BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032437
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RA91|TAF11_PONAB Transcription initiation factor TFIID subunit 11 OS=Pongo abelii
GN=TAF11 PE=2 SV=1
Length = 211
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 29/36 (80%)
Query: 102 MAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
+ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+
Sbjct: 103 IQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLI 138
>sp|Q5U1X0|TAF11_RAT Transcription initiation factor TFIID subunit 11 OS=Rattus
norvegicus GN=Taf11 PE=2 SV=1
Length = 211
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 29/36 (80%)
Query: 102 MAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
+ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+
Sbjct: 103 IQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLI 138
>sp|Q15544|TAF11_HUMAN Transcription initiation factor TFIID subunit 11 OS=Homo sapiens
GN=TAF11 PE=1 SV=1
Length = 211
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 98 DPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
D ++ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+
Sbjct: 99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLI 138
>sp|Q99JX1|TAF11_MOUSE Transcription initiation factor TFIID subunit 11 OS=Mus musculus
GN=Taf11 PE=2 SV=1
Length = 211
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 29/36 (80%)
Query: 102 MAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
+ KMQ +++ F+E+Q+NRYE +RRSA K+ ++RL+
Sbjct: 103 IQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLI 138
>sp|P49906|TAF11_DROME Transcription initiation factor TFIID subunit 11 OS=Drosophila
melanogaster GN=Taf11 PE=1 SV=1
Length = 196
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 27/33 (81%)
Query: 105 MQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
MQ +++ FTE+Q++RYE +RRSA K+ ++RL+
Sbjct: 89 MQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLM 121
>sp|Q54XM9|TAF11_DICDI Transcription initiation factor TFIID subunit 11 OS=Dictyostelium
discoideum GN=taf11 PE=3 SV=1
Length = 450
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 105 MQAILNQFTEDQMNRYESFRRSALQKSNMRRLLLEWL 141
M ++ F+EDQ R+E ++RS+ Q++N+++++ L
Sbjct: 344 MNTLIKHFSEDQQTRFEYYKRSSFQRANIKKVMQSVL 380
>sp|Q9US54|TAF11_SCHPO Transcription initiation factor TFIID subunit 11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf11 PE=3 SV=1
Length = 199
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 104 KMQAILNQFTEDQMNRYESFRRSALQKSNMRRL 136
+ + +L F E+QM RYE FRR+ L K+N+++L
Sbjct: 92 RTKYLLESFDEEQMQRYEVFRRANLNKTNVKKL 124
>sp|P26039|TLN1_MOUSE Talin-1 OS=Mus musculus GN=Tln1 PE=1 SV=2
Length = 2541
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 36 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 95
G+A AVT L + ++++ A AGPA + YD+ D + V F S
Sbjct: 768 GAAATAVTQALNELLQHVKAHA---TGAGPAGR---------YDQATDTILTVTENIFSS 815
Query: 96 SSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
D +M + IL Q T D +N ++ N R+LL
Sbjct: 816 MGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLL 857
>sp|Q9Y490|TLN1_HUMAN Talin-1 OS=Homo sapiens GN=TLN1 PE=1 SV=3
Length = 2541
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 36 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 95
G+A AVT L + ++++ A AGPA + YD+ D + V F S
Sbjct: 768 GAAATAVTQALNELLQHVKAHA---TGAGPAGR---------YDQATDTILTVTENIFSS 815
Query: 96 SSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
D +M + IL Q T D +N ++ N R+LL
Sbjct: 816 MGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLL 857
>sp|Q02725|VTC3_YEAST Vacuolar transporter chaperone 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=VTC3 PE=1 SV=1
Length = 835
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 38 ATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGK----- 92
A+V E +D DNLES V P A++ + + + + N DVE+GK
Sbjct: 232 VYASVPNENDDFVDNLESD----VRVQPEARLNIGSKSNSLSSDGNSNQDVEIGKSKSVI 287
Query: 93 FPSSSDPA 100
FP S DP
Sbjct: 288 FPQSYDPT 295
>sp|Q9VCY8|ADRL_DROME ADIPOR-like receptor CG5315 OS=Drosophila melanogaster GN=CG5315
PE=2 SV=2
Length = 444
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 10 AALEESPGDSPDELEIETQPQ-----------TGTAAGSATAAVTGELEDEFDNLESQAP 58
+A + S G P E+E+ TQ + TG A + TA + E DE + Q
Sbjct: 13 SAADVSGGSHPAEVEVTTQARATFGMDAEGHATGEAVTTTTATLRREGSDEDIFEQVQMI 72
Query: 59 MSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPSSSDPAKMAKMQAILNQ 111
+ G + ++S N + E DDE V+ + P S P ++A + +
Sbjct: 73 LRKRRGWGPEDSLSPNDLDILEYDDELVEEDDAGCPLPSTPEDTQLIEAEMTE 125
>sp|A6NLC8|YE016_HUMAN Putative TAF11-like protein ENSP00000332601 OS=Homo sapiens PE=3
SV=2
Length = 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 104 KMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
+M +L+ +E+Q++RYE RRSA K+ + L+
Sbjct: 93 RMTTLLSAMSEEQLSRYEVCRRSAFPKACIAGLM 126
>sp|P54939|TLN1_CHICK Talin-1 OS=Gallus gallus GN=TLN1 PE=1 SV=2
Length = 2541
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 36 GSATAAVTGELEDEFDNLESQAPMSVSAGPAAKMTMSKNKDEYDEEDDENVDVELGKFPS 95
G A AVT L D +++ A T + YD+ D ++V F S
Sbjct: 768 GVAATAVTQALNDLLQHIKQHA------------TGGQPIGRYDQATDTILNVTENIFSS 815
Query: 96 SSDPAKMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLL 137
D +M + IL Q T D +N ++ N R+LL
Sbjct: 816 MGDAGEMVRQARILAQATSDLVNAIKADAEGETDLENSRKLL 857
>sp|Q6PEE2|CTIF_MOUSE CBP80/20-dependent translation initiation factor OS=Mus musculus
GN=Ctif PE=1 SV=2
Length = 600
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 12 LEESPGDSPDE-LEIETQPQTGTAAGS--ATAAVTGELEDEFDNLESQAPMSVSAGPAAK 68
LE+ PGD+ LE P T T A S T + G E E + ++ P + P
Sbjct: 282 LEDGPGDTGHSGLEPPCSPDTLTPAASERPTPQLPGGPEAEIKHKDTVLPERLRERPKIT 341
Query: 69 MTMS---KNKDEYDEEDDENVDVELGKFPSSSDPAKMAKMQAILN 110
+ S + + E+D + V VE SS P+KM ++ ILN
Sbjct: 342 LLQSSKDRLRRRLKEKDRDEVAVET----SSPQPSKMDRLMEILN 382
>sp|Q04226|TAF11_YEAST Transcription initiation factor TFIID subunit 11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF11 PE=1
SV=1
Length = 346
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 104 KMQAILNQFTEDQMNRYESFRRSALQKSNMRRL 136
+ + ++ +DQ NR+E F R++L K+ +++L
Sbjct: 123 QFKLLVTNLDKDQTNRFEVFHRTSLNKTQVKKL 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.122 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,909,363
Number of Sequences: 539616
Number of extensions: 1943836
Number of successful extensions: 7132
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 6943
Number of HSP's gapped (non-prelim): 325
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)