Query 032430
Match_columns 141
No_of_seqs 177 out of 1086
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 23:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zzt_A Putative uncharacterize 99.7 1.1E-16 3.8E-21 110.9 10.1 66 2-67 22-87 (107)
2 3byp_A CZRB protein; membrane 99.7 3.3E-16 1.1E-20 105.4 10.7 64 3-67 25-88 (94)
3 3j1z_P YIIP, cation efflux fam 99.5 1E-14 3.5E-19 117.3 7.0 67 2-69 227-293 (306)
4 3h90_A Ferrous-iron efflux pum 99.5 8.4E-14 2.9E-18 110.4 10.5 65 2-67 218-282 (283)
5 3byp_A CZRB protein; membrane 96.2 0.0086 2.9E-07 39.0 5.2 45 95-140 10-56 (94)
6 2zzt_A Putative uncharacterize 95.9 0.011 3.7E-07 39.9 4.7 44 96-140 11-54 (107)
7 3h90_A Ferrous-iron efflux pum 93.1 0.17 5.9E-06 39.2 5.9 45 95-140 206-250 (283)
8 3j1z_P YIIP, cation efflux fam 93.1 0.061 2.1E-06 42.5 3.3 45 95-140 215-259 (306)
9 3jtz_A Integrase; four strande 61.6 22 0.00075 22.7 5.5 29 22-50 49-77 (88)
10 2ns6_A Mobilization protein A; 59.1 27 0.00091 25.5 6.2 47 17-63 67-113 (185)
11 1ghh_A DINI, DNA-damage-induci 58.5 22 0.00076 22.7 5.0 70 22-106 3-73 (81)
12 3ju0_A Phage integrase; four s 53.0 33 0.0011 22.8 5.4 29 22-50 49-77 (108)
13 3lno_A Putative uncharacterize 50.2 20 0.00067 23.6 3.9 44 18-64 44-87 (108)
14 1mli_A Muconolactone isomerase 44.2 48 0.0017 21.8 5.0 50 19-70 2-51 (96)
15 2x4k_A 4-oxalocrotonate tautom 39.7 47 0.0016 18.4 4.1 42 25-67 7-50 (63)
16 1z9w_A DHNA, dihydroneopterin 37.6 74 0.0025 21.6 5.4 49 14-63 23-98 (133)
17 3cq1_A Putative uncharacterize 34.7 68 0.0023 20.5 4.6 50 8-63 33-82 (103)
18 1j27_A Hypothetical protein TT 29.8 1.2E+02 0.004 19.9 5.2 32 21-53 7-38 (102)
19 1otf_A 4-oxalocrotonate tautom 29.7 76 0.0026 17.6 4.1 41 25-66 4-46 (62)
20 1ib8_A Conserved protein SP14. 29.6 1.3E+02 0.0044 21.2 5.7 43 7-49 27-69 (164)
21 1uwd_A Hypothetical protein TM 28.0 77 0.0026 20.2 4.0 42 18-63 42-83 (103)
22 3m21_A Probable tautomerase HP 27.8 92 0.0032 17.9 4.9 44 24-67 3-50 (67)
23 2cjs_A UNC-13 homolog A, MUNC1 27.3 1.3E+02 0.0043 21.0 5.4 31 16-46 129-159 (167)
24 1xg8_A Hypothetical protein SA 26.5 64 0.0022 21.8 3.3 33 86-122 21-53 (111)
25 3abf_A 4-oxalocrotonate tautom 25.8 94 0.0032 17.4 4.7 43 25-67 5-48 (64)
26 3i38_A Putative chaperone DNAJ 24.4 98 0.0033 20.2 4.0 27 18-44 68-94 (109)
27 1th5_A NIFU1; iron-sulfur clus 23.3 66 0.0023 19.9 2.8 21 39-59 51-71 (74)
28 1dhn_A DHNA, 7,8-dihydroneopte 23.1 1.3E+02 0.0043 19.9 4.4 59 5-63 4-99 (121)
29 3e6q_A Putative 5-carboxymethy 22.4 2E+02 0.0068 19.9 7.4 46 19-64 80-129 (146)
30 3ry0_A Putative tautomerase; o 22.4 1.2E+02 0.004 17.3 3.8 43 25-67 4-47 (65)
31 3ej9_A Alpha-subunit of trans- 22.0 98 0.0033 18.6 3.4 43 24-66 4-47 (76)
32 3mb2_A 4-oxalocrotonate tautom 21.6 1.3E+02 0.0045 17.5 4.7 41 25-66 5-47 (72)
33 2cg8_A Dihydroneopterin aldola 20.2 81 0.0028 24.2 3.3 48 16-63 24-98 (270)
34 2r4f_A 3-hydroxy-3-methylgluta 20.1 3.7E+02 0.013 22.3 7.5 49 7-55 196-244 (441)
35 1xhj_A Nitrogen fixation prote 20.0 1.7E+02 0.0057 18.7 4.3 28 34-61 52-79 (88)
No 1
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.70 E-value=1.1e-16 Score=110.93 Aligned_cols=66 Identities=29% Similarity=0.477 Sum_probs=62.6
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 032430 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (141)
Q Consensus 2 ~~gV~~vh~lr~R~~G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~VhidP~~~ 67 (141)
+|||.+||+||+|++|+.+++++||.|++++|+.++|+|+++|+++|+++||.+.+++||+||...
T Consensus 22 ~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvEp~~~ 87 (107)
T 2zzt_A 22 FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPLGN 87 (107)
T ss_dssp CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTC
T ss_pred CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEecCCC
Confidence 699999999999999999999999999999999999999999999999999988999999999765
No 2
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.68 E-value=3.3e-16 Score=105.40 Aligned_cols=64 Identities=27% Similarity=0.458 Sum_probs=60.5
Q ss_pred CCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 032430 3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (141)
Q Consensus 3 ~gV~~vh~lr~R~~G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~VhidP~~~ 67 (141)
|||.+||+||+|++|+.+++++||.|++++|+.++|+|++++++.|+++||.+ +++||+||...
T Consensus 25 ~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~-~vtIh~ep~~~ 88 (94)
T 3byp_A 25 GRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPEGE 88 (94)
T ss_dssp TTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EEEEEEEECC-
T ss_pred CCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-EEEEEeCCCCc
Confidence 89999999999999999999999999999999999999999999999999975 99999999543
No 3
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=99.53 E-value=1e-14 Score=117.26 Aligned_cols=67 Identities=27% Similarity=0.501 Sum_probs=63.5
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCC
Q 032430 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF 69 (141)
Q Consensus 2 ~~gV~~vh~lr~R~~G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~VhidP~~~~~ 69 (141)
.|||.++|++|+|++|+++++|+||.||+++|++|+|+|++++|++|+++||. .+++||+||+..+.
T Consensus 227 ~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~-~~v~IhveP~~~eP 293 (306)
T 3j1z_P 227 DPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED-AEVIIHQDPVQVEP 293 (306)
T ss_dssp STTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTT-CEEEECCEETTSCC
T ss_pred CCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-CeEEEEeCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999985 89999999987653
No 4
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=99.51 E-value=8.4e-14 Score=110.40 Aligned_cols=65 Identities=29% Similarity=0.544 Sum_probs=62.5
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 032430 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (141)
Q Consensus 2 ~~gV~~vh~lr~R~~G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~VhidP~~~ 67 (141)
.|||.++|++|+|++|+.+++++|+.+++++|++|+|+|+++++++|+++||. .+++||+||+++
T Consensus 218 ~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~~ 282 (283)
T 3h90_A 218 WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCSV 282 (283)
T ss_dssp SSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSCC
T ss_pred CCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCCC
Confidence 58999999999999999999999999999999999999999999999999997 899999999865
No 5
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=96.20 E-value=0.0086 Score=39.04 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=37.2
Q ss_pred hHHHHHHHHhcccC--CCCcccccEEEEEeCCeEEEEEEEEcCCCCcC
Q 032430 95 DIDAVVYNTLSTKF--PEKMGVERITHHLLHGKILLEVEVSMSPDTSI 140 (141)
Q Consensus 95 ~i~~~l~~~~~~~~--~~~~~v~~v~lhy~~~~~~v~v~~~~~~~~~i 140 (141)
+..+.++..+.+ + |...++|++.+.+.++...+++++.++++|++
T Consensus 10 ~~~~~I~~~l~~-~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~ 56 (94)
T 3byp_A 10 EEVERIRAFLQE-RIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPV 56 (94)
T ss_dssp HHHHHHHHHHHH-HHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBH
T ss_pred HHHHHHHHHHHh-cCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcH
Confidence 344556666655 6 78899999999999999999999999999874
No 6
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=95.93 E-value=0.011 Score=39.93 Aligned_cols=44 Identities=16% Similarity=0.359 Sum_probs=37.4
Q ss_pred HHHHHHHHhcccCCCCcccccEEEEEeCCeEEEEEEEEcCCCCcC
Q 032430 96 IDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSI 140 (141)
Q Consensus 96 i~~~l~~~~~~~~~~~~~v~~v~lhy~~~~~~v~v~~~~~~~~~i 140 (141)
..+.++.++.+ +|....++++.+.+.++.+.+++++.++++||+
T Consensus 11 ~~~~I~~~l~~-~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv 54 (107)
T 2zzt_A 11 MYDDIFAVLER-FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSV 54 (107)
T ss_dssp HHHHHHHHHTT-CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCH
T ss_pred HHHHHHHHHHc-CCCccccEEEEEEEECCcEEEEEEEEECCCCCH
Confidence 55667777766 888899999999999999999999999999875
No 7
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=93.12 E-value=0.17 Score=39.21 Aligned_cols=45 Identities=7% Similarity=0.243 Sum_probs=38.3
Q ss_pred hHHHHHHHHhcccCCCCcccccEEEEEeCCeEEEEEEEEcCCCCcC
Q 032430 95 DIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSI 140 (141)
Q Consensus 95 ~i~~~l~~~~~~~~~~~~~v~~v~lhy~~~~~~v~v~~~~~~~~~i 140 (141)
+..++++..+.+ .|....+|++.+.+.+.+..+++|+.+++++++
T Consensus 206 ~~~~~i~~~i~~-~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~ 250 (283)
T 3h90_A 206 EERQEIIDIVTS-WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPL 250 (283)
T ss_dssp HHHHHHHHHHHH-SSSCSEEEEEEEEEETTEEEEEEEEECCTTCBH
T ss_pred HHHHHHHHHHhc-CCCcccceeeEEEEECCcEEEEEEEEeCCCCCH
Confidence 455566666666 788899999999999999999999999999875
No 8
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=93.11 E-value=0.061 Score=42.52 Aligned_cols=45 Identities=9% Similarity=0.211 Sum_probs=38.5
Q ss_pred hHHHHHHHHhcccCCCCcccccEEEEEeCCeEEEEEEEEcCCCCcC
Q 032430 95 DIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSI 140 (141)
Q Consensus 95 ~i~~~l~~~~~~~~~~~~~v~~v~lhy~~~~~~v~v~~~~~~~~~i 140 (141)
+..+.++..+.+ .|...++|++.+.+.+.++.+++++.+|+++|+
T Consensus 215 ~~~~~I~~~i~~-~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl 259 (306)
T 3j1z_P 215 DTRQRIKLIAKE-DPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSL 259 (306)
T ss_dssp HHHHHHHHHHHH-STTBCCCCCBCCEEETTEEEEEECCEECTTSBH
T ss_pred hHHHHHHHHHhc-CCCcceeeeEEEEEECCcEEEEEEEEECCCCCH
Confidence 345566777666 788899999999999999999999999999985
No 9
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=61.60 E-value=22 Score=22.71 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=25.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 032430 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (141)
Q Consensus 22 vd~hI~V~~~lsv~eah~I~~~ve~~l~~ 50 (141)
-.+.|.--|.+|+++|-+.+++++..|.+
T Consensus 49 ~~~~LG~yp~~sL~~AR~~a~~~r~~l~~ 77 (88)
T 3jtz_A 49 SRIALGAYPAISLSDARQQREGIRKMLAL 77 (88)
T ss_dssp EEEEEEETTTSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEeECCCCCCHHHHHHHHHHHHHHHHc
Confidence 35678888999999999999999998864
No 10
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=59.11 E-value=27 Score=25.51 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=41.8
Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 032430 17 GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (141)
Q Consensus 17 G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~Vhid 63 (141)
.+.+.=++.|.+|..+|.++-.+++...-+......+-+.|+.||-+
T Consensus 67 na~lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~ 113 (185)
T 2ns6_A 67 NGRLFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAG 113 (185)
T ss_dssp TSCCEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEE
T ss_pred CCeEEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcC
Confidence 56778899999999999999999999999988877777799999974
No 11
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=58.47 E-value=22 Score=22.72 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=43.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe-eEEEEEEeeCCCCCCCCcccccccccccCCCCCCCCchhhHHHHH
Q 032430 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV-SEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVV 100 (141)
Q Consensus 22 vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v-~dv~VhidP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~l 100 (141)
|++.+.=...++-.....|..++.++|...||+. ..|.|..-. ...- +..|.. --.++.|.+.|
T Consensus 3 VEi~~dK~~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~s--~n~l-------sV~g~~------k~dKe~i~eiL 67 (81)
T 1ghh_A 3 IEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAA--ANNL-------SVIGAT------KEDKQRISEIL 67 (81)
T ss_dssp EEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEES--SCEE-------EEESCC------HHHHHHHHHHH
T ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCceEEEeecC--CCce-------eecCCC------hhHHHHHHHHH
Confidence 4444433446777888899999999999999983 256654433 2111 111110 01377888888
Q ss_pred HHHhcc
Q 032430 101 YNTLST 106 (141)
Q Consensus 101 ~~~~~~ 106 (141)
...|..
T Consensus 68 qE~we~ 73 (81)
T 1ghh_A 68 QETWES 73 (81)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 888865
No 12
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=53.01 E-value=33 Score=22.78 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=24.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 032430 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (141)
Q Consensus 22 vd~hI~V~~~lsv~eah~I~~~ve~~l~~ 50 (141)
-.+.|.--|.+|+++|-+.+.+++..|.+
T Consensus 49 ~~~~LG~yp~~SLa~AR~~a~~~r~~l~~ 77 (108)
T 3ju0_A 49 RLLALGVYPAVSLADARQRRDEAKKLLAA 77 (108)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 35667778999999999999999998864
No 13
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=50.20 E-value=20 Score=23.59 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=31.9
Q ss_pred CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEee
Q 032430 18 SSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64 (141)
Q Consensus 18 ~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~VhidP 64 (141)
+.+.|++.+..+.- + .+..|...++++|+..+|++..|.|.+.-
T Consensus 44 ~~V~V~ltlt~p~c-p--~~~~i~~~i~~al~~~l~Gv~~V~V~l~~ 87 (108)
T 3lno_A 44 NNAVITMTMTSIGC-P--MAGQIVSDVKKVLSTNVPEVNEIEVNVVW 87 (108)
T ss_dssp CCEEEEECCSCTTC-T--THHHHHHHHHHHHHHHCTTCCCEEEEECC
T ss_pred CeEEEEEEECCCCC-c--HHHHHHHHHHHHHHHhCCCCceEEEEEEe
Confidence 56777766665542 3 45689999999995568888888887753
No 14
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=44.19 E-value=48 Score=21.81 Aligned_cols=50 Identities=4% Similarity=0.022 Sum_probs=33.6
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCC
Q 032430 19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFS 70 (141)
Q Consensus 19 ~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~VhidP~~~~~~ 70 (141)
-++|.+++.+|++++..++.++..+=++.-++-.. .-...|+--..+...
T Consensus 2 lFlV~m~V~~P~~~~~~~~~~~~a~Eka~a~eLq~--~G~~~~lWRv~G~y~ 51 (96)
T 1mli_A 2 LFHVKMTVKLPVDMDPAKATQLKADEKELAQRLQR--EGTWRHLWRIAGHYA 51 (96)
T ss_pred eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHh--CCeeEEEEEecCCcc
Confidence 36899999999999999999987665554433221 235566665544433
No 15
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=39.68 E-value=47 Score=18.42 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=30.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhhC--CCeeEEEEEEeeCCC
Q 032430 25 HIVVDPFSSVSAAHGVGENVRHQIHKSH--PEVSEVFIHIDPAYF 67 (141)
Q Consensus 25 hI~V~~~lsv~eah~I~~~ve~~l~~~~--p~v~dv~VhidP~~~ 67 (141)
+|.+.+..|-++-.++++.+.+.+.+.+ |. .+++|.+.....
T Consensus 7 ~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~-~~v~v~i~e~~~ 50 (63)
T 2x4k_A 7 NVKLLEGRSDEQLKNLVSEVTDAVEKTTGANR-QAIHVVIEEMKP 50 (63)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHCCCG-GGCEEEEEEECG
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCc-ccEEEEEEEcCH
Confidence 4455566799999999999999998753 43 578887776543
No 16
>1z9w_A DHNA, dihydroneopterin aldolase; FOLB, structural genomics, TB ST genomics; 2.50A {Mycobacterium tuberculosis H37RV} SCOP: d.96.1.3
Probab=37.60 E-value=74 Score=21.62 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=34.3
Q ss_pred EeeCCEEEEEEEEEECCCC-----------CHHHH----------------HHHHHHHHHHHHhhCCCeeEEEEEEe
Q 032430 14 RRAGSSLYLDVHIVVDPFS-----------SVSAA----------------HGVGENVRHQIHKSHPEVSEVFIHID 63 (141)
Q Consensus 14 R~~G~~~~vd~hI~V~~~l-----------sv~ea----------------h~I~~~ve~~l~~~~p~v~dv~Vhid 63 (141)
|..|..+.+|+.+.++..- +-.+. ..++++|.+.+.+ ||.+..|+|.+.
T Consensus 23 r~~~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~i~~~v~~~~~~LiE~lA~~Ia~~il~-~~~v~~v~V~v~ 98 (133)
T 1z9w_A 23 RVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRAAEIVAGPPRKLIETVGAEIADHVMD-DQRVHAVEVAVH 98 (133)
T ss_dssp ---CCEEEEEEEEEECCCCGGGCSSHHHHSCHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHH-STTEEEEEEEEE
T ss_pred HccCCEEEEEEEEEEcchhcccccCchhccCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhc-CCCccEEEEEEE
Confidence 4678999999999998542 21111 2456777788888 999988999887
No 17
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=34.70 E-value=68 Score=20.53 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=32.1
Q ss_pred eeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 032430 8 CHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (141)
Q Consensus 8 vh~lr~R~~G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~Vhid 63 (141)
|.++.+ .|+.+.|++.+..+.- + ....|.+.++++|+ ++|++..|.|.+.
T Consensus 33 V~~v~v--~~~~V~v~l~lt~~~c-p--~~~~l~~~i~~al~-~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 33 IYDLVV--EPPRAYVRMTLTTPGC-P--LHDSLGEAVRQALS-RLPGVEEVEVEVT 82 (103)
T ss_dssp EEEEEE--ETTEEEEEECCSSSSC-C--SSCHHHHHHHHHHH-TSTTCCEEEEEEC
T ss_pred eEEEEE--ECCEEEEEEEECCCCC-c--HHHHHHHHHHHHHH-hCCCceeEEEEEe
Confidence 344444 3556555555543322 2 36679999999996 5788888887764
No 18
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=29.78 E-value=1.2e+02 Score=19.93 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=28.7
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCC
Q 032430 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHP 53 (141)
Q Consensus 21 ~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p 53 (141)
.+.+++.++ --|++|=..+...+.++++++|+
T Consensus 7 ~l~~~l~l~-~~SLKeKR~vvksl~~rlr~rFn 38 (102)
T 1j27_A 7 LYTARLETP-ARSLKEKRALIKPALERLKARFP 38 (102)
T ss_dssp EEEEEEECC-CSSHHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEEEEEe-CCChHHhHHHHHHHHHHHhhcCC
Confidence 456777888 89999999999999999999997
No 19
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=29.74 E-value=76 Score=17.61 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=30.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhhC--CCeeEEEEEEeeCC
Q 032430 25 HIVVDPFSSVSAAHGVGENVRHQIHKSH--PEVSEVFIHIDPAY 66 (141)
Q Consensus 25 hI~V~~~lsv~eah~I~~~ve~~l~~~~--p~v~dv~VhidP~~ 66 (141)
+|.+.+..|.++-.++++.+.+.+.+.+ |. .++.|.+...+
T Consensus 4 ~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~-~~v~v~i~e~~ 46 (62)
T 1otf_A 4 QLYIIEGRTDEQKETLIRQVSEAMANSLDAPL-ERVRVLITEMP 46 (62)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHTCCG-GGCEEEEEEEC
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCc-ccEEEEEEEeC
Confidence 4555566799999999999999998764 32 57777776543
No 20
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=29.58 E-value=1.3e+02 Score=21.25 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=37.0
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q 032430 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIH 49 (141)
Q Consensus 7 ~vh~lr~R~~G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~ 49 (141)
.+-++...+.|+..++.+.|.=+..+|+.+...++..+...|-
T Consensus 27 eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD 69 (164)
T 1ib8_A 27 ELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLD 69 (164)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTT
T ss_pred EEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 4567788888999988888888889999999999999988876
No 21
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=28.03 E-value=77 Score=20.24 Aligned_cols=42 Identities=10% Similarity=0.081 Sum_probs=29.5
Q ss_pred CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 032430 18 SSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (141)
Q Consensus 18 ~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~Vhid 63 (141)
+.+.|++.+..+.- + ....|.+.++++|+ .+|++.+|.|.+.
T Consensus 42 ~~V~v~l~lt~~~c-p--~~~~l~~~i~~al~-~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 42 NNVKVLMTMTTPMC-P--LAGMILSDAEEAIK-KIEGVNNVEVELT 83 (103)
T ss_dssp CEEEEEECCSSSCC-S--SHHHHHHHHHHHHH-TSSSCCEEEEEEC
T ss_pred CEEEEEEEECCCCC-c--HHHHHHHHHHHHHH-hCCCcceEEEEEe
Confidence 56666666544332 2 47789999999996 5788888887764
No 22
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=27.76 E-value=92 Score=17.95 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=32.9
Q ss_pred EEEEECC---CCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEeeCCC
Q 032430 24 VHIVVDP---FSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAYF 67 (141)
Q Consensus 24 ~hI~V~~---~lsv~eah~I~~~ve~~l~~~~p~-v~dv~VhidP~~~ 67 (141)
++|.+.+ ..|.++-.++.+.+.+.+.+.++- -.++.|.+.....
T Consensus 3 i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~ 50 (67)
T 3m21_A 3 INIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDS 50 (67)
T ss_dssp EEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCT
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCH
Confidence 4566776 799999999999999999876531 1577777776544
No 23
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=27.34 E-value=1.3e+02 Score=20.95 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=26.9
Q ss_pred eCCEEEEEEEEEECCCCCHHHHHHHHHHHHH
Q 032430 16 AGSSLYLDVHIVVDPFSSVSAAHGVGENVRH 46 (141)
Q Consensus 16 ~G~~~~vd~hI~V~~~lsv~eah~I~~~ve~ 46 (141)
.++.+++++.++.+.....+||+.+.+.+++
T Consensus 129 ~~~~lll~~~~e~~~~~~~eea~~~~~~~~~ 159 (167)
T 2cjs_A 129 TFHRILLDAHFELPLDIPEEEARYWAKKLEQ 159 (167)
T ss_dssp EEEEEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred ccceEEEEEEeecCCCCchHHHHHHHHHHHH
Confidence 3456899999999999999999999888764
No 24
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=26.51 E-value=64 Score=21.78 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.1
Q ss_pred CCCCCCchhhHHHHHHHHhcccCCCCcccccEEEEEe
Q 032430 86 SSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLL 122 (141)
Q Consensus 86 ~~~~~p~~~~i~~~l~~~~~~~~~~~~~v~~v~lhy~ 122 (141)
.|..+|+-.+..+.|..++..++|+ +.+.+.|.
T Consensus 21 SCVnaPSSkeTyEWLqAal~RKyp~----~~f~~~YI 53 (111)
T 1xg8_A 21 SCVNAPTSKDIYDWLQPLLKRKYPN----ISFKYTYI 53 (111)
T ss_dssp GGSSSCCHHHHHHHHHHHHHHHCTT----SCEEEEEE
T ss_pred hccCCCCchhHHHHHHHHHhCcCCC----CceEEEEE
Confidence 5778999999999999999988865 46777774
No 25
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=25.80 E-value=94 Score=17.37 Aligned_cols=43 Identities=7% Similarity=-0.062 Sum_probs=30.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEeeCCC
Q 032430 25 HIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAYF 67 (141)
Q Consensus 25 hI~V~~~lsv~eah~I~~~ve~~l~~~~p~-v~dv~VhidP~~~ 67 (141)
+|.+.+..|.++-.+++..+.+.+.+.++- -.++.|.+.....
T Consensus 5 ~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~ 48 (64)
T 3abf_A 5 KVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRR 48 (64)
T ss_dssp EEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECG
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCH
Confidence 444545679998999999999999875431 1578888876543
No 26
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=24.37 E-value=98 Score=20.21 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=20.8
Q ss_pred CEEEEEEEEEECCCCCHHHHHHHHHHH
Q 032430 18 SSLYLDVHIVVDPFSSVSAAHGVGENV 44 (141)
Q Consensus 18 ~~~~vd~hI~V~~~lsv~eah~I~~~v 44 (141)
+.++|.+.|.+|..+|-++-..+.+-.
T Consensus 68 GDL~v~~~V~~P~~Ls~~q~~~l~~l~ 94 (109)
T 3i38_A 68 GDLFAVIKIVMPTKPDEKARELWQQLA 94 (109)
T ss_dssp CCEEEEEEECCCSSCCHHHHHHHHHHH
T ss_pred cCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999977755554433
No 27
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=23.27 E-value=66 Score=19.93 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhCCCeeEEE
Q 032430 39 GVGENVRHQIHKSHPEVSEVF 59 (141)
Q Consensus 39 ~I~~~ve~~l~~~~p~v~dv~ 59 (141)
-+...|+++|++.+|++..|.
T Consensus 51 Tlk~gIe~~L~~~vpei~~V~ 71 (74)
T 1th5_A 51 TVRIAVSKKLREKIPSIQIVQ 71 (74)
T ss_dssp SHHHHHHHHHHHHCTTCSEEE
T ss_pred HHHHHHHHHHHHHCCCCcEEE
Confidence 456789999999999987764
No 28
>1dhn_A DHNA, 7,8-dihydroneopterin aldolase; pterin binding, folate biosynthesis, antibiotic target, beta; 1.65A {Staphylococcus aureus} SCOP: d.96.1.3 PDB: 1rri_A* 1rrw_A* 1rry_A* 1rs2_A* 1rs4_A* 1rsd_A* 1rsi_A* 1u68_A* 2dhn_A* 2nm2_A* 2nm3_A*
Probab=23.07 E-value=1.3e+02 Score=19.92 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=41.4
Q ss_pred ceeeeeEEEE----------eeCCEEEEEEEEEECCC-----------CCHHHH----------------HHHHHHHHHH
Q 032430 5 LQGCHRLRGR----------RAGSSLYLDVHIVVDPF-----------SSVSAA----------------HGVGENVRHQ 47 (141)
Q Consensus 5 V~~vh~lr~R----------~~G~~~~vd~hI~V~~~-----------lsv~ea----------------h~I~~~ve~~ 47 (141)
.+.+.+|+.. ..|..+.+|+.+.++.. ++-.+. ..+++++.+.
T Consensus 4 ~I~i~~l~~~~~iGv~~~Er~~~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~i~~~v~~~~~~LiE~lA~~Ia~~ 83 (121)
T 1dhn_A 4 TIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANR 83 (121)
T ss_dssp EEEEEEEEEEECCSSSHHHHHHCEEEEEEEEEEECCHHHHHHCCGGGSCCHHHHHHHHHHHHTSSCCSCHHHHHHHHHHH
T ss_pred EEEECCeEEEEEECCCHHHHccCCEEEEEEEEEEcchhccccCCccceeCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3455666665 45789999999998842 232222 2456777788
Q ss_pred HHhhCCCeeEEEEEEe
Q 032430 48 IHKSHPEVSEVFIHID 63 (141)
Q Consensus 48 l~~~~p~v~dv~Vhid 63 (141)
+.+.||.+..|.|.+.
T Consensus 84 ~l~~~~~v~~v~V~v~ 99 (121)
T 1dhn_A 84 INSQYNRVMETKVRIT 99 (121)
T ss_dssp HHHHCTTEEEEEEEEE
T ss_pred HHHHCCCceEEEEEEE
Confidence 8889998888988887
No 29
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=22.41 E-value=2e+02 Score=19.91 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=36.4
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe----eEEEEEEee
Q 032430 19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV----SEVFIHIDP 64 (141)
Q Consensus 19 ~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v----~dv~VhidP 64 (141)
.-||-+.|.+-+.-|.++=.++++.|-+.|.+.++.. ..++|.+.-
T Consensus 80 ~~FVhV~i~ll~GRt~EqK~~L~e~v~~al~~~l~~~~~~~~~lsVeI~E 129 (146)
T 3e6q_A 80 RAYLHACLSILDGRDAATRQALGESLCEVLAGAVAGGGEEGVQVSVEVRE 129 (146)
T ss_dssp CCEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHEEECSSSCEEEEEEEEE
T ss_pred ccEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCccCCceEEEEEEEE
Confidence 3588888888889999999999999999999887642 246665553
No 30
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=22.38 E-value=1.2e+02 Score=17.29 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=30.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEeeCCC
Q 032430 25 HIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAYF 67 (141)
Q Consensus 25 hI~V~~~lsv~eah~I~~~ve~~l~~~~p~-v~dv~VhidP~~~ 67 (141)
+|.+.+..|.++-.++++.+.+.+.+.++- -.++.|-+...+.
T Consensus 4 ~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~ 47 (65)
T 3ry0_A 4 RVTLLEGRSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETPP 47 (65)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECG
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCH
Confidence 444556789999999999999999886531 1467776665443
No 31
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=21.99 E-value=98 Score=18.58 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=30.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEeeCC
Q 032430 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAY 66 (141)
Q Consensus 24 ~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~-v~dv~VhidP~~ 66 (141)
++|.+.+..|.++-.++++.+.+.+.+.++- -.+++|-+...+
T Consensus 4 I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~E~~ 47 (76)
T 3ej9_A 4 ISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIREGS 47 (76)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEEC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeC
Confidence 3455556789999999999999999876531 246777666443
No 32
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=21.57 E-value=1.3e+02 Score=17.55 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=30.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhhC--CCeeEEEEEEeeCC
Q 032430 25 HIVVDPFSSVSAAHGVGENVRHQIHKSH--PEVSEVFIHIDPAY 66 (141)
Q Consensus 25 hI~V~~~lsv~eah~I~~~ve~~l~~~~--p~v~dv~VhidP~~ 66 (141)
+|.+.+..|.++-.++.+.+.+.+.+.+ |. .+++|.++..+
T Consensus 5 ~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~-~~v~V~i~e~~ 47 (72)
T 3mb2_A 5 RITMLEGRSTEQKAELARALSAAAAAAFDVPL-AEVRLIIQEVP 47 (72)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHTCCG-GGEEEEEEEEC
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCc-ccEEEEEEEcC
Confidence 3444467899999999999999998754 32 57888877654
No 33
>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae}
Probab=20.25 E-value=81 Score=24.23 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=34.1
Q ss_pred eCCEEEEEEEEEECCC-----------CCHHHH----------------HHHHHHHHHHHHhhCCCeeEEEEEEe
Q 032430 16 AGSSLYLDVHIVVDPF-----------SSVSAA----------------HGVGENVRHQIHKSHPEVSEVFIHID 63 (141)
Q Consensus 16 ~G~~~~vd~hI~V~~~-----------lsv~ea----------------h~I~~~ve~~l~~~~p~v~dv~Vhid 63 (141)
.|..+.+|+.+.++.. ++-.+. ..+++++.+.+.+.||.+..|.|.+.
T Consensus 24 ~~Q~~~vdv~l~~d~~~a~~sDdl~~tvdY~~v~~~I~~~~~~~~f~LiE~lA~~Ia~~ll~~~~~v~~V~V~v~ 98 (270)
T 2cg8_A 24 LGQKFIVSAILSYDMTKAATDLDLTASVHYGELCQQWTTWFQETSEDLIETVAYKLVERTFESYPLVQEMKLELK 98 (270)
T ss_dssp HCEEEEEEEEEEECCHHHHC-------CCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred cCcEEEEEEEEEEchhhccccCCccccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHhcCCceEEEEEEe
Confidence 4778999999988732 222222 23556677777888998999999887
No 34
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...
Probab=20.12 E-value=3.7e+02 Score=22.27 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=43.8
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe
Q 032430 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV 55 (141)
Q Consensus 7 ~vh~lr~R~~G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v 55 (141)
++.++..+-.|..+++.+.+..-.-|=.--.....+.+...|.+.||..
T Consensus 196 ~l~~i~~~~~g~~l~lrf~~~TgDAMG~NMvn~~~E~v~~~l~~~~~~~ 244 (441)
T 2r4f_A 196 RLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEM 244 (441)
T ss_dssp EECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccceEEEEeeCCEEEEEEEEecchhhcchhHHHHHHHHHHHHHhhCCCC
Confidence 5667888889999999999999999999999999999999999889873
No 35
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=20.04 E-value=1.7e+02 Score=18.65 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEEEEE
Q 032430 34 VSAAHGVGENVRHQIHKSHPEVSEVFIH 61 (141)
Q Consensus 34 v~eah~I~~~ve~~l~~~~p~v~dv~Vh 61 (141)
-+..--+...|++.|++.+|++..|..-
T Consensus 52 pss~~TLk~gIE~~L~~~vPev~~V~~v 79 (88)
T 1xhj_A 52 PSSTITLKAGIERALHEEVPGVIEVEQV 79 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred cchHHHHHHHHHHHHHHhCCCceEEEec
Confidence 3445567889999999999998877543
Done!