BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032438
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 145 bits (367), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 88/122 (72%)
Query: 8 NLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67
NLE+ ++DL+ EL RR C SKPD R I +G PGSGKGTQS +K +C CHL+TGD+L
Sbjct: 5 NLENFSTIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLL 64
Query: 68 RAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQK 127
R A KT LG+K K +++G+LV D +V+ ++DE +K P C+KGFILDG+PR QA+
Sbjct: 65 REAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAED 124
Query: 128 VS 129
++
Sbjct: 125 LN 126
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 76/96 (79%), Gaps = 1/96 (1%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+P +++ + HLATGDMLR+ +A T LG++AK+ MD+G LVSD
Sbjct: 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 94 DLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKV 128
D++V +I DE P+C+ GFILDGFPRT QA+K+
Sbjct: 66 DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKL 101
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 76/96 (79%), Gaps = 1/96 (1%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+P +++ + HLATGDMLR+ +A T LG++AK+ MD+G LVSD
Sbjct: 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 94 DLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKV 128
D++V +I DE P+C+ GFILDGFPRT QA+K+
Sbjct: 66 DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKL 101
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 74/93 (79%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R +L+GPPG+GKGTQ+P + + +C+CHLATGDMLRA VA+ + LG K K MD G+LVSD
Sbjct: 18 RAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 126
++VV +I++ ++ P C+ GF+LDGFPRT QA+
Sbjct: 78 EMVVELIEKNLETPLCKNGFLLDGFPRTVRQAE 110
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 118 bits (296), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 73/93 (78%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R +L+GPPG+GKGTQ+P + +C+CHLATGDMLRA VA+ + LG K K MD G+LVSD
Sbjct: 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 126
++V+ +I++ ++ P C+ GF+LDGFPRT QA+
Sbjct: 78 EMVLELIEKNLETPPCKNGFLLDGFPRTVRQAE 110
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+P +++ + HLATGDMLR+ +A T LG++AK+ MD+G LVSD
Sbjct: 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 94 DLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKV 128
D++V +I DE P+C+ GFIL GFPRT QA+K+
Sbjct: 66 DIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKL 101
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 70/95 (73%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+L+G PG+GKGTQ+ I Y + H++TGDM RAA+ TPLG++AK+ MD+G+LV D+
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDE 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKVS 129
+ +GI+ E + K CQ GF+LDGFPRT QA+ +
Sbjct: 63 VTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALE 97
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 108 bits (271), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 69/91 (75%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQ 124
++ +GI+ E + K C++GF+LDGFPRT Q
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 108 bits (271), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 69/90 (76%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D+
Sbjct: 3 LVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQ 124
+ +GI+ E + K C++GF+LDGFPRT Q
Sbjct: 63 VTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 108 bits (271), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 69/91 (75%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQ 124
++ +GI+ E + K C++GF+LDGFPRT Q
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 108 bits (271), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 69/91 (75%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQ 124
++ +GI+ E + K C++GF+LDGFPRT Q
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 108 bits (271), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 69/91 (75%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQ 124
++ +GI+ E + K C++GF+LDGFPRT Q
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 108 bits (271), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 68/92 (73%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
++L+G PG+GKGTQ+ I ++Y + H++TGDM RAA+ T LG+KAK MD+G LV D
Sbjct: 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 125
++ +GI+ E + K CQKGF+LDGFPRT QA
Sbjct: 62 EVTIGIVHERLSKDDCQKGFLLDGFPRTVAQA 93
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 108 bits (271), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 69/91 (75%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQ 124
++ +GI+ E + K C++GF+LDGFPRT Q
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 108 bits (271), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 70/90 (77%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
++L+G PG+GKGTQ+ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D+
Sbjct: 3 IVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQ 124
+ +GI+ E + K C++GF+LDGFPRT Q
Sbjct: 63 VTIGIVRERLSKSDCERGFLLDGFPRTVAQ 92
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 69/92 (75%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
RLIL+G PG+GKGTQ+ IK+++ + ++TGD LRAAV A TPLG++AK D+G+LV D
Sbjct: 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 125
L++G++ E +K+ C G++ DGFPRT QA
Sbjct: 70 SLIIGLVKERLKEADCANGYLFDGFPRTIAQA 101
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 69/91 (75%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQ 124
++ +GI+ E + K C++GF+LDGFPRT Q
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 68/91 (74%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGT I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQ 124
++ +GI+ E + K C++GF+LDGFPRT Q
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 63/93 (67%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
LIL+G PGSGKGTQ IK EY L HL+TGDMLR A+ T +G++AK ++ G V D
Sbjct: 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGD 66
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 126
++V+G++ E C GF+LDGFPRT QA+
Sbjct: 67 EIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAE 99
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 70/92 (76%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R+IL+G PG+GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D
Sbjct: 2 RIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 125
+LV+ ++ E + + C+ GF+LDGFPRT QA
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQA 93
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 70/92 (76%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R+IL+G PG+GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D
Sbjct: 2 RIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 125
+LV+ ++ E + + C+ GF+LDGFPRT QA
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQA 93
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 66/93 (70%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
++L+G PG+GKGTQ+ I ++Y H++TGDM RAA+ T LG+KAK MD+G LV D
Sbjct: 2 NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 126
++ +GI+ E + K C GF+LDGFPRT QA+
Sbjct: 62 EVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAE 94
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 69/92 (75%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R+IL+G P +GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D
Sbjct: 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 125
+LV+ ++ E + + C+ GF+LDGFPRT QA
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQA 93
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 62/92 (67%), Gaps = 3/92 (3%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+ +GPPG+GKGTQ+ + E H++TGD+LR AV TPLG KAKE M++GELV DD
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 126
L++ +I+E K I DGFPRT QA+
Sbjct: 63 LIIALIEEVFPK---HGNVIFDGFPRTVKQAE 91
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
++++ G P SGKGTQ +IK +Y L H++ GD+LRA +AA + G +AKE M+KG+LV D
Sbjct: 7 KVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 66
Query: 94 DLVVGIIDEAMKKPSCQK-GFILDGFPRTEVQA 125
++VV ++ E +++P Q+ G++LDG+PR+ QA
Sbjct: 67 EIVVNMVKERLRQPDAQENGWLLDGYPRSYSQA 99
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 68/92 (73%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R+IL+G +GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D
Sbjct: 2 RIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQA 125
+LV+ ++ E + + C+ GF+LDGFPRT QA
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQA 93
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
+++ GP GSGKGTQ ++KD+Y L H+ +G + R + T LG KAKE +D+G+LV D
Sbjct: 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKV 128
D+ + ++ E ++ + G++LDGFPR VQAQK+
Sbjct: 62 DITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKL 95
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
+++ GP GSGKGTQ ++KD+Y L H+ +G + R + T LG KAKE +D+G+LV D
Sbjct: 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKV 128
D+ + ++ E ++ + G++LDGFPR VQAQK+
Sbjct: 62 DITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKL 95
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 62/93 (66%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+ + ++ + ++TG++ R + T LG++AK +D G+LV
Sbjct: 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 126
DL ++D+ + P GFILDG+PR+ QA+
Sbjct: 62 DLTNELVDDRLNNPDAANGFILDGYPRSVEQAK 94
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 62/93 (66%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+ + ++ + ++TG++ R + T LG++AK +D G+LV
Sbjct: 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 81
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 126
DL ++D+ + P GFILDG+PR+ QA+
Sbjct: 82 DLTNELVDDRLNNPDAANGFILDGYPRSVEQAK 114
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
+I +GPPG+GKGTQ+ + E L+TGD+LR VA TPLG + + M++G+LV DD
Sbjct: 7 VIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDD 66
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 126
L++ +I E + + I DGFPRT QA+
Sbjct: 67 LILELIREELAER-----VIFDGFPRTLAQAE 93
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
+ +VG PGSGKGTQ I +Y HL+TGD+LR+ V++ + G K E M+KG+LV +
Sbjct: 12 IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLE 71
Query: 95 LVVGIIDEAM-KKPSCQKGFILDGFPRTEVQ 124
V+ ++ +AM K + KGF++DG+PR EVQ
Sbjct: 72 TVLDMLRDAMVAKVNTSKGFLIDGYPR-EVQ 101
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 25 MKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEA 84
M+ K K + +VG PGSGKGTQ I +Y HL+TGD+LRA V++ + G E
Sbjct: 2 MEEKLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEI 61
Query: 85 MDKGELVSDDLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKV 128
M+KG+LV + V+ ++ +AM K KGF++DG+PR Q ++
Sbjct: 62 MEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEF 106
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R ++G PGSGKGT S I + L HL++GD+LR + T +G+ AK +D+G+L+ D
Sbjct: 8 RAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPD 67
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 126
D++ ++ +K Q ++LDGFPRT QA+
Sbjct: 68 DVMTRLVLHELKN-LTQYNWLLDGFPRTLPQAE 99
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R +++G PGSGKGT S I + L HL++GD+LR + T +G+ AK +D+G+L+ D
Sbjct: 9 RAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPD 68
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 126
D++ + +K Q ++LDGFPRT QA+
Sbjct: 69 DVMTRLALHELKN-LTQYSWLLDGFPRTLPQAE 100
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK 74
VDL TE L ASK R +++GPPGSGKGT I + L HL++G LR + A
Sbjct: 11 VDLGTENLYFQSMASKL-LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS 69
Query: 75 TPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 126
T +G AK+ ++K LV D ++ ++ ++ Q ++LDGFPRT QA+
Sbjct: 70 TEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH-WLLDGFPRTLGQAE 120
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 60/91 (65%), Gaps = 5/91 (5%)
Query: 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 92
K + ++G PGSGKGTQ + ++ HL++GD+LRA V + +P G + K M++GELV
Sbjct: 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVP 89
Query: 93 DDLVVGIIDEAMKK---PSCQKGFILDGFPR 120
++V+ ++ EAM K +C F++DG+PR
Sbjct: 90 LEVVLALLKEAMIKLVDKNCH--FLIDGYPR 118
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R +++GPPGSGKGT I + L HL++G LR + A T +G AK+ ++K LV D
Sbjct: 7 RAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPD 66
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ 126
++ ++ ++ Q ++LDGFPRT QA+
Sbjct: 67 HVITRLMMSELENRRGQH-WLLDGFPRTLGQAE 98
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 92
K + ++G PGSGKGTQ + ++Y HL+TG++LR +A+++ ++ M++G+LV
Sbjct: 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVP 72
Query: 93 DDLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKV 128
+V+ ++ EAM +GF++DG+PR Q ++
Sbjct: 73 SGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEF 109
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGELVSD 93
+ ++G PG+GKGTQ + +Y HL+ GD+LRA A + G K + +G++V
Sbjct: 18 IFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ 77
Query: 94 DLVVGIIDEAMKK--PSCQKGFILDGFPRTEVQA 125
++ + ++ A+ + + F++DGFPR QA
Sbjct: 78 EITLALLRNAISDNVKANKHKFLIDGFPRKMDQA 111
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 88
SKP+ +L G PGSGKGTQ I ++ HL+ GD+LR + + G + G
Sbjct: 4 SKPNVVFVL-GGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNG 62
Query: 89 ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPR 120
E+V + V ++ A+ + K F++DGFPR
Sbjct: 63 EIVPSIVTVKLLKNAI-DANQGKNFLVDGFPR 93
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP---LGIKAKEAMDKGELV 91
+ ++G PG+GKGTQ I ++Y HL+ G++LR K P G ++ + +G++V
Sbjct: 6 VFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRD--ERKNPDSQYGELIEKYIKEGKIV 63
Query: 92 SDDLVVGII----DEAMKKPSCQKGFILDGFPRTEVQAQ 126
++ + ++ D+ M + + F++DGFPR + Q
Sbjct: 64 PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQ 102
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp
Kinase Of Streptococcus Pneumoniae
Length = 236
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 39 GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA--VAAKTPLGIKAKEAM 85
GP SGK T + II ++ +L TG M RAA +A K LG++ EA+
Sbjct: 23 GPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEAL 71
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 1 MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60
MA + A E V VD + R +K K ++LVGPPG+GK + + E +
Sbjct: 13 MAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF 72
Query: 61 LATG 64
+ G
Sbjct: 73 FSMG 76
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDE 55
K +P + L+L GPPG GK T + +I E
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDE 55
K +P + L+L GPPG GK T + +I E
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDE 55
K +P + L+L GPPG GK T + +I E
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
>pdb|2EQB|B Chain B, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
pdb|2EQB|C Chain C, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 97
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 39 GPPGSGKGTQSPIIKDEYCLCHLATGDM------LRAAVAAKTPLGIKAKEAMDKGELVS 92
GP GS +K++Y D LR +A + L KA+E DK
Sbjct: 1 GPLGSNYNQ----LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEV 56
Query: 93 DDLVVGIIDEA 103
+DL + DEA
Sbjct: 57 EDLTASLFDEA 67
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 28.9 bits (63), Expect = 0.94, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
E+L+ + + +P + L LVGP G GK T +++ Y
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGT 47
S D +L+ + KP +++ LVGP GSGK T
Sbjct: 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTT 396
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
++L+ + P K LVGP GSGK T + ++++ Y
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 26 KCASKPDKRLILVGPPGSGK 45
+CAS+ + R+ILVG G+GK
Sbjct: 16 QCASRSELRIILVGKTGTGK 35
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
++L+ + P K LVGP GSGK T + ++++ Y
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
++L+ + P K LVGP GSGK T + ++++ Y
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 8 NLEDVPSVDLMTELLRR-MKCASKPDKRLILVGPPGSGK 45
NL++V + D +L++ +K A+ P ++ GPPG+GK
Sbjct: 35 NLDEVTAQDHAVTVLKKTLKSANLP--HMLFYGPPGTGK 71
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 26 KCASKPDKRLILVGPPGSGK 45
+CAS+ + R+ILVG G+GK
Sbjct: 16 QCASRSELRIILVGKTGTGK 35
>pdb|2QHA|A Chain A, From Structure To Function: Insights Into The Catalytic
Substrate Specificity And Thermostability Displayed By
Bacillus Subtilis Mannanase Bcman
pdb|2QHA|B Chain B, From Structure To Function: Insights Into The Catalytic
Substrate Specificity And Thermostability Displayed By
Bacillus Subtilis Mannanase Bcman
Length = 342
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 7 ANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
AN+ED V ++L+ K P L L P ++PI D+Y
Sbjct: 76 ANIEDSIDVSCNSDLMSYWKNGGIPQISLHLANPAFQSGHFKTPITNDQY 125
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGK 45
V+ + E R K K K +++VGPPG+GK
Sbjct: 28 VEYLREPSRFQKLGGKIPKGVLMVGPPGTGK 58
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDML 67
++L GPPG GK T + II E H+ +G +L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of
Human Tap1
Length = 260
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
+L+ + +P + LVGP GSGK T + ++++ Y
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 67
>pdb|2OCY|A Chain A, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
pdb|2OCY|B Chain B, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 154
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 67 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA 103
LR +A + L KA+E DK +DL + DEA
Sbjct: 63 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 99
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDML 67
++L GPPG GK T + II E H+ +G +L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDML 67
++L GPPG GK T + II E H+ +G +L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDML 67
++L GPPG GK T + II E H+ +G +L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDML 67
++L GPPG GK T + II E H+ +G +L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 1 MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGK 45
+A A LE VD + R ++ +K K +L+GPPG GK
Sbjct: 8 VAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGK 52
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 53 KDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 86
+D+Y +C L + AAV LG K K+A+D
Sbjct: 334 EDKYIVCMLKENKIDAAAVIGDVSLGTKLKKAID 367
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 26.6 bits (57), Expect = 4.5, Method: Composition-based stats.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 30 KPDKRLILVGPPGSGK 45
KP K ++L GPPG+GK
Sbjct: 213 KPPKGVLLYGPPGTGK 228
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 26.6 bits (57), Expect = 4.7, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 36 ILVGPPGSGKGTQSPIIKDE--YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV 91
+L GPPG GK T + ++ E Y + D V +KT L K A+D +V
Sbjct: 81 MLYGPPGIGKTTAAHLVAQELGYDILEQNASD-----VRSKTLLNAGVKNALDNMSVV 133
>pdb|2E7S|A Chain A, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|B Chain B, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|C Chain C, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|D Chain D, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|E Chain E, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|F Chain F, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|G Chain G, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|H Chain H, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|I Chain I, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|J Chain J, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|K Chain K, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|L Chain L, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|M Chain M, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|N Chain N, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|O Chain O, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|P Chain P, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|Q Chain Q, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|R Chain R, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|S Chain S, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|T Chain T, Crystal Structure Of The Yeast Sec2p Gef Domain
Length = 135
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 67 LRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA 103
LR +A + L KA+E DK +DL + DEA
Sbjct: 51 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 87
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Adp
Length = 355
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 25 MKCASKPDKRLILVGPPGSGK 45
K KP ++L GPPG+GK
Sbjct: 77 FKGNRKPTSGILLYGPPGTGK 97
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 25 MKCASKPDKRLILVGPPGSGK 45
K KP ++L GPPG+GK
Sbjct: 44 FKGNRKPTSGILLYGPPGTGK 64
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 31 PDKRLILVGPPGSGK 45
P K L+L GPPG+GK
Sbjct: 53 PAKGLLLFGPPGNGK 67
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 26 KCASKPDKRLILVGPPGSGK 45
K +P K ++L GPPG+GK
Sbjct: 45 KVGIEPPKGILLYGPPGTGK 64
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
Length = 340
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 25 MKCASKPDKRLILVGPPGSGK 45
K KP ++L GPPG+GK
Sbjct: 62 FKGNRKPTSGILLYGPPGTGK 82
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 25 MKCASKPDKRLILVGPPGSGK 45
K KP ++L GPPG+GK
Sbjct: 53 FKGNRKPTSGILLYGPPGTGK 73
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 11 DVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70
DVP++ L + +R+ + P+ R + G G Q P H+ GD ++ A
Sbjct: 196 DVPALGL--QQIRQYSLSDMPNGRTYRISVKREGGGPQPPGYVSNLLHDHVNVGDQVKLA 253
Query: 71 ---------VAAKTPL 77
V AKTP+
Sbjct: 254 APYGSFHIDVDAKTPI 269
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 30 KPDKRLILVGPPGSGK 45
KP + ++L GPPG+GK
Sbjct: 236 KPPRGILLYGPPGTGK 251
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 30 KPDKRLILVGPPGSGK 45
KP + ++L GPPG+GK
Sbjct: 236 KPPRGILLYGPPGTGK 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,137,124
Number of Sequences: 62578
Number of extensions: 162593
Number of successful extensions: 708
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 88
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)