Query 032431
Match_columns 141
No_of_seqs 116 out of 1066
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 14:00:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032431.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032431hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.9 9.3E-25 2E-29 152.0 10.6 90 22-111 11-100 (100)
2 KOG0014 MADS box transcription 97.2 0.0001 2.2E-09 55.9 0.9 73 28-100 112-189 (195)
3 PF06005 DUF904: Protein of un 95.3 0.3 6.5E-06 32.0 8.6 49 57-110 1-49 (72)
4 COG3074 Uncharacterized protei 91.8 2.5 5.4E-05 27.7 7.9 50 57-111 1-50 (79)
5 PRK15422 septal ring assembly 90.2 4 8.8E-05 27.2 8.4 43 57-104 1-43 (79)
6 PF06156 DUF972: Protein of un 89.1 5.1 0.00011 28.1 8.3 51 59-114 7-57 (107)
7 COG2433 Uncharacterized conser 88.9 8.8 0.00019 34.8 11.4 100 32-140 431-550 (652)
8 PRK13169 DNA replication intia 86.7 8.3 0.00018 27.3 8.2 49 59-112 7-55 (110)
9 PF06698 DUF1192: Protein of u 85.2 1.7 3.6E-05 27.5 3.6 30 48-77 12-41 (59)
10 cd07429 Cby_like Chibby, a nuc 83.1 2.4 5.2E-05 30.0 4.1 25 87-111 73-97 (108)
11 PF01166 TSC22: TSC-22/dip/bun 79.8 5.6 0.00012 25.1 4.5 28 82-109 17-44 (59)
12 TIGR03752 conj_TIGR03752 integ 79.8 40 0.00086 29.7 11.2 92 28-135 71-162 (472)
13 KOG1962 B-cell receptor-associ 79.7 28 0.00061 27.5 9.9 78 34-111 131-211 (216)
14 PF00170 bZIP_1: bZIP transcri 78.7 13 0.00029 23.1 6.5 39 71-113 15-53 (64)
15 PF07106 TBPIP: Tat binding pr 78.3 14 0.00031 27.3 7.2 49 31-80 117-165 (169)
16 smart00338 BRLZ basic region l 77.4 15 0.00032 22.9 6.5 41 71-115 15-55 (65)
17 KOG4797 Transcriptional regula 77.3 14 0.0003 26.3 6.4 44 64-107 45-88 (123)
18 KOG4797 Transcriptional regula 70.9 21 0.00045 25.4 5.9 29 80-108 68-96 (123)
19 PF08317 Spc7: Spc7 kinetochor 70.5 59 0.0013 26.8 12.3 63 52-114 201-265 (325)
20 PF10504 DUF2452: Protein of u 70.0 35 0.00075 25.8 7.4 44 58-101 28-74 (159)
21 PF07716 bZIP_2: Basic region 67.4 25 0.00053 21.2 6.6 39 71-113 14-52 (54)
22 COG4467 Regulator of replicati 66.5 43 0.00093 23.8 6.8 48 59-111 7-54 (114)
23 TIGR02338 gimC_beta prefoldin, 62.8 48 0.001 22.9 7.4 46 65-111 61-106 (110)
24 PRK10884 SH3 domain-containing 62.3 73 0.0016 24.8 8.5 72 32-108 95-168 (206)
25 PF06156 DUF972: Protein of un 61.2 35 0.00076 23.9 5.6 35 80-114 16-50 (107)
26 PF10224 DUF2205: Predicted co 57.7 52 0.0011 21.9 5.7 32 85-116 36-67 (80)
27 PF13758 Prefoldin_3: Prefoldi 57.2 29 0.00063 24.1 4.6 17 26-42 8-24 (99)
28 smart00787 Spc7 Spc7 kinetocho 57.0 1.1E+02 0.0024 25.3 11.7 80 35-114 177-260 (312)
29 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.0 68 0.0015 22.8 10.3 29 83-111 102-130 (132)
30 PF09789 DUF2353: Uncharacteri 56.5 1.2E+02 0.0026 25.4 9.8 79 34-117 34-117 (319)
31 smart00340 HALZ homeobox assoc 56.4 37 0.00081 20.0 4.2 29 89-117 8-36 (44)
32 PF14645 Chibby: Chibby family 56.0 23 0.0005 25.2 4.0 24 87-110 72-95 (116)
33 PRK00888 ftsB cell division pr 54.9 49 0.0011 22.9 5.5 32 83-114 31-62 (105)
34 PRK09343 prefoldin subunit bet 53.8 76 0.0017 22.4 8.1 50 68-118 68-117 (121)
35 PF11365 DUF3166: Protein of u 53.5 67 0.0015 22.2 5.9 32 82-113 11-42 (96)
36 KOG0930 Guanine nucleotide exc 53.4 52 0.0011 27.5 6.1 43 54-105 8-50 (395)
37 PF08172 CASP_C: CASP C termin 53.3 1.1E+02 0.0024 24.5 8.0 57 26-117 82-138 (248)
38 cd00632 Prefoldin_beta Prefold 53.0 70 0.0015 21.7 7.9 100 2-112 2-103 (105)
39 PRK10884 SH3 domain-containing 52.0 1.1E+02 0.0024 23.8 10.6 11 35-45 91-101 (206)
40 PF06005 DUF904: Protein of un 51.0 66 0.0014 20.9 6.2 36 79-114 11-46 (72)
41 PF14775 NYD-SP28_assoc: Sperm 49.1 49 0.0011 20.7 4.3 37 3-49 23-59 (60)
42 PF04849 HAP1_N: HAP1 N-termin 48.4 35 0.00075 28.4 4.5 32 87-118 161-192 (306)
43 PRK13729 conjugal transfer pil 47.9 1.1E+02 0.0023 27.1 7.6 43 64-111 80-122 (475)
44 PRK13169 DNA replication intia 47.8 79 0.0017 22.3 5.7 34 80-113 16-49 (110)
45 PF15243 ANAPC15: Anaphase-pro 46.2 28 0.00061 23.8 3.1 21 60-80 28-48 (92)
46 PF05529 Bap31: B-cell recepto 46.2 1.3E+02 0.0027 22.6 8.2 54 60-113 125-188 (192)
47 PF15058 Speriolin_N: Sperioli 46.1 79 0.0017 24.7 5.8 34 80-114 13-46 (200)
48 PF09798 LCD1: DNA damage chec 45.9 2E+02 0.0043 26.5 9.2 55 60-114 4-61 (654)
49 PF10226 DUF2216: Uncharacteri 45.3 1.4E+02 0.003 23.2 7.1 16 65-80 46-61 (195)
50 TIGR02449 conserved hypothetic 43.7 86 0.0019 20.1 7.7 44 61-109 1-44 (65)
51 PF11068 YlqD: YlqD protein; 42.8 1.1E+02 0.0023 22.3 5.9 15 127-141 117-131 (131)
52 PF10211 Ax_dynein_light: Axon 42.2 1.5E+02 0.0033 22.5 8.9 16 34-49 124-139 (189)
53 PRK11637 AmiB activator; Provi 41.7 2.2E+02 0.0048 24.2 11.3 75 26-109 50-126 (428)
54 KOG0709 CREB/ATF family transc 40.9 70 0.0015 28.2 5.3 60 55-114 232-314 (472)
55 TIGR02894 DNA_bind_RsfA transc 40.5 1.6E+02 0.0035 22.3 11.6 57 54-110 77-135 (161)
56 KOG4643 Uncharacterized coiled 39.3 2.3E+02 0.0049 27.7 8.7 58 57-114 233-292 (1195)
57 PF03980 Nnf1: Nnf1 ; InterPr 39.1 1.2E+02 0.0027 20.6 5.8 46 54-112 61-106 (109)
58 PF11629 Mst1_SARAH: C termina 38.9 61 0.0013 19.7 3.4 12 54-65 5-16 (49)
59 KOG3119 Basic region leucine z 38.8 1.1E+02 0.0025 24.6 6.1 26 89-114 218-243 (269)
60 PF02151 UVR: UvrB/uvrC motif; 38.6 70 0.0015 17.6 4.4 33 61-93 3-35 (36)
61 PF04880 NUDE_C: NUDE protein, 38.4 71 0.0015 24.2 4.5 43 62-109 2-47 (166)
62 TIGR02209 ftsL_broad cell divi 38.1 1.1E+02 0.0023 19.6 5.2 33 82-114 27-59 (85)
63 TIGR02449 conserved hypothetic 38.0 1.1E+02 0.0024 19.6 5.5 34 83-116 4-37 (65)
64 PF07106 TBPIP: Tat binding pr 37.7 1.6E+02 0.0035 21.6 7.4 62 53-114 65-137 (169)
65 KOG3759 Uncharacterized RUN do 37.6 3E+02 0.0066 24.6 10.1 52 53-111 198-252 (621)
66 PF07498 Rho_N: Rho terminatio 37.3 7.8 0.00017 22.5 -0.7 32 53-85 1-32 (43)
67 PF04977 DivIC: Septum formati 37.0 1.1E+02 0.0023 19.1 5.5 30 83-112 21-50 (80)
68 PF04111 APG6: Autophagy prote 35.8 2.5E+02 0.0054 23.1 11.3 18 60-77 64-81 (314)
69 KOG0995 Centromere-associated 35.0 3.5E+02 0.0076 24.6 9.9 110 23-135 301-418 (581)
70 PRK09413 IS2 repressor TnpA; R 34.2 1.6E+02 0.0035 20.4 7.0 28 83-110 75-102 (121)
71 PF15397 DUF4618: Domain of un 32.7 2.7E+02 0.0059 22.6 8.7 38 77-114 184-221 (258)
72 PHA03155 hypothetical protein; 32.3 1.9E+02 0.0041 20.7 8.1 52 24-75 9-60 (115)
73 PF04508 Pox_A_type_inc: Viral 32.0 70 0.0015 16.4 2.5 16 31-46 2-17 (23)
74 TIGR00012 L29 ribosomal protei 31.2 93 0.002 18.8 3.5 27 53-79 1-27 (55)
75 PF12537 DUF3735: Protein of u 29.2 1E+02 0.0022 19.7 3.6 25 59-83 47-71 (72)
76 PHA02109 hypothetical protein 29.0 1.3E+02 0.0029 23.3 4.6 33 36-71 170-204 (233)
77 PF04999 FtsL: Cell division p 28.7 1.8E+02 0.0038 19.2 5.5 35 81-115 37-71 (97)
78 KOG3684 Ca2+-activated K+ chan 27.9 3.2E+02 0.0069 24.2 7.3 63 40-106 406-468 (489)
79 PF06937 EURL: EURL protein; 27.7 95 0.0021 25.5 3.8 38 41-78 203-240 (285)
80 PF11460 DUF3007: Protein of u 27.5 46 0.001 23.4 1.8 19 52-70 85-103 (104)
81 PF14282 FlxA: FlxA-like prote 26.5 2.2E+02 0.0047 19.6 7.6 56 30-102 19-74 (106)
82 COG4467 Regulator of replicati 26.5 1.7E+02 0.0036 20.8 4.4 30 84-113 20-49 (114)
83 PRK04778 septation ring format 26.4 4.6E+02 0.01 23.3 9.7 58 35-92 228-295 (569)
84 PRK14127 cell division protein 25.7 2.4E+02 0.0052 19.8 6.3 28 87-114 38-65 (109)
85 PHA03155 hypothetical protein; 25.2 89 0.0019 22.3 2.9 25 88-112 10-34 (115)
86 PRK15422 septal ring assembly 25.1 2.2E+02 0.0047 19.0 5.5 32 80-111 12-43 (79)
87 PF03250 Tropomodulin: Tropomo 25.0 51 0.0011 24.5 1.7 18 54-71 21-38 (147)
88 cd04787 HTH_HMRTR_unk Helix-Tu 24.8 2.5E+02 0.0055 19.7 7.8 56 56-112 57-112 (133)
89 PRK00736 hypothetical protein; 24.5 1.9E+02 0.0042 18.3 5.2 19 95-113 35-53 (68)
90 PF04102 SlyX: SlyX; InterPro 24.3 1.6E+02 0.0034 18.6 3.8 29 85-113 24-52 (69)
91 cd08888 SRPBCC_PITPNA-B_like L 24.3 1.6E+02 0.0035 23.9 4.6 41 37-77 215-257 (258)
92 TIGR01950 SoxR redox-sensitive 24.3 2.8E+02 0.0061 20.0 5.9 55 56-110 57-111 (142)
93 PF12548 DUF3740: Sulfatase pr 24.2 1.4E+02 0.0031 22.0 4.0 25 84-108 111-135 (145)
94 COG4026 Uncharacterized protei 23.4 4E+02 0.0087 21.5 8.7 59 50-111 96-160 (290)
95 KOG2189 Vacuolar H+-ATPase V0 23.2 5.6E+02 0.012 24.4 8.2 66 37-107 56-134 (829)
96 PF12761 End3: Actin cytoskele 23.1 2.3E+02 0.0049 22.1 5.1 16 61-76 104-119 (195)
97 PRK09514 zntR zinc-responsive 22.5 3E+02 0.0065 19.7 6.6 55 56-110 58-112 (140)
98 PRK13923 putative spore coat p 22.4 3.5E+02 0.0077 20.6 6.0 23 86-108 111-133 (170)
99 PRK00306 50S ribosomal protein 22.0 1.4E+02 0.003 18.7 3.1 29 52-80 4-32 (66)
100 PF01920 Prefoldin_2: Prefoldi 21.9 2.4E+02 0.0051 18.5 4.5 27 85-111 75-101 (106)
101 cd04769 HTH_MerR2 Helix-Turn-H 21.4 2.8E+02 0.0061 19.0 6.1 55 56-110 56-110 (116)
102 cd04786 HTH_MerR-like_sg7 Heli 21.1 3.1E+02 0.0068 19.4 6.1 56 56-113 57-112 (131)
103 KOG4196 bZIP transcription fac 21.1 3.4E+02 0.0074 19.9 6.7 25 86-110 81-105 (135)
104 PF00831 Ribosomal_L29: Riboso 21.0 90 0.002 19.1 2.1 28 53-80 3-30 (58)
105 PF14723 SSFA2_C: Sperm-specif 21.0 1.1E+02 0.0023 23.5 2.8 18 61-78 160-177 (179)
106 PF15070 GOLGA2L5: Putative go 20.5 6.5E+02 0.014 23.0 8.1 86 26-114 83-174 (617)
107 PF07558 Shugoshin_N: Shugoshi 20.2 1.5E+02 0.0033 17.4 2.8 31 80-110 15-45 (46)
108 COG0216 PrfA Protein chain rel 20.2 5.5E+02 0.012 21.9 10.1 89 2-105 10-102 (363)
109 KOG2417 Predicted G-protein co 20.2 2.8E+02 0.0061 24.0 5.4 30 59-88 185-214 (462)
110 KOG3850 Predicted membrane pro 20.1 3.4E+02 0.0073 23.7 5.8 55 26-88 320-374 (455)
111 KOG0837 Transcriptional activa 20.1 5E+02 0.011 21.3 6.8 50 57-110 199-251 (279)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.92 E-value=9.3e-25 Score=151.96 Aligned_cols=90 Identities=37% Similarity=0.517 Sum_probs=86.3
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 22 SLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEE 101 (141)
Q Consensus 22 ~~~~~~~~~e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~ee 101 (141)
....+.|..++++|+.+++.|+..+|||+|+||++||++||++||++|+.||.+||+||+++|+++|+.|++|++.+.++
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e 90 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 032431 102 NLRLKQRQGL 111 (141)
Q Consensus 102 N~~L~~~~~~ 111 (141)
|..|+.++.+
T Consensus 91 n~~L~~~~~e 100 (100)
T PF01486_consen 91 NNQLRQKIEE 100 (100)
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=97.24 E-value=0.0001 Score=55.91 Aligned_cols=73 Identities=30% Similarity=0.332 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHH---hhcccccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 032431 28 ESSTYAILSKEMADRTRE---LRQMKGEELQELNM-EELMRLEKSLEGGLSRVVQTKGERLLNEID-ALRRKEAQLTE 100 (141)
Q Consensus 28 ~~~e~~~Lk~e~e~L~~~---~R~l~GedL~~Lsl-~EL~~LE~qLe~al~~IR~rK~qll~~~i~-~Lk~Ke~~L~e 100 (141)
+......++...+.+... +++++|+++.++++ .+|..+|.+++.++..+|..+...+..++. .++.++..+..
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
T KOG0014|consen 112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLEA 189 (195)
T ss_pred hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhccc
Confidence 445556677777777644 99999999999999 999999999999999999999999888776 55555444443
No 3
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.32 E-value=0.3 Score=32.02 Aligned_cols=49 Identities=29% Similarity=0.445 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 57 Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
+|++-|.+||..+..|+..|.. +..+++.|+.+...|.++|..|.....
T Consensus 1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5789999999999999999875 445567777775555555555555443
No 4
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.81 E-value=2.5 Score=27.74 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 57 Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
+|++=|.+||..+..|+.-| .++.-+|+.|+.|...|..+-..+.....+
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~rea 50 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREA 50 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence 57888999999999999886 466678888888877666665555554443
No 5
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.17 E-value=4 Score=27.23 Aligned_cols=43 Identities=23% Similarity=0.421 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR 104 (141)
Q Consensus 57 Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~ 104 (141)
+|++=|.+||..+..|+.-|- ++.-+|+.|+.|-..|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999874 5666778888876666665444
No 6
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=89.10 E-value=5.1 Score=28.14 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 59 l~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
++.|.+||++|..-+..|..-|.+ +..+-..-..|.-||..|+..+.+...
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~-----~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQ-----LQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888999998888887765544 345556666677788888888877654
No 7
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.86 E-value=8.8 Score=34.76 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 32 YAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVV-----QTKGERLLNEIDALRRKEAQLTEENLRLK 106 (141)
Q Consensus 32 ~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR-----~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~ 106 (141)
+++|..+|..|+..+-.+- +++..||.+|+..-.+++ .|+.+.+...|..|+++...-...-..|.
T Consensus 431 ve~l~~e~~~L~~~~ee~k---------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 431 VERLEEENSELKRELEELK---------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544443 788999999998888877 34555666788888877666666666677
Q ss_pred HHHHhHHhhhhc-------CC--------CCCCcchhhheecccceecc
Q 032431 107 QRQGLIQMYKAT-------HL--------TPSSAVHLEIILKTGRVLTL 140 (141)
Q Consensus 107 ~~~~~~~~~~~~-------~~--------~~~s~~~~~~~~~~~~~~~~ 140 (141)
.++......... .. ......+...+++.|+|+-+
T Consensus 502 ~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~gik~GDvi~v 550 (652)
T COG2433 502 RKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILV 550 (652)
T ss_pred HHHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHHhhccccCcEEEE
Confidence 776665433321 11 11112244678889988754
No 8
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=86.66 E-value=8.3 Score=27.28 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032431 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 59 l~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
++-+.+||+|+..-+..+..-|.+ +..+-.....|.-||..|+..+.+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999988887776544 3556666677888888888888875
No 9
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=85.15 E-value=1.7 Score=27.51 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=20.7
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032431 48 QMKGEELQELNMEELMRLEKSLEGGLSRVV 77 (141)
Q Consensus 48 ~l~GedL~~Lsl~EL~~LE~qLe~al~~IR 77 (141)
+..|+||+.||++||..==..|+.=+.+++
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLE 41 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999764344443333333
No 10
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=83.05 E-value=2.4 Score=29.96 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 87 EIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 87 ~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
++..+++|...|+|||+.|+-++.-
T Consensus 73 e~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999988753
No 11
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=79.80 E-value=5.6 Score=25.07 Aligned_cols=28 Identities=43% Similarity=0.497 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 82 ERLLNEIDALRRKEAQLTEENLRLKQRQ 109 (141)
Q Consensus 82 qll~~~i~~Lk~Ke~~L~eeN~~L~~~~ 109 (141)
+.+.++|..|..+...|+.||..|+...
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3556667777777777777777776543
No 12
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.75 E-value=40 Score=29.70 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 28 ESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (141)
Q Consensus 28 ~~~e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~ 107 (141)
++.++..+..+++.|..+...+. +....+..+++.++...|. -+.++.+.|+.....+...-..|..
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~~----~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSETQ----ELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555554444331 2334577788888877663 3344555665555555555555555
Q ss_pred HHHhHHhhhhcCCCCCCcchhhheeccc
Q 032431 108 RQGLIQMYKATHLTPSSAVHLEIILKTG 135 (141)
Q Consensus 108 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 135 (141)
++.... ....+.++..++||++..|
T Consensus 138 ~l~~~~---~~~~~~~~d~P~GlG~~~g 162 (472)
T TIGR03752 138 RLAGVL---TGPSGGGSDLPVGLGLDPG 162 (472)
T ss_pred HHhhcc---ccCCCCCCCCCcccCCCCC
Confidence 554211 1111333355777777654
No 13
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.73 E-value=28 Score=27.49 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhhcccc-cCCCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 34 ILSKEMADRTRELRQMKG-EELQELNMEELMRLEKSLEGGLSRVVQT--KGERLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 34 ~Lk~e~e~L~~~~R~l~G-edL~~Lsl~EL~~LE~qLe~al~~IR~r--K~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
..+++++.++.....-.+ +.=.+....|+..|+..++.--...-.. +..-|..+.+.+.+....|-|+|..|+.++.
T Consensus 131 ~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 131 KAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 345566666655555333 1122344567777777776655444333 3334566777777778888888888888875
Q ss_pred h
Q 032431 111 L 111 (141)
Q Consensus 111 ~ 111 (141)
.
T Consensus 211 ~ 211 (216)
T KOG1962|consen 211 S 211 (216)
T ss_pred c
Confidence 3
No 14
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=78.66 E-value=13 Score=23.06 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 71 ~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
.|..+-|.||... +..|..++..|..+|..|...+....
T Consensus 15 ~AAr~~R~RKk~~----~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 15 EAARRSRQRKKQY----IEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888665 46667777777777777766655443
No 15
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.29 E-value=14 Score=27.33 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 032431 31 TYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTK 80 (141)
Q Consensus 31 e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK 80 (141)
.+..|..++..++..+..+.+ +-...|.+|...++.....+....|.||
T Consensus 117 ~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 117 EIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444 3333555555555555555555555544
No 16
>smart00338 BRLZ basic region leucin zipper.
Probab=77.44 E-value=15 Score=22.90 Aligned_cols=41 Identities=32% Similarity=0.336 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 032431 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMY 115 (141)
Q Consensus 71 ~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~~ 115 (141)
.|..+-|.+|... +..|..++..|..+|..|..++..+...
T Consensus 15 ~aA~~~R~rKk~~----~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 15 EAARRSRERKKAE----IEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777654 5778888888888888888887765443
No 17
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=77.33 E-value=14 Score=26.28 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 64 RLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (141)
Q Consensus 64 ~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~ 107 (141)
.+.+.+|.|+.-|.+-=+=-..++++.||.+.+.|.+.|..|..
T Consensus 45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~ 88 (123)
T KOG4797|consen 45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALER 88 (123)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666653322211234555555555554444444433
No 18
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=70.94 E-value=21 Score=25.42 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 80 KGERLLNEIDALRRKEAQLTEENLRLKQR 108 (141)
Q Consensus 80 K~qll~~~i~~Lk~Ke~~L~eeN~~L~~~ 108 (141)
-.+.+.++|..|..+...|+.||..|+.-
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678899999999999999999999763
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.49 E-value=59 Score=26.76 Aligned_cols=63 Identities=24% Similarity=0.277 Sum_probs=49.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 52 EELQELNMEELMRLEKSLEGGLSRVVQTKGERL--LNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 52 edL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll--~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
.+++.++..+|..+-..|...-..|..+|..+- ..++..+..+...+.++...+...|.+...
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999888877754 457777777777777777777777766543
No 20
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=70.05 E-value=35 Score=25.76 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 032431 58 NMEELMRLEKSLEGGLSRVVQT---KGERLLNEIDALRRKEAQLTEE 101 (141)
Q Consensus 58 sl~EL~~LE~qLe~al~~IR~r---K~qll~~~i~~Lk~Ke~~L~ee 101 (141)
+..||..|-++++.|..-||++ |-.+|.+||..|+++-+.+.++
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~ 74 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEE 74 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999965 6667788888888876655543
No 21
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=67.40 E-value=25 Score=21.16 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 71 ~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
.|..+-|.+|-+. +..+..++..|..+|..|..++..+.
T Consensus 14 ~AA~r~R~rkk~~----~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 14 EAARRSRQRKKQR----EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667666444 56778888889999999988887654
No 22
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=66.47 E-value=43 Score=23.76 Aligned_cols=48 Identities=25% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 59 l~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
++.+..||++|-.-+..|-.-|.++ ..+=.....|.-||..|+..+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence 5678889999988887766655443 34444455566677777777766
No 23
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.85 E-value=48 Score=22.86 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 65 LEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 65 LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
++...+.++..+..|+..+ ...|..+.++...+...-..+...+.+
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665544 566777777766666666666555544
No 24
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.27 E-value=73 Score=24.81 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 32 YAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVV--QTKGERLLNEIDALRRKEAQLTEENLRLKQR 108 (141)
Q Consensus 32 ~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR--~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~ 108 (141)
+..+.+++..++..+..+-++ .+ .....+.+.+..+-..|- ...++-+.+++..++.+...+..+|..+...
T Consensus 95 lp~le~el~~l~~~l~~~~~~-~~----~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNT-WN----QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666665555554332 11 333344443333333332 2233344555555555555555555555543
No 25
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=61.25 E-value=35 Score=23.88 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 80 KGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 80 K~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
....|..++..|+.....|.+||..|+..-.....
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999988766544
No 26
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=57.75 E-value=52 Score=21.93 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 032431 85 LNEIDALRRKEAQLTEENLRLKQRQGLIQMYK 116 (141)
Q Consensus 85 ~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~~~ 116 (141)
.+.|+..+..-..|..+|..|..-|..+....
T Consensus 36 ~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 36 SDRVEEVKEENEKLESENEYLQQYIGNLMSSS 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566777777789999999999998875543
No 27
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=57.20 E-value=29 Score=24.14 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q 032431 26 QLESSTYAILSKEMADR 42 (141)
Q Consensus 26 ~~~~~e~~~Lk~e~e~L 42 (141)
+.|.+||+.|+.+++.|
T Consensus 8 q~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 8 QTWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67899999999999988
No 28
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.03 E-value=1.1e+02 Score=25.29 Aligned_cols=80 Identities=24% Similarity=0.269 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhcccc--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 35 LSKEMADRTRELRQMKG--EELQELNMEELMRLEKSLEGGLSRVVQTKGERL--LNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 35 Lk~e~e~L~~~~R~l~G--edL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll--~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
++.....|+...+++.- +++++|+.++|..+-..|..-...|...+.++- ..++..+..+.....+.-..+..+|.
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444332 568899999999999999998888888777754 35666666666666666666666666
Q ss_pred hHHh
Q 032431 111 LIQM 114 (141)
Q Consensus 111 ~~~~ 114 (141)
+...
T Consensus 257 ~ae~ 260 (312)
T smart00787 257 EAEK 260 (312)
T ss_pred HHHH
Confidence 5544
No 29
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.02 E-value=68 Score=22.81 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 83 RLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 83 ll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
.+..+|..++++...|...|+.|+.+|..
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999999999999864
No 30
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.48 E-value=1.2e+02 Score=25.41 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhccc-----ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 34 ILSKEMADRTRELRQMK-----GEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQR 108 (141)
Q Consensus 34 ~Lk~e~e~L~~~~R~l~-----GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~ 108 (141)
.|+.....|++..+-+. +.|-...+..+= ..|..-+...|.+- .-+..++..|+++...++.+++.|+.+
T Consensus 34 qLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~----~~La~lL~~sre~N-k~L~~Ev~~Lrqkl~E~qGD~KlLR~~ 108 (319)
T PF09789_consen 34 QLQERYQALKKKYRELIQEAAGFGDPSIPPEKEN----KNLAQLLSESREQN-KKLKEEVEELRQKLNEAQGDIKLLREK 108 (319)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccCCccCCcccch----hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 45555556665555444 222222222222 33334444444443 345678999999999999999999999
Q ss_pred HHhHHhhhh
Q 032431 109 QGLIQMYKA 117 (141)
Q Consensus 109 ~~~~~~~~~ 117 (141)
+........
T Consensus 109 la~~r~~~~ 117 (319)
T PF09789_consen 109 LARQRVGDE 117 (319)
T ss_pred HHhhhhhhc
Confidence 987655443
No 31
>smart00340 HALZ homeobox associated leucin zipper.
Probab=56.41 E-value=37 Score=20.04 Aligned_cols=29 Identities=34% Similarity=0.403 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 032431 89 DALRRKEAQLTEENLRLKQRQGLIQMYKA 117 (141)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~~~~~~~~~~~~ 117 (141)
+-|++=-..|.++|..|.+.+.+..+.+.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45777778899999999999998866553
No 32
>PF14645 Chibby: Chibby family
Probab=55.98 E-value=23 Score=25.16 Aligned_cols=24 Identities=42% Similarity=0.451 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 87 EIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 87 ~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
....++++.+.|.|||+.|+-++.
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777888888777643
No 33
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.88 E-value=49 Score=22.92 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 83 RLLNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 83 ll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
.+..++..++++...+..+|..|..++....+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455666666666666777777666665543
No 34
>PRK09343 prefoldin subunit beta; Provisional
Probab=53.81 E-value=76 Score=22.40 Aligned_cols=50 Identities=16% Similarity=0.062 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Q 032431 68 SLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKAT 118 (141)
Q Consensus 68 qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~~~~~ 118 (141)
..+.+...|..|+ +.+...|..+.++...+.+.-..+..++.+.-...++
T Consensus 68 d~~e~~~~l~~r~-E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 68 DKTKVEKELKERK-ELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445555554444 3445677777777777777777777777665544433
No 35
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=53.50 E-value=67 Score=22.18 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 82 ERLLNEIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 82 qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
|+..++.+-|+++...+.++|..|..++....
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999887633
No 36
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.41 E-value=52 Score=27.50 Aligned_cols=43 Identities=37% Similarity=0.440 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 54 LQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105 (141)
Q Consensus 54 L~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L 105 (141)
-.+||..|=..|+ +||.||.+|+ ++|+.|+...+...++-..+
T Consensus 8 p~~Ls~~E~~eL~--------~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 8 PNDLSEEERMELE--------NIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCHHHHHhHH--------HHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 4567777766554 6899998886 67889988877766655444
No 37
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=53.31 E-value=1.1e+02 Score=24.46 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 26 QLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105 (141)
Q Consensus 26 ~~~~~e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L 105 (141)
....+.=+++|..+..|+...|+. .+++..|+.....|+..|..|
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~-----------------------------------~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQ-----------------------------------QQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 444555667888888777666553 245788899999999999999
Q ss_pred HHHHHhHHhhhh
Q 032431 106 KQRQGLIQMYKA 117 (141)
Q Consensus 106 ~~~~~~~~~~~~ 117 (141)
..|+.-+++...
T Consensus 127 YEKiRylqSY~~ 138 (248)
T PF08172_consen 127 YEKIRYLQSYNN 138 (248)
T ss_pred HHHHHHHhhCcc
Confidence 999988888774
No 38
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=53.03 E-value=70 Score=21.73 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=45.1
Q ss_pred hHHHHHHhhhhhccccCCCChhHHhhhHHHHHHHHHHHHHHH--HHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 032431 2 KQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRT--RELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQT 79 (141)
Q Consensus 2 ~~iLeRY~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~e~e~L~--~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~r 79 (141)
..++..|+..-............+.....|......++..+. ...-++.|+=+=..+++ .+...+-.+
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~----------ea~~~Le~~ 71 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKE----------EARTELKER 71 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHH----------HHHHHHHHH
Confidence 456666665543221111111112233344444555555542 22335566644444444 344444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032431 80 KGERLLNEIDALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 80 K~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
+. .+...|..+..+...+..+-..+..++.++
T Consensus 72 ~e-~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 72 LE-TIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 234455556666665666655666555543
No 39
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.96 E-value=1.1e+02 Score=23.76 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 032431 35 LSKEMADRTRE 45 (141)
Q Consensus 35 Lk~e~e~L~~~ 45 (141)
++..+..++..
T Consensus 91 ~~~rlp~le~e 101 (206)
T PRK10884 91 LRTRVPDLENQ 101 (206)
T ss_pred HHHHHHHHHHH
Confidence 45666666633
No 40
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=51.05 E-value=66 Score=20.87 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 79 TKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 79 rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
.|.+-..+.|..|+.+...|.++|..|.........
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455666777788888888888888877765554433
No 41
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=49.06 E-value=49 Score=20.68 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=25.1
Q ss_pred HHHHHHhhhhhccccCCCChhHHhhhHHHHHHHHHHHHHHHHHhhcc
Q 032431 3 QVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQM 49 (141)
Q Consensus 3 ~iLeRY~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~e~e~L~~~~R~l 49 (141)
.-++||.+.--. .-....|...|++++..|+..+.++
T Consensus 23 ~~l~rY~~vL~~----------R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 23 NFLKRYNKVLLD----------RAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777665432 1234567788999999999877765
No 42
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=48.43 E-value=35 Score=28.39 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Q 032431 87 EIDALRRKEAQLTEENLRLKQRQGLIQMYKAT 118 (141)
Q Consensus 87 ~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~~~~~ 118 (141)
.++.|++|.+.|.++|..|+............
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~ 192 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDT 192 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
No 43
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.89 E-value=1.1e+02 Score=27.13 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 64 RLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 64 ~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
+||++|+.- | .=.++|..+...++.|...+..+|..|..++..
T Consensus 80 ELEKqLaaL----r-qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 80 QMQKQYEEI----R-RELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHH----H-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 445555544 2 122455667778889999999999999999853
No 44
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=47.80 E-value=79 Score=22.28 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 80 KGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 80 K~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
....+..++..|+.....+.+||..|+..-....
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr 49 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLR 49 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999999998755443
No 45
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=46.21 E-value=28 Score=23.84 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032431 60 EELMRLEKSLEGGLSRVVQTK 80 (141)
Q Consensus 60 ~EL~~LE~qLe~al~~IR~rK 80 (141)
.||+++|++-+.+|..|+.+=
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd 48 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKD 48 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 378999999999999988654
No 46
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.16 E-value=1.3e+02 Score=22.65 Aligned_cols=54 Identities=26% Similarity=0.366 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 60 EELMRLEKSLEGGLSRVVQ----------TKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 60 ~EL~~LE~qLe~al~~IR~----------rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
.+|..+|..++.+-.+..+ .+.....++++.++++......+...|+++.....
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777666666655432 23445677888888888888888888888876543
No 47
>PF15058 Speriolin_N: Speriolin N terminus
Probab=46.09 E-value=79 Score=24.67 Aligned_cols=34 Identities=32% Similarity=0.340 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 80 KGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 80 K~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
+++.++.+-++||+.++ |..||..|+.-+.+...
T Consensus 13 qierLv~ENeeLKKlVr-LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 13 QIERLVRENEELKKLVR-LIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhhc
Confidence 34445677889999988 66778888888776544
No 48
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=45.94 E-value=2e+02 Score=26.51 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 60 EELMRLEKSLEGGLSRVVQTKGERL---LNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 60 ~EL~~LE~qLe~al~~IR~rK~qll---~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
+.|..|+++-+.=+..-+.++..+= .++++.||.-...|++|++.|.-+.....+
T Consensus 4 dkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 4 DKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3578888888888888777777654 468899999999999999999877665444
No 49
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=45.27 E-value=1.4e+02 Score=23.24 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 032431 65 LEKSLEGGLSRVVQTK 80 (141)
Q Consensus 65 LE~qLe~al~~IR~rK 80 (141)
.-.+|+..+..||.=|
T Consensus 46 vNrrlQ~hl~EIR~LK 61 (195)
T PF10226_consen 46 VNRRLQQHLNEIRGLK 61 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555544
No 50
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=43.74 E-value=86 Score=20.08 Aligned_cols=44 Identities=30% Similarity=0.320 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 61 ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQ 109 (141)
Q Consensus 61 EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~ 109 (141)
||+.||..++.=+..... +..+-..|+..+..+..|+..|..+.
T Consensus 1 ~L~~Le~kle~Li~~~~~-----L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLER-----LKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888777666443 22333444444444444554444443
No 51
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=42.82 E-value=1.1e+02 Score=22.25 Aligned_cols=15 Identities=40% Similarity=0.866 Sum_probs=11.3
Q ss_pred hhhheecccceeccC
Q 032431 127 HLEIILKTGRVLTLR 141 (141)
Q Consensus 127 ~~~~~~~~~~~~~~~ 141 (141)
..++.|+||.|..+|
T Consensus 117 ~~EIvvkDG~V~eIR 131 (131)
T PF11068_consen 117 GVEIVVKDGKVIEIR 131 (131)
T ss_dssp TEEEEEETTEEEEEE
T ss_pred CcEEEEECCEEEEeC
Confidence 457888888887665
No 52
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=42.25 E-value=1.5e+02 Score=22.53 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhhcc
Q 032431 34 ILSKEMADRTRELRQM 49 (141)
Q Consensus 34 ~Lk~e~e~L~~~~R~l 49 (141)
.+..++..|+.....+
T Consensus 124 ~l~~~i~~L~~e~~~L 139 (189)
T PF10211_consen 124 ELEEEIEELEEEKEEL 139 (189)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555444443
No 53
>PRK11637 AmiB activator; Provisional
Probab=41.69 E-value=2.2e+02 Score=24.18 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 032431 26 QLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGE--RLLNEIDALRRKEAQLTEENL 103 (141)
Q Consensus 26 ~~~~~e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~q--ll~~~i~~Lk~Ke~~L~eeN~ 103 (141)
+....++..+.+++..++..++. ...+|..|+.+|...-..|.....+ .+..+|..++.+...++.+-.
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~---------~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRAS---------LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555554 3346888888888888777765544 345566666666555555544
Q ss_pred HHHHHH
Q 032431 104 RLKQRQ 109 (141)
Q Consensus 104 ~L~~~~ 109 (141)
.....+
T Consensus 121 ~~~~~l 126 (428)
T PRK11637 121 AQERLL 126 (428)
T ss_pred HHHHHH
Confidence 444443
No 54
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=40.91 E-value=70 Score=28.16 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 55 QELNMEELMRLEKSLEGGLSRVVQT------------KGERLLNE-----------IDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 55 ~~Lsl~EL~~LE~qLe~al~~IR~r------------K~qll~~~-----------i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
++.++.+..-|=+-=|.+|.+||.+ |.+-..+. -.+|++|+..|+..|..|..++..
T Consensus 232 EG~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 232 EGYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred ccCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 4566666666767777778887732 11111111 135666777777777777766655
Q ss_pred HHh
Q 032431 112 IQM 114 (141)
Q Consensus 112 ~~~ 114 (141)
.+.
T Consensus 312 lQt 314 (472)
T KOG0709|consen 312 LQT 314 (472)
T ss_pred HHH
Confidence 444
No 55
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.48 E-value=1.6e+02 Score=22.26 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 54 LQELNMEELMRLEKSLEGGLSRVVQT--KGERLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 54 L~~Lsl~EL~~LE~qLe~al~~IR~r--K~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
..++++++....=+++.........- -.+-+..++..|+.+...|..+|..|..++.
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899998877777777543333221 1234556777788888888888877776654
No 56
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=39.35 E-value=2.3e+02 Score=27.73 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 57 LNMEELMRLEKSLEGGLSRVVQTKGER--LLNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 57 Lsl~EL~~LE~qLe~al~~IR~rK~ql--l~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
...+||..|=++.+.+=..-+.|=+.. +.+++++|++-.+-|.++...|..++.....
T Consensus 233 ~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lra 292 (1195)
T KOG4643|consen 233 RYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRA 292 (1195)
T ss_pred hhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 455677777777777776666665555 5667777777777777777777777755433
No 57
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=39.08 E-value=1.2e+02 Score=20.56 Aligned_cols=46 Identities=22% Similarity=0.120 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032431 54 LQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 54 L~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
..+++++++ |++.=......+++.|..+...+..+|..|..+|.+.
T Consensus 61 ~~~l~P~~~-------------i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 61 RHSLTPEED-------------IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred CCCCChHHH-------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777754 3555555557788999999999999999999998764
No 58
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=38.93 E-value=61 Score=19.67 Aligned_cols=12 Identities=42% Similarity=0.440 Sum_probs=7.9
Q ss_pred CCCCCHHHHHHH
Q 032431 54 LQELNMEELMRL 65 (141)
Q Consensus 54 L~~Lsl~EL~~L 65 (141)
|..+|++||++-
T Consensus 5 Lk~ls~~eL~~r 16 (49)
T PF11629_consen 5 LKFLSYEELQQR 16 (49)
T ss_dssp GGGS-HHHHHHH
T ss_pred HhhCCHHHHHHH
Confidence 567888888753
No 59
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=38.76 E-value=1.1e+02 Score=24.58 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 89 DALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
.+++.+...|..||..|+.++.++..
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666665444
No 60
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=38.57 E-value=70 Score=17.59 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 61 ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRR 93 (141)
Q Consensus 61 EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~ 93 (141)
.+..|+..++.|+..-+--+--.+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 467788888888888777777777777777664
No 61
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.42 E-value=71 Score=24.19 Aligned_cols=43 Identities=30% Similarity=0.404 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 032431 62 LMRLEKSLEGGLSRVVQTKGERLLNEI---DALRRKEAQLTEENLRLKQRQ 109 (141)
Q Consensus 62 L~~LE~qLe~al~~IR~rK~qll~~~i---~~Lk~Ke~~L~eeN~~L~~~~ 109 (141)
|..+|..+..|+.+ +-+|..+| +.|+.....|.+|-.-|+..+
T Consensus 2 LeD~EsklN~AIER-----nalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIER-----NALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999988876 34555455 344445555555555555554
No 62
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=38.14 E-value=1.1e+02 Score=19.60 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 82 ERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 82 qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
..+..++..++++...+..+|..|..++....+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 355667888899999999999999998876554
No 63
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=38.00 E-value=1.1e+02 Score=19.60 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 032431 83 RLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYK 116 (141)
Q Consensus 83 ll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~~~ 116 (141)
-+...|+.|=.....|..+|..|+.++.......
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER 37 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREER 37 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777788888888888888877655533
No 64
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.72 E-value=1.6e+02 Score=21.56 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 53 ELQELNMEELMRLEKSLEGGLSRVVQTKGE--RLLNEI---------DALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~al~~IR~rK~q--ll~~~i---------~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
.++.+|..+|..|..++..--..+..-+.+ .+..++ +.|......|..++..|..++....+
T Consensus 65 ~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 65 ELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777777776554444444433332 122222 45566777888888888888877655
No 65
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=37.60 E-value=3e+02 Score=24.62 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 53 ELQELNMEELMRLEKSLEGGLSRVV---QTKGERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~al~~IR---~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
|++.||-+||+ +|++.|+..+- .-|.|+ ++.|+.+...|+-=-+.|.....+
T Consensus 198 ~i~~lsteelr---~qVD~A~~q~VnP~k~KeQL----V~QLkTQItDLErFInFlQ~e~~e 252 (621)
T KOG3759|consen 198 DIDKLSTEELR---RQVDDALKQLVNPFKEKEQL----VDQLKTQITDLERFINFLQDEVGE 252 (621)
T ss_pred CcccccHHHHH---HHHHHHHHHHhChHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 58888888765 68999998875 456665 345555555555544555555444
No 66
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=37.26 E-value=7.8 Score=22.50 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 53 ELQELNMEELMRLEKSLEGGLSRVVQTKGERLL 85 (141)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~ 85 (141)
||..+++.||..+=+.+...- .-+-+|.+++.
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~-~~~~~K~eLI~ 32 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEG-YSKMRKQELIF 32 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TT-GCCS-HHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCC-CCcCCHHHHHH
Confidence 577899999999998887742 22556777764
No 67
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.96 E-value=1.1e+02 Score=19.14 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032431 83 RLLNEIDALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 83 ll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
-+..++..++++...+..+|..|..++...
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888888888889999988888776
No 68
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=35.84 E-value=2.5e+02 Score=23.14 Aligned_cols=18 Identities=33% Similarity=0.213 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032431 60 EELMRLEKSLEGGLSRVV 77 (141)
Q Consensus 60 ~EL~~LE~qLe~al~~IR 77 (141)
++|..||+.-+.....++
T Consensus 64 ~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 64 QELEELEKEREELDQELE 81 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555544444444333
No 69
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.96 E-value=3.5e+02 Score=24.58 Aligned_cols=110 Identities=20% Similarity=0.207 Sum_probs=0.0
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHhhc--ccccCCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 23 LQLQLESSTYAILSKEMADRTRELRQ--MKGEELQELNME------ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRK 94 (141)
Q Consensus 23 ~~~~~~~~e~~~Lk~e~e~L~~~~R~--l~GedL~~Lsl~------EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~K 94 (141)
.++..-..|++.++.+++.|+..++. +.|+|++-+..+ +|..+..+++..-..|-..|.+. .+..+.+..+
T Consensus 301 ~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~-~~~f~~le~~ 379 (581)
T KOG0995|consen 301 SEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEI-EDFFKELEKK 379 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhcCCCCCCcchhhheeccc
Q 032431 95 EAQLTEENLRLKQRQGLIQMYKATHLTPSSAVHLEIILKTG 135 (141)
Q Consensus 95 e~~L~eeN~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 135 (141)
...+...-..+..-+.+.... ...+|-.++.++++++.+
T Consensus 380 ~~~~~~l~~~i~l~~~~~~~n--~~~~pe~~~~~~~d~k~~ 418 (581)
T KOG0995|consen 380 FIDLNSLIRRIKLGIAENSKN--LERNPERAATNGVDLKSY 418 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--CCcCCccCccccccchhH
No 70
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=34.19 E-value=1.6e+02 Score=20.42 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 83 RLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 83 ll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
-..+++..|+++...|..||..|.+...
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999999999999988764
No 71
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=32.72 E-value=2.7e+02 Score=22.60 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 77 VQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 77 R~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
+.+.++.|..+|..-++-+..+.++...|+..+..+..
T Consensus 184 ~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 184 RTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888888888888888877655
No 72
>PHA03155 hypothetical protein; Provisional
Probab=32.25 E-value=1.9e+02 Score=20.66 Aligned_cols=52 Identities=17% Similarity=0.082 Sum_probs=37.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHH
Q 032431 24 QLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSR 75 (141)
Q Consensus 24 ~~~~~~~e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~ 75 (141)
.++.+..++.+|+-||-.|.+.+++=.+.+=..|+..+=+-+=...-.+|..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~ 60 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTK 60 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHH
Confidence 3566779999999999999999988777665668887655554444444444
No 73
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=32.03 E-value=70 Score=16.36 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 032431 31 TYAILSKEMADRTREL 46 (141)
Q Consensus 31 e~~~Lk~e~e~L~~~~ 46 (141)
|+.+++..|..|++.+
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4566777777776543
No 74
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=31.24 E-value=93 Score=18.85 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 032431 53 ELQELNMEELMRLEKSLEGGLSRVVQT 79 (141)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~al~~IR~r 79 (141)
||-++|.+||...-..+...+-..|-.
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~ 27 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQ 27 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888887743
No 75
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=29.22 E-value=1e+02 Score=19.67 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 59 MEELMRLEKSLEGGLSRVVQTKGER 83 (141)
Q Consensus 59 l~EL~~LE~qLe~al~~IR~rK~ql 83 (141)
-.|+..+|+.|......+..||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999988764
No 76
>PHA02109 hypothetical protein
Probab=29.04 E-value=1.3e+02 Score=23.29 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhcccccCCCCCC--HHHHHHHHHHHHH
Q 032431 36 SKEMADRTRELRQMKGEELQELN--MEELMRLEKSLEG 71 (141)
Q Consensus 36 k~e~e~L~~~~R~l~GedL~~Ls--l~EL~~LE~qLe~ 71 (141)
..+|+.++ |...|++|++|+ ++++-.||..|+.
T Consensus 170 TE~ID~~~---~~~t~~~L~~~~~~L~~I~~L~~ki~~ 204 (233)
T PHA02109 170 TERIDQVE---RSHTGENLEGLTDKLKQISELTIKLEA 204 (233)
T ss_pred HHHHHHHH---hccchhhhhhhhHHHHhhHHHHHHHHH
Confidence 35666666 777899999987 6677777766654
No 77
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=28.72 E-value=1.8e+02 Score=19.23 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 032431 81 GERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMY 115 (141)
Q Consensus 81 ~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~~ 115 (141)
...+..++..+++....+.++|..|.-++....+.
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 34455678999999999999999999887665443
No 78
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=27.89 E-value=3.2e+02 Score=24.24 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=48.7
Q ss_pred HHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 40 ADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLK 106 (141)
Q Consensus 40 e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~ 106 (141)
-..+..+|.++.. .-|+.|+-.+-..+...+..+++|.+++ ..+|+.|..|...|.+.-..+-
T Consensus 406 R~Vk~~qRkl~e~---~nsl~d~aK~~~~myd~~~~l~~~q~~l-e~qI~~Le~kl~~l~~~l~s~~ 468 (489)
T KOG3684|consen 406 RSVKWEQRKLSEQ---ANSLVDLAKTQNDMYDLLQELHSRQEEL-EKQIDTLESKLEALTASLSSLP 468 (489)
T ss_pred HHHHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCc
Confidence 3455678888843 5678899999999999999999998876 5688888888777766544443
No 79
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=27.74 E-value=95 Score=25.51 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=30.8
Q ss_pred HHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 032431 41 DRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQ 78 (141)
Q Consensus 41 ~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~ 78 (141)
.++..+++..=|+|.+|+++||.+|=..|...+..|-.
T Consensus 203 ~~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfe 240 (285)
T PF06937_consen 203 SLQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDVFE 240 (285)
T ss_pred cccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666788888999999999999999888776666544
No 80
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=27.48 E-value=46 Score=23.37 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=16.3
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 032431 52 EELQELNMEELMRLEKSLE 70 (141)
Q Consensus 52 edL~~Lsl~EL~~LE~qLe 70 (141)
.-+++||.+|++.|..++|
T Consensus 85 kRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 85 KRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHhCCHHHHHHHHHHhc
Confidence 3478999999999998876
No 81
>PF14282 FlxA: FlxA-like protein
Probab=26.47 E-value=2.2e+02 Score=19.55 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 30 STYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEEN 102 (141)
Q Consensus 30 ~e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN 102 (141)
..+..|.+++..|+..+..+... .+++.++ ...|.+.|..+|..|......+..+-
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~---------------k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQD--SDLDAEQ---------------KQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--cCCCHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778999999999888887653 3445543 45667777778888777766554443
No 82
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=26.45 E-value=1.7e+02 Score=20.83 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 84 LLNEIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 84 l~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
+..+|..+++....+.+||..|+-......
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 356889999999999999999987765543
No 83
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.38 E-value=4.6e+02 Score=23.29 Aligned_cols=58 Identities=24% Similarity=0.460 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhccc--ccCCCCCCHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 032431 35 LSKEMADRTRELRQMK--GEELQELNME-ELMRLEKSLEGGLSRVVQ-------TKGERLLNEIDALR 92 (141)
Q Consensus 35 Lk~e~e~L~~~~R~l~--GedL~~Lsl~-EL~~LE~qLe~al~~IR~-------rK~qll~~~i~~Lk 92 (141)
+=.+++.|+...|.|. |=.++.++++ ++..|..++..++..|-. -+..-+.++|+.|.
T Consensus 228 ~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Ly 295 (569)
T PRK04778 228 LPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLY 295 (569)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3467788888999988 5568999865 899999999998777663 33444555555554
No 84
>PRK14127 cell division protein GpsB; Provisional
Probab=25.69 E-value=2.4e+02 Score=19.79 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 87 EIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 87 ~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
.++.+.+....|.++|..|..++.+...
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666655444
No 85
>PHA03155 hypothetical protein; Provisional
Probab=25.22 E-value=89 Score=22.31 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 032431 88 IDALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 88 i~~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
++.|..+...|.-||+.|.+++...
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~ 34 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQH 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4667777788999999999999753
No 86
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.12 E-value=2.2e+02 Score=19.02 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 80 KGERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 80 K~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
|.+-..+.|.-|+-.+..|.+.|..|...+..
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666777777777777777666544
No 87
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=24.96 E-value=51 Score=24.54 Aligned_cols=18 Identities=50% Similarity=0.602 Sum_probs=15.2
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 032431 54 LQELNMEELMRLEKSLEG 71 (141)
Q Consensus 54 L~~Lsl~EL~~LE~qLe~ 71 (141)
|..||.+||.+|+..|+.
T Consensus 21 L~~LS~EEL~~L~~el~e 38 (147)
T PF03250_consen 21 LAKLSPEELEELENELEE 38 (147)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 678999999999987743
No 88
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=24.84 E-value=2.5e+02 Score=19.74 Aligned_cols=56 Identities=11% Similarity=0.142 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032431 56 ELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 56 ~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
++|++|+..+=...+.+-... ..-..++..++..+..+...|...-..|...+...
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQW 112 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888877644322221111 11235667778888888877777777777666543
No 89
>PRK00736 hypothetical protein; Provisional
Probab=24.51 E-value=1.9e+02 Score=18.29 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 032431 95 EAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 95 e~~L~eeN~~L~~~~~~~~ 113 (141)
...|...-..|..++.+..
T Consensus 35 i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 35 VEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3334444445555555543
No 90
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.34 E-value=1.6e+02 Score=18.61 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 85 LNEIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 85 ~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
.+.+...+++...|...-..|..++....
T Consensus 24 n~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 24 NDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555666667777777777777655
No 91
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=24.32 E-value=1.6e+02 Score=23.89 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcccc--cCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032431 37 KEMADRTRELRQMKG--EELQELNMEELMRLEKSLEGGLSRVV 77 (141)
Q Consensus 37 ~e~e~L~~~~R~l~G--edL~~Lsl~EL~~LE~qLe~al~~IR 77 (141)
..-..+-..+|++.. ++.-+||++|+..+|.+....|.++|
T Consensus 215 ~~r~~fl~~HRq~fcW~DeW~gltmedIR~~E~~t~~~l~~~~ 257 (258)
T cd08888 215 QERRLFTNFHRQVFCWLDKWHGLTMDDIRRMEDETKKELDEMR 257 (258)
T ss_pred HHHHHHHHHHHHHhhhHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 344556667788766 66889999999999999999999987
No 92
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=24.29 E-value=2.8e+02 Score=20.02 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 56 ELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 56 ~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
++|++++..+=..+...-...-..-..++.+++..+.++...|..--..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~~ 111 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCIG 111 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4888888887655432211111122235566677777777777777777766664
No 93
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=24.24 E-value=1.4e+02 Score=21.97 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 84 LLNEIDALRRKEAQLTEENLRLKQR 108 (141)
Q Consensus 84 l~~~i~~Lk~Ke~~L~eeN~~L~~~ 108 (141)
+..+|+.|+.|...|.+-...|+..
T Consensus 111 ID~eIe~Lq~Ki~~LKeiR~hLk~~ 135 (145)
T PF12548_consen 111 IDHEIETLQDKIKNLKEIRGHLKKK 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3679999999999999999888775
No 94
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=23.37 E-value=4e+02 Score=21.54 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=28.0
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 50 KGEELQELNMEELMRLEKSLEGGLSRVVQTKGE------RLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 50 ~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~q------ll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
.|-|++.+.++ -.++.|.+|+-+.=-+--+ -|.+..+.++.|-..++.+|..|.+.+.+
T Consensus 96 iGHDvEhiD~e---lvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~elee 160 (290)
T COG4026 96 IGHDVEHIDVE---LVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEE 160 (290)
T ss_pred CCCCccccCHH---HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777654 3445555554332111111 23334445555555555555555544443
No 95
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=23.18 E-value=5.6e+02 Score=24.35 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhccccc-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 37 KEMADRTRELRQMKGE-------------ELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENL 103 (141)
Q Consensus 37 ~e~e~L~~~~R~l~Ge-------------dL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~ 103 (141)
+..+.+++.+|.+.+| .+...+..|+.+||.+++.-=+++|.-. +.-+.|++.-..|.|...
T Consensus 56 rRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln-----~n~~~L~~n~~eL~E~~~ 130 (829)
T KOG2189|consen 56 RRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELN-----ANKEALKANYNELLELKY 130 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHH
Confidence 5566777777776543 1223358899999999999888877633 334566666666666665
Q ss_pred HHHH
Q 032431 104 RLKQ 107 (141)
Q Consensus 104 ~L~~ 107 (141)
.|++
T Consensus 131 vl~~ 134 (829)
T KOG2189|consen 131 VLEK 134 (829)
T ss_pred HHHh
Confidence 5544
No 96
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.13 E-value=2.3e+02 Score=22.09 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 032431 61 ELMRLEKSLEGGLSRV 76 (141)
Q Consensus 61 EL~~LE~qLe~al~~I 76 (141)
||..||..|..+=..+
T Consensus 104 ELa~Le~~l~~~~~~~ 119 (195)
T PF12761_consen 104 ELAELEEKLSKVEQAA 119 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555554444443
No 97
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=22.47 E-value=3e+02 Score=19.69 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 56 ELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 56 ~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
++|++|+..+=......-...-..-..++..++..+.++...|..-...|.....
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 112 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLND 112 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788887775432111000001112345666777777777777666666665554
No 98
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=22.44 E-value=3.5e+02 Score=20.55 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032431 86 NEIDALRRKEAQLTEENLRLKQR 108 (141)
Q Consensus 86 ~~i~~Lk~Ke~~L~eeN~~L~~~ 108 (141)
+++..++.+...|..++..|..+
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~ 133 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQE 133 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555544455555554444
No 99
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=22.02 E-value=1.4e+02 Score=18.74 Aligned_cols=29 Identities=34% Similarity=0.326 Sum_probs=22.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 032431 52 EELQELNMEELMRLEKSLEGGLSRVVQTK 80 (141)
Q Consensus 52 edL~~Lsl~EL~~LE~qLe~al~~IR~rK 80 (141)
.||-.+|.+||...-..+..-|-..|..+
T Consensus 4 ~elr~ls~~eL~~~l~~lkkeL~~lR~~~ 32 (66)
T PRK00306 4 KELRELSVEELNEKLLELKKELFNLRFQK 32 (66)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888887777544
No 100
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.94 E-value=2.4e+02 Score=18.46 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 85 LNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 85 ~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
..+|+.+..+...+...-..+...+.+
T Consensus 75 ~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 75 EKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666555555555555443
No 101
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.38 E-value=2.8e+02 Score=18.97 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 56 ELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 56 ~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
++|++|+..+=...+.+-...-..-..++.+++..+.++.+.+...-..|...+.
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEA 110 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777766443332210111111244555555555555555555555554443
No 102
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=21.12 E-value=3.1e+02 Score=19.43 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 56 ELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 56 ~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
++|++|+..+=........ ...-..++..++..+.++...|..-...|...+....
T Consensus 57 GfsL~eI~~ll~~~~~~~~--~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~ 112 (131)
T cd04786 57 GFSLDEIRQLLPADASNWQ--HDELLAALERKVADIEALEARLAQNKAQLLVLIDLIE 112 (131)
T ss_pred CCCHHHHHHHHhcccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777776432211100 0111235677788888888888888777877776554
No 103
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=21.08 E-value=3.4e+02 Score=19.86 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 86 NEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 86 ~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
.+-..|.+.+..|.++|..++..+.
T Consensus 81 ~~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 81 KEKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667777776666554
No 104
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=21.01 E-value=90 Score=19.09 Aligned_cols=28 Identities=36% Similarity=0.322 Sum_probs=17.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 032431 53 ELQELNMEELMRLEKSLEGGLSRVVQTK 80 (141)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~al~~IR~rK 80 (141)
||-.+|.+||...-..+...+-..|..+
T Consensus 3 elr~ls~~eL~~~l~elk~eL~~Lr~q~ 30 (58)
T PF00831_consen 3 ELRELSDEELQEKLEELKKELFNLRFQK 30 (58)
T ss_dssp HHCHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777766666666666666544
No 105
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=20.95 E-value=1.1e+02 Score=23.51 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032431 61 ELMRLEKSLEGGLSRVVQ 78 (141)
Q Consensus 61 EL~~LE~qLe~al~~IR~ 78 (141)
||+.||.||+.-+..||.
T Consensus 160 ElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 160 ELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 677888888887777653
No 106
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=20.45 E-value=6.5e+02 Score=22.98 Aligned_cols=86 Identities=22% Similarity=0.261 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 26 QLESSTYAILSKEMADRTRELRQMKGEELQELNM------EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLT 99 (141)
Q Consensus 26 ~~~~~e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl------~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~ 99 (141)
..+..++..|+++++.|...+.-.. ++-..||. .-|..||..++..-.....+ ..|.+.+..-+.-.-...
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv-~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~--~kLLe~lqsdk~t~SRAl 159 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQV-ENNEQLSRLNQEQEERLAELEEELERLQEQQEDR--QKLLEQLQSDKATASRAL 159 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhcccchHHHHHH
Confidence 3567778888888888875543322 22222221 12444454444433333221 122333333333333345
Q ss_pred HHHHHHHHHHHhHHh
Q 032431 100 EENLRLKQRQGLIQM 114 (141)
Q Consensus 100 eeN~~L~~~~~~~~~ 114 (141)
..|..|..++.++..
T Consensus 160 sQN~eLK~QL~Elq~ 174 (617)
T PF15070_consen 160 SQNRELKEQLAELQD 174 (617)
T ss_pred HhHHHHHHHHHHHHH
Confidence 556666666555443
No 107
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=20.24 E-value=1.5e+02 Score=17.36 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 80 KGERLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 80 K~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
....+.-.|..+..+.-.|..||..|+..+.
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ---------------HHHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 3445566777888888888888888887653
No 108
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=20.21 E-value=5.5e+02 Score=21.92 Aligned_cols=89 Identities=25% Similarity=0.258 Sum_probs=46.4
Q ss_pred hHHHHHHhhhhhccccCCCChhHHhhhHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 2 KQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKG 81 (141)
Q Consensus 2 ~~iLeRY~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~ 81 (141)
..+.+||........+.+... ...++..+-++...|+...- .+.++..++.+|+.+-.-+...++
T Consensus 10 ~~~~~r~~el~~~L~~p~v~~-----d~~~~~~lske~a~l~~iv~----------~~~~~~~~~~~l~~a~~~l~~~~D 74 (363)
T COG0216 10 ESLLERYEELEALLSDPEVIS-----DPDEYRKLSKEYAELEPIVE----------KYREYKKAQEDLEDAKEMLAEEKD 74 (363)
T ss_pred HHHHHHHHHHHHHhcCccccc-----CHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccCC
Confidence 568889987765544433211 11233344444444443222 245566666666666555554333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 82 ----ERLLNEIDALRRKEAQLTEENLRL 105 (141)
Q Consensus 82 ----qll~~~i~~Lk~Ke~~L~eeN~~L 105 (141)
.+..++|..++.+...|.++-+.|
T Consensus 75 ~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 75 PEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234456777777666666554444
No 109
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=20.17 E-value=2.8e+02 Score=24.01 Aligned_cols=30 Identities=13% Similarity=0.389 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 59 MEELMRLEKSLEGGLSRVVQTKGERLLNEI 88 (141)
Q Consensus 59 l~EL~~LE~qLe~al~~IR~rK~qll~~~i 88 (141)
=.|..+||++|-.++.-|-++|.+..+.++
T Consensus 185 e~di~~lErrL~qtmdmiisKKkk~a~~~l 214 (462)
T KOG2417|consen 185 ETDIIQLERRLAQTMDMIISKKKKMAMAQL 214 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999999888776
No 110
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=20.09 E-value=3.4e+02 Score=23.66 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 26 QLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEI 88 (141)
Q Consensus 26 ~~~~~e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i 88 (141)
+..+.|+..||++...++ |-+.=.+++--..++..+|.-.++|-.--.+++.+++
T Consensus 320 eLqQnEi~nLKqElasme--------ervaYQsyERaRdIqEalEscqtrisKlEl~qq~qqv 374 (455)
T KOG3850|consen 320 ELQQNEIANLKQELASME--------ERVAYQSYERARDIQEALESCQTRISKLELQQQQQQV 374 (455)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666655 4445567777778888888877776554444444344
No 111
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=20.09 E-value=5e+02 Score=21.34 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=31.1
Q ss_pred CCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 57 LNMEELMRLEK---SLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 57 Lsl~EL~~LE~---qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
+-..|+..||+ .=-.|.++-|.|| ++.|..|+.|+..+.-.|..|...+.
T Consensus 199 ~e~qe~~kleRkrlrnreaa~Kcr~rk----LdrisrLEdkv~~lk~~n~~L~~~l~ 251 (279)
T KOG0837|consen 199 MEDQEKIKLERKRLRNREAASKCRKRK----LDRISRLEDKVKTLKIYNRDLASELS 251 (279)
T ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 33457777775 2234555666666 45677788887777777766655443
Done!