Query 032425
Match_columns 141
No_of_seqs 28 out of 30
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 22:54:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032425.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032425hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gl4a1 d.22.1.2 (A:399-631) D 18.6 4.4 0.00032 30.7 -2.4 32 65-96 58-90 (233)
2 d2bcgg1 c.3.1.3 (G:5-301) Guan 13.2 14 0.001 21.8 -0.7 15 63-77 6-20 (297)
3 d1lucb_ c.1.16.1 (B:) Bacteria 13.2 21 0.0015 25.2 0.2 43 23-67 66-116 (320)
4 d1d5ta1 c.3.1.3 (A:-2-291,A:38 11.8 16 0.0012 22.1 -0.7 15 63-77 7-21 (336)
5 d1bgfa_ a.90.1.1 (A:) Transcri 11.3 19 0.0014 24.6 -0.6 14 128-141 30-43 (124)
6 d1s5da_ d.166.1.1 (A:) Cholera 10.0 36 0.0026 25.7 0.6 16 100-115 163-179 (235)
7 d1jw3a_ d.208.1.1 (A:) Hypothe 9.7 25 0.0018 23.5 -0.4 17 118-134 117-133 (140)
8 d1nqka_ c.1.16.4 (A:) Alkanesu 9.5 56 0.0041 22.6 1.5 41 22-65 68-116 (362)
9 d1tu1a_ d.107.1.3 (A:) Hypothe 9.5 1.3E+02 0.0094 18.8 3.2 46 54-99 13-63 (144)
10 d1eq3a_ d.26.1.1 (A:) Parvulin 9.0 18 0.0013 22.5 -1.3 48 71-127 45-93 (96)
No 1
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.58 E-value=4.4 Score=30.67 Aligned_cols=32 Identities=31% Similarity=0.307 Sum_probs=24.8
Q ss_pred cceeeeeeeeccccCCCc-ccCCCchhhhhHhh
Q 032425 65 LNVIGFGLIGWLAPSSIP-AINGKSLTGLFFES 96 (141)
Q Consensus 65 ~~V~~~gliGW~aPSsip-a~~g~SL~glF~~S 96 (141)
+.+...|.|||+-=-.+| +.||-||||-=|..
T Consensus 58 ~L~~ig~~igWlFA~e~~~a~NGfslTGG~F~~ 90 (233)
T d1gl4a1 58 PLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTR 90 (233)
T ss_dssp TCTHHHHHHHHHTCEECTTCCCHHHHHTTEEEE
T ss_pred hhhhhcCceeeeEEeecCCccCceEeeeeEEEE
Confidence 356677999999767775 88999999875554
No 2
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.25 E-value=14 Score=21.80 Aligned_cols=15 Identities=27% Similarity=0.467 Sum_probs=11.7
Q ss_pred cccceeeeeeeeccc
Q 032425 63 TDLNVIGFGLIGWLA 77 (141)
Q Consensus 63 ~D~~V~~~gliGW~a 77 (141)
-|+-|||.|+.|-++
T Consensus 6 yDviViGaG~~Gl~~ 20 (297)
T d2bcgg1 6 YDVIVLGTGITECIL 20 (297)
T ss_dssp CSEEEECCSHHHHHH
T ss_pred CCEEEECcCHHHHHH
Confidence 367888999888873
No 3
>d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB {Vibrio harveyi [TaxId: 669]}
Probab=13.16 E-value=21 Score=25.18 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=28.9
Q ss_pred CCccccccCcccCcccccchhhhhc-------cCCCceee-ecccccccccce
Q 032425 23 PKRTALGSSFVKSPVAARNPLRVAG-------ACGGKVTC-FERDWLRTDLNV 67 (141)
Q Consensus 23 ~~~~~l~s~f~k~~V~aRnpl~~a~-------a~~gr~t~-F~rdWlr~D~~V 67 (141)
-+|+.|.++-+..+. |+|++.|+ .|+||+.. +-+-|...+...
T Consensus 66 T~~I~lg~~v~~~~~--~~P~~~A~~~atld~ls~GR~~lG~g~G~~~~~~~~ 116 (320)
T d1lucb_ 66 TKNAKVASLNHVITT--HHPVRVAEEACLLDQMSEGRFAFGFSDCEKSADMRF 116 (320)
T ss_dssp CSSSEEEEEEEECTT--SCHHHHHHHHHHHHHHTTSCEEEEEECCCCHHHHHH
T ss_pred cccceeeeeeccCcc--CChHHHHHHHHHHHHhcCCCceeeeecccccccccc
Confidence 568888888766554 89998874 58898875 555554444433
No 4
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.83 E-value=16 Score=22.13 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.7
Q ss_pred cccceeeeeeeeccc
Q 032425 63 TDLNVIGFGLIGWLA 77 (141)
Q Consensus 63 ~D~~V~~~gliGW~a 77 (141)
=|+.|||.|..|.++
T Consensus 7 yDvvIIGaG~aGl~a 21 (336)
T d1d5ta1 7 YDVIVLGTGLTECIL 21 (336)
T ss_dssp CSEEEECCSHHHHHH
T ss_pred CCEEEECCCHHHHHH
Confidence 478999999999874
No 5
>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.33 E-value=19 Score=24.57 Aligned_cols=14 Identities=43% Similarity=0.911 Sum_probs=11.8
Q ss_pred ccchhhhhhccCCC
Q 032425 128 PVPHFWANWIQGQD 141 (141)
Q Consensus 128 ~~~~~~~~~~~~~~ 141 (141)
-|-|+-|+||..||
T Consensus 30 EVRhyLA~WIE~Q~ 43 (124)
T d1bgfa_ 30 EIRHLLAQWIETQD 43 (124)
T ss_dssp HHHHHTHHHHHHSC
T ss_pred HHHHHHHHHHHhCC
Confidence 46799999999886
No 6
>d1s5da_ d.166.1.1 (A:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Probab=10.02 E-value=36 Score=25.70 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=11.4
Q ss_pred hhcCCCCC-CCCCchhH
Q 032425 100 ELAHFPTP-PPLTSQFW 115 (141)
Q Consensus 100 eLAhFPtg-Pal~d~FW 115 (141)
+||+||.+ ||-.+.+|
T Consensus 163 qla~f~~~~paw~~~~~ 179 (235)
T d1s5da_ 163 GLAGFPPEHRAWREEPW 179 (235)
T ss_dssp GGCCCCTTCGGGGSTTG
T ss_pred hhccCCCCCcccccccc
Confidence 99999985 55555555
No 7
>d1jw3a_ d.208.1.1 (A:) Hypothetical protein MTH1598 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.75 E-value=25 Score=23.52 Aligned_cols=17 Identities=6% Similarity=0.172 Sum_probs=13.4
Q ss_pred HHhhhheeeeccchhhh
Q 032425 118 VVGYMALRVVPVPHFWA 134 (141)
Q Consensus 118 lvtWH~~~~~~~~~~~~ 134 (141)
-||||.+|+.+-...|.
T Consensus 117 AvTyh~l~v~~~~~~w~ 133 (140)
T d1jw3a_ 117 AVTFHMMEILDEDGLIK 133 (140)
T ss_dssp BCCSCCCEEEEETTEEE
T ss_pred eeecccEEEEEeCCeEE
Confidence 47999999988777663
No 8
>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD {Escherichia coli [TaxId: 562]}
Probab=9.48 E-value=56 Score=22.63 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=27.1
Q ss_pred CCCccccccCcccCcccccchhhhhc-------cCCCceee-eccccccccc
Q 032425 22 SPKRTALGSSFVKSPVAARNPLRVAG-------ACGGKVTC-FERDWLRTDL 65 (141)
Q Consensus 22 ~~~~~~l~s~f~k~~V~aRnpl~~a~-------a~~gr~t~-F~rdWlr~D~ 65 (141)
.-+|+.|.++-. + .-|+|+++|+ .|+||+.. +-+-|...+.
T Consensus 68 ~T~rI~lgt~V~-~--~~~~P~~~A~~~AtLd~lS~GR~~lGlG~G~~~~e~ 116 (362)
T d1nqka_ 68 VTQRLKFLVALR-P--SVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQEL 116 (362)
T ss_dssp TCSSCEEEEEEC-T--TTSCHHHHHHHHHHHHHHTTSCEEEEECCCCCHHHH
T ss_pred HcCeeEEEEEEc-C--CCCChHHHHHHHHHHHHHcCCCceeEEeecccHHHH
Confidence 356888887743 3 3489999884 57898876 5555544433
No 9
>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.46 E-value=1.3e+02 Score=18.82 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=28.9
Q ss_pred eeecccccccccceeeeeeeeccccCCC-----cccCCCchhhhhHhhhhh
Q 032425 54 TCFERDWLRTDLNVIGFGLIGWLAPSSI-----PAINGKSLTGLFFESIGT 99 (141)
Q Consensus 54 t~F~rdWlr~D~~V~~~gliGW~aPSsi-----pa~~g~SL~glF~~SIG~ 99 (141)
..++++|+.+..||+.++--+=-.|.|| +.-.|.+|...+-..+..
T Consensus 13 ~~lP~gw~d~t~ni~~~~~~~~~~~~~lvIsr~~l~~~~~l~~~~~~~~~~ 63 (144)
T d1tu1a_ 13 LEIPDAWQDQSINIFKLPASGPAREASFVISRDASQGDAPFADYVARQLEN 63 (144)
T ss_dssp EEEETTSEECCBEEEEECCBTTBCCEEEEEEEECCCTTSCHHHHHHHHHHH
T ss_pred EeCCCCceeCcceEEEecCCCCCcceEEEEEeecCCCCCCHHHHHHHHHHH
Confidence 3679999999888876543221222222 555788887766665543
No 10
>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}
Probab=9.03 E-value=18 Score=22.53 Aligned_cols=48 Identities=25% Similarity=0.475 Sum_probs=28.1
Q ss_pred eeeeccccCCCc-ccCCCchhhhhHhhhhhhhcCCCCCCCCCchhHHHHHhhhheeee
Q 032425 71 GLIGWLAPSSIP-AINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVV 127 (141)
Q Consensus 71 gliGW~aPSsip-a~~g~SL~glF~~SIG~eLAhFPtgPal~d~FWL~lvtWH~~~~~ 127 (141)
|-+||+-+..+| .| -..+|.-..|+-..-.++.+++.++| .||+++|.
T Consensus 45 G~lG~~~~~~l~~ef----~~a~f~l~~g~is~~~~~~~pi~T~~-----G~HIikv~ 93 (96)
T d1eq3a_ 45 GDLGWMTRGSMVGPF----QEAAFALPVSGMDKPVFTDPPVKTKF-----GYHIIMVE 93 (96)
T ss_dssp SEEEEESSCCSSSHH----HHHHHHCCSCCSSTTTBCSSCEEETT-----EEEEEEEE
T ss_pred cccceechHHhhHHH----HHHHHhCCCCcCccccccCCCEecCC-----eEEEEEEe
Confidence 668999877663 22 12344444444443344455666664 68998874
Done!