Query 032423
Match_columns 141
No_of_seqs 105 out of 429
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 13:54:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00057 FA58C Substituted upda 99.7 9.1E-17 2E-21 116.5 14.1 100 2-103 30-142 (143)
2 PF00754 F5_F8_type_C: F5/8 ty 99.6 7.4E-14 1.6E-18 98.0 11.2 99 1-100 21-129 (129)
3 smart00231 FA58C Coagulation f 99.2 1.1E-09 2.4E-14 80.2 13.7 96 6-104 33-138 (139)
4 COG3669 Alpha-L-fucosidase [Ca 98.6 7.7E-09 1.7E-13 88.7 -1.0 98 2-103 333-430 (430)
5 smart00607 FTP eel-Fucolectin 98.2 2.6E-05 5.7E-10 59.1 10.1 107 1-107 30-149 (151)
6 PF07738 Sad1_UNC: Sad1 / UNC- 98.0 7.7E-05 1.7E-09 54.6 9.0 98 5-105 21-134 (135)
7 cd08366 APC10 APC10 subunit of 97.7 0.0016 3.5E-08 48.8 11.9 102 1-103 24-138 (139)
8 cd08159 APC10-like APC10-like 97.6 0.0013 2.9E-08 48.8 10.9 100 1-103 20-129 (129)
9 KOG3516 Neurexin IV [Signal tr 97.2 0.00079 1.7E-08 64.5 6.2 99 7-106 64-174 (1306)
10 cd08667 APC10-ZZEF1 APC10/DOC1 97.1 0.0098 2.1E-07 44.3 10.1 101 1-103 20-130 (131)
11 PF03256 APC10: Anaphase-promo 96.9 0.033 7.2E-07 43.9 12.5 106 2-108 53-170 (193)
12 cd08365 APC10-like1 APC10-like 96.9 0.038 8.2E-07 41.1 11.6 37 1-37 21-57 (131)
13 KOG3437 Anaphase-promoting com 96.7 0.032 7E-07 43.6 10.5 104 1-105 43-158 (184)
14 cd08665 APC10-CUL7 APC10-like 96.7 0.029 6.2E-07 41.8 9.7 99 1-103 20-130 (131)
15 cd08666 APC10-HECTD3 APC10-lik 96.1 0.012 2.6E-07 44.0 5.0 37 1-37 25-61 (134)
16 cd08664 APC10-HERC2 APC10-like 95.9 0.1 2.2E-06 39.8 9.3 96 1-101 44-150 (152)
17 PF13163 DUF3999: Protein of u 95.8 0.058 1.3E-06 47.0 8.5 84 21-106 117-212 (429)
18 PF00055 Laminin_N: Laminin N- 95.1 0.096 2.1E-06 42.4 6.9 58 2-62 62-127 (237)
19 KOG4276 Predicted hormone rece 93.8 0.73 1.6E-05 33.1 8.3 51 13-64 3-55 (113)
20 smart00136 LamNT Laminin N-ter 92.9 0.39 8.4E-06 39.0 6.5 54 5-62 72-129 (238)
21 PF13163 DUF3999: Protein of u 90.3 4.9 0.00011 35.1 10.9 73 16-90 234-315 (429)
22 COG5156 DOC1 Anaphase-promotin 90.2 0.16 3.5E-06 39.3 1.5 97 1-105 47-163 (189)
23 KOG1094 Discoidin domain recep 90.0 0.7 1.5E-05 42.7 5.6 99 6-106 64-180 (807)
24 KOG2687 Spindle pole body prot 89.6 5.7 0.00012 34.9 10.7 101 3-106 291-410 (414)
25 PF06588 Muskelin_N: Muskelin 89.6 0.63 1.4E-05 37.0 4.4 92 3-94 30-133 (199)
26 PF07461 NADase_NGA: Nicotine 89.6 0.1 2.2E-06 44.9 0.0 103 1-105 73-195 (446)
27 KOG4350 Uncharacterized conser 89.4 0.47 1E-05 42.0 3.9 100 1-103 303-415 (620)
28 PF03561 Allantoicase: Allanto 87.5 11 0.00023 28.7 10.7 84 17-103 51-151 (152)
29 KOG4350 Uncharacterized conser 83.5 6.7 0.00014 35.0 7.8 71 16-89 474-548 (620)
30 TIGR02961 allantoicase allanto 79.6 38 0.00082 28.9 11.2 88 17-107 61-161 (322)
31 TIGR02961 allantoicase allanto 79.5 24 0.00052 30.1 9.6 84 17-103 221-320 (322)
32 PRK13257 allantoicase; Provisi 77.7 25 0.00054 30.2 9.2 86 17-105 232-333 (336)
33 PRK13257 allantoicase; Provisi 77.7 45 0.00097 28.6 10.8 87 17-106 76-172 (336)
34 PRK13797 putative bifunctional 76.3 27 0.00059 31.6 9.5 88 17-107 233-334 (516)
35 PRK13797 putative bifunctional 71.9 41 0.00089 30.5 9.5 86 17-105 70-172 (516)
36 TIGR00369 unchar_dom_1 unchara 54.7 53 0.0011 22.6 5.8 48 18-67 65-113 (117)
37 KOG0994 Extracellular matrix g 52.1 25 0.00053 35.3 4.7 53 5-61 108-162 (1758)
38 PF13028 DUF3889: Protein of u 49.5 91 0.002 22.0 6.3 42 40-90 55-96 (97)
39 PF12571 DUF3751: Phage tail-c 48.8 48 0.0011 24.8 5.1 64 74-137 64-133 (159)
40 PHA00664 hypothetical protein 48.0 1.2E+02 0.0026 22.9 8.9 83 21-103 24-122 (140)
41 KOG1396 Uncharacterized conser 43.9 4.2 9.1E-05 36.6 -1.6 87 17-103 167-261 (530)
42 KOG4145 Allantoicase [Nucleoti 43.5 59 0.0013 27.4 5.1 89 5-93 230-331 (340)
43 cd03443 PaaI_thioesterase PaaI 40.9 1E+02 0.0023 20.2 5.6 48 17-66 60-108 (113)
44 PF15538 Toxin_61: Putative to 36.4 32 0.00069 26.4 2.4 83 22-111 49-144 (157)
45 KOG3512 Netrin, axonal chemotr 36.1 87 0.0019 28.5 5.3 55 5-62 108-168 (592)
46 PF00577 Usher: Outer membrane 33.4 1.2E+02 0.0027 26.8 5.9 57 48-107 99-157 (552)
47 PF01404 Ephrin_lbd: Ephrin re 32.7 1.1E+02 0.0025 23.7 5.0 36 70-105 141-176 (178)
48 KOG2437 Muskelin [Signal trans 31.8 78 0.0017 29.2 4.4 90 4-94 34-133 (723)
49 cd06407 PB1_NLP A PB1 domain i 29.0 64 0.0014 21.7 2.7 20 46-65 39-58 (82)
50 PF03080 DUF239: Domain of unk 26.6 3.1E+02 0.0068 21.8 6.7 61 6-71 59-131 (229)
51 COG4266 Alc Allantoicase [Nucl 25.8 3.3E+02 0.0071 23.2 6.7 89 17-108 76-174 (334)
52 cd06405 PB1_Mekk2_3 The PB1 do 22.1 56 0.0012 22.3 1.3 27 68-94 8-35 (79)
53 PF00576 Transthyretin: HIUase 21.9 2.4E+02 0.0053 20.1 4.7 44 43-89 19-66 (112)
54 PF01834 XRCC1_N: XRCC1 N term 20.7 56 0.0012 25.0 1.2 91 6-103 31-152 (153)
55 PF14688 DUF4461: Domain of un 20.6 64 0.0014 27.2 1.7 43 68-110 171-213 (313)
56 KOG1094 Discoidin domain recep 20.4 6.3E+02 0.014 24.1 8.0 124 9-134 252-388 (807)
No 1
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=99.74 E-value=9.1e-17 Score=116.51 Aligned_cols=100 Identities=14% Similarity=0.258 Sum_probs=86.9
Q ss_pred CCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccC--CCceEEEEEEEEEeCCC-cEEEEEec----eeee-----
Q 032423 2 KEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIH--MGQRISRFHLDILNEER-KWKKVING----TTVG----- 69 (141)
Q Consensus 2 Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~--~gqrI~~f~Ie~~~~dG-~W~~ia~G----ttIG----- 69 (141)
|+|..|+|.+..++..+||+|||+++..|+.|+|+.... .++++++|+|++.+ || .|+.+.+. ...|
T Consensus 30 dg~~~t~W~~~~~~~~~wi~vDL~~~~~i~~v~i~~~~~~~~~~~~~~~~i~~s~-dg~~W~~~~~~~~~~~~~~~~~~~ 108 (143)
T cd00057 30 RLNSDNAWTPAVNDPPQWLQVDLGKTRRVTGIQTQGRKGGGSSEWVTSYKVQYSL-DGETWTTYKDKGEEKVFTGNSDGS 108 (143)
T ss_pred ecCCCCcccCCCCCCCceEEEECCCCEEEEEEEEccCCCCCccCeeEEEEEEEEC-CCCCEeEEEcCCcEEEEeCCcCCC
Confidence 889999999987677899999999999999999998765 58899999999999 88 69998862 1222
Q ss_pred eEEEEEcC-CeeeeEEEEEEEccCCCceecEEEEE
Q 032423 70 YQRLLQFP-TVKSQQLRFVIDKSRAEPLISHLGIY 103 (141)
Q Consensus 70 ~kri~~f~-~Vta~~vRl~i~~s~~~P~I~ef~vY 103 (141)
..+.+.|+ |+.|++|||.+++..+.++| ||+||
T Consensus 109 ~~~~~~l~~pv~aRyvRl~~~~~~~~~~l-e~evy 142 (143)
T cd00057 109 TPVTNDFPPPIVARYIRILPTTWNGNISL-RLELY 142 (143)
T ss_pred eEEEEeCCCCEEEEEEEEEEeecCCccEE-EEEEc
Confidence 45678888 69999999999988888999 99998
No 2
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=99.55 E-value=7.4e-14 Score=97.99 Aligned_cols=99 Identities=19% Similarity=0.318 Sum_probs=80.4
Q ss_pred CCCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccCCCc-eEEEEEEEEEeCCC-cEEEEEec---e--eeeeEEE
Q 032423 1 MKEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQ-RISRFHLDILNEER-KWKKVING---T--TVGYQRL 73 (141)
Q Consensus 1 ~Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~~gq-rI~~f~Ie~~~~dG-~W~~ia~G---t--tIG~kri 73 (141)
+||+..|+|.+......+||+|||+++..|+.|.|.-.-..++ ++.+|+|++.. || .|+++.++ . .-+...+
T Consensus 21 ~Dg~~~t~W~~~~~~~~~~i~idl~~~~~i~~i~i~~~~~~~~~~~~~~~i~~s~-dg~~w~~~~~~~~~~~~~~~~~~~ 99 (129)
T PF00754_consen 21 FDGDPSTAWCSNWDDSPQWIQIDLGKPYTISGISIQFRNDGNNGRPKSFKIEYSN-DGSNWTTVASQFYGNTNSGSVVTI 99 (129)
T ss_dssp GSSSTTSSEEESSSSSTEEEEEEEEEEEEEEEEEEEEESSTTTEEEEEEEEEEES-SSSSEEEEEETEEEESSSSSSEEE
T ss_pred EeCCCCCEEECCCCCCCceEEEEeeeeEecceeeecccccccceeeeeeeeeeec-ccccccccccceeeccCCCceEEE
Confidence 6999999999986777899999999999999999998766666 99999999998 77 89999984 1 2334444
Q ss_pred EEcCCeeeeEEEEEEEc--cC-CCceecEE
Q 032423 74 LQFPTVKSQQLRFVIDK--SR-AEPLISHL 100 (141)
Q Consensus 74 ~~f~~Vta~~vRl~i~~--s~-~~P~I~ef 100 (141)
.-++|+++++|||.+++ .. ...+|+||
T Consensus 100 ~~~~~~~~ryiri~~~~~~~~~~~~~i~Ei 129 (129)
T PF00754_consen 100 SFFPPVKARYIRITVTSWNGNNGWVSIAEI 129 (129)
T ss_dssp EEEEEEEEEEEEEEEEEEESCSSEEEEEEE
T ss_pred EeCCCeEEEEEEEEEEEECCCCceEEEEeC
Confidence 55569999999999974 22 34677775
No 3
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=99.19 E-value=1.1e-09 Score=80.20 Aligned_cols=96 Identities=13% Similarity=0.217 Sum_probs=73.4
Q ss_pred ceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCC-cEEEEEe-------cee-eeeEEEEEc
Q 032423 6 YTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEER-KWKKVIN-------GTT-VGYQRLLQF 76 (141)
Q Consensus 6 ~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG-~W~~ia~-------Gtt-IG~kri~~f 76 (141)
.++|.+...+..+||+|||+++..|..|.++-....++-+..|.+ +.. || .|..+.+ |-+ -+......|
T Consensus 33 ~~~W~~~~~~~~~wlqvDLg~~~~v~~i~~qg~~~~~~~~~~~~~-~s~-dg~~W~~~~~~~~~~f~gn~d~~~~~~~~~ 110 (139)
T smart00231 33 DGAWCPAKNSLPPWIQVDLGRTRTVTGVITGGRHGDGDGVTYKLL-YSD-DGNNWTTYKDGNSKVFPGNSDAGTVVVNEF 110 (139)
T ss_pred CCcccCCCCCCCceeEeeccCcEEEEEEEecccCCCCcEEEEEEE-EEe-CCCCEeEEeCCCeEEEeCccCCCceEEEec
Confidence 689999887778999999999999999999853234567888888 887 77 7998753 222 122344678
Q ss_pred C-CeeeeEEEEEEEccCCCceecEEEEEe
Q 032423 77 P-TVKSQQLRFVIDKSRAEPLISHLGIYM 104 (141)
Q Consensus 77 ~-~Vta~~vRl~i~~s~~~P~I~ef~vY~ 104 (141)
+ ||.|++|||..+.-...+. .+|+||-
T Consensus 111 ~~~v~ARyvRi~p~~~~~~~~-~r~ElyG 138 (139)
T smart00231 111 PPPIVARYIRILPTGWNGNII-LRVELLG 138 (139)
T ss_pred CCCEEEEEEEEEEeEcCCCcE-EEEEEEc
Confidence 8 7999999999986665555 4799983
No 4
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=7.7e-09 Score=88.73 Aligned_cols=98 Identities=26% Similarity=0.464 Sum_probs=89.5
Q ss_pred CCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCCcEEEEEeceeeeeEEEEEcCCeee
Q 032423 2 KEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEERKWKKVINGTTVGYQRLLQFPTVKS 81 (141)
Q Consensus 2 Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG~W~~ia~GttIG~kri~~f~~Vta 81 (141)
++..+++|.+.+.....-+++.|..|.+|+....+|++..||||+.|.++.+. + +.+.++.+||+++++++..+++
T Consensus 333 t~~~Eg~~~~~~a~~~~~~d~~~t~p~~~~~~l~~~w~~~g~~i~~~~~t~~~-~---~rvg~~~~i~~~~~~~~~~~~a 408 (430)
T COG3669 333 TDGVEGSFTASDADPFIQLDLRFTTPKTFDVALLMEWLTLGQRIAAYSVTVEQ-D---QRVGSGHTIGYKRLLHGAVATA 408 (430)
T ss_pred CCCcccccccccCCccchhhcccCCcccccHHHhhhhccccceeeeeeehhhh-h---hhhhhccccceeecccccceec
Confidence 45667788887877777899999999999999999999999999999999987 6 8899999999999999999999
Q ss_pred eEEEEEEEccCCCceecEEEEE
Q 032423 82 QQLRFVIDKSRAEPLISHLGIY 103 (141)
Q Consensus 82 ~~vRl~i~~s~~~P~I~ef~vY 103 (141)
.++|+.++++...+.|+++++|
T Consensus 409 ~~~r~~~~s~~~~~~i~~~~l~ 430 (430)
T COG3669 409 PKLRLEIPSSAPALLIREPGLY 430 (430)
T ss_pred hhhhhcCccccchhhhcccccC
Confidence 9999999999888999999886
No 5
>smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
Probab=98.17 E-value=2.6e-05 Score=59.12 Aligned_cols=107 Identities=11% Similarity=0.113 Sum_probs=77.7
Q ss_pred CCCCcceEEecC-----CCCCCeEEEEEcCCCeEEeEEEEEccc-CCCceEEEEEEEEEeC---CCcEEEEE-eceee--
Q 032423 1 MKEDIYTYWAPE-----ENHSDWTLLINLQEPVSFNVLQVQEPI-HMGQRISRFHLDILNE---ERKWKKVI-NGTTV-- 68 (141)
Q Consensus 1 ~Dg~~~T~Wa~~-----~~~~~~~leldL~~~~~fn~V~l~E~i-~~gqrI~~f~Ie~~~~---dG~W~~ia-~GttI-- 68 (141)
+||+.++.|... ..+..||..+||++...|+.|.|.-.- ..++|+..|+|.+-++ ++...... .+.++
T Consensus 30 VDGn~~~~~~~~scthT~~e~~PWW~VDL~~~~~V~~V~I~NR~Dcc~~rl~~~eI~IG~s~~~~~~~n~~c~~~~~~~~ 109 (151)
T smart00607 30 IDGNRASFTPEGSCSHTEKRSNPWWRVDLLQYMTIHSVTITNRGDCCGERITGARILIGNSLENGGINNPNCSTGGLMAG 109 (151)
T ss_pred CcCCccCCCCCCccccCCCCCCCeEEEeCCCeEEeeEEEEecCCCCCCccccceEEEECCcccccCCcCcccCCCceeCC
Confidence 699999888642 345689999999999999999998532 2378999999998752 12222221 22333
Q ss_pred eeEEEEEcC-CeeeeEEEEEEEccCCCceecEEEEEeecc
Q 032423 69 GYQRLLQFP-TVKSQQLRFVIDKSRAEPLISHLGIYMDKF 107 (141)
Q Consensus 69 G~kri~~f~-~Vta~~vRl~i~~s~~~P~I~ef~vY~~p~ 107 (141)
|...++.-+ ++.+|+|++.+........|.||+||-.|.
T Consensus 110 ~~~~~~~c~~~~~GRYV~i~Lpg~~~~L~LCEVeV~~~~~ 149 (151)
T smart00607 110 GETKTFCCPPPMIGRYVTVYLPKPNESLILCEVEVNALFP 149 (151)
T ss_pred CceEEEeCCCCCeeEEEEEEecCCCccEEEeEEEEcccCC
Confidence 333445455 599999999999876789999999998764
No 6
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=97.96 E-value=7.7e-05 Score=54.57 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=66.5
Q ss_pred cceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccC----CCceEEEEEEEEEeCCCc---EEEEEece-eeeeEEEEEc
Q 032423 5 IYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIH----MGQRISRFHLDILNEERK---WKKVINGT-TVGYQRLLQF 76 (141)
Q Consensus 5 ~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~----~gqrI~~f~Ie~~~~dG~---W~~ia~Gt-tIG~kri~~f 76 (141)
+...|+.++ +.+||.|.|.++..+..|.|.-.-. .....+.|+|.... ++. |..|.+.+ ....+.+-.|
T Consensus 21 ~g~Cw~~~g--~~~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~-~~~~~~~~~LG~f~y~~~~~~~QtF 97 (135)
T PF07738_consen 21 PGPCWAFEG--SKGWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSV-DYPDEEWVLLGEFEYDSDGNSIQTF 97 (135)
T ss_dssp TT-SEEEET--T-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEES-SSSTS--EEEEEEE--TTS-SEEEE
T ss_pred CCccCccCC--CceEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEe-cccccceeeeceEEEcCCcCccEee
Confidence 456788754 3689999999999999999994433 67889999999998 542 99999887 3444555566
Q ss_pred C--Ce---eeeEEEEEEEccCCCc---eecEEEEEee
Q 032423 77 P--TV---KSQQLRFVIDKSRAEP---LISHLGIYMD 105 (141)
Q Consensus 77 ~--~V---ta~~vRl~i~~s~~~P---~I~ef~vY~~ 105 (141)
+ .. ..+.|+|+|++.-|.+ .|+.|+||-.
T Consensus 98 ~l~~~~~~~~~~i~l~i~sN~G~~~ytclyr~rVhG~ 134 (135)
T PF07738_consen 98 PLPRPPRQPVRYIKLRILSNHGNEEYTCLYRFRVHGE 134 (135)
T ss_dssp E-SS--S--EEEEEEEE--BSS-SSEEEE-EEEEEEE
T ss_pred eeccCchhcCcEEEEEEEcCCCCCceEEEEEEEEEee
Confidence 5 33 4799999999998865 9999999853
No 7
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=97.66 E-value=0.0016 Score=48.82 Aligned_cols=102 Identities=11% Similarity=0.208 Sum_probs=72.5
Q ss_pred CCCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEccc--CCCceEEEEEEEEEeCCCcEEEEEe---ceeeeeEEEEE
Q 032423 1 MKEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPI--HMGQRISRFHLDILNEERKWKKVIN---GTTVGYQRLLQ 75 (141)
Q Consensus 1 ~Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i--~~gqrI~~f~Ie~~~~dG~W~~ia~---GttIG~kri~~ 75 (141)
+|+|.+|||.++.. .+-||+|.|.+.+.+..|.|.=+. .....-.+-.|.+-...+..+++.. ....|.-.+.-
T Consensus 24 ~D~~~~TyWQSDg~-qPH~I~i~f~k~~~i~~l~i~vd~~~DeSYtP~~I~v~~G~~~~dl~e~~~v~l~~p~Gwv~i~l 102 (139)
T cd08366 24 RDDSLDTYWQSDGP-QPHLINIQFSKKTDISAVALYLDYKLDESYTPSKISIRAGTSPHDLQEVRTVELEEPNGWVHIPL 102 (139)
T ss_pred cCCCCCccCCCCCC-CCEEEEEEecCCcEEEEEEEEEccCCCCCCCCEEEEEEEECCcCchhheEEEEcCCCCEEEEEEc
Confidence 59999999999655 588999999999999999888544 3445555556655441233444433 33467766522
Q ss_pred c-----CCeeeeEEEEEEEccCC---CceecEEEEE
Q 032423 76 F-----PTVKSQQLRFVIDKSRA---EPLISHLGIY 103 (141)
Q Consensus 76 f-----~~Vta~~vRl~i~~s~~---~P~I~ef~vY 103 (141)
- .|+.+..|++.|+++.. +..|+.+.+|
T Consensus 103 ~~~~~~~~~~~~~iqi~I~~nh~nG~DthiR~iki~ 138 (139)
T cd08366 103 EDNRDGKPLRTFFLQIAILSNHQNGRDTHIRQIKVY 138 (139)
T ss_pred cCCCCCCeeEEEEEEEEEecccCCCCCcceeeeEec
Confidence 2 25899999999988864 5788888887
No 8
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=97.62 E-value=0.0013 Score=48.79 Aligned_cols=100 Identities=16% Similarity=0.231 Sum_probs=65.3
Q ss_pred CCCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCC------cEEEEEeceeeeeEEEE
Q 032423 1 MKEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEER------KWKKVINGTTVGYQRLL 74 (141)
Q Consensus 1 ~Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG------~W~~ia~GttIG~kri~ 74 (141)
.|||.+|||.+++.+..-|+.|.|.+.+.+..+.|.=+. ..+.-.--+|.+.. +. +-.++-=+...|.-.|
T Consensus 20 ~D~~~~tyWQSdG~qphh~i~l~f~k~v~i~~l~i~~~~-~DeSYtP~~I~V~~-G~~~~dL~e~~~v~l~~p~Gwv~i- 96 (129)
T cd08159 20 TDGNYDTYWQSDGSQGSHWIRLFMKKDVLIRVLAIFVDM-ADSSYMPSLVVVYG-GHSPSDLRELKDVNIRPSNGWVAL- 96 (129)
T ss_pred cCCCCCccCCCCCCCCCEEEEEEEcCCcEEEEEEEEecC-CCCCcCCcEEEEEe-cCCHHHhheeEEEEecCCCceEEE-
Confidence 599999999998876667999999999999999998443 33222122233332 11 1222222334555443
Q ss_pred EcC-CeeeeEEEEEEEccCC---CceecEEEEE
Q 032423 75 QFP-TVKSQQLRFVIDKSRA---EPLISHLGIY 103 (141)
Q Consensus 75 ~f~-~Vta~~vRl~i~~s~~---~P~I~ef~vY 103 (141)
.++ +..+..|+|.|+++.. +-.|+.+.+|
T Consensus 97 ~~~~~~~~~~iqI~I~~nhqnG~DthiRgikI~ 129 (129)
T cd08159 97 LEDDTLKCPYIEIRIKRCRSDGIDTRIRGLRLL 129 (129)
T ss_pred EcCCcEEEEEEEEEEHHhccCCccceeeEEEeC
Confidence 334 7889999999987643 4788888776
No 9
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=97.18 E-value=0.00079 Score=64.52 Aligned_cols=99 Identities=12% Similarity=0.221 Sum_probs=75.2
Q ss_pred eEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCC-cEEEEEecee----eeeE-----EEEEc
Q 032423 7 TYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEER-KWKKVINGTT----VGYQ-----RLLQF 76 (141)
Q Consensus 7 T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG-~W~~ia~Gtt----IG~k-----ri~~f 76 (141)
.-|++..+...+|+++||+++..+..|..++......-|..|.+.+.+ .| .|+++.+++. +|.- -..+|
T Consensus 64 ~gwsp~~~~~~~wlq~dLg~~~ev~aVatqg~~~Sddwvt~y~l~~sD-~g~~w~~y~~~~~~wtf~Gn~n~~sVv~~~l 142 (1306)
T KOG3516|consen 64 SGWSPKISNYNQWLQLDLGKRMEVTAVATQGRYGSDDWVTSYILQYSD-PGRNWKTYSQEGSSWTFVGNVNADSVVYHEL 142 (1306)
T ss_pred cccccccCcccceeeeccCCceeeEEEeeccccCcchHHHHHHHhccC-CccceEEEEeCCCccccccccccceEEeccc
Confidence 469999999999999999999999999999987777779999999999 77 8999988432 2221 12445
Q ss_pred C-CeeeeEEEEEEEccCC-CceecEEEEEeec
Q 032423 77 P-TVKSQQLRFVIDKSRA-EPLISHLGIYMDK 106 (141)
Q Consensus 77 ~-~Vta~~vRl~i~~s~~-~P~I~ef~vY~~p 106 (141)
. |++|+.||+..++=-. .-.=-.++||..|
T Consensus 143 ~~~~~ar~vr~~pl~wnp~grig~rVevygc~ 174 (1306)
T KOG3516|consen 143 EPPIEARFVRILPLDWNPKGRIGMRVEVYGCS 174 (1306)
T ss_pred cCcccceEEeeeeeeeCCCCcceeEEEEEecc
Confidence 5 8999999999654321 2333456677543
No 10
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=97.09 E-value=0.0098 Score=44.29 Aligned_cols=101 Identities=15% Similarity=0.256 Sum_probs=61.6
Q ss_pred CCCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCCc---EEEEEe---c-eeeeeEEE
Q 032423 1 MKEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEERK---WKKVIN---G-TTVGYQRL 73 (141)
Q Consensus 1 ~Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG~---W~~ia~---G-ttIG~kri 73 (141)
+|||.+|||++++.+..-||.|.|.+.+.+..|.|.=+ +..+--.-=+|.+.. +.. =+++.. . +..|+-.+
T Consensus 20 ~D~~~~TYWQSDG~q~pH~I~i~f~~~v~i~~l~i~v~-~~DeSYtPs~I~I~~-G~~~~dL~e~~~v~l~~~~~Gwv~l 97 (131)
T cd08667 20 TDGETSTYWQSDGSARSHWIRLKMKPDVVLRHLSIAVA-ATDQSYMPQQVTVSV-GRSASSLQEVRDVHIPSNVTGYVTL 97 (131)
T ss_pred hcCCCCccCccCCCCCCeEEEEEecCCeEEEEEEEEEc-CCCCCcCCcEEEEEe-cCCHhhheeeEEEEcCCCCceeEEE
Confidence 59999999999876556799999999999999888744 232211111222222 111 111111 1 12244333
Q ss_pred EEcCCeeeeEEEEEEEccCC---CceecEEEEE
Q 032423 74 LQFPTVKSQQLRFVIDKSRA---EPLISHLGIY 103 (141)
Q Consensus 74 ~~f~~Vta~~vRl~i~~s~~---~P~I~ef~vY 103 (141)
..=.+..+-.|+|.|+++.. +-.|+.+.+|
T Consensus 98 ~~~~~~~~~~iqI~I~~nhqnG~DthIRgiki~ 130 (131)
T cd08667 98 LENANISYLVVQINIKRCHSDGCDTRIHGLKTI 130 (131)
T ss_pred EcCCceEEEEEEEEeHHhccCCccceeeEEEEc
Confidence 22236788889999987643 4688887776
No 11
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=96.94 E-value=0.033 Score=43.87 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=67.1
Q ss_pred CCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEccc--CCCceEEEEEEEEEeCCCcEEEEEe---ceeeeeEEEEEc
Q 032423 2 KEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPI--HMGQRISRFHLDILNEERKWKKVIN---GTTVGYQRLLQF 76 (141)
Q Consensus 2 Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i--~~gqrI~~f~Ie~~~~dG~W~~ia~---GttIG~kri~~f 76 (141)
|+|.+|||.++.. ..=||+|.|.+.+.+..|.|.=+. ..+....+-.|.+-...+..+++.. ....|.-.|.-.
T Consensus 53 D~~~~TyWQSDG~-qpH~I~i~f~k~v~I~~l~iyvd~~~DeSYtPs~I~V~aG~~~~dl~e~~~v~l~~p~GWv~i~l~ 131 (193)
T PF03256_consen 53 DGSTETYWQSDGS-QPHWITIQFHKRVIISSLSIYVDYKQDESYTPSKISVRAGNSPHDLQEVKTVELEEPNGWVHIPLL 131 (193)
T ss_dssp SS-TT--EE--SS-SSEEEEEEEEEEEEE-EEEEEEEHHHHGGGSEEEEEEEEESSTTT-EEEEEEEECC-EEEEEEE-B
T ss_pred CCChhHhhccCCC-CCEEEEEEEcCCcEEEEEEEEEccCcCCCCCceEEEEEEeCCcCceEEEEEEEecCCCccEEEEeC
Confidence 9999999999655 467999999999999999997432 3355667777777662245655543 224566554221
Q ss_pred ----CCeeeeEEEEEEEccCC---CceecEEEEEeeccc
Q 032423 77 ----PTVKSQQLRFVIDKSRA---EPLISHLGIYMDKFS 108 (141)
Q Consensus 77 ----~~Vta~~vRl~i~~s~~---~P~I~ef~vY~~p~~ 108 (141)
.++.+..|+|.|+.+.. +..|+.+.||-.+..
T Consensus 132 ~~~~~~~r~~~iqI~I~~nhq~G~DthiR~iki~gp~~~ 170 (193)
T PF03256_consen 132 DNRGNPLRCFFIQIAILSNHQNGKDTHIRGIKIYGPRPS 170 (193)
T ss_dssp STTTSBEEEEEEEEEEEEECCC-SS-EESEEEEEEE---
T ss_pred CCCCCcEEEEEEEEEEEecccCCCCCceeeEEEECCCCc
Confidence 26888899999987753 589999999986554
No 12
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=96.86 E-value=0.038 Score=41.15 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=32.9
Q ss_pred CCCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEc
Q 032423 1 MKEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQE 37 (141)
Q Consensus 1 ~Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E 37 (141)
.|||.+|||++++.+..-||.|.|.+.+.+..+.|.=
T Consensus 21 ~D~~~~tyWQSDG~q~pH~I~i~f~k~v~i~~l~l~v 57 (131)
T cd08365 21 TDGNTSTYWQSDGSQGSHWIRLKMKPDVLVRHLSLAV 57 (131)
T ss_pred hcCCCCceEccCCCCCCEEEEEEEcCCcEEEEEEEEe
Confidence 5999999999987765679999999999999999984
No 13
>KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.032 Score=43.61 Aligned_cols=104 Identities=13% Similarity=0.248 Sum_probs=67.8
Q ss_pred CCCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCC--cEEEEEeceee---eeEEE--
Q 032423 1 MKEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEER--KWKKVINGTTV---GYQRL-- 73 (141)
Q Consensus 1 ~Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG--~W~~ia~GttI---G~kri-- 73 (141)
.|+|++|||++++. ....+.|.|.+.+.|..|+|.=+.......+.=+|-+...+| .|..+-.+.-+ |.-.+
T Consensus 43 ~Ddn~etyWqSdG~-~PH~i~I~F~K~~~I~~v~if~~f~~DeSYtPs~i~I~~G~g~~dl~~~~~~el~ep~GWv~lp~ 121 (184)
T KOG3437|consen 43 RDDNPETYWQSDGS-QPHLINIQFHKRVDIQYVVIFLDFKQDESYTPSKIKIRAGNGFNDLWEIQSVELVEPKGWVHLPV 121 (184)
T ss_pred hcCChhHheecCCC-CCeEEEEEEEeEEEEEEEEEEEEEecccccCceeEEEEecCChhheeeeeEEEEecCCceEEEee
Confidence 48999999999655 467899999999999999999655444333333333333233 46665555432 33221
Q ss_pred EE-cC-CeeeeEEEEEEEcc---CCCceecEEEEEee
Q 032423 74 LQ-FP-TVKSQQLRFVIDKS---RAEPLISHLGIYMD 105 (141)
Q Consensus 74 ~~-f~-~Vta~~vRl~i~~s---~~~P~I~ef~vY~~ 105 (141)
.. +. |...-.+++.|... ..+-.++.|.+|-.
T Consensus 122 ~d~~~~~lr~~~iqi~i~~NHq~GkDthvR~iri~~p 158 (184)
T KOG3437|consen 122 LDNDDKPLRCFMIQIAILSNHQNGKDTHVRHIRIYAP 158 (184)
T ss_pred ccCCCCceEEEEEEEEeecccccCccceeEEEEEecc
Confidence 11 22 67888888888654 23578999999853
No 14
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=96.67 E-value=0.029 Score=41.84 Aligned_cols=99 Identities=12% Similarity=0.182 Sum_probs=59.6
Q ss_pred CCCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCC--cE--EEEEe---ceeeeeEEE
Q 032423 1 MKEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEER--KW--KKVIN---GTTVGYQRL 73 (141)
Q Consensus 1 ~Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG--~W--~~ia~---GttIG~kri 73 (141)
.|||.+|||++++...+=||.|.|.+.+.+..+.|.=+ +..+--.--+|.+.. +. .. +++.. ..+.|+-.+
T Consensus 20 ~D~~~~tyWQSdG~q~pH~I~i~f~k~v~I~~l~i~v~-~~DeSYtPs~I~V~~-G~~~~dL~~e~~~V~~~~~~g~v~l 97 (131)
T cd08665 20 TDGNPKTYWESNGSTGSHYINIHMHRGVVIRQLYMLVA-SEDSSYMPARVVVLG-GDSPSCITTELNAVNVSPTASRVVL 97 (131)
T ss_pred hcCCCCceEccCCCCCCeEEEEEECCCcEEEEEEEEec-CCCCCcCCeeEEEEe-cCCHHHhhheeEEEEccCCcceEEE
Confidence 48999999999876668899999999999999999854 333322222333332 11 11 11111 112243222
Q ss_pred EEcCCeee--eEEEEEEEccCC---CceecEEEEE
Q 032423 74 LQFPTVKS--QQLRFVIDKSRA---EPLISHLGIY 103 (141)
Q Consensus 74 ~~f~~Vta--~~vRl~i~~s~~---~P~I~ef~vY 103 (141)
+..++. ..|.|.|+++.. .-.|+.+.+|
T Consensus 98 --l~~~~~~~~~iqI~I~~nhqnG~DthIRgikI~ 130 (131)
T cd08665 98 --LENMTRFWPIIQIRIKRCQQGGIDTRVRGLEIL 130 (131)
T ss_pred --cccCcccceEEEEEEhhhcccCccceeeEEEec
Confidence 333333 368888877653 4678877776
No 15
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=96.12 E-value=0.012 Score=44.00 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=32.8
Q ss_pred CCCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEc
Q 032423 1 MKEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQE 37 (141)
Q Consensus 1 ~Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E 37 (141)
.||+.+|||.+++....=||.|.|.+.+.+..+.|.=
T Consensus 25 ~D~~~~tyWQSdG~qgpH~I~l~f~~~v~i~~l~i~v 61 (134)
T cd08666 25 TDGDPDTYWESDGSQGQHWIRLHMKKGTIIKKLLLTV 61 (134)
T ss_pred ccCCCCccEecCCCCCCeEEEEEECCCcEeeEEEEEe
Confidence 5999999999976665789999999999999999873
No 16
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=95.93 E-value=0.1 Score=39.82 Aligned_cols=96 Identities=14% Similarity=0.174 Sum_probs=57.0
Q ss_pred CCCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCCcE---EEEEe---ceeeeeEEEE
Q 032423 1 MKEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEERKW---KKVIN---GTTVGYQRLL 74 (141)
Q Consensus 1 ~Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG~W---~~ia~---GttIG~kri~ 74 (141)
.|| .+|||++++....=||.|.|.+.+.+..+.|.=+ +....-.--+|.+.. +..- +++.. +.+.++ +.
T Consensus 44 ~D~-~~TYWQSdG~q~~HwI~l~~~~~v~I~~L~i~vd-~~DeSY~Ps~I~V~~-G~~~~~L~el~~V~i~~~~~~--v~ 118 (152)
T cd08664 44 IDG-SGSYWQSSGSQGKHWIRLELHPDVLIHSLKIIVD-PADSSYMPSLVVVSG-GDSLNSLKELKTINVNATDTL--VT 118 (152)
T ss_pred cCC-CCCeeccCCCCCceEEEEEECCCcEEEEEEEEec-CCCCCcCCceEEEEe-cCChhhhheeEEEEcCCCCce--EE
Confidence 488 9999999877666899999999999999999855 343322222344433 2211 22211 223332 22
Q ss_pred EcCCeeee--EEEEEEEccCC---CceecEEE
Q 032423 75 QFPTVKSQ--QLRFVIDKSRA---EPLISHLG 101 (141)
Q Consensus 75 ~f~~Vta~--~vRl~i~~s~~---~P~I~ef~ 101 (141)
-+.+++.. .|.|.|+++.. .-.|+.+.
T Consensus 119 Ll~~~~~~~~~IqI~I~~ch~~GiDt~Irglk 150 (152)
T cd08664 119 LLQDVKEYYRYIEIAIKQCRNNGIDCKIHGLN 150 (152)
T ss_pred eccCCCeeeEEEEEEhHhhhhCCCcceeeEEE
Confidence 22344444 78888887653 24555554
No 17
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=95.79 E-value=0.058 Score=47.01 Aligned_cols=84 Identities=13% Similarity=0.331 Sum_probs=63.4
Q ss_pred EEEcCCC-eEEeEEEEEcccCCCceEEEEEEEEEeCCC-cEEEE-Eec---------eeeeeEEEEEcCCeeeeEEEEEE
Q 032423 21 LINLQEP-VSFNVLQVQEPIHMGQRISRFHLDILNEER-KWKKV-ING---------TTVGYQRLLQFPTVKSQQLRFVI 88 (141)
Q Consensus 21 eldL~~~-~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG-~W~~i-a~G---------ttIG~kri~~f~~Vta~~vRl~i 88 (141)
-||+... ..++.+.|.=.-...+-+.+|.||.++ |. .|.+| .++ .++.+++ +.|+..+++|+||.+
T Consensus 117 Lld~s~~~~~l~~L~L~w~~~~~~~~~~v~VeaSd-Dl~~W~~l~~~~~l~~L~~~~~~l~~~~-I~L~~~~~rYLRl~~ 194 (429)
T PF13163_consen 117 LLDLSALKEPLDALRLDWPQSNFNWQARVSVEASD-DLQHWRPLAGDAQLMDLSNGGQRLVQDR-IELPGSNARYLRLTW 194 (429)
T ss_pred EEECcccccchhheEEEeecCCCCceEEEEEEEec-CcccceEccCCceEEEeccCCcceeeee-EccCCCCCceEEEEe
Confidence 4677665 477777777433455678899999999 87 79999 343 3455555 579999999999999
Q ss_pred EccCCCceecEEEEEeec
Q 032423 89 DKSRAEPLISHLGIYMDK 106 (141)
Q Consensus 89 ~~s~~~P~I~ef~vY~~p 106 (141)
.+....|.+..+.+....
T Consensus 195 ~~~~~~p~l~~~~l~~~~ 212 (429)
T PF13163_consen 195 NDPQSAPPLTSVSLESQQ 212 (429)
T ss_pred CCCCCCCcceeEEeeecc
Confidence 665778899998888754
No 18
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=95.06 E-value=0.096 Score=42.37 Aligned_cols=58 Identities=14% Similarity=0.257 Sum_probs=39.3
Q ss_pred CCCc---ceEEecC---CCC--CCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCCcEEEE
Q 032423 2 KEDI---YTYWAPE---ENH--SDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEERKWKKV 62 (141)
Q Consensus 2 Dg~~---~T~Wa~~---~~~--~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG~W~~i 62 (141)
|++. .|||+++ .+. ..-.|+|||++.-.|..|.|+=. +.|-....||=....|.|+++
T Consensus 62 D~~~~~~~TwWQS~~~~~g~~~~~VtitLdL~~~f~v~~v~l~F~---spRP~~miierS~D~gtW~p~ 127 (237)
T PF00055_consen 62 DSHNPNNSTWWQSETLQNGVQYENVTITLDLGKEFEVTYVILQFC---SPRPAAMIIERSSDFGTWQPW 127 (237)
T ss_dssp SSSCTTB---EEB--STTTTSTT-EEEEEEEEEEEEEEEEEEEES---S---SEEEEEEESSTTSEEEE
T ss_pred cccccccCceecCCccCCCCcCcceEEEEcccceEEEEEEEEEEc---CCCCCeEEEEEccCCCceeEe
Confidence 4444 7999998 554 46789999999999999999854 677788999977525799986
No 19
>KOG4276 consensus Predicted hormone receptor interactor [General function prediction only]
Probab=93.85 E-value=0.73 Score=33.10 Aligned_cols=51 Identities=10% Similarity=0.208 Sum_probs=39.7
Q ss_pred CCCCCeEEEEEcCCCeEEeEEEEEcccCCCce-EEEEEEEEEeCCC-cEEEEEe
Q 032423 13 ENHSDWTLLINLQEPVSFNVLQVQEPIHMGQR-ISRFHLDILNEER-KWKKVIN 64 (141)
Q Consensus 13 ~~~~~~~leldL~~~~~fn~V~l~E~i~~gqr-I~~f~Ie~~~~dG-~W~~ia~ 64 (141)
++++++|+.||||....--+-.++-.-.+|.- .+.+.++... || .|..+..
T Consensus 3 ~d~k~awf~iDLG~~vip~~y~lrh~rgygRsalRnW~fQgS~-DgktWt~l~v 55 (113)
T KOG4276|consen 3 DDDKNAWFAIDLGLEVIPTAYTLRHARGYGRSALRNWKFQGSK-DGKTWTDLRV 55 (113)
T ss_pred CCCcceeEEEecCceEeeeeeeeeecccccHHHhhheeeeccc-cCCcceeEEE
Confidence 56688999999999887777777755444432 6788999999 88 7999864
No 20
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=92.88 E-value=0.39 Score=38.97 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=42.2
Q ss_pred cceEEecCCC---CCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCC-cEEEE
Q 032423 5 IYTYWAPEEN---HSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEER-KWKKV 62 (141)
Q Consensus 5 ~~T~Wa~~~~---~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG-~W~~i 62 (141)
..|||.++.. ...-.|+|+|++.-.|-.|.|+=. +.|-...-+|-.+ +| .|++.
T Consensus 72 ~~TwWQS~~~~~~~~~VtitLdL~k~fevtyi~l~F~---s~RPa~~i~erSd-~G~tW~p~ 129 (238)
T smart00136 72 NPTWWQSEPLSNGPQNVNLTLDLGKEFHVTYVILKFC---SPRPSLWILERSD-FGKTWQPW 129 (238)
T ss_pred CCceecCCCcCCCCccEEEEEecCCEEEEEEEEEEec---CCCCceEEEeecC-CCCCCcEe
Confidence 3699999873 335789999999999999998844 4566777888777 66 78876
No 21
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=90.25 E-value=4.9 Score=35.12 Aligned_cols=73 Identities=15% Similarity=0.338 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeC-CCcEEEEEecee-----ee---eEEEEEcCCeeeeEEEE
Q 032423 16 SDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNE-ERKWKKVINGTT-----VG---YQRLLQFPTVKSQQLRF 86 (141)
Q Consensus 16 ~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~-dG~W~~ia~Gtt-----IG---~kri~~f~~Vta~~vRl 86 (141)
+...++++|+.+..++.|.|.=. ....+..-+|++... +..|+.++.|.- .| .+--+.|++...+++||
T Consensus 234 ~~~~~~~~lp~~~Pv~~l~I~l~--~~N~~~pv~i~~R~~~~~~W~~l~~~~lyrl~~~g~~~~s~~l~l~~~~~r~~Rl 311 (429)
T PF13163_consen 234 SAGEYVFRLPGALPVSRLRINLP--QPNTVRPVTIESRSDADQPWRPLASGVLYRLQQDGQEQSSPPLALPGTPVRYWRL 311 (429)
T ss_pred CCceEEEECCCCcceeEEEEecC--CCCcEEEEEEEEEcCCCCCCeEeccEEEEEeecCCCcccCCcEecCCCcceeEEE
Confidence 34689999999999999999833 225788999999762 347999988764 12 22246777899999999
Q ss_pred EEEc
Q 032423 87 VIDK 90 (141)
Q Consensus 87 ~i~~ 90 (141)
++..
T Consensus 312 ~v~n 315 (429)
T PF13163_consen 312 QVDN 315 (429)
T ss_pred EEec
Confidence 9986
No 22
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=90.20 E-value=0.16 Score=39.28 Aligned_cols=97 Identities=15% Similarity=0.355 Sum_probs=61.9
Q ss_pred CCCCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEE------cccCC-------C---ceEEEE-EEEEEeCCCcEEEEE
Q 032423 1 MKEDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQ------EPIHM-------G---QRISRF-HLDILNEERKWKKVI 63 (141)
Q Consensus 1 ~Dg~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~------E~i~~-------g---qrI~~f-~Ie~~~~dG~W~~ia 63 (141)
+|+|++|||++++++ .-.|.|.|.+-..|..|.|- |.... | +-++.+ .||+.+ -..|..+-
T Consensus 47 lddn~dtyWqsDg~q-PH~i~I~F~kr~~I~~v~lfls~t~DeSYtPs~i~v~aG~~~~D~r~~~~vev~e-p~Gwv~l~ 124 (189)
T COG5156 47 LDDNMDTYWQSDGVQ-PHSIQISFDKRRYIQSVQLFLSFTQDESYTPSKIGVRAGLTREDVREISSVEVVE-PEGWVTLS 124 (189)
T ss_pred hhcchhhhhccCCCC-CceEEEEEeEEEeeeeehhhhhhhcccccCcceeEEeccCChhhheeEEEEEEEc-CCceEEEE
Confidence 589999999997664 56899999999988888775 22111 1 224444 466666 55688764
Q ss_pred eceeeeeEEEEEcCCeeeeEEEEEEEcc---CCCceecEEEEEee
Q 032423 64 NGTTVGYQRLLQFPTVKSQQLRFVIDKS---RAEPLISHLGIYMD 105 (141)
Q Consensus 64 ~GttIG~kri~~f~~Vta~~vRl~i~~s---~~~P~I~ef~vY~~ 105 (141)
-+ .+|-. +=..-..+++.|... ..+-.++-+.+|-.
T Consensus 125 v~----d~~~d--~LL~c~~I~v~i~~NHq~GKDsHvR~ikiy~p 163 (189)
T COG5156 125 VA----DKRED--DLLKCIYILVVINSNHQEGKDSHVRHIKIYEP 163 (189)
T ss_pred ec----ccCcC--CceeEEEEEEEEecCcccCcccceeeEEEecc
Confidence 32 22211 124566778877543 23468888888853
No 23
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=90.01 E-value=0.7 Score=42.72 Aligned_cols=99 Identities=15% Similarity=0.234 Sum_probs=64.0
Q ss_pred ceEEecCCCC---CCeEEEEEcCCCeEEeEEEEEcccCCCce---EEEEEEEEEeCCC-cEEEEE--------eceeeee
Q 032423 6 YTYWAPEENH---SDWTLLINLQEPVSFNVLQVQEPIHMGQR---ISRFHLDILNEER-KWKKVI--------NGTTVGY 70 (141)
Q Consensus 6 ~T~Wa~~~~~---~~~~leldL~~~~~fn~V~l~E~i~~gqr---I~~f~Ie~~~~dG-~W~~ia--------~GttIG~ 70 (141)
+--|.|+... .+.||+|||....-|..|..|=....|+- -+.|+|+||. +| .|...- .|-..-+
T Consensus 64 ~GAWCPk~~v~~~~~E~LQvdl~~~hlit~V~TQGR~~~G~G~Efa~~y~I~Y~R-pg~~Wi~wk~r~g~evi~gN~dt~ 142 (807)
T KOG1094|consen 64 SGAWCPKGQVNSKSKEYLQVDLQRLHLITSVETQGRHAGGLGKEFARAYKIRYSR-PGLRWISWKDRWGQEVIPGNEDTE 142 (807)
T ss_pred CcccCCCcccCccchhheEEeeeceEEEEEeeeccccCCCccceehhheeeeecc-CcchheeeccccCceecCCCCCcc
Confidence 4468887533 47799999999888888888865555543 5789999999 87 675443 3322222
Q ss_pred EEEE-EcC-CeeeeEEEEE-EEccCCCceecEEEEEeec
Q 032423 71 QRLL-QFP-TVKSQQLRFV-IDKSRAEPLISHLGIYMDK 106 (141)
Q Consensus 71 kri~-~f~-~Vta~~vRl~-i~~s~~~P~I~ef~vY~~p 106 (141)
.-++ .++ |+-|++|||. +.+...+..+ .+++|-.+
T Consensus 143 ~~v~r~L~ppivAr~vRf~P~s~~~rtVCm-RvEi~GC~ 180 (807)
T KOG1094|consen 143 GVVLRDLDPPIVARRVRFVPVSDRTRTVCM-RVELYGCL 180 (807)
T ss_pred hhhhhhcCchhhheeEEEEeccCCcceEEE-EEEEeccc
Confidence 2222 244 8999999998 3333333333 46677544
No 24
>KOG2687 consensus Spindle pole body protein, contains UNC-84 domain [Cell cycle control, cell division, chromosome partitioning]
Probab=89.62 E-value=5.7 Score=34.91 Aligned_cols=101 Identities=8% Similarity=0.030 Sum_probs=70.1
Q ss_pred CCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcc---cCCC----ceEEEEEEEEEeCC--CcEEEEE-eceeeee-E
Q 032423 3 EDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEP---IHMG----QRISRFHLDILNEE--RKWKKVI-NGTTVGY-Q 71 (141)
Q Consensus 3 g~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~---i~~g----qrI~~f~Ie~~~~d--G~W~~ia-~GttIG~-k 71 (141)
.-++..|+-+++ .+.++|+|.++..+..|.|+-- +... .-.+.|.|..+. + -+|..+. +-+..-. .
T Consensus 291 v~PG~Cw~FkGs--rg~v~V~La~~Iip~avTleHv~~sVspd~~~sSAPKdf~V~g~~-~~~~~~~~LLG~ftYD~d~~ 367 (414)
T KOG2687|consen 291 VSPGECWAFKGS--RGYVTVRLARFIIPSAVTLEHVPKSVSPDGNISSAPKDFDVFGST-QDCTEEEVLLGEFTYDLDGS 367 (414)
T ss_pred CCccceeeecCC--ceEEEEEecceEEeeeeeeecccceecCCCCcCcCCcceEEEeec-ccCCcCceeeEEEEECCCCC
Confidence 346788998776 5789999999999999999843 3322 347889998887 4 2555553 3222111 3
Q ss_pred EEEEcC--Cee---eeEEEEEEEccCCCc---eecEEEEEeec
Q 032423 72 RLLQFP--TVK---SQQLRFVIDKSRAEP---LISHLGIYMDK 106 (141)
Q Consensus 72 ri~~f~--~Vt---a~~vRl~i~~s~~~P---~I~ef~vY~~p 106 (141)
.+-.|. .-+ -+.|+|+|++..|.| +|+.|+||-.|
T Consensus 368 ~~QtF~~q~~~~~~~~~V~l~~~SN~G~p~fTCiYR~RVhG~~ 410 (414)
T KOG2687|consen 368 PIQTFSLQHDTSAPFKTVELRFNSNHGHPKFTCIYRFRVHGRP 410 (414)
T ss_pred cceEEeccCCCccccceEEEEEecCCCCCCceEEEEEEEcCcc
Confidence 333343 333 388999999998877 99999999764
No 25
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=89.61 E-value=0.63 Score=37.02 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=63.3
Q ss_pred CCcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEccc-CCCceEEEEEEEEEeCCCcEEEEEece--------eeeeEEE
Q 032423 3 EDIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPI-HMGQRISRFHLDILNEERKWKKVINGT--------TVGYQRL 73 (141)
Q Consensus 3 g~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i-~~gqrI~~f~Ie~~~~dG~W~~ia~Gt--------tIG~kri 73 (141)
.|..+||+++.....++|.|.|.+|.-|..|..--+. ..=-.+++|+|..-.++..+.+|.+|+ |.--+-.
T Consensus 30 ~dqsSRWss~~~~~~QyiiLkL~~paiV~sItFGKy~K~HvCNlK~fkv~gG~~~~~m~ell~~gLkND~~~Etf~l~~~ 109 (199)
T PF06588_consen 30 NDQSSRWSSSSNSPPQYIILKLESPAIVKSITFGKYEKPHVCNLKKFKVYGGMDEENMIELLHGGLKNDSNPETFNLKHK 109 (199)
T ss_pred CCccccccCCCCCCCcEEEEEcCCCeEEEEEeccccccCccccceeeEEeccCCHHHHHHHHhhhccCCCCCceEEeEEe
Confidence 3567999999999999999999999999988887553 122348999999755234666776654 1111111
Q ss_pred EE--c-CCeeeeEEEEEEEccCCC
Q 032423 74 LQ--F-PTVKSQQLRFVIDKSRAE 94 (141)
Q Consensus 74 ~~--f-~~Vta~~vRl~i~~s~~~ 94 (141)
.. . .....++|+|.=+.+.|+
T Consensus 110 ~~~~~~~~fP~rYIKIvPL~swGp 133 (199)
T PF06588_consen 110 TNNGIENYFPCRYIKIVPLQSWGP 133 (199)
T ss_pred cCCcccceeeeeeeEEechhhcCC
Confidence 11 0 245778999997777764
No 26
>PF07461 NADase_NGA: Nicotine adenine dinucleotide glycohydrolase (NADase); InterPro: IPR010900 This family consists of several bacterial nicotine adenine dinucleotide glycohydrolase (NGA) proteins which appear to be specific to Streptococcus pyogenes. NAD glycohydrolase (NADase) is a potential virulence factor. Streptococcal NADase may contribute to virulence by its ability to cleave beta-NAD at the ribose-nicotinamide bond, depleting intracellular NAD pools and producing the potent vasoactive compound nicotinamide [].; PDB: 3PNT_C.
Probab=89.60 E-value=0.1 Score=44.90 Aligned_cols=103 Identities=15% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCCcceEEecCC--CCCCeEEEEEcCCCeEEeEEEEE-------cccCCCceEEEEEEEEEeCCCcEEEEEece--eee
Q 032423 1 MKEDIYTYWAPEE--NHSDWTLLINLQEPVSFNVLQVQ-------EPIHMGQRISRFHLDILNEERKWKKVINGT--TVG 69 (141)
Q Consensus 1 ~Dg~~~T~Wa~~~--~~~~~~leldL~~~~~fn~V~l~-------E~i~~gqrI~~f~Ie~~~~dG~W~~ia~Gt--tIG 69 (141)
+||++.|-|.-.. +--...|+++|.+|..|+.|+|- |+.....||.+-.|.+.. +..- .+.+-- ..+
T Consensus 73 lDg~~~TsW~En~~G~GVGE~Ls~kf~sPi~i~~IqIiNGfassKe~y~kNNRIaKlkI~~~~-Gd~l-Vl~q~~eLkD~ 150 (446)
T PF07461_consen 73 LDGDMKTSWCENSPGGGVGETLSYKFASPIKIDRIQIINGFASSKENYYKNNRIAKLKITFYN-GDKL-VLVQKVELKDT 150 (446)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecCCceeeEeecCCCCCcceEEEEEecCceeeceEEEEecCCchhhhHhhhccceeeeeeEec-CceE-EEEEEEEeccc
Confidence 6999999998643 22356799999999999999997 455667899999999876 4321 111111 122
Q ss_pred e-E--EEEEcC-CeeeeEEEEEEEccC-C----CceecEEEEEee
Q 032423 70 Y-Q--RLLQFP-TVKSQQLRFVIDKSR-A----EPLISHLGIYMD 105 (141)
Q Consensus 70 ~-k--ri~~f~-~Vta~~vRl~i~~s~-~----~P~I~ef~vY~~ 105 (141)
| + ..+.|+ .+++++|.|.|++-- | ..+|+|+.-++.
T Consensus 151 ~t~kp~~Ie~~kk~~vd~i~i~IqeV~kGtn~~~~alsEvtF~nk 195 (446)
T PF07461_consen 151 YTKKPQHIELDKKFDVDRIDIEIQEVYKGTNKNITALSEVTFGNK 195 (446)
T ss_dssp ---------------------------------------------
T ss_pred cccCcceeeecceeeceeEEEEEeeeecCccccccchhhhhhhhh
Confidence 3 1 245666 799999999987652 2 468888776653
No 27
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=89.43 E-value=0.47 Score=42.03 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=66.8
Q ss_pred CCCCcceEEec-------CCCCCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCC-CcEEEEEecee---ee
Q 032423 1 MKEDIYTYWAP-------EENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEE-RKWKKVINGTT---VG 69 (141)
Q Consensus 1 ~Dg~~~T~Wa~-------~~~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~d-G~W~~ia~Gtt---IG 69 (141)
+|||..||=-. -+++...-++|+||+|--||.|++-=+ ....|--+|.||+.. | .-|..+++-+. -+
T Consensus 303 ldgd~~~ydl~~gysRh~i~D~~~sgi~i~LG~p~iINhIrmllW-drdsraysY~veVSm-D~~hW~rV~DyS~Y~CRs 380 (620)
T KOG4350|consen 303 LDGDVTTYDLSNGYSRHCINDENISGIQIDLGKPFIINHIRMLLW-DRDSRAYSYQVEVSM-DDAHWNRVADYSEYDCRS 380 (620)
T ss_pred ccCCcceeecccCccccccCcccceeEEEecCCchhhhhhhhhhh-cccccceEEEEEEec-chhhhHHhhhhhhhcccc
Confidence 57777666443 134466789999999999999988743 446788899999987 5 47988876442 35
Q ss_pred eEEEEEcCCeeeeEEEEEEEccCC--CceecEEEEE
Q 032423 70 YQRLLQFPTVKSQQLRFVIDKSRA--EPLISHLGIY 103 (141)
Q Consensus 70 ~kri~~f~~Vta~~vRl~i~~s~~--~P~I~ef~vY 103 (141)
..| +.|++--.+.+||.=+.... ...+..|++-
T Consensus 381 wQ~-LyF~arvvR~Irlvgt~Ntvn~~fh~v~~EaM 415 (620)
T KOG4350|consen 381 WQR-LYFTARVVRHIRLVGTNNTVNCKFHGVRIEAM 415 (620)
T ss_pred cee-eeeecceeEEEEEEeeccceeeEEEEEEEEEE
Confidence 555 46776666777776433322 1344455444
No 28
>PF03561 Allantoicase: Allantoicase repeat; InterPro: IPR015908 Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions. While purine degradation converges to uric acid in all vertebrates, its further degradation varies from species to species. Uric acid is excreted by birds, reptiles, and some mammals that do not have a functional uricase gene, whereas other mammals produce allantoin. Amphibians and microorganisms produce ammonia and carbon dioxide using the uricolytic pathway. Allantoicase performs the second step in this pathway catalyzing the conversion of allantoate into ureidoglycolate and urea. allantoate + H(2)0 = (S)-ureidoglycolate + urea The structure of allantoicase is best described as being composed of two repeats (the allantoicase repeats: AR1 and AR2), which are connected by a flexible linker. The crystal structure, resolved at 2.4A resolution, reveals that AR1 has a very similar fold to AR2, both repeats being jelly-roll motifs, composed of four-stranded and five-stranded antiparallel beta-sheets []. Each jelly-roll motif has two conserved surface patches that probably constitute the active site []. The mammalian proteins matched by this entry are thought to be non-functional as mammals do not appear to possess allantoicase activity [].; GO: 0004037 allantoicase activity; PDB: 1O59_A 1SG3_A.
Probab=87.54 E-value=11 Score=28.71 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=52.1
Q ss_pred CeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEe-----------C-CCcEEEEEeceeeeeEEEEEcC-----Ce
Q 032423 17 DWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILN-----------E-ERKWKKVINGTTVGYQRLLQFP-----TV 79 (141)
Q Consensus 17 ~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~-----------~-dG~W~~ia~GttIG~kri~~f~-----~V 79 (141)
.-|..|.|+.+..|..|.|-=.-=.|.--....||+.. . +..|.+|..-+.++..+.+.|. .-
T Consensus 51 ~DW~IikLg~~G~I~~i~IDT~~F~GN~P~~~sv~~~~~~~~~~~~~~~~~~~~W~~llp~~~l~~~~~h~f~~~~~~~~ 130 (152)
T PF03561_consen 51 HDWAIIKLGAPGVIRGIEIDTAHFKGNYPPSVSVEGAYLPDDDDPEIIELDSEEWVELLPRTKLGPDKRHYFKLEINNEK 130 (152)
T ss_dssp -EEEEEE-SSSCEEEEEEEE-TT-SSSB-SEEEEEEE--SS----S---TT-TTEEEEEEEEE--TT-EEEEE-TECECS
T ss_pred CCEEEEECCCCCEEEEEEEecccccCCCCCEEEEEEEEcCCCcccccccccCCCceEeecceEcCCCcccEeccccCCCC
Confidence 46999999999999999998433334444444444332 1 3479999988887666655554 34
Q ss_pred eeeEEEEEEEccCCCceecEEEEE
Q 032423 80 KSQQLRFVIDKSRAEPLISHLGIY 103 (141)
Q Consensus 80 ta~~vRl~i~~s~~~P~I~ef~vY 103 (141)
....|||+|-- .| -|+.|.||
T Consensus 131 ~~THvRl~i~P-DG--GIaRlRv~ 151 (152)
T PF03561_consen 131 PFTHVRLNIYP-DG--GIARLRVY 151 (152)
T ss_dssp -BSEEEEEEES-S---EESEEEEE
T ss_pred ceeEEEEEEeC-CC--CEEEEEEc
Confidence 56679999862 23 68888887
No 29
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=83.49 E-value=6.7 Score=35.01 Aligned_cols=71 Identities=15% Similarity=0.322 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCC-cEEEEEeceee---eeEEEEEcCCeeeeEEEEEEE
Q 032423 16 SDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEER-KWKKVINGTTV---GYQRLLQFPTVKSQQLRFVID 89 (141)
Q Consensus 16 ~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG-~W~~ia~GttI---G~kri~~f~~Vta~~vRl~i~ 89 (141)
.++.|.+.|++|--+..++|-=+ ....|-.+|-||+.. |- +|+.+++.+.. +... +.|+|..+.++||+=+
T Consensus 474 GSG~IvvqLaQPY~igSmRlLLW-dCDDR~YSyYvevSt-Nq~eW~mvvDRtn~~c~sWQ~-~~F~p~PvvyIRiVGT 548 (620)
T KOG4350|consen 474 GSGLIVVQLAQPYIIGSMRLLLW-DCDDRFYSYYVEVST-NQDEWVMVVDRTNEECHSWQE-LIFDPLPVVYIRIVGT 548 (620)
T ss_pred CCceEEEEecCceeeeeeeEEEE-ecCCCceeEEEEEEe-CchheEEeeecccccccchhh-eeecCCceEEEEEEec
Confidence 46789999999999999988743 346799999999998 65 89999988754 4443 6789999999998743
No 30
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=79.60 E-value=38 Score=28.89 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=64.4
Q ss_pred CeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeC----------CCcEEEEEeceeeeeEEEEEcC---CeeeeE
Q 032423 17 DWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNE----------ERKWKKVINGTTVGYQRLLQFP---TVKSQQ 83 (141)
Q Consensus 17 ~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~----------dG~W~~ia~GttIG~kri~~f~---~Vta~~ 83 (141)
.-|+.|.|+.+..|..|.|-=..=.|.--.+..||+-.. +..|.+|..-+..|..+.+.|. .-...-
T Consensus 61 ~DW~ivkLg~~G~I~~v~vDTa~F~GN~p~~~siea~~~~~~~~~~~~~~~~W~ell~~t~l~~~~~h~f~v~~~~~~TH 140 (322)
T TIGR02961 61 HDWCIVRLGVPGVIHGVDIDTSFFTGNYPPAVSIEACLSPEPSPEILLDSTEWVELLPRTELGPSQHHYFEVSSKQRFTH 140 (322)
T ss_pred CCEEEEEeCCCcEEEEEEEeCcccCCCCCCeEEEEEEeCCCCCccccccCCCCcEeecccccCCCceeeEEcCCCCceEE
Confidence 469999999999999999985444455555555654331 2259999999988888888886 345577
Q ss_pred EEEEEEccCCCceecEEEEEeecc
Q 032423 84 LRFVIDKSRAEPLISHLGIYMDKF 107 (141)
Q Consensus 84 vRl~i~~s~~~P~I~ef~vY~~p~ 107 (141)
|||+|---. -|+.|.||-.+.
T Consensus 141 vRLni~PDG---GiaRlRvyG~~~ 161 (322)
T TIGR02961 141 IRLNIYPDG---GIARLRVYGIVV 161 (322)
T ss_pred EEEEEECCC---CeeeEEeecccc
Confidence 999986332 689999997643
No 31
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=79.49 E-value=24 Score=30.07 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=59.0
Q ss_pred CeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeC-----------CCcEEEEEeceeeeeEEEEEcC-----Cee
Q 032423 17 DWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNE-----------ERKWKKVINGTTVGYQRLLQFP-----TVK 80 (141)
Q Consensus 17 ~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~-----------dG~W~~ia~GttIG~kri~~f~-----~Vt 80 (141)
.-|+.|.|+.+..|..|.|-=.-=.|.--.+..|++-.- +.+|++|..-+.++..+.+.|. ...
T Consensus 221 ~DW~IvkLg~~G~I~~i~VDT~~FkGN~P~~~si~a~~~~~~~~~~~~~~~~~W~~llp~t~l~~~~~h~f~~~~~~~~~ 300 (322)
T TIGR02961 221 NDWAIVRLGAPGEIERIEVDTAHFKGNYPDSCSLQAADLEGGEDEQLITQSMFWVELLPRTKLGPDTEHVFESSLAASGP 300 (322)
T ss_pred CCEEEEEcCCCCeEEEEEEeCCccCCCCCCeEEEEEEeCCCCCchhhhccCCCceEcccccccCCCcEeeecccccCCCc
Confidence 469999999999999999985443455444555554321 2359999988888777777774 345
Q ss_pred eeEEEEEEEccCCCceecEEEEE
Q 032423 81 SQQLRFVIDKSRAEPLISHLGIY 103 (141)
Q Consensus 81 a~~vRl~i~~s~~~P~I~ef~vY 103 (141)
..-|||+|---. -|+.+.||
T Consensus 301 ~THvRlnI~PDG---GvsRlRv~ 320 (322)
T TIGR02961 301 VTHVRLNIIPDG---GVSRLRLW 320 (322)
T ss_pred eEEEEEEEECCC---CeeeEEEe
Confidence 678999986333 46777776
No 32
>PRK13257 allantoicase; Provisional
Probab=77.71 E-value=25 Score=30.15 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=59.1
Q ss_pred CeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeC-----------CCcEEEEEeceeeeeEEEEEcC-----Cee
Q 032423 17 DWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNE-----------ERKWKKVINGTTVGYQRLLQFP-----TVK 80 (141)
Q Consensus 17 ~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~-----------dG~W~~ia~GttIG~kri~~f~-----~Vt 80 (141)
.-|+.|.|+.+..|..|.|-=.-=.|.--....|+.-.. +..|.+|..-+.++..+.+.|. ...
T Consensus 232 ~DW~iikLg~~G~I~~ieVDT~~FkGN~P~~~si~~~~~~~~~~~~~~~~~~~W~~Llp~tkl~pd~~h~F~~~~~~~~~ 311 (336)
T PRK13257 232 NDWVIVALAAPGVIRKIEVDTAHFKGNFPDRCSLQAAYVEGGTDSSLITQSMFWPELLPEQKLQMDTRHRFEAELAALGP 311 (336)
T ss_pred CCEEEEEcCCCCEEEEEEEeCcccCCCCCCeEEEEEEecCCCcccccccccCcCeEcccccccCCCcEeeecccccCCCc
Confidence 469999999999999999974433454444444443321 2359999988887777777775 345
Q ss_pred eeEEEEEEEccCCCceecEEEEEee
Q 032423 81 SQQLRFVIDKSRAEPLISHLGIYMD 105 (141)
Q Consensus 81 a~~vRl~i~~s~~~P~I~ef~vY~~ 105 (141)
..-|||+|---. -|+.+.||-.
T Consensus 312 ~THvRl~I~PDG---GvsRlRv~G~ 333 (336)
T PRK13257 312 VTHVRLNIFPDG---GVSRLRLWGK 333 (336)
T ss_pred eEEEEEEEECCC---CceeEEeeeE
Confidence 778999986333 5777777754
No 33
>PRK13257 allantoicase; Provisional
Probab=77.68 E-value=45 Score=28.64 Aligned_cols=87 Identities=14% Similarity=0.182 Sum_probs=63.5
Q ss_pred CeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeC-------CCcEEEEEeceeeeeEEEEEcC---CeeeeEEEE
Q 032423 17 DWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNE-------ERKWKKVINGTTVGYQRLLQFP---TVKSQQLRF 86 (141)
Q Consensus 17 ~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~-------dG~W~~ia~GttIG~kri~~f~---~Vta~~vRl 86 (141)
.-|+.|.|+.+..|..|.|-=..=.|.--.+..||+-.. +..|.+|..-+..+..+.+.|. +-...-|||
T Consensus 76 ~DW~IirLg~~G~I~~v~VDTa~F~GN~p~~~siea~~~~~~~~~~~~~W~ellp~~~l~p~~~h~f~v~~~~~~THvRL 155 (336)
T PRK13257 76 HDWAIVRLGVPGVIRGVDVDTAHFTGNYPPAASVEACYVPDGYPSDAAEWTEIVPATTLQGDSHHYFEVDDARRFTHVRL 155 (336)
T ss_pred CCEEEEEcCCCcEEEEEEEeccccCCCCCCeEEEEEEecCCCCCccCCCceEeccccccCCCcEeeEEcCCCCceEEEEE
Confidence 369999999999999999985544465555566665431 2359999988888877777775 345677999
Q ss_pred EEEccCCCceecEEEEEeec
Q 032423 87 VIDKSRAEPLISHLGIYMDK 106 (141)
Q Consensus 87 ~i~~s~~~P~I~ef~vY~~p 106 (141)
+|---. -|+.|.||-.+
T Consensus 156 niyPDG---GvaRlRv~G~~ 172 (336)
T PRK13257 156 NIYPDG---GVARLRVYGEP 172 (336)
T ss_pred EEECCC---CeeEEEEeeee
Confidence 986333 58889999754
No 34
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=76.29 E-value=27 Score=31.58 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=64.0
Q ss_pred CeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeC-----------CCcEEEEEeceeeeeEEEEEcC---Ceeee
Q 032423 17 DWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNE-----------ERKWKKVINGTTVGYQRLLQFP---TVKSQ 82 (141)
Q Consensus 17 ~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~-----------dG~W~~ia~GttIG~kri~~f~---~Vta~ 82 (141)
.-|+.|.|+.+..|..|.|-=.-=.|.--.+..|++-.- +.+|.+|..-+..+..+.+.|+ +....
T Consensus 233 ~Dw~iv~Lg~~G~I~~v~vDT~~FkGN~P~~~si~a~~~~~~~~~~~~~~~~~W~~llp~~~l~~~~~h~f~~~~~~~~T 312 (516)
T PRK13797 233 HDWAVVRLATQGTIVRAEVDTRHFRGNAPRAVALWAADAPDLLDPDDLAAITEWRPLLPRTRVQPNTRHLFDLEVPVQAT 312 (516)
T ss_pred CCEEEEEeCCCCEEEEEEEeCCccCCCCCCeEEEEEEecCCCCchhhhccCCCceEcCCCcccCCCceeeeecCCCCCce
Confidence 469999999999999999985443455555555554321 1259999988887777778884 45668
Q ss_pred EEEEEEEccCCCceecEEEEEeecc
Q 032423 83 QLRFVIDKSRAEPLISHLGIYMDKF 107 (141)
Q Consensus 83 ~vRl~i~~s~~~P~I~ef~vY~~p~ 107 (141)
.|||+|---. -|+.+.||-.+.
T Consensus 313 Hvrl~i~PDG---GvsRlRv~G~~~ 334 (516)
T PRK13797 313 HVRVDAIPDG---GLARLRLTGAPT 334 (516)
T ss_pred EEEEEEECCC---CeeeEEEeeeec
Confidence 8999986333 689999998765
No 35
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=71.86 E-value=41 Score=30.49 Aligned_cols=86 Identities=13% Similarity=0.196 Sum_probs=59.9
Q ss_pred CeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeC------------CCcEEEEEeceeeeeEEEEEcC--C---e
Q 032423 17 DWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNE------------ERKWKKVINGTTVGYQRLLQFP--T---V 79 (141)
Q Consensus 17 ~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~------------dG~W~~ia~GttIG~kri~~f~--~---V 79 (141)
.-|+.|.|+.+..|..|.|-=..=.|.--....||+-.. +..|.+|..-+..+....+.|. . .
T Consensus 70 ~DW~iirLg~~g~i~~v~vDTa~F~GN~p~~~siea~~~~~~~~~~~~~~~~~~W~~ll~~~~l~~~~~h~f~~~~~~~~ 149 (516)
T PRK13797 70 ADWAIVRLGAPGIAHAVTVDTTHFTGNAPEAVEIHGATLAGYPSAEDVADDSVHWVELVPRTPIAADAVNVLPVASSGRL 149 (516)
T ss_pred CCEEEEEeCCCcEEEEEEEeccccCCCCCCeEEEEEEecCCCCChhhhcccCCCCcEeeccccCCCCceeeEEcCCCCcc
Confidence 469999999999999999985443455444555554321 1269999988877777767775 1 1
Q ss_pred eeeEEEEEEEccCCCceecEEEEEee
Q 032423 80 KSQQLRFVIDKSRAEPLISHLGIYMD 105 (141)
Q Consensus 80 ta~~vRl~i~~s~~~P~I~ef~vY~~ 105 (141)
...-|||+|---. -|+.|.||-.
T Consensus 150 ~~THvRlni~PDG---GiaRlRv~G~ 172 (516)
T PRK13797 150 RITHLRLTIHPDG---GVARLRVHGT 172 (516)
T ss_pred eeeEEEEEEecCC---CeeEEEEecc
Confidence 1367899986332 6889999975
No 36
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=54.73 E-value=53 Score=22.58 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=34.5
Q ss_pred eEEEEEcCCCeEEeEEEEE-cccCCCceEEEEEEEEEeCCCcEEEEEecee
Q 032423 18 WTLLINLQEPVSFNVLQVQ-EPIHMGQRISRFHLDILNEERKWKKVINGTT 67 (141)
Q Consensus 18 ~~leldL~~~~~fn~V~l~-E~i~~gqrI~~f~Ie~~~~dG~W~~ia~Gtt 67 (141)
..++++|-+|...+.|... +-+..|.++.-+.++.++++| +.++.++.
T Consensus 65 ~~l~i~f~~p~~~g~l~a~a~v~~~gr~~~~~~~~i~~~~g--~~va~~~~ 113 (117)
T TIGR00369 65 LELNANHLRPAREGKVRAIAQVVHLGRQTGVAEIEIVDEQG--RLCALSRG 113 (117)
T ss_pred EEEEeeeccccCCCEEEEEEEEEecCceEEEEEEEEECCCC--CEEEEEEE
Confidence 4577888888877744443 455779999999999987456 56776654
No 37
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=52.15 E-value=25 Score=35.29 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=41.3
Q ss_pred cceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCC-C-cEEE
Q 032423 5 IYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEE-R-KWKK 61 (141)
Q Consensus 5 ~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~d-G-~W~~ 61 (141)
..|||.++.+.....|+|||..+.-|-++++.-- +-|-...-||-+. | | +|+.
T Consensus 108 ~~~WWQSengv~~vtIQLDLEAEFhFTHLImtFk---tfRPAAMliERS~-DFGkTW~v 162 (1758)
T KOG0994|consen 108 NITWWQSENGVENVTIQLDLEAEFHFTHLIMTFK---TFRPAAMLIERSS-DFGKTWHV 162 (1758)
T ss_pred ccchhhcccCCCcceEEeehhhheeeeeeeEeec---cCCcceeeeeecc-ccccccee
Confidence 4489999999999999999999999999887732 4566666777655 4 5 5764
No 38
>PF13028 DUF3889: Protein of unknown function (DUF3889)
Probab=49.51 E-value=91 Score=22.02 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=31.6
Q ss_pred CCCceEEEEEEEEEeCCCcEEEEEeceeeeeEEEEEcCCeeeeEEEEEEEc
Q 032423 40 HMGQRISRFHLDILNEERKWKKVINGTTVGYQRLLQFPTVKSQQLRFVIDK 90 (141)
Q Consensus 40 ~~gqrI~~f~Ie~~~~dG~W~~ia~GttIG~kri~~f~~Vta~~vRl~i~~ 90 (141)
..+|-++.|+|...+ +|. .-|-.--+.|+|.|-+-++|++.+
T Consensus 55 ~~~~t~e~Fkl~l~~-~~k--------efgV~v~V~f~p~T~ki~~I~~~e 96 (97)
T PF13028_consen 55 NDEQTVEKFKLWLRE-GGK--------EFGVFVTVSFNPKTEKIISINVEE 96 (97)
T ss_pred CCcceEEEEEEEEEc-CCe--------EEEEEEEEEEeCCCCcEEEEEEEe
Confidence 445679999999988 772 334444588999999999988754
No 39
>PF12571 DUF3751: Phage tail-collar fibre protein; InterPro: IPR022225 This entry is represented by Bacteriophage HP1, Orf31. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family is found in bacteria and viruses, and is approximately 160 amino acids in length, some annotation suggests that it may be a tail fibre protein. There are two completely conserved residues (K and W) that may be functionally important.
Probab=48.76 E-value=48 Score=24.84 Aligned_cols=64 Identities=9% Similarity=0.180 Sum_probs=35.8
Q ss_pred EEcCCeeeeEEEEEE--EccCCCceecEEEEEeecccccc--cCCCccceeeec--CceeEEeccccccc
Q 032423 74 LQFPTVKSQQLRFVI--DKSRAEPLISHLGIYMDKFSTVS--SMSDSTSQTSLN--GSHILQKSMSNHSE 137 (141)
Q Consensus 74 ~~f~~Vta~~vRl~i--~~s~~~P~I~ef~vY~~p~~~~s--~~~~~~~~~~~~--~~~~~~~~~~~~~~ 137 (141)
....++....+++.+ ....+...|+|||+|.+...+.. ..+...++...+ |..+.++..-..++
T Consensus 64 ~~~~~~n~n~v~~~~~i~~~~ggf~irEiGL~d~~G~Liai~~~~~~~K~~~~~g~g~~~~~~~~l~~s~ 133 (159)
T PF12571_consen 64 NSVDPVNPNQVVYSAVIPSDVGGFTIREIGLFDEDGTLIAIANFPPTYKPATSEGAGNELTRNFVLEVSN 133 (159)
T ss_pred CccCCCCCCEEEEEEEECCccCCcEEEEEEEEccCCCEEEEEecCCcccccccCCCCeEEEEEEEEEECC
Confidence 333556666666663 45567899999999976554444 233333333333 44444444433333
No 40
>PHA00664 hypothetical protein
Probab=48.01 E-value=1.2e+02 Score=22.93 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=53.0
Q ss_pred EEEcCCCe--------EEeEEEEEccc-CCCceEEEEEEEEEeCCCcEEEEEece-------eeeeEEEEEcCCeeeeEE
Q 032423 21 LINLQEPV--------SFNVLQVQEPI-HMGQRISRFHLDILNEERKWKKVINGT-------TVGYQRLLQFPTVKSQQL 84 (141)
Q Consensus 21 eldL~~~~--------~fn~V~l~E~i-~~gqrI~~f~Ie~~~~dG~W~~ia~Gt-------tIG~kri~~f~~Vta~~v 84 (141)
.|||++.. .+-.|+..|.. ..|.---.+.++-.+.+..|..++.-. ..|++-.+.+|.=.-|++
T Consensus 24 vIDlg~~~~DiG~g~~l~l~v~v~e~a~a~g~atv~v~l~~s~D~ss~~~i~~s~a~~~A~L~aG~~~v~~lP~~~~RYl 103 (140)
T PHA00664 24 VIDLGSANPDIGMGDPLKMVITVDEAADAAGAATVTFSVQQSDDNASFSSVTDTGAIAKASLTAGKRVVIPMPTKLERYL 103 (140)
T ss_pred eEeccCcccccCCCCceEEEEEEeeccccCCceEEEEEEEecCCCCCcchhhhccccchhhhcCCceEEeecCCCceeEE
Confidence 57777543 24455566766 345555667777666134899987643 357777667775457999
Q ss_pred EEEEEccCCCceecEEEEE
Q 032423 85 RFVIDKSRAEPLISHLGIY 103 (141)
Q Consensus 85 Rl~i~~s~~~P~I~ef~vY 103 (141)
||+..-..+++.=-.|..|
T Consensus 104 RlnYtV~~gp~TaGk~ta~ 122 (140)
T PHA00664 104 RVNYTVATGPLTAGKFTAG 122 (140)
T ss_pred EEEEEEcCCCcccceEEee
Confidence 9997767666555555554
No 41
>KOG1396 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.87 E-value=4.2 Score=36.61 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=68.5
Q ss_pred CeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeC--CCcEEEEEeceeeeeEEEEEcC---CeeeeEEEEEEEcc
Q 032423 17 DWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNE--ERKWKKVINGTTVGYQRLLQFP---TVKSQQLRFVIDKS 91 (141)
Q Consensus 17 ~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~--dG~W~~ia~GttIG~kri~~f~---~Vta~~vRl~i~~s 91 (141)
..++.|.|-++.-+|.|.|-=+--...+-..|.|....- -..|..+..++.-..|-+-.|+ ++.|+||||.+++.
T Consensus 167 ~K~vviel~e~~lv~~~~ian~e~~ss~pk~f~v~~s~~~P~~~w~~~G~f~a~N~r~lQsF~~n~~~wakYlKIellsH 246 (530)
T KOG1396|consen 167 KKFVVIELCERILVNTLRIANFEHFSSPPKDFSVSISIRYPTPSWIHLGQFHARNERNLQSFPLNEQKWAKYLKIELLSH 246 (530)
T ss_pred cceEEeehhHHHhhhheeeeeecccCCCCCceeeccccccCCccceecCcccccchhhhcCCCCCchhhhhHhhhhhhhh
Confidence 568999999999999999985444567777888776542 3689999999888888787775 69999999999887
Q ss_pred CCC---ceecEEEEE
Q 032423 92 RAE---PLISHLGIY 103 (141)
Q Consensus 92 ~~~---P~I~ef~vY 103 (141)
.|. =.++-+.||
T Consensus 247 ygsEfyCpvSli~Vy 261 (530)
T KOG1396|consen 247 YGSEFYCPVSLIRVY 261 (530)
T ss_pred cccccccchhhhhhh
Confidence 763 356667777
No 42
>KOG4145 consensus Allantoicase [Nucleotide transport and metabolism]
Probab=43.51 E-value=59 Score=27.38 Aligned_cols=89 Identities=10% Similarity=0.212 Sum_probs=56.4
Q ss_pred cceEEecCCC---CCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeC-------CCcEEEEEeceeeeeEEEE
Q 032423 5 IYTYWAPEEN---HSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNE-------ERKWKKVINGTTVGYQRLL 74 (141)
Q Consensus 5 ~~T~Wa~~~~---~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~-------dG~W~~ia~GttIG~kri~ 74 (141)
+.--|-++.+ ....|..|.|+...-++.+.+--.-=.|.--+--.||..++ +|+|.+|.-.+..|..+-+
T Consensus 230 m~dgwet~rsr~~gh~dw~vi~lg~~~~i~~~ivdt~hf~gn~p~~i~~e~~~s~~~~~~~~~~wv~l~~~~k~gp~~eh 309 (340)
T KOG4145|consen 230 MSDGWETKRSRQPGHTDWAVIQLGRESFIEKIIVDTAHFRGNFPQFITVELKESESSENTGEGTWVELVGKSKTGPDKEH 309 (340)
T ss_pred cccccccccccCCCCcceEEEEechhhhhhhhheehhhccCCCCceEEEEeecCcccCcCCCceEEEEeccccCCCcHHH
Confidence 4445665432 24679999999998777776653322232222334444332 4689999988888887766
Q ss_pred EcC---CeeeeEEEEEEEccCC
Q 032423 75 QFP---TVKSQQLRFVIDKSRA 93 (141)
Q Consensus 75 ~f~---~Vta~~vRl~i~~s~~ 93 (141)
.|. ....+.||+.|.--.+
T Consensus 310 v~~~~~s~~~shv~~~iipdgg 331 (340)
T KOG4145|consen 310 VYEIRKSIRVSHVKLTIIPDGG 331 (340)
T ss_pred HhhhhccceeeeEEEEEecCCC
Confidence 654 5677788888764443
No 43
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=40.92 E-value=1e+02 Score=20.24 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=33.5
Q ss_pred CeEEEEEcCCCeEEeEEEEE-cccCCCceEEEEEEEEEeCCCcEEEEEece
Q 032423 17 DWTLLINLQEPVSFNVLQVQ-EPIHMGQRISRFHLDILNEERKWKKVINGT 66 (141)
Q Consensus 17 ~~~leldL~~~~~fn~V~l~-E~i~~gqrI~~f~Ie~~~~dG~W~~ia~Gt 66 (141)
...++++|-+|..++.|.++ +-...|.+.-.+.++.++++| +.++.|+
T Consensus 60 ~~~~~i~f~~p~~~~~v~~~~~v~~~g~~~~~~~~~~~~~~~--~~~a~a~ 108 (113)
T cd03443 60 TVDLNVNYLRPARGGDLTARARVVKLGRRLAVVEVEVTDEDG--KLVATAR 108 (113)
T ss_pred EEEEEEeEEcCCCCCeEEEEEEEEecCceEEEEEEEEECCCC--CEEEEEE
Confidence 34678999999887767666 445668888888888887225 4556554
No 44
>PF15538 Toxin_61: Putative toxin 61
Probab=36.41 E-value=32 Score=26.44 Aligned_cols=83 Identities=17% Similarity=0.343 Sum_probs=51.3
Q ss_pred EEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCCcEEEEEece---eeee--E-EE----EEcCC---eeeeEEEEEE
Q 032423 22 INLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEERKWKKVINGT---TVGY--Q-RL----LQFPT---VKSQQLRFVI 88 (141)
Q Consensus 22 ldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG~W~~ia~Gt---tIG~--k-ri----~~f~~---Vta~~vRl~i 88 (141)
|||.+|.++ |.|..|...-+|..-.-- -|+|-.+.... ..|- . ++ +.++. +-...=.+.+
T Consensus 49 IDf~~PV~V------etIn~Gk~~yQ~q~pg~~-qGnwys~~~~~~pt~LGINP~g~~~~t~~~v~Kv~~~y~~~~~vev 121 (157)
T PF15538_consen 49 IDFSKPVKV------ETINRGKNLYQNQRPGGW-QGNWYSPDENAPPTELGINPEGRIRGTDIIVPKVLNIYQSQQKVEV 121 (157)
T ss_pred CCcCCceEE------EEeCCCCEEEEEEcCCCc-CceeeccCCCCCcccceeCcccccccccceeeccccceeeccceEE
Confidence 677777665 566778888888776544 68898775532 2221 1 11 01121 1111223557
Q ss_pred EccCCCceecEEEEEeecccccc
Q 032423 89 DKSRAEPLISHLGIYMDKFSTVS 111 (141)
Q Consensus 89 ~~s~~~P~I~ef~vY~~p~~~~s 111 (141)
+.|.+.|.+-...|++.|..+.-
T Consensus 122 LrStAaPi~DtWSv~~~py~a~G 144 (157)
T PF15538_consen 122 LRSTAAPILDTWSVPKEPYQAKG 144 (157)
T ss_pred EeeeccccccccccCCccccccC
Confidence 88889999999999988887654
No 45
>KOG3512 consensus Netrin, axonal chemotropic factor [Signal transduction mechanisms]
Probab=36.05 E-value=87 Score=28.51 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=38.5
Q ss_pred cceEEecCC-----CCCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeCCC-cEEEE
Q 032423 5 IYTYWAPEE-----NHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNEER-KWKKV 62 (141)
Q Consensus 5 ~~T~Wa~~~-----~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~dG-~W~~i 62 (141)
.-|+|.+.. .-....|+|.|++..++-.|+|.-- ..|-.+..|+-+...| .|+++
T Consensus 108 n~TcWqS~tw~~~~~PlnVtlTLSlgKkfELT~Vsl~Fc---S~rPdsmaL~KS~D~GrTWqPf 168 (592)
T KOG3512|consen 108 NATCWQSETWSRYPSPLNVTLTLSLGKKFELTYVSLTFC---SGRPDSMALEKSLDYGRTWQPF 168 (592)
T ss_pred CcceeeccccCCCCCCceEEEEEecCcEEEEEEEEEEEe---cCCCceeeeeeccccCCccccc
Confidence 358999851 2235678899999988888888832 3567777788654146 79986
No 46
>PF00577 Usher: Outer membrane usher protein; InterPro: IPR000015 In Gram-negative bacteria the biogenesis of fimbriae (or pili) requires a two- component assembly and transport system which is composed of a periplasmic chaperone (see PDOC00552 from PROSITEDOC) and an outer membrane protein which has been termed a molecular 'usher' [, , ]. The usher protein is rather large (from 86 to 100 kDa) and seems to be mainly composed of membrane-spanning beta-sheets, a structure reminiscent of porins. Although the degree of sequence similarity of these proteins is not very high, they share a number of characteristics. One of these is the presence of two pairs of cysteines, the first one located in the N-terminal part and the second at the C-terminal extremity that are probably involved in disulphide bonds. The best conserved region is located in the central part of these proteins.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2VQI_B 3FIP_A 3RFZ_E 3OHN_A 3FCG_B.
Probab=33.38 E-value=1.2e+02 Score=26.78 Aligned_cols=57 Identities=11% Similarity=0.218 Sum_probs=37.9
Q ss_pred EEEEEEeCCCcEEEEEece-eeeeEEEEEcCCeee-eEEEEEEEccCCCceecEEEEEeecc
Q 032423 48 FHLDILNEERKWKKVINGT-TVGYQRLLQFPTVKS-QQLRFVIDKSRAEPLISHLGIYMDKF 107 (141)
Q Consensus 48 f~Ie~~~~dG~W~~ia~Gt-tIG~kri~~f~~Vta-~~vRl~i~~s~~~P~I~ef~vY~~p~ 107 (141)
=+||+.. +| ..|++.. .-|.-.|-.+|++.. ..|+|+|+++.|.-....+-.|..|.
T Consensus 99 s~V~v~q-nG--~~iy~~~VppGpF~i~dlp~~~~~gdl~V~i~d~~G~~~~~~vp~~~~~~ 157 (552)
T PF00577_consen 99 STVEVYQ-NG--RLIYSTNVPPGPFEIDDLPLISGSGDLQVVITDADGREQVFTVPFYSSPN 157 (552)
T ss_dssp EEEEEEE-TT--EEEEEEEE-SEEEEE-SS-TTTTTSEEEEEEEETTS-EEEEEEEE---TT
T ss_pred cEEEEEE-CC--EEEEEEEeCCCCEEecCccccCCCceEEEEEEECCCCEEEEEEEeEeehh
Confidence 4788888 88 6677654 469999999998777 99999999998855444444444443
No 47
>PF01404 Ephrin_lbd: Ephrin receptor ligand binding domain; InterPro: IPR001090 Interactions between the Eph receptor tyrosine kinases and their membrane-bound ligands, ephrins are promiscuous, but largely fall into two groups: EphA receptors bind to GPI-anchored ephrin-A ligands, while EphB receptors bind to ephrin-B proteins that have a transmembrane and cytoplasmic domain []. Remarkably, ephrin-B proteins transduce signals, such that bidirectional signalling can occur upon interaction with Eph receptor. An important role of Eph receptors and ephrins is to mediate cell-contact-dependent repulsion. Eph receptors and ephrins also act at boundaries to channel neuronal growth cones along specific pathways, restrict the migration of neural crest cells, and via bidirectional signalling prevent intermingling between hindbrain segments. Intriguingly, Eph receptors and ephrins can also trigger an adhesive response of endothelial cells and are required for the remodelling of blood vessels []. Biochemical studies suggest that the extent of multimerisation of Eph receptors modulates the cellular response and that the actin cytoskeleton is one major target of the intracellular pathways activated by Eph receptors []. Eph receptors and ephrins have thus emerged as key regulators of the repulsion and adhesion of cells that underlie the establishment, maintenance, and remodelling of patterns of cellular organisation [].; GO: 0005003 ephrin receptor activity, 0005524 ATP binding, 0016020 membrane; PDB: 2BBA_A 2HLE_A 3NRU_L 1SHW_B 1KGY_A 3ETP_A 1NUK_A 2WO2_A 3CKH_A 2WO3_A ....
Probab=32.70 E-value=1.1e+02 Score=23.73 Aligned_cols=36 Identities=8% Similarity=0.149 Sum_probs=29.6
Q ss_pred eEEEEEcCCeeeeEEEEEEEccCCCceecEEEEEee
Q 032423 70 YQRLLQFPTVKSQQLRFVIDKSRAEPLISHLGIYMD 105 (141)
Q Consensus 70 ~kri~~f~~Vta~~vRl~i~~s~~~P~I~ef~vY~~ 105 (141)
..+...|.|++.+.+-|.+.+..+..+|..+.||+.
T Consensus 141 Nte~~s~g~ls~~GfYLAfqD~GAC~aL~sVrVyyk 176 (178)
T PF01404_consen 141 NTETRSFGPLSKRGFYLAFQDQGACMALLSVRVYYK 176 (178)
T ss_dssp EEEEEEES--SSSEEEEEEEESSBEEEEEEEEEEEE
T ss_pred EeeeeeccccCcceEEEEeccCCceEEEEEEEEEEE
Confidence 345678889999999999999988999999999974
No 48
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=31.84 E-value=78 Score=29.21 Aligned_cols=90 Identities=10% Similarity=0.142 Sum_probs=60.5
Q ss_pred CcceEEecCCCCCCeEEEEEcCCCeEEeEEEEEccc-CCCceEEEEEEEEEeCCC-cEEEEEece--eeeeEEEEEc---
Q 032423 4 DIYTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPI-HMGQRISRFHLDILNEER-KWKKVINGT--TVGYQRLLQF--- 76 (141)
Q Consensus 4 ~~~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i-~~gqrI~~f~Ie~~~~dG-~W~~ia~Gt--tIG~kri~~f--- 76 (141)
+++++|+++.++..+.|-|.|+++.-|-.|..--+- ..=-.+++|.|.... ++ .-.++..|+ ....+....+
T Consensus 34 d~NSRWS~~~N~~~QYiiLKl~~~aLV~~ITFGKy~k~HvcNlKkf~v~ggR-~~~~m~elL~~GLkNDSn~ETF~L~~K 112 (723)
T KOG2437|consen 34 DQNSRWSSESNYPPQYLILKLERPALVQNITFGKYEKTHVCNLKKFKVFGGR-NEENMTELLSSGLKNDSNKETFTLKHK 112 (723)
T ss_pred CcccccCCCCCCCceeEEEEcCCceeEEEEeccccccccccchhheEEeccc-chhhhHHHHhhhcCCccccceeeeEEe
Confidence 567999999999999999999999877777665442 112358999999877 66 455554443 1111111111
Q ss_pred ---CCeeeeEEEEEEEccCCC
Q 032423 77 ---PTVKSQQLRFVIDKSRAE 94 (141)
Q Consensus 77 ---~~Vta~~vRl~i~~s~~~ 94 (141)
.-.-+++|+|.=+.+.|.
T Consensus 113 ~~e~~f~c~YiKIvPL~Awg~ 133 (723)
T KOG2437|consen 113 IDEQMFPCRYIKIVPLLAWGP 133 (723)
T ss_pred eccceeeeeeEEEEEHhhcCC
Confidence 135688999998777763
No 49
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=29.02 E-value=64 Score=21.74 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=17.0
Q ss_pred EEEEEEEEeCCCcEEEEEec
Q 032423 46 SRFHLDILNEERKWKKVING 65 (141)
Q Consensus 46 ~~f~Ie~~~~dG~W~~ia~G 65 (141)
..|.|.|.+++|.|..|..-
T Consensus 39 ~~f~LkY~Ddegd~v~ltsd 58 (82)
T cd06407 39 SAFDLKYLDDDEEWVLLTCD 58 (82)
T ss_pred CeeEEEEECCCCCeEEeecH
Confidence 68999999967899999753
No 50
>PF03080 DUF239: Domain of unknown function (DUF239); InterPro: IPR004314 This is a family of plant proteins, a small number of which are putative peptidases (see for example Q9XIN9 from SWISSPROT). However, the structure of the protein PDB3:3eu8 has an alpha-alpha toroid fold and is similar to a glucoamylase, PDB:1ayx. Such glucoamylases are involved in breaking down complex sugars (e.g. starch). The biologically relevant state is likely to be monomeric. The putative active site is located at the centre of the toroid with a well defined large cavity. Further structural comparisons also show relationships with other glycohydrolases.
Probab=26.60 E-value=3.1e+02 Score=21.81 Aligned_cols=61 Identities=21% Similarity=0.461 Sum_probs=35.8
Q ss_pred ceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccCCCceE----------EEEEEEEEe-C-CCcEEEEEeceeeeeE
Q 032423 6 YTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRI----------SRFHLDILN-E-ERKWKKVINGTTVGYQ 71 (141)
Q Consensus 6 ~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI----------~~f~Ie~~~-~-dG~W~~ia~GttIG~k 71 (141)
-+||..+...+++..-++-+.= |++.-.|..|+.+ ....|.+.. . .|.|-....+..|||=
T Consensus 59 f~~wt~d~~~~tgCyN~~CpGF-----Vq~s~~i~~G~~~~~~S~~gG~q~~i~~~i~kD~~~gnWWL~~~~~~IGYw 131 (229)
T PF03080_consen 59 FVYWTADGYQKTGCYNLDCPGF-----VQVSSSIALGAAISPVSTYGGKQYEITLSIFKDPKSGNWWLYYGGEPIGYW 131 (229)
T ss_pred EEEEEccCCCCcceeCCCCCcE-----EEeCCccccceeeCCCccCCCceEEEEEEEEecCCCccEEEEEecceeeee
Confidence 4889887776666655544322 2333334444333 344455544 1 5788888888899985
No 51
>COG4266 Alc Allantoicase [Nucleotide transport and metabolism]
Probab=25.83 E-value=3.3e+02 Score=23.16 Aligned_cols=89 Identities=15% Similarity=0.254 Sum_probs=59.6
Q ss_pred CeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEE-------eCCCcEEEEEeceeeeeEEEEEcCC---eeeeEEEE
Q 032423 17 DWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDIL-------NEERKWKKVINGTTVGYQRLLQFPT---VKSQQLRF 86 (141)
Q Consensus 17 ~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~-------~~dG~W~~ia~GttIG~kri~~f~~---Vta~~vRl 86 (141)
--|+-|.|+.+..+.-+.|--..=.|..--.-.||+- +...+|.+|...+..|...-+-|+. -.-.-|||
T Consensus 76 ~D~~iiklg~~g~i~G~dIDTsfFtGNhppa~Siea~~~~eg~pdd~T~W~eilp~~~lgp~~hH~~~~~~~~~~THirl 155 (334)
T COG4266 76 YDWVIIKLGVPGRIKGVDIDTSFFTGNHPPAVSIEACYLAEGDPDDATRWVEILPKTGLGPNQHHYFNGLTKERFTHIRL 155 (334)
T ss_pred CCEEEEEecCCceEEeeeeecceecCCCCCcceehhhhcCCCCcccccceeeeeeccCCCCCccccccccccccceeEEE
Confidence 3589999999988888888754434544333344421 2023799999998888776666653 33456888
Q ss_pred EEEccCCCceecEEEEEeeccc
Q 032423 87 VIDKSRAEPLISHLGIYMDKFS 108 (141)
Q Consensus 87 ~i~~s~~~P~I~ef~vY~~p~~ 108 (141)
+|--- --|+.|.||-.|.-
T Consensus 156 ~iyPD---GGIARlRlYG~p~~ 174 (334)
T COG4266 156 NIYPD---GGIARLRLYGRPVP 174 (334)
T ss_pred EEcCC---CCEEEEEEcCcccC
Confidence 87532 36999999977543
No 52
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=22.14 E-value=56 Score=22.32 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=21.6
Q ss_pred eeeEEEEEcC-CeeeeEEEEEEEccCCC
Q 032423 68 VGYQRLLQFP-TVKSQQLRFVIDKSRAE 94 (141)
Q Consensus 68 IG~kri~~f~-~Vta~~vRl~i~~s~~~ 94 (141)
-|.|||+.|+ ||+-+.|+..++.+-|-
T Consensus 8 ~gEKRIi~f~RPvkf~dl~~kv~~afGq 35 (79)
T cd06405 8 NGEKRIIQFPRPVKFKDLQQKVTTAFGQ 35 (79)
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhCC
Confidence 3779999999 99988888777766553
No 53
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=21.93 E-value=2.4e+02 Score=20.12 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=27.3
Q ss_pred ceEEEEEEEEEeCCCcEEEEEeceeeeeEEEEE--c--CCeeeeEEEEEEE
Q 032423 43 QRISRFHLDILNEERKWKKVINGTTVGYQRLLQ--F--PTVKSQQLRFVID 89 (141)
Q Consensus 43 qrI~~f~Ie~~~~dG~W~~ia~GttIG~kri~~--f--~~Vta~~vRl~i~ 89 (141)
-+|+=|+++. +++|+.|+++.|-..-|+.. + .+.....-||++.
T Consensus 19 v~V~L~~~~~---~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~ 66 (112)
T PF00576_consen 19 VPVTLYRLDS---DGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFD 66 (112)
T ss_dssp -EEEEEEEET---TSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEE
T ss_pred CEEEEEEecC---CCCcEEEEEEEECCCCcccccccccccccceEEEEEEE
Confidence 3444444443 67899999999876666622 2 2566666777764
No 54
>PF01834 XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002706 DNA-repair protein Xrcc1 functions in the repair of single-strand DNA breaks in mammalian cells and forms a repair complex with beta-Pol, ligase III and PARP []. The NMR solution structure of the Xrcc1 N-terminal domain (Xrcc1 NTD) shows that the structural core is a beta-sandwich with beta-strands connected by loops, three helices and two short two-stranded beta-sheets at each connection side. The Xrcc1 NTD specifically binds single-strand break DNA (gapped and nicked) and a gapped DNA-beta-Pol complex [].; GO: 0003684 damaged DNA binding, 0000012 single strand break repair, 0005634 nucleus; PDB: 3K77_E 3K75_C 3LQC_A 1XNA_A 1XNT_A.
Probab=20.69 E-value=56 Score=25.01 Aligned_cols=91 Identities=9% Similarity=0.127 Sum_probs=48.9
Q ss_pred ceEEecCCCCCCeEEEEEcCCCeEEeEEEEEcccCCCceEEEEEEEEEeC-CC---------cEEEEEece---------
Q 032423 6 YTYWAPEENHSDWTLLINLQEPVSFNVLQVQEPIHMGQRISRFHLDILNE-ER---------KWKKVINGT--------- 66 (141)
Q Consensus 6 ~T~Wa~~~~~~~~~leldL~~~~~fn~V~l~E~i~~gqrI~~f~Ie~~~~-dG---------~W~~ia~Gt--------- 66 (141)
+.|+.++.+++..+++|.|.++..|..|-|-=+ | .--||+... -+ -|..|...+
T Consensus 31 r~W~~~~~gek~~~V~lQl~~~~~I~~IDIGN~---g----SAfiEVlVg~S~~~~~~~~~~f~~Ll~~ssfMsp~eSk~ 103 (153)
T PF01834_consen 31 RKWKCAKAGEKQASVELQLEKASQITSIDIGNE---G----SAFIEVLVGRSSWSSTASDQDFEVLLPSSSFMSPSESKN 103 (153)
T ss_dssp HHEEHSSTT-SEEEEEEEEEEEE--SEEEEEEE---B-----SEEEEEEE-STTS--SSGGGSEEEEEEEESS-HHHHHH
T ss_pred CcccccCCCCceEEEEEEecCceEEEEEeccCC---C----eEEEEEEeeccccccccCCCCcEEEEeccCCcCHHHHhC
Confidence 344445577788899999999999999988732 2 334555431 11 155554332
Q ss_pred eeeeEEEEEcCC---------eeeeEEEEEEEccCC---CceecEEEEE
Q 032423 67 TVGYQRLLQFPT---------VKSQQLRFVIDKSRA---EPLISHLGIY 103 (141)
Q Consensus 67 tIG~kri~~f~~---------Vta~~vRl~i~~s~~---~P~I~ef~vY 103 (141)
.-...|+-.|.+ -.=++|||.+.+.-. .-.|+.+.++
T Consensus 104 ~~n~nrVr~F~~~~l~~~~~~~kWDrvkivC~QPfnk~~~yGLsFi~~~ 152 (153)
T PF01834_consen 104 GTNRNRVRMFGKDKLNKAAAEEKWDRVKIVCSQPFNKHVQYGLSFIKFH 152 (153)
T ss_dssp TSSTTEEEEE-TTTS-HHHHHS-EEEEEEEEE-TS-SSS--EEEEEEEE
T ss_pred cCCcceeEeechhhcChhhhhcCccEEEEEEeCCCCCCCccceEEEEEe
Confidence 123334555542 234689999887643 2466666654
No 55
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=20.63 E-value=64 Score=27.15 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=33.2
Q ss_pred eeeEEEEEcCCeeeeEEEEEEEccCCCceecEEEEEeeccccc
Q 032423 68 VGYQRLLQFPTVKSQQLRFVIDKSRAEPLISHLGIYMDKFSTV 110 (141)
Q Consensus 68 IG~kri~~f~~Vta~~vRl~i~~s~~~P~I~ef~vY~~p~~~~ 110 (141)
.|..+...-.|-..+.+.+.|.+..++|+|.+-|.|..|...+
T Consensus 171 ~~~~~~~~~~p~sl~~~~l~v~s~~~~~~v~~~G~~~iP~~~~ 213 (313)
T PF14688_consen 171 RGGRKFHKDWPESLSDFQLVVESESGPPMVSETGQFIIPSSCP 213 (313)
T ss_pred cCcccccccCccccccceEEEecCCCCCcccCCCcEEeeCCCC
Confidence 3444444334656899999999999999999999999997654
No 56
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=20.41 E-value=6.3e+02 Score=24.09 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=65.7
Q ss_pred EecCC-CCCCeEEEEEcCCCeEEeEEEEEccc--CCCceEE-EEEEEEEeCCC-cEEEEEe----ceeeee--EEEEEcC
Q 032423 9 WAPEE-NHSDWTLLINLQEPVSFNVLQVQEPI--HMGQRIS-RFHLDILNEER-KWKKVIN----GTTVGY--QRLLQFP 77 (141)
Q Consensus 9 Wa~~~-~~~~~~leldL~~~~~fn~V~l~E~i--~~gqrI~-~f~Ie~~~~dG-~W~~ia~----GttIG~--kri~~f~ 77 (141)
|..+. ....-.|.++|.+-..|..|+|-=.- .+|-||- .-.+-... +| .|..-.. +...|. -|-++.|
T Consensus 252 Wrn~s~~~g~vei~FEF~~~rnfs~~~vhtnNmf~k~~ri~~~~~~~f~~-~gk~~~~~~~~~~~~~~~~n~~~R~vrvP 330 (807)
T KOG1094|consen 252 WRNDSFTNGYVEIEFEFDELRNFSAMQVHTNNMFTKGARIFGGVEVRFSG-PGKAFEGEPMRFNLGGDLGNPRARAVRVP 330 (807)
T ss_pred eccccccCCceEEEEEhhhhcccceeEEecccccccccccccceeEEEcc-CcccCCCceeeccCccccCCCccceEEee
Confidence 66653 12234567788888999999987532 3333432 22222223 55 4643322 111111 1334444
Q ss_pred --CeeeeEEEEEEEccCCCceecEEEEEeecccccccCCCccceeeecCceeEEecccc
Q 032423 78 --TVKSQQLRFVIDKSRAEPLISHLGIYMDKFSTVSSMSDSTSQTSLNGSHILQKSMSN 134 (141)
Q Consensus 78 --~Vta~~vRl~i~~s~~~P~I~ef~vY~~p~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 134 (141)
.--|+++|++++-+..=..++|+.--.+.-....+....+.| +-.+-..||+-+..
T Consensus 331 l~nR~ar~~k~~~~F~~dWlf~sEv~F~S~~an~~~~~~~~~~P-~s~~~~~v~~~~~~ 388 (807)
T KOG1094|consen 331 LHNRVARFLKIRFLFAGDWLFFSEVSFISDAANNSLLALGGTFP-ESRGYQPVLKVDGS 388 (807)
T ss_pred ccchhhheeEEEEEcCCceEEEEEEEEeechhhhcchhhcCCCC-CccccceeEEEcCC
Confidence 566889999988766557788876544333333333444444 33444556665543
Done!