Query 032426
Match_columns 141
No_of_seqs 154 out of 1095
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 13:56:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 99.8 1.8E-19 3.9E-24 144.9 8.1 70 65-140 88-165 (205)
2 KOG0544 FKBP-type peptidyl-pro 99.8 1E-18 2.2E-23 126.8 6.6 58 79-140 2-68 (108)
3 KOG0552 FKBP-type peptidyl-pro 99.7 2E-17 4.3E-22 134.9 6.8 64 74-140 116-187 (226)
4 PRK11570 peptidyl-prolyl cis-t 99.5 1.3E-14 2.9E-19 116.3 7.5 67 67-139 91-165 (206)
5 TIGR03516 ppisom_GldI peptidyl 99.5 8.5E-14 1.8E-18 109.4 7.9 68 68-139 59-135 (177)
6 PRK10902 FKBP-type peptidyl-pr 99.5 1.3E-13 2.9E-18 114.7 7.2 67 67-139 135-209 (269)
7 KOG0549 FKBP-type peptidyl-pro 99.5 9.5E-14 2.1E-18 110.4 5.7 60 77-140 67-136 (188)
8 KOG0543 FKBP-type peptidyl-pro 98.9 1.3E-09 2.8E-14 95.2 4.5 50 86-139 1-58 (397)
9 PF00254 FKBP_C: FKBP-type pep 98.9 3.3E-09 7.2E-14 73.3 5.4 45 92-140 4-56 (94)
10 PRK15095 FKBP-type peptidyl-pr 98.7 2.9E-08 6.3E-13 76.6 5.4 44 92-139 4-55 (156)
11 KOG0543 FKBP-type peptidyl-pro 98.0 1.4E-05 3E-10 70.3 6.2 58 77-139 83-148 (397)
12 COG1047 SlpA FKBP-type peptidy 97.8 3.3E-05 7.1E-10 61.3 5.4 44 92-139 2-53 (174)
13 PRK10737 FKBP-type peptidyl-pr 97.7 7.8E-05 1.7E-09 60.0 5.0 44 93-140 3-53 (196)
14 COG0544 Tig FKBP-type peptidyl 97.4 0.00016 3.4E-09 64.3 4.5 42 93-139 158-205 (441)
15 PRK01490 tig trigger factor; P 97.4 0.00021 4.5E-09 62.2 5.0 44 92-140 157-206 (435)
16 TIGR00115 tig trigger factor. 97.3 0.00024 5.2E-09 61.2 4.5 45 91-140 145-195 (408)
17 PF01346 FKBP_N: Domain amino 78.5 1.7 3.6E-05 31.3 2.1 17 68-84 108-124 (124)
18 KOG0545 Aryl-hydrocarbon recep 74.8 2.7 5.8E-05 36.2 2.6 62 77-140 9-80 (329)
19 PF09340 NuA4: Histone acetylt 43.6 10 0.00022 26.3 0.6 14 124-137 38-51 (80)
20 PF08255 Leader_Trp: Trp-opero 43.6 8.9 0.00019 18.7 0.2 11 1-11 1-11 (14)
21 PLN00044 multi-copper oxidase- 41.8 17 0.00037 33.8 2.0 34 74-107 38-78 (596)
22 TIGR03096 nitroso_cyanin nitro 31.9 39 0.00086 25.8 2.2 30 75-104 40-76 (135)
23 PF07076 DUF1344: Protein of u 31.6 93 0.002 20.8 3.7 33 73-105 18-50 (61)
24 cd07691 Ig_CD3_gamma_delta Imm 28.9 83 0.0018 21.5 3.2 35 66-105 33-67 (69)
25 PHA02122 hypothetical protein 26.0 1.2E+02 0.0025 20.4 3.4 18 95-117 40-57 (65)
26 PF13670 PepSY_2: Peptidase pr 24.6 1.9E+02 0.0041 19.2 4.4 41 78-130 41-81 (83)
27 PF14444 S1-like: S1-like 24.4 1E+02 0.0022 20.5 2.9 21 82-102 23-43 (58)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.8e-19 Score=144.86 Aligned_cols=70 Identities=24% Similarity=0.250 Sum_probs=63.4
Q ss_pred ccCCCCCCceeCCCCcEEEEeecCCCCCCCCCCEEEEEEEEEEeeccccceEEE--------EEEecCCCceecChHHHh
Q 032426 65 KKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVGLNFKVEFQRYIIIVFT--------FSVVLPRTNVTRHLNCGV 136 (141)
Q Consensus 65 ~~~~~~~~~~t~psGL~y~dl~~G~G~~p~~Gd~V~VhY~G~l~~~~~~G~~Fd--------f~f~~g~G~VIkGwDeGv 136 (141)
.++....++.+++|||+|.++++|+|+.|++|++|+|||+|+|.| |++|| |.|+++ +||+|||||+
T Consensus 88 ~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~----G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl 161 (205)
T COG0545 88 EKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLID----GTVFDSSYDRGQPAEFPLG--GVIPGWDEGL 161 (205)
T ss_pred hhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCC----CCccccccccCCCceeecC--CeeehHHHHH
Confidence 345566778999999999999999999999999999999999997 99999 888875 9999999999
Q ss_pred cccc
Q 032426 137 ETQI 140 (141)
Q Consensus 137 ~gm~ 140 (141)
++|=
T Consensus 162 ~~M~ 165 (205)
T COG0545 162 QGMK 165 (205)
T ss_pred hhCC
Confidence 9993
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1e-18 Score=126.75 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=54.8
Q ss_pred CcEEEEeecCCCC-CCCCCCEEEEEEEEEEeeccccceEEE--------EEEecCCCceecChHHHhcccc
Q 032426 79 GLKYYDIVEGKGP-VAQKGSTVQVGLNFKVEFQRYIIIVFT--------FSVVLPRTNVTRHLNCGVETQI 140 (141)
Q Consensus 79 GL~y~dl~~G~G~-~p~~Gd~V~VhY~G~l~~~~~~G~~Fd--------f~f~~g~G~VIkGwDeGv~gm~ 140 (141)
|+....|..|+|. .|++||+|+|||+|.|.| |++|| |.|++|.|+||||||||+.+|-
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~d----G~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qms 68 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQD----GKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMS 68 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecC----CcEeecccccCCCeeEEecCcceeechhhcchhcc
Confidence 7889999999995 699999999999999996 99999 9999999999999999999994
No 3
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2e-17 Score=134.94 Aligned_cols=64 Identities=34% Similarity=0.418 Sum_probs=60.1
Q ss_pred eeCCCCcEEEEeecCCCCCCCCCCEEEEEEEEEEeeccccceEEE-------EE-EecCCCceecChHHHhcccc
Q 032426 74 HTTSDGLKYYDIVEGKGPVAQKGSTVQVGLNFKVEFQRYIIIVFT-------FS-VVLPRTNVTRHLNCGVETQI 140 (141)
Q Consensus 74 ~t~psGL~y~dl~~G~G~~p~~Gd~V~VhY~G~l~~~~~~G~~Fd-------f~-f~~g~G~VIkGwDeGv~gm~ 140 (141)
.++++||+|+|++.|+|+.|++|++|.|||.|++.. .|++|| |. |++|.|+||+|||.||.||=
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~---~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMk 187 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKG---NGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMK 187 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecC---CCeEeecccCCCCccccccCCCCCCchHHHhhhhhc
Confidence 578999999999999999999999999999999983 389998 77 99999999999999999993
No 4
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.54 E-value=1.3e-14 Score=116.34 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=60.1
Q ss_pred CCCCCCceeCCCCcEEEEeecCCCCCCCCCCEEEEEEEEEEeeccccceEEE--------EEEecCCCceecChHHHhcc
Q 032426 67 AIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVGLNFKVEFQRYIIIVFT--------FSVVLPRTNVTRHLNCGVET 138 (141)
Q Consensus 67 ~~~~~~~~t~psGL~y~dl~~G~G~~p~~Gd~V~VhY~G~l~~~~~~G~~Fd--------f~f~~g~G~VIkGwDeGv~g 138 (141)
+...++++++||||+|+++++|+|+.|+.||+|.|||+|++.| |++|| +.|.+ ++||+||++++.+
T Consensus 91 ~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~d----G~vfdss~~~g~P~~f~l--~~vipG~~eaL~~ 164 (206)
T PRK11570 91 NAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLID----GTVFDSSVARGEPAEFPV--NGVIPGWIEALTL 164 (206)
T ss_pred hhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECC----CCEEEeccCCCCCeEEEe--echhhHHHHHHcC
Confidence 4456789999999999999999999999999999999999986 88887 56666 5799999999999
Q ss_pred c
Q 032426 139 Q 139 (141)
Q Consensus 139 m 139 (141)
|
T Consensus 165 M 165 (206)
T PRK11570 165 M 165 (206)
T ss_pred C
Confidence 8
No 5
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.49 E-value=8.5e-14 Score=109.40 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=61.3
Q ss_pred CCCCCceeCCCCcEEEEeec--CCCCCCCCCCEEEEEEEEEEeeccccceEEE-------EEEecCCCceecChHHHhcc
Q 032426 68 IPLEDYHTTSDGLKYYDIVE--GKGPVAQKGSTVQVGLNFKVEFQRYIIIVFT-------FSVVLPRTNVTRHLNCGVET 138 (141)
Q Consensus 68 ~~~~~~~t~psGL~y~dl~~--G~G~~p~~Gd~V~VhY~G~l~~~~~~G~~Fd-------f~f~~g~G~VIkGwDeGv~g 138 (141)
.+...+.++++|++|+++++ |+|..|+.||.|++||+|++.| |++|| +.|.+|.+++|+||++|+.+
T Consensus 59 ~~~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~d----G~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~ 134 (177)
T TIGR03516 59 DSIVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALD----GDVIYSEEELGPQTYKVDQQDLFSGLRDGLKL 134 (177)
T ss_pred CCCCCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCC----CCEEEeCCCCCCEEEEeCCcchhHHHHHHHcC
Confidence 46677899999999999976 7778999999999999999996 88887 78888999999999999999
Q ss_pred c
Q 032426 139 Q 139 (141)
Q Consensus 139 m 139 (141)
|
T Consensus 135 M 135 (177)
T TIGR03516 135 M 135 (177)
T ss_pred C
Confidence 8
No 6
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.46 E-value=1.3e-13 Score=114.72 Aligned_cols=67 Identities=24% Similarity=0.157 Sum_probs=59.0
Q ss_pred CCCCCCceeCCCCcEEEEeecCCCCCCCCCCEEEEEEEEEEeeccccceEEE--------EEEecCCCceecChHHHhcc
Q 032426 67 AIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVGLNFKVEFQRYIIIVFT--------FSVVLPRTNVTRHLNCGVET 138 (141)
Q Consensus 67 ~~~~~~~~t~psGL~y~dl~~G~G~~p~~Gd~V~VhY~G~l~~~~~~G~~Fd--------f~f~~g~G~VIkGwDeGv~g 138 (141)
+....++++++|||+|+++++|+|+.|+.||.|.|||+|++.| |++|| +.|. .+++|+||++++.+
T Consensus 135 ~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~d----G~vfdss~~~g~p~~f~--l~~vipG~~EaL~~ 208 (269)
T PRK10902 135 FAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLID----GKEFDNSYTRGEPLSFR--LDGVIPGWTEGLKN 208 (269)
T ss_pred hccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCC----CCEeeccccCCCceEEe--cCCcchHHHHHHhc
Confidence 3456789999999999999999999999999999999999985 88887 3444 46899999999999
Q ss_pred c
Q 032426 139 Q 139 (141)
Q Consensus 139 m 139 (141)
|
T Consensus 209 M 209 (269)
T PRK10902 209 I 209 (269)
T ss_pred C
Confidence 8
No 7
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=9.5e-14 Score=110.42 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=50.7
Q ss_pred CCCcEEEEeec--CCCCCCCCCCEEEEEEEEEEeeccccceEEE--------EEEecCCCceecChHHHhcccc
Q 032426 77 SDGLKYYDIVE--GKGPVAQKGSTVQVGLNFKVEFQRYIIIVFT--------FSVVLPRTNVTRHLNCGVETQI 140 (141)
Q Consensus 77 psGL~y~dl~~--G~G~~p~~Gd~V~VhY~G~l~~~~~~G~~Fd--------f~f~~g~G~VIkGwDeGv~gm~ 140 (141)
.++|++.+++. .-..++++||++.+||+|.+.| |++|| |.|++|.||||||||+|+.||.
T Consensus 67 ~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leD----Gt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMC 136 (188)
T KOG0549|consen 67 DEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLED----GTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMC 136 (188)
T ss_pred CCceeEEEEECCccccccccCCCEEEEEEEEEecC----CCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhC
Confidence 34556655554 2456789999999999999996 99998 9999999999999999999995
No 8
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.3e-09 Score=95.25 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=46.7
Q ss_pred ecCCCC-CCCCCCEEEEEEEEEEeeccccceEEE-------EEEecCCCceecChHHHhccc
Q 032426 86 VEGKGP-VAQKGSTVQVGLNFKVEFQRYIIIVFT-------FSVVLPRTNVTRHLNCGVETQ 139 (141)
Q Consensus 86 ~~G~G~-~p~~Gd~V~VhY~G~l~~~~~~G~~Fd-------f~f~~g~G~VIkGwDeGv~gm 139 (141)
++|+|. .|..|++|.|||+|+|.| |++|| |.|.+|.|+||+|||+|+..|
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~d----gt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm 58 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLD----GTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATM 58 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecC----CeecccccCCCceeeecCCCccccccccccccc
Confidence 478896 699999999999999996 99998 999999999999999999998
No 9
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=98.89 E-value=3.3e-09 Score=73.27 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=41.2
Q ss_pred CCCCCCEEEEEEEEEEeeccccceEEE--------EEEecCCCceecChHHHhcccc
Q 032426 92 VAQKGSTVQVGLNFKVEFQRYIIIVFT--------FSVVLPRTNVTRHLNCGVETQI 140 (141)
Q Consensus 92 ~p~~Gd~V~VhY~G~l~~~~~~G~~Fd--------f~f~~g~G~VIkGwDeGv~gm~ 140 (141)
+|+.||+|++||++++.+ |+.|+ |.|.+|.+++|+||++++.+|-
T Consensus 4 ~~~~gd~V~i~y~~~~~~----g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~ 56 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLED----GKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMK 56 (94)
T ss_dssp SBSTTSEEEEEEEEEETT----SEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSB
T ss_pred cCCCCCEEEEEEEEEECC----CcEEEEeeecCcceeeeeccCccccchhhhccccc
Confidence 499999999999999974 78887 8899999999999999999994
No 10
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.69 E-value=2.9e-08 Score=76.56 Aligned_cols=44 Identities=16% Similarity=0.030 Sum_probs=40.5
Q ss_pred CCCCCCEEEEEEEEEEeeccccceEEE--------EEEecCCCceecChHHHhccc
Q 032426 92 VAQKGSTVQVGLNFKVEFQRYIIIVFT--------FSVVLPRTNVTRHLNCGVETQ 139 (141)
Q Consensus 92 ~p~~Gd~V~VhY~G~l~~~~~~G~~Fd--------f~f~~g~G~VIkGwDeGv~gm 139 (141)
++++|+.|++||++++.| |++|| +.|.+|.|++|+||++++.||
T Consensus 4 ~i~~~~~V~v~Y~~~~~d----G~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm 55 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDD----GSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGL 55 (156)
T ss_pred ccCCCCEEEEEEEEEeCC----CCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCC
Confidence 578999999999999985 88887 788999999999999999998
No 11
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.4e-05 Score=70.30 Aligned_cols=58 Identities=28% Similarity=0.308 Sum_probs=52.0
Q ss_pred CCCcEEEEeecCCC--CCCCCCCEEEEEEEEEEeeccccceEEE-----EEEecCC-CceecChHHHhccc
Q 032426 77 SDGLKYYDIVEGKG--PVAQKGSTVQVGLNFKVEFQRYIIIVFT-----FSVVLPR-TNVTRHLNCGVETQ 139 (141)
Q Consensus 77 psGL~y~dl~~G~G--~~p~~Gd~V~VhY~G~l~~~~~~G~~Fd-----f~f~~g~-G~VIkGwDeGv~gm 139 (141)
..+|..+++++|.| ..|..|..|.|||.|++.| .+|+ |.|..|. ..||.|||.+|..|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~-----~~f~~~~~~fe~~~Ge~~~vi~Gle~al~~M 148 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELED-----GVFDQRELRFEFGEGEDIDVIEGLEIALRMM 148 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECC-----cceeccccceEEecCCccchhHHHHHHHHhc
Confidence 78999999999999 5799999999999999995 3777 8888887 57999999999988
No 12
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=3.3e-05 Score=61.29 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=39.8
Q ss_pred CCCCCCEEEEEEEEEEeeccccceEEE--------EEEecCCCceecChHHHhccc
Q 032426 92 VAQKGSTVQVGLNFKVEFQRYIIIVFT--------FSVVLPRTNVTRHLNCGVETQ 139 (141)
Q Consensus 92 ~p~~Gd~V~VhY~G~l~~~~~~G~~Fd--------f~f~~g~G~VIkGwDeGv~gm 139 (141)
+..+|+.|++||++++.| |.+|| +.|.+|.|++|+|+|+++.||
T Consensus 2 ~i~k~~~V~i~Y~~~~~d----g~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~ 53 (174)
T COG1047 2 KIEKGDVVSLHYTLKVED----GEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGK 53 (174)
T ss_pred cccCCCEEEEEEEEEecC----CcEEEcccccCCCeEEEecCCCcchhHHHHHhCC
Confidence 357899999999999996 88888 678899999999999999998
No 13
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=97.65 E-value=7.8e-05 Score=59.99 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=39.7
Q ss_pred CCCCCEEEEEEEEEEeeccccceEEE-------EEEecCCCceecChHHHhcccc
Q 032426 93 AQKGSTVQVGLNFKVEFQRYIIIVFT-------FSVVLPRTNVTRHLNCGVETQI 140 (141)
Q Consensus 93 p~~Gd~V~VhY~G~l~~~~~~G~~Fd-------f~f~~g~G~VIkGwDeGv~gm~ 140 (141)
.++++.|++||+.++.+ |.+|| +.|.+|.+++|+|++++|.||-
T Consensus 3 I~~~~vV~l~Y~l~~~d----G~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~ 53 (196)
T PRK10737 3 VAKDLVVSLAYQVRTED----GVLVDESPVSAPLDYLHGHGSLISGLETALEGHE 53 (196)
T ss_pred cCCCCEEEEEEEEEeCC----CCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCC
Confidence 57899999999999985 78887 7889999999999999999983
No 14
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00016 Score=64.30 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=38.1
Q ss_pred CCCCCEEEEEEEEEEeeccccceEEE------EEEecCCCceecChHHHhccc
Q 032426 93 AQKGSTVQVGLNFKVEFQRYIIIVFT------FSVVLPRTNVTRHLNCGVETQ 139 (141)
Q Consensus 93 p~~Gd~V~VhY~G~l~~~~~~G~~Fd------f~f~~g~G~VIkGwDeGv~gm 139 (141)
++.||.|+++|.|+.. |..|. |.+.+|.|++|+||+.++.||
T Consensus 158 a~~gD~v~IDf~g~iD-----g~~fegg~ae~~~l~lGs~~fipgFe~~LvG~ 205 (441)
T COG0544 158 AENGDRVTIDFEGSVD-----GEEFEGGKAENFSLELGSGRFIPGFEDQLVGM 205 (441)
T ss_pred cccCCEEEEEEEEEEc-----CeeccCccccCeEEEEcCCCchhhHHhhhccC
Confidence 8899999999999654 66665 999999999999999999998
No 15
>PRK01490 tig trigger factor; Provisional
Probab=97.42 E-value=0.00021 Score=62.17 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=38.9
Q ss_pred CCCCCCEEEEEEEEEEeeccccceEEE------EEEecCCCceecChHHHhcccc
Q 032426 92 VAQKGSTVQVGLNFKVEFQRYIIIVFT------FSVVLPRTNVTRHLNCGVETQI 140 (141)
Q Consensus 92 ~p~~Gd~V~VhY~G~l~~~~~~G~~Fd------f~f~~g~G~VIkGwDeGv~gm~ 140 (141)
.++.||.|.+||+|+.. |..|+ |.|.+|.+++|+||++++.||-
T Consensus 157 ~~~~gD~V~vd~~~~~~-----g~~~~~~~~~~~~~~lg~~~~~~~fee~L~G~k 206 (435)
T PRK01490 157 PAENGDRVTIDFVGSID-----GEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMK 206 (435)
T ss_pred cCCCCCEEEEEEEEEEC-----CEECcCCCCCceEEEEcCCCcchhHHHHhCCCC
Confidence 47899999999999984 66665 8899999999999999999983
No 16
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=97.35 E-value=0.00024 Score=61.20 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=38.5
Q ss_pred CCCCCCCEEEEEEEEEEeeccccceEEE------EEEecCCCceecChHHHhcccc
Q 032426 91 PVAQKGSTVQVGLNFKVEFQRYIIIVFT------FSVVLPRTNVTRHLNCGVETQI 140 (141)
Q Consensus 91 ~~p~~Gd~V~VhY~G~l~~~~~~G~~Fd------f~f~~g~G~VIkGwDeGv~gm~ 140 (141)
..++.||.|.|||+|+.. |..|+ +.|.+|.+++|+||++++.||-
T Consensus 145 ~~~~~gD~V~v~~~~~~d-----g~~~~~~~~~~~~~~lg~~~~~~~~ee~L~G~k 195 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFID-----GEAFEGGKAENFSLELGSGQFIPGFEEQLVGMK 195 (408)
T ss_pred cccCCCCEEEEEEEEEEC-----CEECcCCCCCCeEEEECCCCcchhHHHHhCCCC
Confidence 357889999999999763 66665 8889999999999999999983
No 17
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=78.52 E-value=1.7 Score=31.33 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=12.4
Q ss_pred CCCCCceeCCCCcEEEE
Q 032426 68 IPLEDYHTTSDGLKYYD 84 (141)
Q Consensus 68 ~~~~~~~t~psGL~y~d 84 (141)
...+++++++|||+|++
T Consensus 108 ~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 108 AKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HTSTTEEE-TTS-EEEE
T ss_pred cCCCCCEECCCCCeeeC
Confidence 35578999999999985
No 18
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.76 E-value=2.7 Score=36.16 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=43.4
Q ss_pred CCCcEEEEeecCCCCCC--CCCCEEEEEEEEEEeeccccceEEE--------EEEecCCCceecChHHHhcccc
Q 032426 77 SDGLKYYDIVEGKGPVA--QKGSTVQVGLNFKVEFQRYIIIVFT--------FSVVLPRTNVTRHLNCGVETQI 140 (141)
Q Consensus 77 psGL~y~dl~~G~G~~p--~~Gd~V~VhY~G~l~~~~~~G~~Fd--------f~f~~g~G~VIkGwDeGv~gm~ 140 (141)
-.|++..++..|+|+-| ..|.+|.+||.-...++. +++.| ....+|..=-.+=|++-+.+|-
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~--~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~ 80 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEE--RTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMR 80 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEEEEEEecccCcc--cccccchhhcCCCeEEeeccccccHHHHHHHHHHh
Confidence 36999999999999854 689999999999886532 22222 3444444434556888887774
No 19
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=43.60 E-value=10 Score=26.34 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=10.8
Q ss_pred CCCceecChHHHhc
Q 032426 124 PRTNVTRHLNCGVE 137 (141)
Q Consensus 124 g~G~VIkGwDeGv~ 137 (141)
..|++|+|||.=+.
T Consensus 38 ~~GNiikGfd~y~k 51 (80)
T PF09340_consen 38 PYGNIIKGFDGYLK 51 (80)
T ss_pred cCCCCeeChhhhhc
Confidence 46999999986543
No 20
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=43.56 E-value=8.9 Score=18.72 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=9.1
Q ss_pred Ccccccccccc
Q 032426 1 MASIRSFGKWT 11 (141)
Q Consensus 1 ~~~~~~~~~~~ 11 (141)
|.++-|||+|=
T Consensus 1 m~a~~~L~~WW 11 (14)
T PF08255_consen 1 MKATFSLHGWW 11 (14)
T ss_pred CceEEEEeeEE
Confidence 77888999984
No 21
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=41.82 E-value=17 Score=33.84 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=21.4
Q ss_pred eeCCCC--cE-EEEeecCC--CCC--CCCCCEEEEEEEEEE
Q 032426 74 HTTSDG--LK-YYDIVEGK--GPV--AQKGSTVQVGLNFKV 107 (141)
Q Consensus 74 ~t~psG--L~-y~dl~~G~--G~~--p~~Gd~V~VhY~G~l 107 (141)
...|+| .. ......|. |+. ++.||+|.||.+=.+
T Consensus 38 ~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L 78 (596)
T PLN00044 38 SAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNAL 78 (596)
T ss_pred EEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCC
Confidence 346888 33 34555664 664 678999998655444
No 22
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=31.95 E-value=39 Score=25.82 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.6
Q ss_pred eC-CCCcEEEEeecCCCC------CCCCCCEEEEEEE
Q 032426 75 TT-SDGLKYYDIVEGKGP------VAQKGSTVQVGLN 104 (141)
Q Consensus 75 t~-psGL~y~dl~~G~G~------~p~~Gd~V~VhY~ 104 (141)
++ -.|+.+..++.|+|- .+++||+|+++++
T Consensus 40 ~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 40 ELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVE 76 (135)
T ss_pred EEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEE
Confidence 44 579999999999873 2589999999886
No 23
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=31.59 E-value=93 Score=20.85 Aligned_cols=33 Identities=24% Similarity=-0.026 Sum_probs=23.1
Q ss_pred ceeCCCCcEEEEeecCCCCCCCCCCEEEEEEEE
Q 032426 73 YHTTSDGLKYYDIVEGKGPVAQKGSTVQVGLNF 105 (141)
Q Consensus 73 ~~t~psGL~y~dl~~G~G~~p~~Gd~V~VhY~G 105 (141)
..++.+|=-|.--.+=+=+..++|..|.|+|+-
T Consensus 18 titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~ 50 (61)
T PF07076_consen 18 TITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDE 50 (61)
T ss_pred EEEecCCCEEECCCcccccccCCCCEEEEEEEc
Confidence 455677776665444444567899999999974
No 24
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=28.85 E-value=83 Score=21.54 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=24.4
Q ss_pred cCCCCCCceeCCCCcEEEEeecCCCCCCCCCCEEEEEEEE
Q 032426 66 KAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVGLNF 105 (141)
Q Consensus 66 ~~~~~~~~~t~psGL~y~dl~~G~G~~p~~Gd~V~VhY~G 105 (141)
+..........|.|++.. +|..+...+.++|+|..
T Consensus 33 ~tlnLGs~~~DPRG~Y~C-----~~s~~~~~~~LQVyYRM 67 (69)
T cd07691 33 TLLDLGSRINDPRGTYSC-----KESEPNKEKTLQVYYRM 67 (69)
T ss_pred cEEeccCcccCCCcceEe-----cCccCCCcEEEEEEEEe
Confidence 334445555679999988 23337788999999963
No 25
>PHA02122 hypothetical protein
Probab=25.95 E-value=1.2e+02 Score=20.38 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.9
Q ss_pred CCCEEEEEEEEEEeeccccceEE
Q 032426 95 KGSTVQVGLNFKVEFQRYIIIVF 117 (141)
Q Consensus 95 ~Gd~V~VhY~G~l~~~~~~G~~F 117 (141)
.||.|.|||.-... |+.|
T Consensus 40 ~gd~v~vn~e~~~n-----g~l~ 57 (65)
T PHA02122 40 DGDEVIVNFELVVN-----GKLI 57 (65)
T ss_pred CCCEEEEEEEEEEC-----CEEE
Confidence 79999999998876 6654
No 26
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=24.56 E-value=1.9e+02 Score=19.24 Aligned_cols=41 Identities=7% Similarity=-0.036 Sum_probs=24.3
Q ss_pred CCcEEEEeecCCCCCCCCCCEEEEEEEEEEeeccccceEEEEEEecCCCceec
Q 032426 78 DGLKYYDIVEGKGPVAQKGSTVQVGLNFKVEFQRYIIIVFTFSVVLPRTNVTR 130 (141)
Q Consensus 78 sGL~y~dl~~G~G~~p~~Gd~V~VhY~G~l~~~~~~G~~Fdf~f~~g~G~VIk 130 (141)
.|.++.+++..++.. |+-+..+. +|+.+++.+....|+|++
T Consensus 41 ~G~~v~~ve~~~~g~----------yev~~~~~--dG~~~ev~vD~~tG~V~~ 81 (83)
T PF13670_consen 41 QGYQVREVEFDDDGC----------YEVEARDK--DGKKVEVYVDPATGEVVK 81 (83)
T ss_pred cCCceEEEEEcCCCE----------EEEEEEEC--CCCEEEEEEcCCCCeEee
Confidence 455777777643221 44443221 388888777767788875
No 27
>PF14444 S1-like: S1-like
Probab=24.39 E-value=1e+02 Score=20.51 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=15.5
Q ss_pred EEEeecCCCCCCCCCCEEEEE
Q 032426 82 YYDIVEGKGPVAQKGSTVQVG 102 (141)
Q Consensus 82 y~dl~~G~G~~p~~Gd~V~Vh 102 (141)
|.....=+|..|+.||+|.|.
T Consensus 23 FF~~~vv~G~~P~vGdrV~v~ 43 (58)
T PF14444_consen 23 FFQTDVVKGNVPKVGDRVLVE 43 (58)
T ss_pred EEEcccEecCCCccCCEEEEE
Confidence 444444568899999999875
Done!