BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032425
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C4L9N1|MUTL_TOLAT DNA mismatch repair protein MutL OS=Tolumonas auensis (strain DSM
9187 / TA4) GN=mutL PE=3 SV=1
Length = 594
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 44 RVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAIN 85
RV ACG + F + LR D +G L GWLAP + AIN
Sbjct: 211 RVVQACGAE---FMQAALRIDSEHLGLHLYGWLAPQPLTAIN 249
>sp|A6NHS7|MANS4_HUMAN MANSC domain-containing protein 4 OS=Homo sapiens GN=MANSC4 PE=4
SV=3
Length = 340
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 60 WLR-TDLNVIGFGLIGWLAPSS--IPAINGKSLTGLFFESIGTELAHFPTPPPLTS--QF 114
W R T LN I ++PS+ I + K+++ FFE I T+L+H P PP L S Q
Sbjct: 200 WARFTSLNESITTKINKVSPSTDFISNPDNKTISP-FFEPIDTKLSHMPVPPGLNSSKQL 258
Query: 115 WSVVVGY 121
+ GY
Sbjct: 259 LNKTKGY 265
>sp|Q9ZMH8|Y242_HELPJ Putative zinc metalloprotease jhp_0242 OS=Helicobacter pylori
(strain J99) GN=jhp_0242 PE=3 SV=2
Length = 350
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 73 IGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMA 123
+G L IPA++G + G+ F++I H P P+ + W V VG++
Sbjct: 289 LGILNLLPIPALDGAQMLGVVFKNI----FHIALPTPIQNALWLVGVGFLV 335
>sp|A2BTR9|GCST_PROMS Aminomethyltransferase OS=Prochlorococcus marinus (strain AS9601)
GN=gcvT PE=3 SV=1
Length = 370
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 56 FERD--WLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPT 106
+E D W++ +LN+ + + + A+ GK+ GLF E I + ++H P
Sbjct: 123 YEEDFQWIKNNLNMSEISITNFKKDKVLLALQGKNSFGLFEEWIESSISHIPN 175
>sp|B9DMU3|DNLJ_STACT DNA ligase OS=Staphylococcus carnosus (strain TM300) GN=ligA PE=3
SV=1
Length = 668
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 27 ALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAING 86
++G + V +P A P+RVAG + + D + IG ++ A IP +
Sbjct: 323 SIGRTGVVTPTAVLEPVRVAGTTVSRASLHNEDLIHEKDIRIGDSVVIKKAGDIIPEVI- 381
Query: 87 KSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVV 127
+SL E GTE H PT P + G +ALR +
Sbjct: 382 RSLPDRRPE--GTEPYHMPTHCPSCGHELVRLDGEVALRCI 420
>sp|O22229|TRXB3_ARATH NADPH-dependent thioredoxin reductase 3 OS=Arabidopsis thaliana
GN=NTRC PE=1 SV=2
Length = 529
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 8 SSSPVVGLGSSSLSSPKRTALGSSFVKSP 36
++SP +G+G +S+SSP R + SS + P
Sbjct: 2 AASPKIGIGIASVSSPHRVSAASSALSPP 30
>sp|P56136|Y258_HELPY Putative zinc metalloprotease HP_0258 OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=HP_0258 PE=3 SV=1
Length = 348
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 73 IGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMA 123
+G L IPA++G + G+ F++I H P P+ + W VG++
Sbjct: 287 LGILNLLPIPALDGAQMLGVVFKNI----FHITLPTPIQNALWLAGVGFLV 333
>sp|Q8CRU0|DNLJ_STAES DNA ligase OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=ligA PE=3 SV=1
Length = 665
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 27 ALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAING 86
++G + V +P A P++VAG + + D + IG ++ A IP +
Sbjct: 323 SIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHERDIRIGDSVVIKKAGDIIPEVVK 382
Query: 87 KSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVVPVPHFWANWIQG 139
L ES E+ H PT P + G +ALR + P A I+G
Sbjct: 383 SILDRRPNES---EIYHMPTHCPSCGHELVRIEGEVALRCIN-PKCQAQLIEG 431
>sp|Q5HN30|DNLJ_STAEQ DNA ligase OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=ligA PE=3 SV=1
Length = 665
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 27 ALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAING 86
++G + V +P A P++VAG + + D + IG ++ A IP +
Sbjct: 323 SIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHERDIRIGDSVVIKKAGDIIPEVVK 382
Query: 87 KSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVVPVPHFWANWIQG 139
L ES E+ H PT P + G +ALR + P A I+G
Sbjct: 383 SILDRRPNES---EIYHMPTHCPSCGHELVRIEGEVALRCIN-PKCQAQLIEG 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,484,379
Number of Sequences: 539616
Number of extensions: 2292353
Number of successful extensions: 5401
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5394
Number of HSP's gapped (non-prelim): 18
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)