BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032436
         (141 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12)
          From Yeast
          Length = 487

 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 39 SDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVM---TEGDVAKNSSK 86
          SDK  LFR  +   R+  + L  +  R     IQG++    EG ++KN  K
Sbjct: 35 SDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVK 85


>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
          Structure Of Yeast Aspartyl-Trna Synthetase Complexed
          With Trna Asp
 pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
          Structure Of Yeast Aspartyl-Trna Synthetase Complexed
          With Trna Asp
 pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
          Structural And Functional Aspects Of The Aminoacylation
          Reaction
 pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
          Structural And Functional Aspects Of The Aminoacylation
          Reaction
          Length = 490

 Score = 28.5 bits (62), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 39 SDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVM---TEGDVAKNSSK 86
          SDK  LFR  +   R+  + L  +  R     IQG++    EG ++KN  K
Sbjct: 38 SDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVK 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.139    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,431,144
Number of Sequences: 62578
Number of extensions: 171361
Number of successful extensions: 350
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 2
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)