Query 032431
Match_columns 141
No_of_seqs 116 out of 1066
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 23:02:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 92.5 1.4 4.8E-05 28.6 9.0 43 57-104 3-45 (81)
2 2dgc_A Protein (GCN4); basic d 86.6 3.2 0.00011 25.4 6.5 39 71-113 19-57 (63)
3 2wt7_A Proto-oncogene protein 85.8 4.1 0.00014 24.7 6.7 39 72-114 13-51 (63)
4 1dh3_A Transcription factor CR 85.2 4.2 0.00014 24.2 6.4 38 72-113 12-49 (55)
5 1t2k_D Cyclic-AMP-dependent tr 84.0 5 0.00017 24.1 6.6 40 71-114 11-50 (61)
6 1jnm_A Proto-oncogene C-JUN; B 80.7 7.1 0.00024 23.5 6.7 42 71-116 11-52 (62)
7 1ci6_A Transcription factor AT 79.5 8.2 0.00028 23.4 6.7 40 71-114 12-51 (63)
8 2dfs_A Myosin-5A; myosin-V, in 78.4 7.4 0.00025 36.0 8.2 26 89-114 1019-1044(1080)
9 1dip_A Delta-sleep-inducing pe 76.6 4.6 0.00016 25.7 4.5 28 82-109 18-45 (78)
10 2oqq_A Transcription factor HY 73.9 9.8 0.00034 21.5 5.1 26 84-109 15-40 (42)
11 2yy0_A C-MYC-binding protein; 67.8 13 0.00044 21.9 4.8 28 83-110 23-50 (53)
12 1gd2_E Transcription factor PA 67.2 20 0.00068 22.3 6.6 45 70-114 17-64 (70)
13 1go4_E MAD1 (mitotic arrest de 60.1 20 0.00068 24.0 5.2 29 86-114 12-40 (100)
14 1a93_B MAX protein, coiled coi 58.2 20 0.00068 19.3 4.0 25 78-102 6-30 (34)
15 1j1d_C Troponin I, TNI; THIN f 58.1 45 0.0015 23.3 9.2 50 34-83 30-84 (133)
16 3s4r_A Vimentin; alpha-helix, 54.6 36 0.0012 22.1 5.7 27 87-113 17-43 (93)
17 3s9g_A Protein hexim1; cyclin 54.1 46 0.0016 22.2 7.2 26 85-110 64-89 (104)
18 2w6a_A ARF GTPase-activating p 52.5 37 0.0013 20.6 8.6 52 56-107 9-62 (63)
19 2aze_A Transcription factor DP 50.5 67 0.0023 23.1 7.6 48 58-107 3-50 (155)
20 1hjb_A Ccaat/enhancer binding 49.6 50 0.0017 21.3 6.5 26 89-114 39-64 (87)
21 1gu4_A CAAT/enhancer binding p 48.5 49 0.0017 20.9 6.5 27 88-114 38-64 (78)
22 1nkp_B MAX protein, MYC proto- 48.2 46 0.0016 20.8 5.3 27 86-112 54-80 (83)
23 1ytz_T Troponin T; muscle, THI 47.8 47 0.0016 22.3 5.5 52 53-112 38-89 (107)
24 3hnw_A Uncharacterized protein 47.3 69 0.0024 22.3 9.1 48 66-113 81-130 (138)
25 1j1e_C Troponin I, TNI; THIN f 47.0 83 0.0028 23.1 8.9 51 34-84 30-85 (180)
26 1j1d_B Troponin T, TNT; THIN f 46.7 44 0.0015 22.4 5.2 31 53-83 38-68 (106)
27 1m1j_C Fibrinogen gamma chain; 45.1 68 0.0023 26.5 7.1 46 2-53 26-71 (409)
28 3ghg_A Fibrinogen alpha chain; 44.0 1.6E+02 0.0053 25.4 10.0 46 86-133 131-176 (562)
29 1e52_A Excinuclease ABC subuni 37.7 33 0.0011 20.9 3.1 33 62-94 26-58 (63)
30 1gk7_A Vimentin; intermediate 36.6 54 0.0018 17.9 4.8 27 84-110 11-37 (39)
31 3na7_A HP0958; flagellar bioge 36.2 1.4E+02 0.0046 22.5 10.0 37 58-94 88-126 (256)
32 2jee_A YIIU; FTSZ, septum, coi 36.0 85 0.0029 20.1 6.0 32 80-111 14-45 (81)
33 1g6u_A Domain swapped dimer; d 35.9 58 0.002 18.2 4.6 19 55-73 15-33 (48)
34 3s4r_A Vimentin; alpha-helix, 33.7 96 0.0033 20.0 8.5 30 83-112 53-82 (93)
35 3m48_A General control protein 33.6 57 0.0019 17.4 3.5 24 89-112 3-26 (33)
36 2oxj_A Hybrid alpha/beta pepti 33.0 59 0.002 17.4 3.9 23 89-111 4-26 (34)
37 2v71_A Nuclear distribution pr 32.8 1.5E+02 0.005 21.9 12.6 29 22-50 9-37 (189)
38 3nmd_A CGMP dependent protein 32.4 93 0.0032 19.4 7.2 45 62-111 21-65 (72)
39 4dci_A Uncharacterized protein 31.1 1.4E+02 0.0048 21.1 7.2 81 60-141 43-148 (150)
40 3gpv_A Transcriptional regulat 30.9 1.3E+02 0.0044 20.6 8.0 58 56-114 73-130 (148)
41 2zxx_A Geminin; coiled-coil, c 30.9 90 0.0031 19.9 4.5 31 81-111 36-66 (79)
42 1a92_A Delta antigen; leucine 29.9 85 0.0029 18.2 5.0 38 66-105 3-40 (50)
43 3m9b_A Proteasome-associated A 29.1 1.2E+02 0.0042 23.4 5.8 42 61-107 55-96 (251)
44 3p57_A Myocyte-specific enhanc 29.1 15 0.0005 24.1 0.5 13 1-13 61-73 (90)
45 3thf_A Protein shroom; coiled- 28.8 1.4E+02 0.0047 22.1 5.8 40 73-116 10-49 (190)
46 2jo8_A Serine/threonine-protei 28.5 77 0.0026 18.5 3.6 13 54-66 7-19 (51)
47 1am9_A Srebp-1A, protein (ster 27.7 1.1E+02 0.0039 19.0 5.0 28 86-113 50-77 (82)
48 1uii_A Geminin; human, DNA rep 27.6 1.2E+02 0.0043 19.4 5.5 29 82-110 49-77 (83)
49 3o0z_A RHO-associated protein 27.4 1.6E+02 0.0054 21.4 5.9 38 80-117 98-135 (168)
50 1deb_A APC protein, adenomatou 27.2 99 0.0034 18.1 4.4 23 90-112 7-29 (54)
51 3w03_C DNA repair protein XRCC 26.7 1.2E+02 0.0041 22.3 5.1 29 84-112 150-178 (184)
52 1ci6_A Transcription factor AT 26.6 1.1E+02 0.0036 18.2 5.7 31 81-111 32-62 (63)
53 2wh0_Q Pkcev3, protein kinase 25.4 53 0.0018 16.8 2.1 14 61-74 14-27 (31)
54 1nkp_A C-MYC, MYC proto-oncoge 25.3 1.3E+02 0.0045 19.0 4.7 20 94-113 67-86 (88)
55 3a7p_A Autophagy protein 16; c 22.9 2.1E+02 0.0072 20.4 9.0 52 60-111 68-135 (152)
56 3q4f_C DNA repair protein XRCC 22.3 1.1E+02 0.0037 22.6 4.1 23 86-108 161-183 (186)
57 3oja_B Anopheles plasmodium-re 22.1 3.3E+02 0.011 22.3 11.4 28 87-114 552-579 (597)
58 3gp4_A Transcriptional regulat 22.0 1.9E+02 0.0066 19.6 8.7 55 56-111 59-113 (142)
59 2l5g_A GPS2 protein, G protein 21.2 1.1E+02 0.0039 16.6 3.7 21 86-106 15-35 (38)
60 2wvr_A Geminin; DNA replicatio 21.0 2.1E+02 0.0071 21.5 5.5 30 81-110 117-146 (209)
61 1wlq_A Geminin; coiled-coil; 2 21.0 1.7E+02 0.0059 18.7 5.0 28 83-110 42-69 (83)
62 3anw_B GINS23, putative unchar 20.7 2.2E+02 0.0076 20.5 5.6 49 32-81 82-132 (171)
63 3hnw_A Uncharacterized protein 20.1 2.2E+02 0.0076 19.6 10.9 69 28-110 66-134 (138)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.49 E-value=1.4 Score=28.62 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR 104 (141)
Q Consensus 57 Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~ 104 (141)
+|++=|.+||..++.|+..| .++..+|+.|+.|-..|.++|..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999986 45566777787777665555555
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=86.64 E-value=3.2 Score=25.40 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 71 ~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
.|..+.|.||.+. +..|..++..|..+|..|..++....
T Consensus 19 eAArrsR~RK~~~----~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 19 EAARRSRARKLQR----MKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888554 57888888889999999988877653
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=85.75 E-value=4.1 Score=24.73 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 72 al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
|..+-|.||.+. +..|..++..|..+|..|...+.....
T Consensus 13 AA~rcR~rKk~~----~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 13 AAAKCRNRRREL----TDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455558888665 578888888999999999888876544
No 4
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=85.25 E-value=4.2 Score=24.18 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 72 al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
|..+-|.||.. .++.|..++..|..+|..|..++....
T Consensus 12 sA~rSR~RKk~----~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 12 AARESRRKKKE----YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455777754 467888999999999999999987654
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.05 E-value=5 Score=24.06 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 71 ~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
.|..+-|.||.+. +..|..++..|..+|..|..++.....
T Consensus 11 ~AA~k~R~rKk~~----~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 11 AAASRSRQKRKVW----VQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555668888665 578888888888888888888776544
No 6
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.74 E-value=7.1 Score=23.48 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 032431 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYK 116 (141)
Q Consensus 71 ~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~~~ 116 (141)
.|..+-|.||.+. +..|..++..|..+|..|..++.......
T Consensus 11 ~AA~k~R~rKk~~----~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 11 IAASKSRKRKLER----IARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678888655 57888999999999999998887765543
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=79.54 E-value=8.2 Score=23.44 Aligned_cols=40 Identities=28% Similarity=0.291 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 71 ~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
.|..+-|.+|.+ .+..|..+...|..+|..|..++.....
T Consensus 12 ~AA~R~R~KKk~----~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 12 TAATRYRQKKRA----EQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666776644 3567777777888888888877766544
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.42 E-value=7.4 Score=36.04 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 89 DALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
+.|+.|+..|.++|..|+.++.+...
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778889999999999999887663
No 9
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=76.57 E-value=4.6 Score=25.74 Aligned_cols=28 Identities=39% Similarity=0.391 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 82 ERLLNEIDALRRKEAQLTEENLRLKQRQ 109 (141)
Q Consensus 82 qll~~~i~~Lk~Ke~~L~eeN~~L~~~~ 109 (141)
+.+.++|.+|..+...|+.||..|+.-.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4667888888888888899998887653
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=73.92 E-value=9.8 Score=21.51 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 84 LLNEIDALRRKEAQLTEENLRLKQRQ 109 (141)
Q Consensus 84 l~~~i~~Lk~Ke~~L~eeN~~L~~~~ 109 (141)
+.....+|..++..|+.||..|++.+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 44556788899999999999998876
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=67.76 E-value=13 Score=21.93 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 83 RLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 83 ll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
.|..++..|+.|...|.+++..|+.++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888888888888775
No 12
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=67.21 E-value=20 Score=22.33 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 70 EGGLSRVVQTKGERLL---NEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 70 e~al~~IR~rK~qll~---~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
-.|=...|.||.+-|. .++..|......+..+|..|+.++..+..
T Consensus 17 R~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 17 RAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888877553 35666666666677788888877766544
No 13
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=60.12 E-value=20 Score=23.99 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 86 NEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 86 ~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
+++..++++...|..||..|+..+.....
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888888888777665444
No 14
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=58.17 E-value=20 Score=19.34 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 78 QTKGERLLNEIDALRRKEAQLTEEN 102 (141)
Q Consensus 78 ~rK~qll~~~i~~Lk~Ke~~L~eeN 102 (141)
.||++-....|+.|+++...|.++-
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 4677777777887777766665543
No 15
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=58.09 E-value=45 Score=23.34 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhccccc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 34 ILSKEMADRTRELRQMKGE-----ELQELNMEELMRLEKSLEGGLSRVVQTKGER 83 (141)
Q Consensus 34 ~Lk~e~e~L~~~~R~l~Ge-----dL~~Lsl~EL~~LE~qLe~al~~IR~rK~ql 83 (141)
.|.++-+.....-+.++.| +++++|.++|+.+=+.|...+..+=+-|.-+
T Consensus 30 ~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 30 ELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4556666665555555553 7899999999999999999998877776655
No 16
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=54.64 E-value=36 Score=22.12 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 87 EIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 87 ~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
.....=.|++.|+.+|..|..++....
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344455555555655555554443
No 17
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=54.05 E-value=46 Score=22.24 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 85 LNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 85 ~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
-.+|..|..++..|..+|..|...-.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888887654
No 18
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=52.53 E-value=37 Score=20.63 Aligned_cols=52 Identities=31% Similarity=0.490 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 56 ELNMEELMRLEKSLEGGLSRVVQ--TKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (141)
Q Consensus 56 ~Lsl~EL~~LE~qLe~al~~IR~--rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~ 107 (141)
+.++.|-.++-+-|-.|=.+|-. +=+.-+.+++.-++++...|+.||..|+.
T Consensus 9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 46777877777777666655542 12223456788888899999999988863
No 19
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=50.50 E-value=67 Score=23.06 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 58 NMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (141)
Q Consensus 58 sl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~ 107 (141)
|..|...||..-..-..+|+.+|.+| +++...+.=-+.|.+-|..+..
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999998877664 2222222223456666655543
No 20
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=49.59 E-value=50 Score=21.34 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 89 DALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
..+..+...|..+|..|..+|.+...
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655444
No 21
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=48.45 E-value=49 Score=20.91 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 88 IDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 88 i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
...+..+...|..+|..|..+|.....
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667778888888888888876544
No 22
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=48.16 E-value=46 Score=20.76 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032431 86 NEIDALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 86 ~~i~~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
.++..++.....|..+|..|..++...
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555556666677777777766543
No 23
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=47.83 E-value=47 Score=22.33 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032431 53 ELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
++++||.++|+.+=++|...+..+=+-|.-+- .++..-.-+-+.|..++.+.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE--------~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA--------EQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH--------HHHHhhhhHHHHHHHHHHHh
Confidence 88999999999999999999888776665542 23222233344555555554
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.28 E-value=69 Score=22.28 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 66 EKSLEGGLSRVVQTKGERLL--NEIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 66 E~qLe~al~~IR~rK~qll~--~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
+.+++.--..+=+=|.++.. .+++.+.++...+.+++..|..++...+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444442 2345555555556666666666555543
No 25
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=47.03 E-value=83 Score=23.12 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhccccc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 34 ILSKEMADRTRELRQMKGE-----ELQELNMEELMRLEKSLEGGLSRVVQTKGERL 84 (141)
Q Consensus 34 ~Lk~e~e~L~~~~R~l~Ge-----dL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll 84 (141)
.|.++-+.....-+.++.| ++++||.++|+.+=..|...+..+=+-|.-+-
T Consensus 30 ~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 30 ELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4555555555555555553 78889999999999999999998877776653
No 26
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=46.70 E-value=44 Score=22.44 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 53 ELQELNMEELMRLEKSLEGGLSRVVQTKGER 83 (141)
Q Consensus 53 dL~~Lsl~EL~~LE~qLe~al~~IR~rK~ql 83 (141)
++++||.++|+.+=..|...+..+=+-|.-+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 7999999999999999999998877766655
No 27
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.06 E-value=68 Score=26.46 Aligned_cols=46 Identities=7% Similarity=0.062 Sum_probs=26.1
Q ss_pred hHHHHHHhhhhhccccCCCChhHHhhhHHHHHHHHHHHHHHHHHhhcccccC
Q 032431 2 KQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEE 53 (141)
Q Consensus 2 ~~iLeRY~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~e~e~L~~~~R~l~Ged 53 (141)
+.+|.+|++..... ...++....+++.+..++..|...+.-...++
T Consensus 26 ~d~L~k~e~~V~~~------l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~ 71 (409)
T 1m1j_C 26 ADFFNKYRLTTDGE------LLEIEGLLQQATNSTGSIEYLIQHIKTIYPSE 71 (409)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHhcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 56788887755421 12344445566666666666666555544443
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.99 E-value=1.6e+02 Score=25.40 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCcchhhheec
Q 032431 86 NEIDALRRKEAQLTEENLRLKQRQGLIQMYKATHLTPSSAVHLEIILK 133 (141)
Q Consensus 86 ~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 133 (141)
.+|..||.-++.+..+-+.|.-.|.. ..-.|...|+.++.+..+++
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi--qirsCKgsCsr~~~~~vd~~ 176 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI--KIRSCRGSCSRALAREVDLK 176 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHGGGTBSCCCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccccccchheeecchH
Confidence 44455555555555555555444432 23345556666666554443
No 29
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=37.67 E-value=33 Score=20.86 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 62 LMRLEKSLEGGLSRVVQTKGERLLNEIDALRRK 94 (141)
Q Consensus 62 L~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~K 94 (141)
+..|+.++..|.....--+-..+-++|..|+++
T Consensus 26 i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 26 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 667888888888888888888888888888765
No 30
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=36.57 E-value=54 Score=17.94 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 84 LLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 84 l~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
+.+..-..=.|++.|+.+|..|..++.
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556788999999999988875
No 31
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.23 E-value=1.4e+02 Score=22.46 Aligned_cols=37 Identities=27% Similarity=0.146 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 032431 58 NMEELMRLEKSLEGGLSRVVQTKGERL--LNEIDALRRK 94 (141)
Q Consensus 58 sl~EL~~LE~qLe~al~~IR~rK~qll--~~~i~~Lk~K 94 (141)
+.+|+..|.+.++.+-.++..--.+++ +++++.++..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888777776655544 4455554443
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=36.01 E-value=85 Score=20.07 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 80 KGERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 80 K~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
|.+-..+.|.-|+-....|.++|..|..+..+
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666665554
No 33
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=35.95 E-value=58 Score=18.18 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 032431 55 QELNMEELMRLEKSLEGGL 73 (141)
Q Consensus 55 ~~Lsl~EL~~LE~qLe~al 73 (141)
+++|++||-.||..|+.--
T Consensus 15 egfspeelaaleselqale 33 (48)
T 1g6u_A 15 EGFSPEELAALESELQALE 33 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 5789999999998876543
No 34
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.72 E-value=96 Score=20.00 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032431 83 RLLNEIDALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 83 ll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
+....|..|+++...+..++..|..++..+
T Consensus 53 ~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 53 LYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999888888888888776543
No 35
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=33.64 E-value=57 Score=17.36 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 032431 89 DALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
..|..|+..|..+|..|...+.-.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345566666777777776666543
No 36
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=32.97 E-value=59 Score=17.38 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 032431 89 DALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 89 ~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
..|..|+..|..+|..|...+.-
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Confidence 44556666666666666665543
No 37
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=32.81 E-value=1.5e+02 Score=21.87 Aligned_cols=29 Identities=7% Similarity=0.034 Sum_probs=17.7
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHhhccc
Q 032431 22 SLQLQLESSTYAILSKEMADRTRELRQMK 50 (141)
Q Consensus 22 ~~~~~~~~~e~~~Lk~e~e~L~~~~R~l~ 50 (141)
...+.+|+..+..++.+...++..+--|.
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFq 37 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQ 37 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777766666666666665554443
No 38
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.42 E-value=93 Score=19.45 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 62 LMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 62 L~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
+..|+..|......||.+-.. |..+.+......++...|+.++..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876533 566666666666666677766654
No 39
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=31.11 E-value=1.4e+02 Score=21.14 Aligned_cols=81 Identities=16% Similarity=0.354 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHhhhh------------c
Q 032431 60 EELMRLEKSLEGGLSRVVQTKG-----ERLLNEIDALR----RKEAQLTEENLRLKQRQGLIQMYKA------------T 118 (141)
Q Consensus 60 ~EL~~LE~qLe~al~~IR~rK~-----qll~~~i~~Lk----~Ke~~L~eeN~~L~~~~~~~~~~~~------------~ 118 (141)
.||++||-+...++..++. .. --..+++..++ .+...+.+....|..++.+.....- .
T Consensus 43 ~elqQLefq~kr~~~e~~~-q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~L~lGsEv~qg~vE~~v 121 (150)
T 4dci_A 43 QQLAQLEQEGQTVVDQVRR-QSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVRELEMDQIVEQGQLESSC 121 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCEEeeceeeEEE
Confidence 3677777777777766652 11 01112222222 2233345555566666655544221 1
Q ss_pred CCCCCCc----chhhheecccceeccC
Q 032431 119 HLTPSSA----VHLEIILKTGRVLTLR 141 (141)
Q Consensus 119 ~~~~~s~----~~~~~~~~~~~~~~~~ 141 (141)
+...-.. ...++-|+||.|..+|
T Consensus 122 ~V~vGDn~~~~m~~EIvv~DGvV~eIR 148 (150)
T 4dci_A 122 EIKVGDNLVEKMQVAIVVRDGVIQSIE 148 (150)
T ss_dssp EECTTCBHHHHSCEEEEEETTEEEEEE
T ss_pred EEecCCCHHHHcCcEEEEeCCEEEEee
Confidence 1111111 1457888888887765
No 40
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=30.92 E-value=1.3e+02 Score=20.64 Aligned_cols=58 Identities=5% Similarity=0.041 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 56 ELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 56 ~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
++|++++..+=.....+-..+. .-..++.+++..+.++...|...-..|..++.....
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTIL-HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhhhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888776554333222221 223466778888888888888888888777765433
No 41
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=30.90 E-value=90 Score=19.87 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 81 GERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 81 ~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
++.+..+|+.++.....|.++|..|..-..+
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566676667677777777777655443
No 42
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=29.85 E-value=85 Score=18.18 Aligned_cols=38 Identities=34% Similarity=0.354 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 66 EKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105 (141)
Q Consensus 66 E~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L 105 (141)
|.-|+.++.- | +|.+-+...+...+++.+.|+++|--|
T Consensus 3 ee~LeqWv~~-R-kk~eeler~lrk~kk~iKklEdeNPWL 40 (50)
T 1a92_A 3 EDILEQWVSG-R-KKLEELERDLRKLKKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHhhhccCCch
Confidence 3445566554 3 333445567777788888888887544
No 43
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.15 E-value=1.2e+02 Score=23.39 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 61 ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (141)
Q Consensus 61 EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~ 107 (141)
.+..|+.+++.. ..|++.|.+.+..++++...|.+|+..|..
T Consensus 55 ~l~eL~~ql~~L-----~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSL-----AARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHH-----TTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355666655443 334555667778888888888888777654
No 44
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=29.10 E-value=15 Score=24.14 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=10.6
Q ss_pred ChHHHHHHhhhhh
Q 032431 1 MKQVIDRHNLHSQ 13 (141)
Q Consensus 1 M~~iLeRY~~~~~ 13 (141)
|..||+||++++.
T Consensus 61 ~~~il~rY~~~~~ 73 (90)
T 3p57_A 61 MDKVLLKYTEYNE 73 (90)
T ss_dssp HHHHHHHHHHCCS
T ss_pred HHHHHHHHHhcCc
Confidence 5789999998764
No 45
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=28.84 E-value=1.4e+02 Score=22.13 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 032431 73 LSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYK 116 (141)
Q Consensus 73 l~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~~~ 116 (141)
-+.|..+|.+| |..|++|...|.++-..|...+......+
T Consensus 10 ~~~i~~Kk~EL----i~~L~~kL~~L~~eqe~l~ee~~~N~~lG 49 (190)
T 3thf_A 10 TNLIKQKMDEL----IKHLNQKIVSLKREQQTISEECSANDRLG 49 (190)
T ss_dssp CCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888888 47888888888888888888776554433
No 46
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=28.52 E-value=77 Score=18.52 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=8.9
Q ss_pred CCCCCHHHHHHHH
Q 032431 54 LQELNMEELMRLE 66 (141)
Q Consensus 54 L~~Lsl~EL~~LE 66 (141)
|..+|++||++-=
T Consensus 7 Lk~ls~eEL~~rl 19 (51)
T 2jo8_A 7 LKSWTVEDLQKRL 19 (51)
T ss_dssp GGGSCHHHHHHHH
T ss_pred HHhCCHHHHHHHH
Confidence 5567888887543
No 47
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=27.65 E-value=1.1e+02 Score=18.96 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431 86 NEIDALRRKEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 86 ~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~ 113 (141)
+-|..|+..+..|.+++..|...+.+..
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3466788888889999999998887654
No 48
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.56 E-value=1.2e+02 Score=19.39 Aligned_cols=29 Identities=31% Similarity=0.380 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 82 ERLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 82 qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
+.+.++|+.++.....+..+|..|+.-..
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666655443
No 49
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=27.43 E-value=1.6e+02 Score=21.36 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 032431 80 KGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKA 117 (141)
Q Consensus 80 K~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~~~~ 117 (141)
+..-+..+++.++.++..+..+|..|..++......++
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888888888899999999998887766543
No 50
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.21 E-value=99 Score=18.08 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 032431 90 ALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 90 ~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
.|-+++..|..||..|++.+...
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dN 29 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDN 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhh
Confidence 34455556677777787777653
No 51
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=26.66 E-value=1.2e+02 Score=22.31 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032431 84 LLNEIDALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 84 l~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
+++.+..|+.+...|..+|..|.......
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999998876543
No 52
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.58 E-value=1.1e+02 Score=18.24 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 81 GERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 81 ~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
.+-+..+...|+.+...|..|+..|..-+.+
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556677778888888888888766543
No 53
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=25.37 E-value=53 Score=16.76 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 032431 61 ELMRLEKSLEGGLS 74 (141)
Q Consensus 61 EL~~LE~qLe~al~ 74 (141)
|+..||+++..||+
T Consensus 14 eikelennirkals 27 (31)
T 2wh0_Q 14 EIKELENNIRKALS 27 (31)
T ss_pred HHHHHHHHHHHHhc
Confidence 55666666665553
No 54
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.31 E-value=1.3e+02 Score=19.02 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 032431 94 KEAQLTEENLRLKQRQGLIQ 113 (141)
Q Consensus 94 Ke~~L~eeN~~L~~~~~~~~ 113 (141)
....|..+|..|..++.+..
T Consensus 67 ~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 67 EEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33456777777777776553
No 55
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.95 E-value=2.1e+02 Score=20.38 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 032431 60 EELMRLEKSLEGGLSRVVQTKG---------ERLLNEI-------DALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 60 ~EL~~LE~qLe~al~~IR~rK~---------qll~~~i-------~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
..+..|+..+...-.+|+.++. +.+.+++ ..+..|.+.|++||..|-.....
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555542 2333433 34556788899999777665443
No 56
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=22.28 E-value=1.1e+02 Score=22.61 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032431 86 NEIDALRRKEAQLTEENLRLKQR 108 (141)
Q Consensus 86 ~~i~~Lk~Ke~~L~eeN~~L~~~ 108 (141)
+.|..|+.+...|++||..|...
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45888999999999999999765
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.12 E-value=3.3e+02 Score=22.34 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431 87 EIDALRRKEAQLTEENLRLKQRQGLIQM 114 (141)
Q Consensus 87 ~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~ 114 (141)
.++..+++...+.+++..+..++.+...
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666666655444
No 58
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.05 E-value=1.9e+02 Score=19.63 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 56 ELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 56 ~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
++|++++..+=.....+-..+.. ..+++.+++..+.++...|...-..|..++..
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~-~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~ 113 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEA-RAELLKKQRIELKNRIDVMQEALDRLDFKIDN 113 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888887765544333222222 23456666777777777777766666666544
No 59
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.24 E-value=1.1e+02 Score=16.65 Aligned_cols=21 Identities=33% Similarity=0.292 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032431 86 NEIDALRRKEAQLTEENLRLK 106 (141)
Q Consensus 86 ~~i~~Lk~Ke~~L~eeN~~L~ 106 (141)
++|..|+.|...|.+|.-.|-
T Consensus 15 eQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777765543
No 60
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.01 E-value=2.1e+02 Score=21.45 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 81 GERLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 81 ~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
++.|.++|+.++.....|.++|..|+.-+.
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777765443
No 61
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.95 E-value=1.7e+02 Score=18.70 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 83 RLLNEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 83 ll~~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
.|.+.|+.++.....|.++|..|+.-..
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677777777777765433
No 62
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=20.67 E-value=2.2e+02 Score=20.52 Aligned_cols=49 Identities=18% Similarity=0.121 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 32 YAILSKEMADRTRELRQMKGEELQE--LNMEELMRLEKSLEGGLSRVVQTKG 81 (141)
Q Consensus 32 ~~~Lk~e~e~L~~~~R~l~GedL~~--Lsl~EL~~LE~qLe~al~~IR~rK~ 81 (141)
|.+.+.-+..|+..+|+-.+.|+++ ..+++|..+.+.++. +..+|-+|-
T Consensus 82 Y~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~~-L~~~Ri~KI 132 (171)
T 3anw_B 82 YERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLRD-LKLIRFNKI 132 (171)
T ss_dssp HHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 5577888999999999999888766 344688777666654 444566664
No 63
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.14 E-value=2.2e+02 Score=19.60 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 28 ESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107 (141)
Q Consensus 28 ~~~e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~ 107 (141)
...|+-.++.+++.|+..+..+ -+|+..|=++|..+-.++.. ...+++.++++...|+.++..|..
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~e~-----~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKAES-----SAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666444433 34555555554444333332 345566777777777777777766
Q ss_pred HHH
Q 032431 108 RQG 110 (141)
Q Consensus 108 ~~~ 110 (141)
.+.
T Consensus 132 ~~~ 134 (138)
T 3hnw_A 132 ELN 134 (138)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
Done!