BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032430
         (141 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip
           Revealed By Cryo-electron Microscopy
 pdb|3J1Z|Q Chain Q, Inward-facing Conformation Of The Zinc Transporter Yiip
           Revealed By Cryo-electron Microscopy
          Length = 306

 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66
           G H LR R+AG ++++  H+ +D   S++ AH + +    ++ K+  E +EV IH DP  
Sbjct: 232 GLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRV-KAAFEDAEVIIHQDPV- 289

Query: 67  FQFSPST 73
            Q  P+T
Sbjct: 290 -QVEPTT 295


>pdb|2ZZT|A Chain A, Crystal Structure Of The Cytosolic Domain Of The Cation
          Diffusion Facilitator Family Protein
          Length = 107

 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 9  HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
          HR+R RR G+  +++  I VD   SV  AH +   +R +  K   ++ +V IH++P
Sbjct: 29 HRVRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVKIRKEXLKRRDDIEDVTIHVEP 84


>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
 pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
          Length = 300

 Score = 36.2 bits (82), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           G H LR R++G + ++ +H+ ++    +  AH V + V   I +  P  S+V IH DP
Sbjct: 230 GAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDP 286


>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
          Length = 283

 Score = 36.2 bits (82), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           G H LR R++G + ++ +H+ ++    +  AH V + V   I +  P  S+V IH DP
Sbjct: 223 GAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDP 279


>pdb|3BYP|A Chain A, Mode Of Action Of A Putative Zinc Transporter Czrb
 pdb|3BYP|B Chain B, Mode Of Action Of A Putative Zinc Transporter Czrb
 pdb|3BYR|A Chain A, Mode Of Action Of A Putative Zinc Transporter Czrb (Zn
          Form)
          Length = 94

 Score = 32.7 bits (73), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 9  HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
          H L+ RRAG   +L+ H+VV   + V  AH + + +   + ++ P + +  IH++P
Sbjct: 31 HDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEP 85


>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
           Synthase (Thns) From Streptomyces Coelicolor A3(2): A
           Bacterial Type Iii Polyketide Synthase (Pks) Provides
           Insights Into Enzymatic Control Of Reactive Polyketide
           Intermediates
 pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
           Synthase (Thns) From Streptomyces Coelicolor A3(2): A
           Bacterial Type Iii Polyketide Synthase (Pks) Provides
           Insights Into Enzymatic Control Of Reactive Polyketide
           Intermediates
          Length = 382

 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 19/80 (23%)

Query: 48  IHKSHPEVSE---VFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTL 104
           +H   P + +    F+ +DP  F+FS +T+ + G         NI        AVV + L
Sbjct: 277 VHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYG---------NIA------SAVVLDAL 321

Query: 105 STKFPEKMGVERITHHLLHG 124
              F E  GVE     LL G
Sbjct: 322 RRLFDEG-GVEEGARGLLAG 340


>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
           Maritima Msb8
          Length = 367

 Score = 28.1 bits (61), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 74  MDQLGLEGCKAHSSNICVDDLDIDAVVYNTLST-KFPEKMGVERITHHLLHGKI 126
           M Q GLEG K   S+IC  D     + Y  +   +  EK   E   + L +GK+
Sbjct: 1   MIQKGLEGVKICESSICYLDGINGRLYYRGIPVEELAEKSTFEETAYFLWYGKL 54


>pdb|2QNW|A Chain A, Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein
          Length = 82

 Score = 27.3 bits (59), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 75  DQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGV 114
           DQLG++  + +  +  + DLD D++    L   F EK GV
Sbjct: 18  DQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGV 57


>pdb|2IV2|X Chain X, Reinterpretation Of Reduced Form Of Formate Dehydrogenase
           H From E. Coli
 pdb|1AA6|A Chain A, Reduced Form Of Formate Dehydrogenase H From E. Coli
 pdb|1FDI|A Chain A, Oxidized Form Of Formate Dehydrogenase H From E. Coli
           Complexed With The Inhibitor Nitrite
 pdb|1FDO|A Chain A, Oxidized Form Of Formate Dehydrogenase H From E. Coli
          Length = 715

 Score = 26.6 bits (57), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 72  STMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVER---ITHHLLHGKILL 128
           ST+ ++G   C++ + N        D   Y  ++T+  +++G+E    +  H   GKI+ 
Sbjct: 578 STVREVGHYSCRSMTGNCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIIT 637

Query: 129 EVEVSMSPD 137
             +VS  P+
Sbjct: 638 RAQVSDRPN 646


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,141,547
Number of Sequences: 62578
Number of extensions: 152325
Number of successful extensions: 375
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 10
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)