RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032436
         (141 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 39.6 bits (92), Expect = 2e-05
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 25  GCGAPPLGLYDIGVSDKAYLFRVSLPGARKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNS 84
           G G  P     I   D+       LPG  K+  ++      +                  
Sbjct: 7   GKGFMP---ISIIEGDQHIKVIAWLPGVNKE--DIILNAVGDTLEIRAKRSPLMI----- 56

Query: 85  SKVYKMLQQQLCPPGEFTVSFSLPGPVDPRLFHPQFRQDGILEGVVMKHRKA 136
           ++  +++  ++    E   +  LP  V       +F  +G+L  ++ K   +
Sbjct: 57  TESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFE-NGVLSVILPKAESS 107


>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP),
          C-terminal domain {Archaeon Sulfolobus acidocaldarius
          [TaxId: 2285]}
          Length = 92

 Score = 28.5 bits (64), Expect = 0.100
 Identities = 7/41 (17%), Positives = 22/41 (53%)

Query: 53 RKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQ 93
          R ++  +  +I ++G + + G  +  ++ K   ++ K L++
Sbjct: 49 RLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKK 89


>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP),
          C-terminal domain {Thale cress (Arabidopsis thaliana)
          [TaxId: 3702]}
          Length = 99

 Score = 27.4 bits (61), Expect = 0.31
 Identities = 7/41 (17%), Positives = 16/41 (39%)

Query: 53 RKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQQ 93
          R        +I  +G +   G  +E      + K  +++Q+
Sbjct: 47 RIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQK 87


>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP),
          C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
          2262]}
          Length = 92

 Score = 27.0 bits (60), Expect = 0.43
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 53 RKDTSNLKCIIRRNGNVQIQGVMTEGDVAKNSSKVYKMLQ 92
            D   +  +I  +G + + G  +  D+ +  +K+ + L+
Sbjct: 49 HLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLK 88


>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
           {Escherichia coli [TaxId: 562]}
          Length = 360

 Score = 26.2 bits (56), Expect = 1.7
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 6/38 (15%)

Query: 102 TVSFSLPGPVDPRLFHPQFRQDGI--LEGVVMKHRKAG 137
            V F L      +LF  +    G+  L+G    HR  G
Sbjct: 297 NVPFQLADSALDKLFLEESFAAGLHALKG----HRVVG 330


>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
           {Bacillus alcalophilus [TaxId: 1445]}
          Length = 360

 Score = 25.8 bits (55), Expect = 2.1
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)

Query: 103 VSFSLPGPVDPRLFHPQFRQDGI--LEGVVMKHRKAG 137
           V+F+L      + F  + ++ G   L G    HR  G
Sbjct: 299 VTFNLRNEELNQQFLAKAKEQGFVGLNG----HRSVG 331


>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT
           {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}
          Length = 361

 Score = 25.4 bits (54), Expect = 3.2
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 103 VSFSLPGPVDPRLFHPQFRQDGILEGVVMK-HRKAG 137
           ++F L      + F     Q+G    V +K HR  G
Sbjct: 299 ITFRLASEELEKEFVKASEQEGF---VGLKGHRSVG 331


>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 327

 Score = 24.6 bits (53), Expect = 5.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 41  KAYLFRVSLPGARKDTSNLKCIIRRNGNVQI 71
            + L R+   G R D+SN   +   NG  QI
Sbjct: 246 VSCLSRIYPAGWRTDSSNYSPVEMWNGGCQI 276


>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 114

 Score = 23.5 bits (50), Expect = 9.2
 Identities = 5/29 (17%), Positives = 8/29 (27%)

Query: 89  KMLQQQLCPPGEFTVSFSLPGPVDPRLFH 117
           + L   +   G F +  S        L  
Sbjct: 26  RQLLAPMNKAGSFLIRESESNKGAFSLSV 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0408    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 523,684
Number of extensions: 22101
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 11
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)