BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032435
         (141 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic
           OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2
          Length = 174

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFS 117
           + K+ Q  W+   +D+  +  L FAG+VALW S  +I+AID+LP++P  LEL+GI ++
Sbjct: 86  IVKTAQEAWEKV-DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYT 142


>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis
           thaliana GN=At4g01150 PE=1 SV=1
          Length = 164

 Score = 39.7 bits (91), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 5   TACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTVFKSV 64
           T C   P L       S F T+P L L   N  Q    +  +AS E + S  +  +   +
Sbjct: 23  TRCSAVPYLPPRSFGRSSF-TVP-LKLVSGNGLQKVELLKTRASSEETSSIDTNELITDL 80

Query: 65  QNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFS 117
           +  WD   E++  ++  G   IVA+W S  ++ AI+ +P++P  +EL+G+ ++
Sbjct: 81  KEKWDGL-ENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYT 132


>sp|Q02896|YDC1_YEAST Alkaline ceramidase YDC1 OS=Saccharomyces cerevisiae (strain ATCC
          204508 / S288c) GN=YDC1 PE=1 SV=1
          Length = 317

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 44 VAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFA 84
          +A+ S   + S   +T F S  + W N  E R  LIG+GF+
Sbjct: 36 IAEWSNTITNSIFLMTAFYSTYSAWRNKLETRYILIGMGFS 76


>sp|Q9KW13|RPOC_SHEVI DNA-directed RNA polymerase subunit beta' OS=Shewanella violacea
            GN=rpoC PE=3 SV=1
          Length = 1409

 Score = 30.0 bits (66), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 27/35 (77%), Gaps = 1/35 (2%)

Query: 35   NEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWD 69
            ++K+N  A+ AKASG++SE +T++T  ++ +N+ D
Sbjct: 1367 HQKRNA-ALAAKASGKTSEQATTITASEAERNLAD 1400


>sp|Q74119|GAG_HV2KR Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
           (isolate KR) GN=gag PE=3 SV=3
          Length = 521

 Score = 30.0 bits (66), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 11/74 (14%)

Query: 67  VWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIII 126
           VW   + + LG  GL  + + +      +IT +D  P++P   E +  LF+TV V    I
Sbjct: 35  VW---AANELGKFGLAESLLESKEGCQKIITVLD--PLVPTGSENLKSLFNTVCV----I 85

Query: 127 WHGCCEWEKKIKES 140
           W  C   E+K+K++
Sbjct: 86  W--CLHAEEKVKDT 97


>sp|Q74120|POL_HV2KR Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
           A (isolate KR) GN=gag-pol PE=3 SV=3
          Length = 1463

 Score = 30.0 bits (66), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 11/74 (14%)

Query: 67  VWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIII 126
           VW   + + LG  GL  + + +      +IT +D  P++P   E +  LF+TV V    I
Sbjct: 35  VW---AANELGKFGLAESLLESKEGCQKIITVLD--PLVPTGSENLKSLFNTVCV----I 85

Query: 127 WHGCCEWEKKIKES 140
           W  C   E+K+K++
Sbjct: 86  W--CLHAEEKVKDT 97


>sp|Q9ZFG9|ALGE7_AZOVI Poly(beta-D-mannuronate) C5 epimerase 7 OS=Azotobacter vinelandii
           GN=algE7 PE=1 SV=1
          Length = 856

 Score = 29.3 bits (64), Expect = 7.6,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 16/62 (25%)

Query: 47  ASGESSESSTSLTVFKSVQNVWDNSS---------EDRLGLIGLGFAGI-------VALW 90
           + GE ++     +V  S QN  DN S         EDR+ L GLGF+G+       + LW
Sbjct: 591 SGGEGADIFRFTSVADSYQNSGDNFSDLILDFDPGEDRIDLSGLGFSGLGDGHNGTLLLW 650

Query: 91  AS 92
            S
Sbjct: 651 TS 652


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,991,696
Number of Sequences: 539616
Number of extensions: 1716263
Number of successful extensions: 4179
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4172
Number of HSP's gapped (non-prelim): 17
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)