Query 032430
Match_columns 141
No_of_seqs 177 out of 1086
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 23:01:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032430.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032430hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bypa1 d.52.9.1 (A:6-87) Puta 99.8 1.2E-19 8.5E-24 119.2 10.6 61 4-65 21-81 (82)
2 d2qfia1 d.52.9.1 (A:209-290) F 99.7 1.4E-20 1.1E-24 123.4 -5.5 64 2-66 17-80 (82)
3 d3bypa1 d.52.9.1 (A:6-87) Puta 97.3 0.00015 1.1E-08 45.7 4.5 44 96-140 6-51 (82)
4 d2qfia1 d.52.9.1 (A:209-290) F 97.0 2.4E-05 1.8E-09 49.4 -1.6 46 95-141 5-50 (82)
5 d1ghha_ d.57.1.1 (A:) DNA dama 57.3 10 0.00073 22.8 4.7 71 22-106 3-73 (81)
6 d1iwga3 d.58.44.1 (A:567-673) 55.6 18 0.0013 21.8 6.1 41 22-62 6-47 (107)
7 d1mlia_ d.58.4.1 (A:) Muconala 53.2 8.5 0.00062 23.9 4.0 24 20-43 3-26 (96)
8 d2cu6a1 d.52.8.2 (A:6-96) Hypo 41.8 16 0.0011 21.9 3.9 44 16-63 34-77 (91)
9 d2i52a1 d.316.1.1 (A:1-120) Hy 41.6 13 0.00093 24.0 3.5 34 33-67 38-71 (120)
10 d1ofua2 d.79.2.1 (A:209-317) C 36.8 19 0.0014 22.3 3.8 35 24-62 55-89 (109)
11 d1w5fa2 d.79.2.1 (A:216-336) C 36.6 17 0.0013 23.0 3.6 36 23-62 58-93 (121)
12 d2vapa2 d.79.2.1 (A:232-354) C 36.0 19 0.0014 22.8 3.8 36 24-63 56-91 (123)
13 d2f5ga1 d.58.57.1 (A:2-131) Pu 33.0 37 0.0027 21.4 4.9 35 21-55 59-94 (130)
14 d1th5a1 d.52.8.1 (A:154-226) N 29.3 23 0.0017 20.5 3.0 38 17-60 34-71 (73)
15 d2aala1 d.80.1.6 (A:1-129) Mal 28.0 45 0.0032 20.9 4.6 29 24-52 3-31 (129)
16 d1rq2a2 d.79.2.1 (A:206-312) C 26.3 36 0.0026 20.9 3.8 36 23-62 53-88 (107)
17 d2fyxa1 d.58.57.1 (A:1-130) Pu 24.3 77 0.0056 19.7 5.3 36 20-55 57-93 (130)
18 d2ieca1 d.316.1.1 (A:11-123) H 23.4 34 0.0025 21.6 3.1 31 33-64 28-58 (113)
19 d1ib8a2 d.52.4.1 (A:1-90) Hypo 22.8 73 0.0053 18.8 5.7 43 7-49 27-69 (90)
20 d1xg8a_ c.47.1.17 (A:) Hypothe 22.8 39 0.0028 21.2 3.3 33 86-122 21-53 (111)
21 d1dhna_ d.96.1.3 (A:) 7,8-dihy 21.6 66 0.0048 19.5 4.4 26 39-64 75-100 (121)
22 d1bdfa1 d.74.3.1 (A:2-52,A:179 20.7 72 0.0052 19.4 4.4 45 22-70 23-68 (105)
No 1
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}
Probab=99.81 E-value=1.2e-19 Score=119.22 Aligned_cols=61 Identities=28% Similarity=0.526 Sum_probs=58.9
Q ss_pred CceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeC
Q 032430 4 SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65 (141)
Q Consensus 4 gV~~vh~lr~R~~G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~VhidP~ 65 (141)
|+.++|+||+|++|+++|+|+||+|+++||+++||+|+++++++|++.||+ .+++||+||+
T Consensus 21 ~vv~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~i~~~ve~~i~~~~~~-~~v~vHveP~ 81 (82)
T d3bypa1 21 RALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG-LQATIHVEPE 81 (82)
T ss_dssp TCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT-EEEEEEEEEC
T ss_pred CceeeeEEEeeEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-CEEEEEeCCC
Confidence 577999999999999999999999999999999999999999999999998 5899999997
No 2
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}
Probab=99.72 E-value=1.4e-20 Score=123.39 Aligned_cols=64 Identities=30% Similarity=0.552 Sum_probs=62.0
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCC
Q 032430 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (141)
Q Consensus 2 ~~gV~~vh~lr~R~~G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~VhidP~~ 66 (141)
+|||.++|+||+|++|+.+|+|+||.|+++||+++||+|+++++++|+++||+ .+++||+||++
T Consensus 17 ~~gV~~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~I~~~ie~~l~~~~~~-~~v~iHveP~~ 80 (82)
T d2qfia1 17 WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCS 80 (82)
T ss_dssp SSSCSCBCCCCCCTTSCCBCCBSCTTSTTTCSCGGGHHHHHHHHHHTTSSSCC-SSCBCCCCCSC
T ss_pred CCCceeeeEEEEEEeCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEEeCCcc
Confidence 69999999999999999999999999999999999999999999999999996 69999999986
No 3
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}
Probab=97.27 E-value=0.00015 Score=45.69 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=35.4
Q ss_pred HHHHHHHHhcccCC--CCcccccEEEEEeCCeEEEEEEEEcCCCCcC
Q 032430 96 IDAVVYNTLSTKFP--EKMGVERITHHLLHGKILLEVEVSMSPDTSI 140 (141)
Q Consensus 96 i~~~l~~~~~~~~~--~~~~v~~v~lhy~~~~~~v~v~~~~~~~~~i 140 (141)
..++++.++.+ .+ ...++|++..++.+.++.+++++.+|++||+
T Consensus 6 ~~~~I~~~i~~-~~~~~vv~vh~lr~r~~G~~~~vd~hi~v~~~~sv 51 (82)
T d3bypa1 6 EVERIRAFLQE-RIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPV 51 (82)
T ss_dssp HHHHHHHHHHH-HHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBH
T ss_pred HHHHHHHHHHh-CCCCCceeeeEEEeeEECCEEEEEEEEEECCCCCH
Confidence 34455555544 34 4568999999999999999999999999986
No 4
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}
Probab=96.99 E-value=2.4e-05 Score=49.37 Aligned_cols=46 Identities=7% Similarity=0.224 Sum_probs=39.5
Q ss_pred hHHHHHHHHhcccCCCCcccccEEEEEeCCeEEEEEEEEcCCCCcCC
Q 032430 95 DIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIR 141 (141)
Q Consensus 95 ~i~~~l~~~~~~~~~~~~~v~~v~lhy~~~~~~v~v~~~~~~~~~i~ 141 (141)
+..+.++.++.+ +|....+|++..++.++.+++++++.+|++||+.
T Consensus 5 e~~~~I~~~i~~-~~gV~~vh~lr~r~~G~~~~vd~hi~v~~~~sv~ 50 (82)
T d2qfia1 5 EERQEIIDIVTS-WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLV 50 (82)
T ss_dssp THHHHHHHHHTT-SSSCSCBCCCCCCTTSCCBCCBSCTTSTTTCSCG
T ss_pred HHHHHHHHHHHc-CCCceeeeEEEEEEeCCcEEEEEEEEECCCCCHH
Confidence 345666676666 8888999999999999999999999999999973
No 5
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=57.27 E-value=10 Score=22.84 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=42.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCCchhhHHHHHH
Q 032430 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVY 101 (141)
Q Consensus 22 vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~VhidP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~l~ 101 (141)
|++.+.=...++......|..++.++|...||+ ++..|.+-+.....-+ ..|. .--+.+.|++.|.
T Consensus 3 IEl~~dK~~~lp~ga~~aL~~EL~kRl~~~fpD-~~~~v~Vr~~sa~~ls-------v~g~------~k~dK~~i~~iLq 68 (81)
T d1ghha_ 3 IEVTIAKTSPLPAGAIDALAGELSRRIQYAFPD-NEGHVSVRYAAANNLS-------VIGA------TKEDKQRISEILQ 68 (81)
T ss_dssp EEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSS-SCCEEEEEEESSCEEE-------EESC------CHHHHHHHHHHHH
T ss_pred EEEEeecccCCCchHHHHHHHHHHHHHHhhCCC-CcceEEEeecCCCcce-------ecCC------ChhhHHHHHHHHH
Confidence 455555445578788889999999999999997 4433334433222111 0000 0112566888888
Q ss_pred HHhcc
Q 032430 102 NTLST 106 (141)
Q Consensus 102 ~~~~~ 106 (141)
..|..
T Consensus 69 E~wE~ 73 (81)
T d1ghha_ 69 ETWES 73 (81)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 87764
No 6
>d1iwga3 d.58.44.1 (A:567-673) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]}
Probab=55.60 E-value=18 Score=21.79 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=33.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHH-hhCCCeeEEEEEE
Q 032430 22 LDVHIVVDPFSSVSAAHGVGENVRHQIH-KSHPEVSEVFIHI 62 (141)
Q Consensus 22 vd~hI~V~~~lsv~eah~I~~~ve~~l~-~~~p~v~dv~Vhi 62 (141)
+-+-+..|+..|+....+..+++++.|. .+.|++..++.-.
T Consensus 6 ~~v~~~~P~Gasl~~t~~~~~~v~~~l~~~~~~~v~~~~~~~ 47 (107)
T d1iwga3 6 FMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVN 47 (107)
T ss_dssp EEEEEECCSSCCHHHHHHHHHHHHHHHHHTTTTTEEEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHHHHHHhhccCCCCeEEEEEEe
Confidence 4567889999999999999999999875 4678877765433
No 7
>d1mlia_ d.58.4.1 (A:) Muconalactone isomerase, MLI {Pseudomonas putida [TaxId: 303]}
Probab=53.22 E-value=8.5 Score=23.91 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=21.5
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHH
Q 032430 20 LYLDVHIVVDPFSSVSAAHGVGEN 43 (141)
Q Consensus 20 ~~vd~hI~V~~~lsv~eah~I~~~ 43 (141)
++|+++|.+|++++.+++.+|..+
T Consensus 3 f~V~m~V~~P~~m~~~e~~~i~a~ 26 (96)
T d1mlia_ 3 FHVKMTVKLPVDMDPAKATQLKAD 26 (96)
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHH
Confidence 689999999999999999997654
No 8
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}
Probab=41.76 E-value=16 Score=21.85 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=32.0
Q ss_pred eCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 032430 16 AGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (141)
Q Consensus 16 ~G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~Vhid 63 (141)
.|+++.+++.+.-+. -+ .+..|.+.++++|+ +++++.+|.|.+.
T Consensus 34 ~~~~v~v~l~lt~~~-cp--~~~~i~~~i~~al~-~l~gv~~V~V~~~ 77 (91)
T d2cu6a1 34 EPPRAYVRMTLTTPG-CP--LHDSLGEAVRQALS-RLPGVEEVEVEVT 77 (91)
T ss_dssp ETTEEEEEECCSSSS-CC--SSCHHHHHHHHHHH-TSTTCCEEEEEEC
T ss_pred eccccEEEEEcCCCC-Cc--HHHHHHHHHHHHHH-cCCCCceEEEEEE
Confidence 477777776665433 22 55679999999997 5788888888875
No 9
>d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218 {Picrophilus torridus [TaxId: 82076]}
Probab=41.63 E-value=13 Score=24.01 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 032430 33 SVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (141)
Q Consensus 33 sv~eah~I~~~ve~~l~~~~p~v~dv~VhidP~~~ 67 (141)
|.+-+.-+...+++++. ..|.+.+|+|+++....
T Consensus 38 s~~sa~sle~AIeesi~-~QPfvedv~V~I~~~~~ 71 (120)
T d2i52a1 38 NSENASMAEEFIERSTM-IQPFVENVRISINNVKR 71 (120)
T ss_dssp CTTTHHHHHHHHHHHHT-TSTTEEEEEEEECCC--
T ss_pred ChhhHHHHHHHHHHHHh-cCCcEEEEEEEEehhhc
Confidence 34556667788888886 47999999999997543
No 10
>d1ofua2 d.79.2.1 (A:209-317) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}
Probab=36.85 E-value=19 Score=22.34 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=27.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 032430 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62 (141)
Q Consensus 24 ~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~Vhi 62 (141)
++|.-.+++|+.|..++.+.+++.+. |+ +++.+-.
T Consensus 55 v~i~gg~~~~l~e~~~~~~~i~~~~~---~~-a~ii~G~ 89 (109)
T d1ofua2 55 VNITAGPDLSLGEYSDVGNIIEQFAS---EH-ATVKVGT 89 (109)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHSC---TT-SEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhc---cC-cEEEEEE
Confidence 77888999999999999998888664 33 5666543
No 11
>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}
Probab=36.56 E-value=17 Score=23.04 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=27.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 032430 23 DVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62 (141)
Q Consensus 23 d~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~Vhi 62 (141)
=++|...+++|++|.+++.+.+++.+. ++ +++.+-.
T Consensus 58 Lv~i~~g~d~sl~ei~~~~~~i~~~~~---~d-a~ii~G~ 93 (121)
T d1w5fa2 58 VFNITAPSNIRMEEVHEAAMIIRQNSS---ED-ADVKFGL 93 (121)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHTTSC---TT-SEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC---CC-CeEEEee
Confidence 367788999999999999998877553 33 5666544
No 12
>d2vapa2 d.79.2.1 (A:232-354) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=35.95 E-value=19 Score=22.79 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=28.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 032430 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (141)
Q Consensus 24 ~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~Vhid 63 (141)
++|.-++++|+.|..++.+.+++.+. ++ +++.+-..
T Consensus 56 v~i~~~~d~~l~e~~~~~~~i~~~~~---~d-a~ii~G~~ 91 (123)
T d2vapa2 56 IHVMGPEDLTLEEAREVVATVSSRLD---PN-ATIIWGAT 91 (123)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHSC---TT-CEEEEEEE
T ss_pred EEEecCCCccHHHHHHHHHHHHHhcC---CC-ccEEEEEE
Confidence 78889999999999999999988774 33 55655443
No 13
>d2f5ga1 d.58.57.1 (A:2-131) Putative transposase SSO1474 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=32.97 E-value=37 Score=21.45 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=26.5
Q ss_pred EEEEEEEECCCCCHHHHHH-HHHHHHHHHHhhCCCe
Q 032430 21 YLDVHIVVDPFSSVSAAHG-VGENVRHQIHKSHPEV 55 (141)
Q Consensus 21 ~vd~hI~V~~~lsv~eah~-I~~~ve~~l~~~~p~v 55 (141)
+|-+-+.++|++++++.-. +...-...|+++||++
T Consensus 59 HVHllv~~~p~~sis~~v~~lKg~SSr~i~~~f~~l 94 (130)
T d2f5ga1 59 HIHLFVNCPPRYAPSYLANYFKGKSARLILKKFPQL 94 (130)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred cceeeEecCCccCHHHHhhhhcchhHHHHHHHCccc
Confidence 3446778899999999855 6666666778999974
No 14
>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=29.29 E-value=23 Score=20.47 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=23.3
Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEE
Q 032430 17 GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFI 60 (141)
Q Consensus 17 G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~V 60 (141)
|+.+++.+.=....-+|++. .|++.|++.+|++..|.+
T Consensus 34 ~~~v~v~l~GaC~gC~Tl~~------gIe~~L~~~iPei~~V~~ 71 (73)
T d1th5a1 34 GPIVKVRLTGPAAVVRTVRI------AVSKKLREKIPSIQIVQL 71 (73)
T ss_dssp TTEEEECCCSSSSSSSSHHH------HHHHHHHHHCTTCSEEEE
T ss_pred CCEEEEEecCCCcccchHHH------HHHHHHHHHCCCccEEEe
Confidence 44444443333233356555 599999999999877643
No 15
>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase, MSAD {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=27.98 E-value=45 Score=20.91 Aligned_cols=29 Identities=0% Similarity=-0.113 Sum_probs=26.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhC
Q 032430 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSH 52 (141)
Q Consensus 24 ~hI~V~~~lsv~eah~I~~~ve~~l~~~~ 52 (141)
++|.+....|-++-..|++.+.+.+.+.+
T Consensus 3 v~i~l~~g~s~e~~~~l~~~i~~al~e~l 31 (129)
T d2aala1 3 LKFDLFYGRTDAQIKSLLDAAHGAMVDAF 31 (129)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999987
No 16
>d1rq2a2 d.79.2.1 (A:206-312) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.34 E-value=36 Score=20.86 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=27.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 032430 23 DVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62 (141)
Q Consensus 23 d~hI~V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~Vhi 62 (141)
=+++.-.+++|+.|.+++.+.+++.+. ++ +++.+-.
T Consensus 53 Li~i~~g~~~~l~e~~~~~~~i~~~~~---~d-a~ii~G~ 88 (107)
T d1rq2a2 53 LMSIAGGSDLGLFEINEAASLVQDAAH---PD-ANIIFGT 88 (107)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHSC---TT-CEEEEEE
T ss_pred EEEecCCCccchHHHHHHHHHHHHhcC---CC-ceEEEEE
Confidence 368889999999999999999998774 33 4555443
No 17
>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177 {Deinococcus radiodurans [TaxId: 1299]}
Probab=24.27 E-value=77 Score=19.73 Aligned_cols=36 Identities=8% Similarity=0.192 Sum_probs=26.8
Q ss_pred EEEEEEEEECCCCCHHHHHH-HHHHHHHHHHhhCCCe
Q 032430 20 LYLDVHIVVDPFSSVSAAHG-VGENVRHQIHKSHPEV 55 (141)
Q Consensus 20 ~~vd~hI~V~~~lsv~eah~-I~~~ve~~l~~~~p~v 55 (141)
=+|-+-+.++|++|+++.-. +...-...|+++||++
T Consensus 57 DHVHllv~~~p~~svs~~v~~lKg~Ssr~i~~~f~~l 93 (130)
T d2fyxa1 57 DYVHLLLGATPQHVIPDFVKALKGASARRMFSAFPHL 93 (130)
T ss_dssp SEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred ccceeEEecCCCcchHHHhhhhcchhHHHHHHhCchh
Confidence 35566778899999999766 5555566778888864
No 18
>d2ieca1 d.316.1.1 (A:11-123) Hypothetical protein MK0786 {Methanopyrus kandleri [TaxId: 2320]}
Probab=23.42 E-value=34 Score=21.65 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCeeEEEEEEee
Q 032430 33 SVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64 (141)
Q Consensus 33 sv~eah~I~~~ve~~l~~~~p~v~dv~VhidP 64 (141)
|.+-+.-+...+++++. ..|.+.+|+|+++-
T Consensus 28 s~~sa~sle~AIeesi~-~QP~vedv~V~id~ 58 (113)
T d2ieca1 28 SPGTAEEVAKCIERAAL-LQPCVIDARVEVDV 58 (113)
T ss_dssp CGGGHHHHHHHHHHHHT-TSTTEEEEEEEECC
T ss_pred CcccHHHHHHHHHHHHh-cCCcEEEEEEEEEe
Confidence 44556678888888886 47999999999963
No 19
>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=22.83 E-value=73 Score=18.81 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=37.4
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q 032430 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIH 49 (141)
Q Consensus 7 ~vh~lr~R~~G~~~~vd~hI~V~~~lsv~eah~I~~~ve~~l~ 49 (141)
.+-++...+.|+...+.+-|.=+..+++.+.-.++..+...|-
T Consensus 27 eL~~ve~~~~~~~~~l~I~ID~~~gv~iddC~~vSr~is~~LD 69 (90)
T d1ib8a2 27 ELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLD 69 (90)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTT
T ss_pred EEEEEEEEeCCCCEEEEEEEECCCCcCHHHHHHHHHHHHHHhc
Confidence 4567788888999999999999999999999999999888775
No 20
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}
Probab=22.75 E-value=39 Score=21.21 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.2
Q ss_pred CCCCCCchhhHHHHHHHHhcccCCCCcccccEEEEEe
Q 032430 86 SSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLL 122 (141)
Q Consensus 86 ~~~~~p~~~~i~~~l~~~~~~~~~~~~~v~~v~lhy~ 122 (141)
.|..+|+-.+..+.|..++..++|. +...+.|.
T Consensus 21 SCV~aPSSkeTyEWLqaal~RKyp~----~~f~~~Yi 53 (111)
T d1xg8a_ 21 SCVNAPTSKDIYDWLQPLLKRKYPN----ISFKYTYI 53 (111)
T ss_dssp GGSSSCCHHHHHHHHHHHHHHHCTT----SCEEEEEE
T ss_pred hhcCCCCchhHHHHHHHHHhCcCCC----CceEEEEE
Confidence 5678999999999999999988875 46777774
No 21
>d1dhna_ d.96.1.3 (A:) 7,8-dihydroneopterin aldolase {Staphylococcus aureus [TaxId: 1280]}
Probab=21.59 E-value=66 Score=19.48 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhCCCeeEEEEEEee
Q 032430 39 GVGENVRHQIHKSHPEVSEVFIHIDP 64 (141)
Q Consensus 39 ~I~~~ve~~l~~~~p~v~dv~VhidP 64 (141)
.+++.+-+.+...||.+..++|.+.-
T Consensus 75 ~la~~i~~~i~~~~~~v~~v~v~i~K 100 (121)
T d1dhna_ 75 HLAERIANRINSQYNRVMETKVRITK 100 (121)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCccEEEEEEEe
Confidence 45677788888889999889988873
No 22
>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha {Escherichia coli [TaxId: 562]}
Probab=20.74 E-value=72 Score=19.41 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=35.3
Q ss_pred EEEEEE-ECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCC
Q 032430 22 LDVHIV-VDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFS 70 (141)
Q Consensus 22 vd~hI~-V~~~lsv~eah~I~~~ve~~l~~~~p~v~dv~VhidP~~~~~~ 70 (141)
..+.++ +.+. -++.++..+++.+...|+.+..|.+.+++......
T Consensus 23 ~k~~~eplErG----~Gyt~gn~lr~~llSs~sPV~~V~y~Ve~~~~e~~ 68 (105)
T d1bdfa1 23 AKVTLEPLERG----FGHTLGNALRAILLSSMPPVERIAYNVEAARVEQR 68 (105)
T ss_dssp EEEEEEEEETT----HHHHHHHHHHHHHTTSCCSEEEEEEECCBCCCSSC
T ss_pred EEEEEEEccCC----cccccccccchhhhhcccceeEEEEeeeeeecCCC
Confidence 444443 4444 58999999999999999999999999998876533
Done!