidence 4456665 2 389998655432223334443333
No 382
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=24.06 E-value=2.6e+02 Score=26.61 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=43.1
Q ss_pred CCCcceeeecCCCCCCCCCCCCcc-------hhHHHHHHHHh-cCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEec
Q 032422 7 YPNDVVHLDLTPPSSTTNLSIDGE-------ESSEARIQRLI-SEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD 77 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~-~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid 77 (141)
|.-++|.++.-+|.----...... ..+.+.+.+.- ...+|+||+.+ +--+....++|.+.|+++..++-.
T Consensus 554 Y~L~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~S-ve~sE~Ls~~L~~~gI~h~vLnak 631 (1025)
T PRK12900 554 YKLDVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTAS-VEVSETLSRMLRAKRIAHNVLNAK 631 (1025)
T ss_pred hCCcEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCc-HHHHHHHHHHHHHcCCCceeecCC
Confidence 566777777667743222222111 12222232222 35688888755 888899999999999999888753
No 383
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=23.06 E-value=2.6e+02 Score=21.77 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=28.7
Q ss_pred CCCCCCCcchhHHHHHHHHhcC--CCEEEEEcCC--ChhHHHHHHHHHhcCCCc
Q 032422 22 TTNLSIDGEESSEARIQRLISE--HPVIIFSRSS--CCMCHVMKTLFATIGVHP 71 (141)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~--~~Vvvy~~~~--Cp~C~~ak~~L~~~gi~~ 71 (141)
.|.+.|+. +..++.+.+++++ ..++||..|+ -|--.+++++|.+-+++.
T Consensus 38 gsgaKM~P-e~veaav~~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~Pa 90 (277)
T COG1927 38 GSGAKMDP-ECVEAAVTEMLEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPA 90 (277)
T ss_pred ccccccCh-HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCE
Confidence 34455553 4445555555553 3577777765 466667777777655543
No 384
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.92 E-value=1.4e+02 Score=24.50 Aligned_cols=52 Identities=17% Similarity=0.413 Sum_probs=32.2
Q ss_pred EEEEEc----CCChhHHHHHHHHHhc------------C--CCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEE
Q 032422 46 VIIFSR----SSCCMCHVMKTLFATI------------G--VHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAV 107 (141)
Q Consensus 46 Vvvy~~----~~Cp~C~~ak~~L~~~------------g--i~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~V 107 (141)
|++|+. ..|+-|..+.+-++-. | +=|..+|.++.+ +.++ ..+..++|.+
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p---------~~Fq----~l~ln~~P~l 130 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP---------QVFQ----QLNLNNVPHL 130 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH---------HHHH----HhcccCCCeE
Confidence 556665 4699999887655421 1 114567777644 2444 3567889998
Q ss_pred EEC
Q 032422 108 FIG 110 (141)
Q Consensus 108 fI~ 110 (141)
++=
T Consensus 131 ~~f 133 (331)
T KOG2603|consen 131 VLF 133 (331)
T ss_pred EEe
Confidence 774
No 385
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=22.72 E-value=2.2e+02 Score=24.70 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=42.6
Q ss_pred ceeeecCCCCCCCCCCCCcchhHHHHHHHHhcCCCEEEEEcCCCh-----hHHHHHHHHHhc-----CCCceEEEecCCC
Q 032422 11 VVHLDLTPPSSTTNLSIDGEESSEARIQRLISEHPVIIFSRSSCC-----MCHVMKTLFATI-----GVHPTVIELDDHE 80 (141)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Vvvy~~~~Cp-----~C~~ak~~L~~~-----gi~~~~idid~~~ 80 (141)
..|+|+|.- .--++ ++.+++-++.+-+.-.|.+|..+.-| +=.+++++|+++ ++.++++|-...+
T Consensus 22 ~~R~DlT~~-k~ytL----S~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~ 96 (552)
T TIGR03521 22 FFRFDLTED-KRYTL----SPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEE 96 (552)
T ss_pred eeeEecCCC-Cceec----CHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcc
Confidence 457777632 11222 26667777777777788888776654 446788999865 5777777766654
No 386
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.68 E-value=47 Score=20.14 Aligned_cols=28 Identities=14% Similarity=0.381 Sum_probs=17.3
Q ss_pred HHHHhcCCCEEE-EEc-----------CCChhHHHHHHHH
Q 032422 37 IQRLISEHPVII-FSR-----------SSCCMCHVMKTLF 64 (141)
Q Consensus 37 l~~~~~~~~Vvv-y~~-----------~~Cp~C~~ak~~L 64 (141)
.+.++...+|+- -++ |-||.|+++.+-|
T Consensus 18 ~esav~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 18 AESAVMGTPVVALCGKVWVPTRDPKPFPVCPECKEIYESL 57 (58)
T ss_pred HHHHhcCceeEeeeCceeCCCCCCCCCCCCcCHHHHHHhc
Confidence 345556666653 333 3399999987654
No 387
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.53 E-value=3.2e+02 Score=22.14 Aligned_cols=28 Identities=7% Similarity=0.065 Sum_probs=20.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCc
Q 032422 44 HPVIIFSRSSCCMCHVMKTLFATIGVHP 71 (141)
Q Consensus 44 ~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~ 71 (141)
..|.+|+-|+|...--+|..-+.-...|
T Consensus 190 rgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 190 RGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 4689999999998777776665444444
No 388
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=22.17 E-value=2.1e+02 Score=17.94 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=25.3
Q ss_pred HHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEec
Q 032422 37 IQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD 77 (141)
Q Consensus 37 l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid 77 (141)
...+-...+|++|..++ --+..+...|.+.|.+ ...+.
T Consensus 55 ~~~~~~~~~ivv~C~~G-~rs~~aa~~L~~~G~~--~~~l~ 92 (100)
T cd01523 55 LDQLPDDQEVTVICAKE-GSSQFVAELLAERGYD--VDYLA 92 (100)
T ss_pred HhhCCCCCeEEEEcCCC-CcHHHHHHHHHHcCce--eEEeC
Confidence 34444567888887654 4567788888888876 44443
No 389
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.97 E-value=2.1e+02 Score=22.51 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhcCCCEEEEEcCCC-hhHHHHHHHHHhcCCCce
Q 032422 31 ESSEARIQRLISEHPVIIFSRSSC-CMCHVMKTLFATIGVHPT 72 (141)
Q Consensus 31 ~~~~~~l~~~~~~~~Vvvy~~~~C-p~C~~ak~~L~~~gi~~~ 72 (141)
..+.+.+++++...+|.++..+.| ..|..+..++++.++++-
T Consensus 56 ~~a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i 98 (347)
T cd06340 56 DIGATEAERLITEEGVVALVGAYQSAVTLAASQVAERYGVPFV 98 (347)
T ss_pred HHHHHHHHHHhccCCceEEecccchHhHHHHHHHHHHhCCCEE
Confidence 456777889998877877777766 568888999999888864
No 390
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=21.95 E-value=4.2e+02 Score=21.23 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=39.5
Q ss_pred CCCEEEEEcCCC--hhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeecc
Q 032422 43 EHPVIIFSRSSC--CMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGL 117 (141)
Q Consensus 43 ~~~Vvvy~~~~C--p~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~ 117 (141)
..+++|.+.++- .+..++.+.|+..|+++..+.++..+.......+++.++.+.+..-.+.=..|-|||=-++..
T Consensus 24 ~~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ 100 (345)
T cd08195 24 GSKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDL 100 (345)
T ss_pred CCeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhH
Confidence 356766665543 567888889988888887666654322111111233343333222112235667777444333
No 391
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=21.79 E-value=1.7e+02 Score=20.76 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=31.5
Q ss_pred cchhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc
Q 032422 29 GEESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATI 67 (141)
Q Consensus 29 ~~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~ 67 (141)
..+.+.++++++.....|+|||...=.|...+.+.|+-.
T Consensus 43 ~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp~ 81 (162)
T TIGR02251 43 KRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDRG 81 (162)
T ss_pred ECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCcC
Confidence 357788999999888899999999888877777766643
No 392
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=21.67 E-value=2.9e+02 Score=19.31 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=9.5
Q ss_pred CCCCCCCCEEEE
Q 032422 98 PRNPAPAPAVFI 109 (141)
Q Consensus 98 ~~g~~tvP~VfI 109 (141)
..+...||.+.+
T Consensus 66 ~f~I~~VPa~V~ 77 (130)
T TIGR02742 66 QFDITAVPAFVV 77 (130)
T ss_pred hcCceEcCEEEE
Confidence 578899998755
No 393
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=21.53 E-value=74 Score=22.28 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=16.7
Q ss_pred CCCCCCCCEEEECCeEeeccH
Q 032422 98 PRNPAPAPAVFIGGTCVGGLE 118 (141)
Q Consensus 98 ~~g~~tvP~VfI~G~~iGG~d 118 (141)
..|..+.=.|||||++||..+
T Consensus 91 f~gv~~~a~v~vNG~~vg~~~ 111 (167)
T PF02837_consen 91 FEGVDYAAEVYVNGKLVGSHE 111 (167)
T ss_dssp ESEEESEEEEEETTEEEEEEE
T ss_pred eccceEeeEEEeCCeEEeeeC
Confidence 356778889999999998643
No 394
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=21.07 E-value=1.9e+02 Score=18.04 Aligned_cols=28 Identities=7% Similarity=0.329 Sum_probs=20.9
Q ss_pred CCCEEEEEcCC-ChhHHHHHHHHHhcCCC
Q 032422 43 EHPVIIFSRSS-CCMCHVMKTLFATIGVH 70 (141)
Q Consensus 43 ~~~Vvvy~~~~-Cp~C~~ak~~L~~~gi~ 70 (141)
..+|++|..++ +.....+...|.+.|.+
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYT 78 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCcc
Confidence 66899998775 45556777888888775
No 395
>PF09214 Prd1-P2: Bacteriophage Prd1, adsorption protein P2; InterPro: IPR015297 This entry represents absorption protein P2 (synonym: receptor-binding protein P2) from the bacteriophage PRD1. Absorption protein P2 is a multi-beta-sheet protein whose complicated topology forms an elongated seahorse-shaped molecule with a distinct head, containing a pseudo-beta propeller structure with approximate 6-fold symmetry, and tail (beta-sandwich). They are required for the attachment of the phage to the host conjugative DNA transfer complex. This is a poorly understood large transmembrane complex of unknown architecture, with at least 11 different proteins []. ; PDB: 1N7U_A 1N7V_A.
Probab=21.03 E-value=39 Score=27.87 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=18.3
Q ss_pred eEEEecCCCCccCCcccHHHHHhhhCCCCCCCCCEEEECCeEeecc
Q 032422 72 TVIELDDHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGL 117 (141)
Q Consensus 72 ~~idid~~~~~~~~~~l~~~l~~l~~~~g~~tvP~VfI~G~~iGG~ 117 (141)
.++|||..+.... .+|.+.+|.||-+|.++||-
T Consensus 15 av~didnvp~dss-------------~tgsrwlpsiy~g~ny~~gg 47 (560)
T PF09214_consen 15 AVFDIDNVPEDSS-------------NTGSRWLPSIYQGANYWAGG 47 (560)
T ss_dssp EEEEE-SS---BT-------------TT--SSS-BTT-GGGEE--S
T ss_pred EEEeccCCccccc-------------ccccccccceeccccccCCC
Confidence 4789998775442 48999999999999988764
No 396
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=20.83 E-value=1.7e+02 Score=24.99 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=41.6
Q ss_pred cchhHHHHHHHHhc--CCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEec
Q 032422 29 GEESSEARIQRLIS--EHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD 77 (141)
Q Consensus 29 ~~~~~~~~l~~~~~--~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid 77 (141)
..+++.+.+.++++ ..+-||.+||.=.+=.....+|++.|++.-+-|+.
T Consensus 86 ~aedA~~ii~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~ev~ETDLG 136 (459)
T COG1139 86 DAEDAREIIGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIEVWETDLG 136 (459)
T ss_pred CHHHHHHHHHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCeEEEccHH
Confidence 34788888999998 78889999999988889999999999877666554
No 397
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=20.82 E-value=5.1e+02 Score=22.42 Aligned_cols=81 Identities=16% Similarity=0.295 Sum_probs=45.0
Q ss_pred HHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCccCCcccHHHH-HhhhCCCCCCCCCEE---EECCeEe
Q 032422 39 RLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEISALPLVDHDES-AHADSPRNPAPAPAV---FIGGTCV 114 (141)
Q Consensus 39 ~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~~~~~~l~~~l-~~l~~~~g~~tvP~V---fI~G~~i 114 (141)
-+..-.+.++|+...|.|+.+--..+-..|-. ..+.|+.++.+... -+.+ +++.+.-....+|-+ -.|-...
T Consensus 191 Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd-~c~~v~t~e~Gkm~---~~dLe~kile~k~kg~~Pf~vnaTaGTTV~ 266 (510)
T KOG0629|consen 191 GMFALPPLILFTSEESHYSIKKAAAFLGLGTD-HCIKVKTDERGKMI---PDDLEKKILEAKAKGGVPFFVNATAGTTVL 266 (510)
T ss_pred hhhcCCcEEEEecccchhhHHHHHHHhccCCc-eeEEecccccCccc---hHHHHHHHHHHHhcCCCCeEEEecCCceee
Confidence 34455789999999999997666665566654 34455554444331 1122 221111112234533 3355778
Q ss_pred eccHHHHHH
Q 032422 115 GGLESLVAL 123 (141)
Q Consensus 115 GG~del~~l 123 (141)
|.||++...
T Consensus 267 GAFDdL~~i 275 (510)
T KOG0629|consen 267 GAFDDLNGI 275 (510)
T ss_pred eccCcHHHH
Confidence 999987543
No 398
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=20.70 E-value=3.1e+02 Score=22.12 Aligned_cols=94 Identities=6% Similarity=-0.072 Sum_probs=60.3
Q ss_pred chhHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEecCCCCc----cCCcccHHHHHhhhCCCCCCCCC
Q 032422 30 EESSEARIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELDDHEIS----ALPLVDHDESAHADSPRNPAPAP 105 (141)
Q Consensus 30 ~~~~~~~l~~~~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid~~~~~----~~~~~l~~~l~~l~~~~g~~tvP 105 (141)
+-.+.+++-++++..-+.||+-..+.-+..+..+-++.+||+-....+..... .....+..++..+.+..+|+++=
T Consensus 43 sf~~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~i~~~~wk~va 122 (370)
T cd06389 43 SFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFA 122 (370)
T ss_pred hHHHHHHHHHHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHHHHHhcCCcEEE
Confidence 46677888999999989999999999999999999999999764332210000 00001223343444457899988
Q ss_pred EEEECCeEeeccHHHHHH
Q 032422 106 AVFIGGTCVGGLESLVAL 123 (141)
Q Consensus 106 ~VfI~G~~iGG~del~~l 123 (141)
.+|-+..-.+..+++.+.
T Consensus 123 ilYdsd~gl~~lq~l~~~ 140 (370)
T cd06389 123 YLYDSDRGLSTLQAVLDS 140 (370)
T ss_pred EEecCchHHHHHHHHHHh
Confidence 888654434444444443
No 399
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=20.51 E-value=33 Score=20.60 Aligned_cols=8 Identities=25% Similarity=0.891 Sum_probs=6.0
Q ss_pred CCChhHHH
Q 032422 52 SSCCMCHV 59 (141)
Q Consensus 52 ~~Cp~C~~ 59 (141)
++||+|.+
T Consensus 40 ngCPfC~~ 47 (55)
T PF14447_consen 40 NGCPFCGT 47 (55)
T ss_pred cCCCCCCC
Confidence 67999953
No 400
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=20.20 E-value=4.2e+02 Score=24.42 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=42.4
Q ss_pred cCCCcceeeecCCCCCCCCCCCCc----chh---HHHHHHHH-hcCCCEEEEEcCCChhHHHHHHHHHhcCCCceEEEec
Q 032422 6 RYPNDVVHLDLTPPSSTTNLSIDG----EES---SEARIQRL-ISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD 77 (141)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~l~~~-~~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~~~~idid 77 (141)
.|.-+++.++.-+|.---...+.. ... ..+.+.+. ....+++||+.+ |-.|......|.+.|++...++-+
T Consensus 383 ~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t-~~~se~l~~~L~~~gi~~~~L~~~ 461 (790)
T PRK09200 383 VYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGS-IEQSETFSKLLDEAGIPHNLLNAK 461 (790)
T ss_pred HhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCc-HHHHHHHHHHHHHCCCCEEEecCC
Confidence 356677777666664332222211 111 12222222 245688888855 888999999999999988776554
No 401
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=20.13 E-value=3.1e+02 Score=21.84 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=28.2
Q ss_pred hhHHHHHHHHh--cCCCEEEEEcCCChhHHHHHHHHHhcCCC
Q 032422 31 ESSEARIQRLI--SEHPVIIFSRSSCCMCHVMKTLFATIGVH 70 (141)
Q Consensus 31 ~~~~~~l~~~~--~~~~Vvvy~~~~Cp~C~~ak~~L~~~gi~ 70 (141)
++..+.++++= ...+||||...+-....++..+|...|.+
T Consensus 89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~ 130 (320)
T PLN02723 89 EAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHE 130 (320)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCC
Confidence 34455555542 45689999877777777888889988875
Done!