RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032430
(141 letters)
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 74.0 bits (182), Expect = 2e-18
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 6 QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
HR+R RR G+ ++++ I VD SV AH + +R ++ K ++ +V IH++P
Sbjct: 26 HNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPL 85
Query: 66 Y 66
Sbjct: 86 G 86
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
PDB: 3byr_A
Length = 94
Score = 68.5 bits (168), Expect = 2e-16
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
H L+ RRAG +L+ H+VV + V AH + + + + ++ P + + IH++P
Sbjct: 29 EVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPE 86
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 68.4 bits (168), Expect = 7e-15
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
G H LR R++G + ++ +H+ ++ + AH V + V I + P +V IH DP
Sbjct: 223 GAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGS-DVIIHQDPC 280
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC
transporter, periplasmic SO binding protein,
bicarbonate-binding protein; 1.35A {Synechocystis SP}
PDB: 2i48_A 2i4b_A 2i4c_A
Length = 429
Score = 29.3 bits (65), Expect = 0.36
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 15 RAGSSLYLDVHIVVDPFSSVSAAHGVGENVR--HQIHKSHPE----VSEVFIHIDPAYFQ 68
R G+ +D DP+ +G QI HPE + ++ +P +
Sbjct: 209 RNGT---MDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATK 265
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 29.4 bits (67), Expect = 0.39
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 68 QFSPSTMDQLGLE-GCKAHSSNICVDDLDIDAVVYNTLSTKF 108
QF L LE G + + D+DA VY + + F
Sbjct: 236 QFGGQPQKILALEMGGNN--PLVVEEVADLDAAVYTIIQSAF 275
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta
protein; 1.50A {Synechocystis SP}
Length = 417
Score = 28.5 bits (63), Expect = 0.84
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 22 LDVHIVVDPFSSVSAAHGVGENVR--HQIHKSHPE----VSEVFIHIDPAYFQ 68
++ V +P+ + GVG Q+ K HPE + ++ +P +
Sbjct: 205 MESFCVGEPWPLQTVNQGVGYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAK 257
>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural GENO PSI,
protein structure initiative, midwest center for struc
genomics, MCSG; HET: NAD 1PE; 2.15A {Escherichia coli}
Length = 385
Score = 28.1 bits (63), Expect = 0.87
Identities = 5/42 (11%), Positives = 9/42 (21%)
Query: 26 IVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67
+ + + Q I I+P F
Sbjct: 263 AMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELF 304
>1rfm_A L-sulfolactate dehydrogenase; methanogens, coenzyme M,
hyperthermostable, Pro-S hydrogen transfer; HET: NAD;
2.50A {Methanocaldococcus jannaschii} SCOP: c.122.1.1
PDB: 2x06_A*
Length = 344
Score = 27.7 bits (62), Expect = 1.2
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 26 IVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67
+ ++ S++ A + + ++FI I+P +F
Sbjct: 231 LAIEMLSAIGGAEVGTKVKGTANPEERCTKGDLFIAINPEFF 272
>3uoe_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.31A {Sinorhizobium meliloti}
Length = 357
Score = 26.9 bits (60), Expect = 2.5
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 26 IVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAYFQFSPSTMDQL 77
+ ++ + A + +V + HP ++ I IDP+ S +
Sbjct: 254 LAIELLVAALAGSNLAPDVNGTLDDIHPANKGDLLILIDPSAGAGSIPALAAY 306
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function,
protein structure INI PSI-2; 2.51A {Corynebacterium
diphtheriae nctc 13129ORGANISM_TAXID}
Length = 507
Score = 26.2 bits (58), Expect = 4.3
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 74 MDQLG-LEGCKAHSSNI 89
+DQL L GC H++ I
Sbjct: 452 LDQLKNLRGCDVHTTTI 468
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein
structure initiative, PSI, joint center for structural
genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1
PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Length = 350
Score = 26.2 bits (57), Expect = 5.0
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 38 HGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF----SPSTMDQLGLEGCKAHSSNICVDD 93
G+ + ++ + V++H P+Y+ + + G +AH +++
Sbjct: 256 LREGQEAILKRYQVTGDRLRVYLHYLPSYYHLHVHFTALGFEAPGSGVERAHLLAQVIEN 315
Query: 94 LDIDAVVYNTLSTKF 108
L+ D Y + F
Sbjct: 316 LECDPKHYQQRTLTF 330
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center
for structural genomics of I diseases, csgid,
oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Length = 223
Score = 25.8 bits (56), Expect = 5.8
Identities = 17/97 (17%), Positives = 25/97 (25%), Gaps = 15/97 (15%)
Query: 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEV---------FIHIDPAYFQ-- 68
L ++ H VD SSVS V ++ + + ID
Sbjct: 8 LIINAHPKVDDTSSVSIK--VFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAW 65
Query: 69 FSPSTMDQLGLEGCKAH--SSNICVDDLDIDAVVYNT 103
+L E K S I + V
Sbjct: 66 EKQGNGQELTREEQKVTERMSEILQQFKSANTYVIVL 102
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 25.6 bits (57), Expect = 7.0
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 72 STMDQLGLE--GCKAHSSNICVDDLDIDAVVYNTLSTKF 108
+ M + LE G I +DD D+ +S F
Sbjct: 251 AKMIPVVLELGG---KDPAIVLDDADLKLTASQIVSGAF 286
>3uxj_A NADPH-dependent 7-cyano-7-deazaguanine reductase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: MSE PRF NAP; 1.40A {Vibrio
cholerae o1 biovar el tor} PDB: 3s19_A* 3rjb_A* 3bp1_A*
3uxv_A* 3rzp_A* 3rj4_A* 3rzq_A*
Length = 290
Score = 25.4 bits (55), Expect = 8.8
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 84 AHSSNICVDDLDIDAVVYN----TLSTKFPEKMGVERITHHLLHGKILL 128
C+DD DI+ Y L + E + HLL L+
Sbjct: 151 VTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNCLI 199
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C
transferase; 1.60A {Pyrobaculum aerophilum}
Length = 409
Score = 25.2 bits (56), Expect = 9.7
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 7/24 (29%)
Query: 14 RRAGSSLYLDVHIVVDPFSSVSAA 37
S+L D +SSV+AA
Sbjct: 224 HVVASTL-------SDLYSSVAAA 240
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.400
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,216,271
Number of extensions: 122208
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 24
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)