BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032423
MKEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEERKWK
KVINGTTVGYQRLLQFPTVKSQQLRFVIDKSRAEPLISHLGIYMDKFSTVSSMSDSTSQT
SLNGSHILQKSMSNHSEIAAI

High Scoring Gene Products

Symbol, full name Information P value
FUC1
AT2G28100 		protein from Arabidopsis thaliana 3.3e-28

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032423
        (141 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2046173 - symbol:FUC1 "alpha-L-fucosidase 1" s...   318  3.3e-28   1


>TAIR|locus:2046173 [details] [associations]
            symbol:FUC1 "alpha-L-fucosidase 1" species:3702
            "Arabidopsis thaliana" [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0004560 "alpha-L-fucosidase activity"
            evidence=IEA;ISS;IDA] [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0005975 "carbohydrate metabolic process"
            evidence=IEA] [GO:0043169 "cation binding" evidence=IEA]
            [GO:0005773 "vacuole" evidence=IDA] [GO:0006516 "glycoprotein
            catabolic process" evidence=TAS] InterPro:IPR000933
            InterPro:IPR013781 Pfam:PF01120 PROSITE:PS00385 SMART:SM00812
            GO:GO:0005773 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0043169
            Gene3D:3.20.20.80 InterPro:IPR017853 SUPFAM:SSF51445 GO:GO:0048046
            GO:GO:0005975 EMBL:AC005851 InterPro:IPR008979 SUPFAM:SSF49785
            GO:GO:0004560 GO:GO:0006516 EMBL:AK119039 IPI:IPI00519340
            PIR:G84680 RefSeq:NP_180377.2 UniGene:At.38664 UniGene:At.66367
            ProteinModelPortal:Q8GW72 SMR:Q8GW72 IntAct:Q8GW72 STRING:Q8GW72
            CAZy:GH29 PaxDb:Q8GW72 PRIDE:Q8GW72 EnsemblPlants:AT2G28100.1
            GeneID:817355 KEGG:ath:AT2G28100 TAIR:At2g28100 eggNOG:COG3669
            HOGENOM:HOG000221495 InParanoid:Q8GW72 KO:K01206 OMA:KVRVMIT
            BioCyc:ARA:AT2G28100-MONOMER BioCyc:MetaCyc:AT2G28100-MONOMER
            Genevestigator:Q8GW72 GermOnline:AT2G28100 PANTHER:PTHR10030
            Uniprot:Q8GW72
        Length = 506

 Score = 318 (117.0 bits), Expect = 3.3e-28, P = 3.3e-28
 Identities = 57/109 (52%), Positives = 85/109 (77%)

Query:     1 MKEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNE-ERKW 59
             ++E +  YWAPEEN ++W L +  ++ VSFNVL+++EPIHMGQRI+ FHL+       +W
Sbjct:   373 LEEGLDKYWAPEENQNEWVLYLEFKDLVSFNVLEIREPIHMGQRIASFHLETRKTGSGEW 432

Query:    60 KKVINGTTVGYQRLLQF-PTVKSQQLRFVIDKSRAEPLISHLGIYMDKF 107
             ++V++GTTVG +RLL+F   V+S+ L+ V+DK+R +PLIS+LG+YMDKF
Sbjct:   433 ERVVSGTTVGNKRLLRFLNVVESRSLKLVVDKARTDPLISYLGLYMDKF 481


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      141       127   0.00091  102 3  11 22  0.37    31
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  137 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.46u 0.10s 11.56t   Elapsed:  00:00:01
  Total cpu time:  11.46u 0.10s 11.56t   Elapsed:  00:00:01
  Start:  Sat May 11 04:59:50 2013   End:  Sat May 11 04:59:51 2013

Back to top