BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032426
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LM71|FKB18_ARATH Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic
OS=Arabidopsis thaliana GN=FKBP18 PE=1 SV=2
Length = 232
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 76/116 (65%), Gaps = 12/116 (10%)
Query: 1 MASIRSFGKWTVD-HQICPQHTTI-QAKQA-------VVSIPISRRAAAI-LISSLPFS- 49
MASI S +W + H P+ T+I +A Q+ S+PISRR A+I L+SS+P +
Sbjct: 1 MASISSLHRWASNQHSRLPRITSISEADQSRPINQVVAFSVPISRRDASIILLSSIPLTS 60
Query: 50 -VISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVGLN 104
+ P SEARERR++K IPLE+Y T +GLK+YDI EGKGPVA +GST QV +
Sbjct: 61 FFVLTPSSSEARERRSRKVIPLEEYSTGPEGLKFYDIEEGKGPVATEGSTAQVHFD 116
>sp|Q9SR70|FK164_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic
OS=Arabidopsis thaliana GN=FKBP16-4 PE=1 SV=1
Length = 230
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 48 FSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQV------ 101
S S S +R +P D+ T +GLKYYDI G G A KGS V V
Sbjct: 75 LSTGSAEAVSTSRRALRASKLPESDFTTLPNGLKYYDIKVGNGAEAVKGSRVAVHYVAKW 134
Query: 102 -GLNFKVEFQRYII---IVFTFSVVLP-RTNVTRHLNCGVE 137
G+ F Q + + F V R NV + L+ GVE
Sbjct: 135 KGITFMTSRQGLGVGGGTPYGFDVGQSERGNVLKGLDLGVE 175
>sp|Q9LYR5|FKB19_ARATH Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic
OS=Arabidopsis thaliana GN=FKBP19 PE=1 SV=1
Length = 256
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 64 NKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQV 101
K + DY T GL+Y D+ G GP+A+KG V V
Sbjct: 103 GKTKMKYPDYTETQSGLQYKDLRVGTGPIAKKGDKVVV 140
>sp|A1JTY5|MAO1_YERE8 NAD-dependent malic enzyme OS=Yersinia enterocolitica serotype O:8
/ biotype 1B (strain 8081) GN=maeA PE=3 SV=1
Length = 565
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 37 RAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKG 96
RA ++ LP + + + +K+ L+ ++ TSD + D+V P G
Sbjct: 329 RARVFMVDRFGLLTDKLPNLLDFQSKLVQKSDALQSWNLTSDSISLQDVVRNAKPTVLIG 388
Query: 97 STVQVGLNFKVEFQRYIIIVFTFSVVLPRTNVT 129
+ Q GL F E R + +V+P +N T
Sbjct: 389 VSGQPGL-FTEELIREMHKHCARPIVMPLSNPT 420
>sp|Q96L08|SUSD3_HUMAN Sushi domain-containing protein 3 OS=Homo sapiens GN=SUSD3 PE=2
SV=1
Length = 255
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 6 SFGKWTVDHQIC---PQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARER 62
S +W+ +C P H T K AV++ +S A IL+ S+ F L KC + +R
Sbjct: 80 SIAEWSSGSPVCKLVPPHETFGFKVAVIASIVS--CAIILLMSMAFLTCCLLKCVKKSKR 137
Query: 63 R--NKKA-----IPLEDYHTTSD---GLKYYD 84
R N+ A + ED T GLK+++
Sbjct: 138 RRSNRSAQLWSQLKDEDLETVQAAYLGLKHFN 169
>sp|Q9D176|SUSD3_MOUSE Sushi domain-containing protein 3 OS=Mus musculus GN=Susd3 PE=2
SV=1
Length = 269
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 9 KWTVDHQIC---PQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERR 63
W+ +C P H T K AV++ +S A IL+ S+ F L KC + ERR
Sbjct: 83 DWSSGSPVCKAVPPHETFGFKVAVIASIVS--CAIILLMSMAFLTCCLLKCVQKNERR 138
>sp|Q9YDY0|RS8E_AERPE 30S ribosomal protein S8e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps8e
PE=3 SV=1
Length = 136
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 18 PQHTTIQAKQAVVSIPISRRAAAILISS--LPFSVISLPKCSEARERR 63
P +TT+ A + P+ R + I + + F+V+S PK EAR+ R
Sbjct: 33 PTYTTLSAAEEEERKPVRARGGSYKIKAKKVAFAVVSNPKTGEARKAR 80
>sp|B2VIF2|MAO1_ERWT9 NAD-dependent malic enzyme OS=Erwinia tasmaniensis (strain DSM
17950 / Et1/99) GN=maeA PE=3 SV=1
Length = 565
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 37 RAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKG 96
RA ++ LP + R +K+ L + + +D L D+V P G
Sbjct: 329 RARVFMVDRFGLLTDRLPNLLNFQSRLVQKSDSLSGWDSANDSLSLLDVVRNAKPDIMIG 388
Query: 97 STVQVGLNFKVEFQRYIIIVFTFSVVLPRTNVT 129
+ Q GL F E R + T +++P +N T
Sbjct: 389 VSGQPGL-FSEEIVREMHKHCTRPIIMPLSNPT 420
>sp|P77947|MASY_STRAE Malate synthase OS=Streptomyces arenae GN=aceB PE=1 SV=1
Length = 543
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 46 LPFSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVGLNF 105
+P ++ S +C R N+K ED H + L D +E + VQVG+ +
Sbjct: 380 VPIAMESFDRC---WHRPNQKDRLREDVHVEAADLIAVDSLEATTYAGSSSTAVQVGIRY 436
Query: 106 KVEFQRYIIIVFTFSVV-------LPRTNVTRHLNCGVE 137
+ R + V F+++ + R+ + + +N GVE
Sbjct: 437 IEAWLRGLGRVAIFNLMEDAATAEISRSQIWQWINAGVE 475
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,209,688
Number of Sequences: 539616
Number of extensions: 1727144
Number of successful extensions: 3370
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3365
Number of HSP's gapped (non-prelim): 12
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)