Query 032425
Match_columns 141
No_of_seqs 28 out of 30
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 22:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gl4_A Nidogen-1, entactin; im 33.9 3.4 0.00011 34.0 -2.4 29 68-96 107-136 (285)
2 2wsc_H Photosystem I reaction 14.2 38 0.0013 26.2 0.0 14 9-22 12-25 (144)
3 1bgf_A STAT-4; transcription f 13.1 33 0.0011 24.9 -0.6 14 128-141 30-43 (124)
4 1zk6_A Foldase protein PRSA; a 12.4 63 0.0022 20.5 0.7 45 69-127 46-91 (93)
5 1jw3_A Conserved hypothetical 9.7 54 0.0018 23.6 -0.4 17 118-134 117-133 (140)
6 1bzk_A Protein (BAND 3 anion t 8.5 1E+02 0.0035 18.8 0.6 12 129-140 3-14 (43)
7 4ain_A Glycine betaine transpo 8.5 1.7E+02 0.0057 26.0 2.2 17 89-105 289-305 (539)
8 4g26_A Pentatricopeptide repea 8.1 80 0.0027 25.9 -0.0 26 94-119 385-411 (501)
9 1g8t_A Nuclease SM2 isoform; e 8.0 75 0.0026 24.1 -0.2 11 125-135 162-173 (245)
10 1avb_A Arcelin-1; lectin-like 7.9 2.1E+02 0.0073 21.7 2.3 78 16-94 20-107 (226)
No 1
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=33.85 E-value=3.4 Score=34.00 Aligned_cols=29 Identities=34% Similarity=0.398 Sum_probs=22.8
Q ss_pred eeeeeeeccccCCCc-ccCCCchhhhhHhh
Q 032425 68 IGFGLIGWLAPSSIP-AINGKSLTGLFFES 96 (141)
Q Consensus 68 ~~~gliGW~aPSsip-a~~g~SL~glF~~S 96 (141)
...|.|||+-.-.+| +.||-||||-=|..
T Consensus 107 ~ig~~igWlfA~e~~~~~NGfslTgG~F~r 136 (285)
T 1gl4_A 107 PIGGIIGWMFAVEQDGFKNGFSITGGEFTR 136 (285)
T ss_dssp HHHHHHHHHTCEECTTCCCHHHHHTTEEEE
T ss_pred hhccceeeeeecccCccccceEeeCceEEE
Confidence 455999999888886 78999999654443
No 2
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=14.21 E-value=38 Score=26.15 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=0.0
Q ss_pred CcceeccccCCCCC
Q 032425 9 SSPVVGLGSSSLSS 22 (141)
Q Consensus 9 ~stV~Glg~ssls~ 22 (141)
+.+|-||++|+++-
T Consensus 12 p~~~kgl~gSs~~G 25 (144)
T 2wsc_H 12 PTTLKGLAGSSIAG 25 (144)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 44567999999983
No 3
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1
Probab=13.14 E-value=33 Score=24.89 Aligned_cols=14 Identities=43% Similarity=0.911 Sum_probs=11.7
Q ss_pred ccchhhhhhccCCC
Q 032425 128 PVPHFWANWIQGQD 141 (141)
Q Consensus 128 ~~~~~~~~~~~~~~ 141 (141)
-|-|+-|+||.+|+
T Consensus 30 EvRhyLA~WIE~q~ 43 (124)
T 1bgf_A 30 EIRHLLAQWIETQD 43 (124)
T ss_dssp HHHHHTHHHHHHSC
T ss_pred HHHHHHHHHHHhcc
Confidence 36799999999885
No 4
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=12.43 E-value=63 Score=20.50 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=23.1
Q ss_pred eeeeeeccc-cCCCcccCCCchhhhhHhhhhhhhcCCCCCCCCCchhHHHHHhhhheeee
Q 032425 69 GFGLIGWLA-PSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVV 127 (141)
Q Consensus 69 ~~gliGW~a-PSsipa~~g~SL~glF~~SIG~eLAhFPtgPal~d~FWL~lvtWH~~~~~ 127 (141)
--|-+||+- ...+|.- =-..+|.-..|+- ++ ++.++| .||++||.
T Consensus 46 ~gG~lg~~~~~~~l~~~---f~~a~~~l~~G~i-----s~-pv~t~~-----G~hIi~v~ 91 (93)
T 1zk6_A 46 KGGDLGWFAKEGQMDET---FSKAAFKLKTGEV-----SD-PVKTQY-----GYHIIKKT 91 (93)
T ss_dssp GTTEEEEECTTTSSCTT---HHHHHHHSCTTCB-----CC-CEECSS-----CEEEEEEE
T ss_pred hCCeeeeecccccCCHH---HHHHHHcCCCCCc-----cc-eEEECC-----EEEEEEEe
Confidence 347889986 6665410 0112333333331 22 344555 79999875
No 5
>1jw3_A Conserved hypothetical protein MTH1598; structural genomics, protein structure initiative, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.208.1.1
Probab=9.73 E-value=54 Score=23.58 Aligned_cols=17 Identities=6% Similarity=0.172 Sum_probs=13.6
Q ss_pred HHhhhheeeeccchhhh
Q 032425 118 VVGYMALRVVPVPHFWA 134 (141)
Q Consensus 118 lvtWH~~~~~~~~~~~~ 134 (141)
-||||.+++.+-+.-|.
T Consensus 117 AvTyh~m~i~~~~~~w~ 133 (140)
T 1jw3_A 117 AVTFHMMEILDEDGLIK 133 (140)
T ss_dssp BCCSCCCEEEEETTEEE
T ss_pred EeeccceEEEEcCCeEE
Confidence 37999999988887663
No 6
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1
Probab=8.55 E-value=1e+02 Score=18.84 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=10.2
Q ss_pred cchhhhhhccCC
Q 032425 129 VPHFWANWIQGQ 140 (141)
Q Consensus 129 ~~~~~~~~~~~~ 140 (141)
.|++|.+|.+|-
T Consensus 3 ~p~Y~SD~~dg~ 14 (43)
T 1bzk_A 3 YPYYLSDITDAF 14 (43)
T ss_dssp CSTTHHHHTTSS
T ss_pred CcccHHHHHHHh
Confidence 589999999874
No 7
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=8.51 E-value=1.7e+02 Score=25.98 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.7
Q ss_pred hhhhhHhhhhhhhcCCC
Q 032425 89 LTGLFFESIGTELAHFP 105 (141)
Q Consensus 89 L~glF~~SIG~eLAhFP 105 (141)
+...|.++||.-|.|||
T Consensus 289 il~~~~~s~G~yl~nf~ 305 (539)
T 4ain_A 289 ILNLLPGSIGNYLSNFF 305 (539)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46889999999999975
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=8.09 E-value=80 Score=25.89 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=17.1
Q ss_pred HhhhhhhhcCCCCCC-CCCchhHHHHH
Q 032425 94 FESIGTELAHFPTPP-PLTSQFWSVVV 119 (141)
Q Consensus 94 ~~SIG~eLAhFPtgP-al~d~FWL~lv 119 (141)
.+.+.++=.=|-|++ .-||.||||--
T Consensus 385 ~~~~~~~~~~~~t~~~s~DD~~~lyAa 411 (501)
T 4g26_A 385 LEKWKNAGALYATPPGSNDDWYWLYAA 411 (501)
T ss_dssp HHHHHHTTCEEEECTTCCHHHHHHHHH
T ss_pred HHHHHhcCeEEeCCCCCCchHHHHHHH
Confidence 444554444477776 56889999963
No 9
>1g8t_A Nuclease SM2 isoform; endonuclease, hydrolase, magnesium, signal; 1.10A {Serratia marcescens} SCOP: d.4.1.2 PDB: 1qae_A 1smn_A 1ql0_A
Probab=8.04 E-value=75 Score=24.11 Aligned_cols=11 Identities=18% Similarity=0.833 Sum_probs=7.6
Q ss_pred eeeccc-hhhhh
Q 032425 125 RVVPVP-HFWAN 135 (141)
Q Consensus 125 ~~~~~~-~~~~~ 135 (141)
+|.||| |||.-
T Consensus 162 ~v~pVP~~f~Kv 173 (245)
T 1g8t_A 162 KAHTIPSAYWKV 173 (245)
T ss_dssp SCCCCCSEEEEE
T ss_pred CeeeCChhheEE
Confidence 566788 78753
No 10
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1
Probab=7.94 E-value=2.1e+02 Score=21.72 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=44.5
Q ss_pred ccCCCCCCCccccccC-----cccCcccccchhhhhccCCCceeeecccc----cccccceeeeeeeeccccCC-CcccC
Q 032425 16 GSSSLSSPKRTALGSS-----FVKSPVAARNPLRVAGACGGKVTCFERDW----LRTDLNVIGFGLIGWLAPSS-IPAIN 85 (141)
Q Consensus 16 g~ssls~~~~~~l~s~-----f~k~~V~aRnpl~~a~a~~gr~t~F~rdW----lr~D~~V~~~gliGW~aPSs-ipa~~ 85 (141)
|.|.+++...++|+.. ...-++--+.|++......|++..|.-.- ........+=||.=|++|.. .|.-.
T Consensus 20 G~A~v~~~g~l~LT~~~~~~~~~~Gra~y~~Pv~l~~~~~g~vaSFsT~F~F~I~~~~~~~~gdGlAF~l~p~~~~p~~~ 99 (226)
T 1avb_A 20 GDATVSSEGHLLLTNVKGNEEDSMGRAFYSAPIQINDRTIDNLASFSTNFTFRINAKNIENSAYGLAFALVPVGSRPKLK 99 (226)
T ss_dssp ETCEECTTSCEECSCSSSCCTTCEEEEEESSCEECEEGGGTEEEEEEEEEEEEEEESSTTSCCEEEEEEEEETTCCCCCC
T ss_pred ccEEECCCCEEEeCCCCCCccCCeEEEEeCCCEEeecCCCCCcccEEEEEEEEEeCCCCCCCCCcEEEEEecCCCCCCCC
Confidence 5555655566777744 23355555677777665566665554432 11122345778888899963 45422
Q ss_pred CCchhhhhH
Q 032425 86 GKSLTGLFF 94 (141)
Q Consensus 86 g~SL~glF~ 94 (141)
| ...|||-
T Consensus 100 g-~~LGl~n 107 (226)
T 1avb_A 100 G-RYLGLFN 107 (226)
T ss_dssp G-GGTTTCS
T ss_pred C-Ccccccc
Confidence 2 3567774
Done!