RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032436
(141 letters)
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 34.7 bits (80), Expect = 0.003
Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 11/117 (9%)
Query: 20 GSAKEGCGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGD 79
G G G P+ I D+ LPG K+ L ++I+ +
Sbjct: 48 GIQISGKGFMPI---SIIEGDQHIKVIAWLPGVNKEDIILNA---VGDTLEIRAKRSPLM 101
Query: 80 VAKNSSKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHRKA 136
+ ++ +Y + ++ E + LP V +F ++G+L ++ K +
Sbjct: 102 ITESERIIYSEIPEE----EEIYRTIKLPATVKEENASAKF-ENGVLSVILPKAESS 153
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 31.0 bits (71), Expect = 0.058
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 11/79 (13%)
Query: 35 DIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQ 94
D+ + L G K+ +K + + I+ E ++ + K L Q+
Sbjct: 28 DMYEEGGYLVVVADLAGFNKE--KIKARVSGQNELIIEA---EREITEPG---VKYLTQR 79
Query: 95 LCPPGEFTVSFSLPGPVDP 113
P LP V
Sbjct: 80 ---PKYVRKVIRLPYNVAK 95
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 30.3 bits (68), Expect = 0.14
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 15/98 (15%)
Query: 29 PPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVY 88
GL ++ + + + + + +K +++ G E
Sbjct: 61 FDTGLSEMRLEKDRFSVNLDVKHFSPEELKVK---VLGDVIEVHGKHEERQDEHGFIS-- 115
Query: 89 KMLQQQLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGIL 126
EF + +P VDP DG+L
Sbjct: 116 ----------REFHRKYRIPADVDPLTITSSLSSDGVL 143
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 29.4 bits (67), Expect = 0.16
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 35 DIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQ 94
DI ++ LPG ++ + G + I+G + +
Sbjct: 8 DIKEEVNHFVLYADLPGIDPS--QIE-VQMDKGILSIRGERKSESSTETERFSRIERRY- 63
Query: 95 LCPPGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHRKA 136
G F F+LP D ++G+LE + K A
Sbjct: 64 ----GSFHRRFALPDSADADGITAAG-RNGVLEIRIPKRPAA 100
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding
protein, transcription factor, DNA binding protein;
2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1
d.129.1.1
Length = 198
Score = 30.3 bits (68), Expect = 0.16
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 53 RKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFT--------VS 104
R ++ + +I ++G + + G + ++ K ++ K L++ S
Sbjct: 53 RLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVAS 112
Query: 105 FSLPGPVDPRLFHPQFRQ 122
+L V+
Sbjct: 113 ANLHVIVNLDKAAFLLEN 130
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 29.8 bits (66), Expect = 0.30
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 100 EFTVSFSLPGPVDPRLFHPQFRQDGIL 126
S LP VD D +L
Sbjct: 155 SVGRSIPLPPSVDRNHIQATITTDDVL 181
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome
binding, complex (ribosome binding/ DNA); HET: DNA 5IU;
2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB:
1d3u_A* 1pcz_A
Length = 182
Score = 28.8 bits (64), Expect = 0.42
Identities = 8/78 (10%), Positives = 23/78 (29%), Gaps = 8/78 (10%)
Query: 53 RKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQQLCPPGEFTV--------S 104
D + +I +G + + G + D+ + +K+ + L+ S
Sbjct: 49 HLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFS 108
Query: 105 FSLPGPVDPRLFHPQFRQ 122
+ + +
Sbjct: 109 GDIGREFNLDVVALTLPN 126
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 28.4 bits (64), Expect = 0.59
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 35 DIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNV-QIQGVMTEGDVAKNSSKVYKMLQQ 93
D + +A++F+ LPG +K+ +K + +GNV + G T+ KN
Sbjct: 47 DWKETPEAHVFKADLPGVKKE--EVKVEV-EDGNVLVVSGERTKEKEDKNDKWHRVERSS 103
Query: 94 QLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHRKA 136
G+F F L ++G+L V K
Sbjct: 104 -----GKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAEVK 140
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 26.9 bits (60), Expect = 1.1
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 100 EFTVSFSLPGPVDPRLFHPQFRQDGIL 126
FT ++LP VDP +G L
Sbjct: 51 CFTRKYTLPPGVDPTQVSSSLSPEGTL 77
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 26.7 bits (59), Expect = 1.3
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 15/95 (15%)
Query: 32 GLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKML 91
+ + + + + + ++K +V++ E + +
Sbjct: 2 AMAQVPTDPGYFSVLLDVKHFSPEEISVKV---VGDHVEVHARHEE----RPDEHGFIA- 53
Query: 92 QQQLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGIL 126
EF + LP VDP +G+L
Sbjct: 54 -------REFHRRYRLPPGVDPAAVTSALSPEGVL 81
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 26.7 bits (59), Expect = 1.4
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 15/95 (15%)
Query: 32 GLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKML 91
G+ ++ ++ + + + +K + V+I G E
Sbjct: 3 GISEVRSDRDKFVIFLDVKHFSPEDLTVKV---QEDFVEIHGKHNERQDDHGYIS----- 54
Query: 92 QQQLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGIL 126
EF + LP VD DG+L
Sbjct: 55 -------REFHRRYRLPSNVDQSALSCSLSADGML 82
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold,
nucleotidyl transferase, structural genomic protein
structure initiative; HET: APK MSE; 2.40A {Mycobacterium
tuberculosis}
Length = 310
Score = 26.4 bits (59), Expect = 3.1
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 93 QQLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHRKAGKYLS 141
+ L TV LPG D R+ G EGV+ K R+ +Y
Sbjct: 133 ETLANATSLTVPELLPG--DGAQAFACSRKHG-WEGVIAK-RRDSRYQP 177
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 25.5 bits (56), Expect = 3.5
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 100 EFTVSFSLPGPVDPRLFHPQFRQDGIL 126
EF + +P VDP DG+L
Sbjct: 50 EFHRKYRIPADVDPLTITSSMSSDGVL 76
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA,
X-RAY crystallography; 2.60A {Methanocaldococcus
jannaschii} SCOP: d.140.1.1
Length = 130
Score = 25.1 bits (56), Expect = 6.2
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 44 LFRVSLPGARKDTSNLKCIIRRNGNVQI----QGVMT 76
F V G K R+ + I QGVM+
Sbjct: 78 RFPVKKFGYEKFEKRYL--PARDFGILIVSTTQGVMS 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.418
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,169,797
Number of extensions: 118404
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 17
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)