Query 032431
Match_columns 141
No_of_seqs 116 out of 1066
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 23:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032431.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032431hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q08a_ a.6.1.3 (A:) Transcrip 42.1 31 0.0022 20.6 5.9 52 56-111 16-71 (94)
2 d1e52a_ a.2.9.1 (A:) C-termina 34.0 25 0.0018 19.4 3.6 33 62-94 19-51 (56)
3 d1nkpb_ a.38.1.1 (B:) Max prot 29.6 48 0.0035 19.0 5.3 38 69-111 42-79 (83)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 29.1 48 0.0035 19.2 4.7 26 87-112 60-85 (88)
5 d2azea1 e.63.1.1 (A:199-346) T 26.9 80 0.0059 20.8 7.3 44 60-105 2-45 (148)
6 d3d19a2 a.29.13.1 (A:145-274) 26.7 72 0.0053 20.1 8.6 60 29-88 37-96 (130)
7 d1t27a_ d.129.3.4 (A:) Phoshat 26.0 30 0.0021 25.3 3.7 43 36-78 215-259 (269)
8 d1uklc_ a.38.1.1 (C:) SREBP-2 24.8 52 0.0038 17.9 4.2 25 86-110 33-57 (61)
9 d2zjrv1 a.2.2.1 (V:1-66) Ribos 23.1 52 0.0038 18.4 3.8 29 52-80 4-32 (66)
10 d1siga_ a.177.1.1 (A:) Sigma70 22.8 40 0.0029 24.0 4.0 56 32-89 218-273 (334)
11 d1r8ea1 a.6.1.3 (A:3-120) Tran 22.4 77 0.0056 19.0 6.5 10 56-65 61-70 (118)
No 1
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=42.13 E-value=31 Score=20.56 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 56 ELNMEELMRLEKSLEG----GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 56 ~Lsl~EL~~LE~qLe~----al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
++|++|...|=.-... +-..|+ .++.+++..+.++...|+.--..|......
T Consensus 16 GFsL~EI~~ll~l~~~~~~~~c~~v~----~l~~~kl~~i~~kI~~L~~l~~~L~~l~~~ 71 (94)
T d1q08a_ 16 GFSLESIRELLSIRIDPEHHTCQESK----GIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (94)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCCcCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777777776432221 112232 456778888888888887766666654443
No 2
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=33.97 E-value=25 Score=19.44 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 62 LMRLEKSLEGGLSRVVQTKGERLLNEIDALRRK 94 (141)
Q Consensus 62 L~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~K 94 (141)
+..||+++..|.....--|--.+-++|..|++.
T Consensus 19 i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~ 51 (56)
T d1e52a_ 19 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 51 (56)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 778889999888888877777778888877765
No 3
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.60 E-value=48 Score=19.02 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431 69 LEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGL 111 (141)
Q Consensus 69 Le~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~ 111 (141)
|..|+.-|+. +.+++..+......|..+|..|..++..
T Consensus 42 L~~A~~yI~~-----L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 79 (83)
T d1nkpb_ 42 LDKATEYIQY-----MRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555542 2333444444445566666666666654
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.08 E-value=48 Score=19.23 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032431 87 EIDALRRKEAQLTEENLRLKQRQGLI 112 (141)
Q Consensus 87 ~i~~Lk~Ke~~L~eeN~~L~~~~~~~ 112 (141)
++..+..+...|..++..|..++.+.
T Consensus 60 ~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 60 EEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445556666666666544
No 5
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.92 E-value=80 Score=20.75 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 60 EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRL 105 (141)
Q Consensus 60 ~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L 105 (141)
.|.+.||........+|+.++.+|- ++...+.=-+.|.+-|+.+
T Consensus 2 Qe~~~Le~E~~~~~erI~~K~~~Lq--eLi~Q~iafknLV~RN~~~ 45 (148)
T d2azea1 2 QECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHA 45 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHH
Confidence 4678899999999999988876652 2222222234455555543
No 6
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=26.65 E-value=72 Score=20.13 Aligned_cols=60 Identities=8% Similarity=-0.072 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 29 SSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEI 88 (141)
Q Consensus 29 ~~e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i 88 (141)
..+.....+..+.|-..-+.+.|--..+.++..+..+-++...++..+|.-|.+++...+
T Consensus 37 i~~A~~f~~~Fe~Ll~~a~~l~~~~~~~~~~~~l~~ln~~~~~~~~~~~~FK~~~~~~~l 96 (130)
T d3d19a2 37 VDTARNFSNDFDELMYQAIDLESMKPQSQTAPLLDQFLDQNRVSVASLRDFKKTARDLIE 96 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778887777788887788899999999999999999999999988875544
No 7
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.00 E-value=30 Score=25.26 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhcccc--cCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 032431 36 SKEMADRTRELRQMKG--EELQELNMEELMRLEKSLEGGLSRVVQ 78 (141)
Q Consensus 36 k~e~e~L~~~~R~l~G--edL~~Lsl~EL~~LE~qLe~al~~IR~ 78 (141)
+..-..+-..+|+... ++.-+||++|+..+|.+....|.++|.
T Consensus 215 ~~~r~~~l~~HRq~fcW~DeW~gmTmedIR~~E~e~q~~L~~~~~ 259 (269)
T d1t27a_ 215 KQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQ 259 (269)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3444566667788766 568899999999999999999998875
No 8
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.79 E-value=52 Score=17.87 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 86 NEIDALRRKEAQLTEENLRLKQRQG 110 (141)
Q Consensus 86 ~~i~~Lk~Ke~~L~eeN~~L~~~~~ 110 (141)
+-|..|++++..|.+++..|+....
T Consensus 33 ~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 33 DYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888876653
No 9
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=23.10 E-value=52 Score=18.40 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=24.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 032431 52 EELQELNMEELMRLEKSLEGGLSRVVQTK 80 (141)
Q Consensus 52 edL~~Lsl~EL~~LE~qLe~al~~IR~rK 80 (141)
.||-.+|.+||...-..+...+-..|-.+
T Consensus 4 ~elr~~s~~eL~~~l~~lk~elf~LRfq~ 32 (66)
T d2zjrv1 4 SEMRNLQATDFAKEIDARKKELMELRFQA 32 (66)
T ss_dssp TTTTTSCHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999988888888554
No 10
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Probab=22.84 E-value=40 Score=23.97 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431 32 YAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEID 89 (141)
Q Consensus 32 ~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~ 89 (141)
+...+.++...+..++.+ ++-.++++.++..+-..+..+-...+.-|.+++...+.
T Consensus 218 l~~~~~~I~~~q~kl~~i--e~~~gl~~~elk~i~~~i~~ge~~~~~ak~~~~~~~~~ 273 (334)
T d1siga_ 218 LHDVSEEVHRALQKLQQI--EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLR 273 (334)
T ss_dssp GGGTHHHHHHHHHHHHHH--HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhhHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHhhccchHHHHHHhHHH
Confidence 334445555555444443 34566999999999999999999999999888765443
No 11
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=22.41 E-value=77 Score=18.97 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=5.2
Q ss_pred CCCHHHHHHH
Q 032431 56 ELNMEELMRL 65 (141)
Q Consensus 56 ~Lsl~EL~~L 65 (141)
++|++++..+
T Consensus 61 g~sl~eIk~~ 70 (118)
T d1r8ea1 61 GTPLEEMKKA 70 (118)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3555555443
Done!