BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032423
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UET|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT
COMPLEXED WITH LACTO-N- Fucopentaose Ii
pdb|3UET|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT
COMPLEXED WITH LACTO-N- Fucopentaose Ii
Length = 478
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 7 TYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEERKWKKVINGT 66
T+W P+ + + + + L +P + N + ++E I GQRI + + + +
Sbjct: 380 TFWRPDADDAAPAITLTLPQPTTINAIVIEEAIEHGQRIEHLRVTGALPDGTERVLGQAG 439
Query: 67 TVGYQRLLQFPTVKSQQLRFVIDKSRAEPLIS 98
TVGY+R+L+F V+ + +D SR P+IS
Sbjct: 440 TVGYRRILRFDDVEVSSVTLHVDGSRLAPMIS 471
>pdb|3UES|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
pdb|3UES|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
Length = 478
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 7 TYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEERKWKKVINGT 66
T+W P+ + + + + L +P + N + ++E I GQRI + + + +
Sbjct: 380 TFWRPDADDAAPAITLTLPQPTTINAIVIEEAIEHGQRIEHLRVTGALPDGTERVLGQAG 439
Query: 67 TVGYQRLLQFPTVKSQQLRFVIDKSRAEPLIS 98
TVGY+R+L+F V+ + +D SR P+IS
Sbjct: 440 TVGYRRILRFDDVEVSSVTLHVDGSRLAPMIS 471
>pdb|3MO4|A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Atcc 15697
pdb|3MO4|B Chain B, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Atcc 15697
Length = 480
Score = 52.8 bits (125), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 7 TYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEERKWKKVINGT 66
T+W P+ + + + + L +P + N + ++E I GQRI + + + +
Sbjct: 382 TFWRPDADDAAPAITLTLPQPTTINAIVIEEAIEHGQRIEHLRVTGALPDGTERVLGQAG 441
Query: 67 TVGYQRLLQFPTVKSQQLRFVIDKSRAEPLIS 98
TVGY+R+L+F V+ + +D SR P IS
Sbjct: 442 TVGYRRILRFDDVEVSSVTLHVDGSRLAPXIS 473
>pdb|3EYP|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
pdb|3EYP|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
Length = 469
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 7 TYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEERKWKKVINGT 66
TY+A ++ ++ L + + F+ L ++E I +G R +++ ++ + + W + T
Sbjct: 355 TYFAGKDGEVKADIIFTLPKTIEFDCLMIEEVIELGHRTTKWSVEYTVDGKNWITIPEAT 414
Query: 67 ---TVGYQRLLQFPTVKSQQLRFVIDKSRAEPLISHLGIY 103
+G++ +++ VK++Q+R I +A P I G+Y
Sbjct: 415 DKQAIGHKWIVRLAPVKAKQVRLRIQDGKACPAIHTFGVY 454
>pdb|3GZA|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.60 A Resolution
pdb|3GZA|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.60 A Resolution
Length = 443
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 19 TLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEERKWKKVINGTTVGYQRLLQFPT 78
+L + L + S N +QE I G+RI ++ ++ KW+ V G +VG++R+ +F
Sbjct: 357 SLTLKLGKEQSVNYCIIQENIKNGERIRQYQIEA-KVNGKWQTVCKGESVGHKRIEKFEP 415
Query: 79 VKSQQLRFVIDKSRAEPLISHLGIY 103
V++ LR + +S A P I + Y
Sbjct: 416 VEATALRLTVSESIALPDIINFSAY 440
>pdb|1ITW|A Chain A, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Isocitrate And Mn
pdb|1ITW|B Chain B, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Isocitrate And Mn
pdb|1ITW|C Chain C, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Isocitrate And Mn
pdb|1ITW|D Chain D, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Isocitrate And Mn
pdb|1J1W|A Chain A, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Nadp+
pdb|1J1W|B Chain B, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Nadp+
pdb|1J1W|C Chain C, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Nadp+
pdb|1J1W|D Chain D, Crystal Structure Of The Monomeric Isocitrate
Dehydrogenase In Complex With Nadp+
Length = 741
Score = 30.0 bits (66), Expect = 0.47, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 32 VLQVQEPIHMGQRISRFHLDILNEERKWKKVI-----NGTTVGYQRLLQFPTVKSQQL 84
+++V +PI GQ +S F+ D L + + K I NG Y R+ P K +++
Sbjct: 258 MMKVSDPIMFGQIVSEFYKDALTKHAEVLKQIGFDVNNGIGDLYARIKTLPEAKQKEI 315
>pdb|2IKF|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp
pdb|2IKF|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp
pdb|2NOM|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Dutp
pdb|2NOM|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Dutp
pdb|2Q0C|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Ctp
pdb|2Q0C|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Ctp
pdb|2Q0D|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Atp
pdb|2Q0D|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Atp
pdb|2Q0E|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Gtp
pdb|2Q0E|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Gtp
pdb|2Q0F|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp And Ump
pdb|2Q0F|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Utp And Ump
pdb|2Q0G|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Upu
pdb|2Q0G|B Chain B, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei
With Bound Upu
Length = 353
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
Query: 57 RKWKK-------VING--TTVGYQRLLQFPTVKSQQLRFV----IDKSRAEPLISHL 100
++W K VI G T+ G+ ++ + ++ L+FV ID SR EPL HL
Sbjct: 189 KRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHL 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,702,326
Number of Sequences: 62578
Number of extensions: 126101
Number of successful extensions: 252
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 9
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)