Query 032438
Match_columns 141
No_of_seqs 129 out of 1335
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 14:05:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 8.6E-32 1.9E-36 204.6 13.3 129 3-131 2-130 (244)
2 PF00406 ADK: Adenylate kinase 99.9 2.3E-27 5.1E-32 168.0 10.1 94 37-130 1-94 (151)
3 KOG3079 Uridylate kinase/adeny 99.9 8.5E-27 1.8E-31 168.5 10.7 105 29-133 5-110 (195)
4 PLN02459 probable adenylate ki 99.9 4.6E-26 1E-30 174.3 11.8 102 31-132 28-131 (261)
5 PRK14529 adenylate kinase; Pro 99.9 5.7E-26 1.2E-30 170.8 9.2 97 34-131 2-98 (223)
6 PRK13808 adenylate kinase; Pro 99.9 2.3E-25 5E-30 175.6 10.3 99 33-131 1-99 (333)
7 PTZ00088 adenylate kinase 1; P 99.9 4.1E-25 8.8E-30 166.9 11.1 101 31-131 5-107 (229)
8 COG0563 Adk Adenylate kinase a 99.9 3.1E-25 6.6E-30 161.9 9.9 100 33-132 1-100 (178)
9 TIGR01351 adk adenylate kinase 99.9 1.9E-24 4.1E-29 160.9 10.3 100 34-133 1-101 (210)
10 PRK14526 adenylate kinase; Pro 99.9 2.4E-24 5.2E-29 161.0 10.3 98 34-131 2-99 (211)
11 PRK14532 adenylate kinase; Pro 99.9 3.4E-24 7.3E-29 156.6 10.5 98 34-131 2-99 (188)
12 PRK00279 adk adenylate kinase; 99.9 5.7E-24 1.2E-28 158.8 9.8 99 33-131 1-99 (215)
13 PRK14528 adenylate kinase; Pro 99.9 1E-23 2.3E-28 154.6 10.4 100 33-132 2-101 (186)
14 PRK14531 adenylate kinase; Pro 99.9 1.1E-23 2.3E-28 153.9 10.2 98 33-131 3-100 (183)
15 PRK02496 adk adenylate kinase; 99.9 2.2E-23 4.7E-28 151.9 11.1 99 33-131 2-100 (184)
16 TIGR01359 UMP_CMP_kin_fam UMP- 99.9 2E-23 4.3E-28 151.6 10.3 97 34-131 1-97 (183)
17 PLN02200 adenylate kinase fami 99.9 2.5E-22 5.5E-27 152.1 11.0 101 31-132 42-142 (234)
18 cd01428 ADK Adenylate kinase ( 99.9 2.7E-22 5.8E-27 146.5 10.1 99 34-132 1-99 (194)
19 PRK14527 adenylate kinase; Pro 99.9 5.1E-22 1.1E-26 145.8 11.4 102 29-131 3-104 (191)
20 PRK14530 adenylate kinase; Pro 99.8 1.6E-20 3.4E-25 140.3 10.2 94 33-130 4-102 (215)
21 KOG3078 Adenylate kinase [Nucl 99.8 2.7E-20 5.8E-25 139.9 8.6 101 30-130 13-113 (235)
22 TIGR01360 aden_kin_iso1 adenyl 99.8 1.5E-19 3.3E-24 131.2 11.9 102 31-132 2-104 (188)
23 PLN02842 nucleotide kinase 99.8 8.8E-20 1.9E-24 150.3 9.6 95 36-130 1-96 (505)
24 PRK01184 hypothetical protein; 99.4 1.5E-12 3.4E-17 94.6 9.9 94 33-132 2-101 (184)
25 PRK08356 hypothetical protein; 99.4 3.8E-13 8.2E-18 99.1 5.4 95 31-130 4-113 (195)
26 PRK08118 topology modulation p 99.4 1.4E-12 3E-17 94.2 7.1 70 33-122 2-72 (167)
27 PF13207 AAA_17: AAA domain; P 99.2 1.9E-11 4.1E-16 82.8 5.7 34 34-67 1-34 (121)
28 PRK03839 putative kinase; Prov 99.2 2.1E-11 4.5E-16 88.4 6.2 36 34-69 2-37 (180)
29 PRK06217 hypothetical protein; 99.2 1.1E-11 2.3E-16 90.4 4.6 75 33-122 2-76 (183)
30 PRK13949 shikimate kinase; Pro 99.2 1.1E-10 2.3E-15 84.5 8.3 87 34-130 3-93 (169)
31 PRK07261 topology modulation p 99.1 2.2E-10 4.7E-15 83.0 5.2 36 33-68 1-36 (171)
32 COG1102 Cmk Cytidylate kinase 99.1 1.2E-09 2.5E-14 78.3 8.5 41 33-73 1-41 (179)
33 PHA02530 pseT polynucleotide k 99.1 5E-10 1.1E-14 87.0 7.2 93 32-130 2-95 (300)
34 PRK14730 coaE dephospho-CoA ki 99.0 6.7E-10 1.5E-14 82.1 5.5 54 33-86 2-55 (195)
35 PRK12339 2-phosphoglycerate ki 99.0 5.8E-10 1.3E-14 82.6 4.9 46 31-76 2-47 (197)
36 PRK04182 cytidylate kinase; Pr 99.0 4.7E-09 1E-13 75.3 9.5 39 34-72 2-40 (180)
37 PRK04040 adenylate kinase; Pro 99.0 2.8E-09 6.1E-14 78.4 8.0 42 32-73 2-45 (188)
38 TIGR02173 cyt_kin_arch cytidyl 99.0 4.5E-09 9.7E-14 74.9 8.2 39 34-72 2-40 (171)
39 PRK13948 shikimate kinase; Pro 98.9 4.9E-09 1.1E-13 76.8 7.9 43 29-71 7-49 (182)
40 COG0703 AroK Shikimate kinase 98.9 3.7E-09 8.1E-14 76.6 6.6 69 32-106 2-71 (172)
41 KOG3347 Predicted nucleotide k 98.9 9.1E-10 2E-14 78.0 2.6 40 31-70 6-45 (176)
42 PRK13947 shikimate kinase; Pro 98.9 1E-08 2.2E-13 73.4 8.1 37 34-70 3-39 (171)
43 PRK00131 aroK shikimate kinase 98.9 2.7E-09 5.9E-14 76.1 5.1 41 30-70 2-42 (175)
44 PRK00625 shikimate kinase; Pro 98.9 3E-09 6.4E-14 77.3 4.9 38 34-71 2-39 (173)
45 cd02022 DPCK Dephospho-coenzym 98.9 3.4E-09 7.5E-14 77.0 4.7 52 34-86 1-52 (179)
46 PF13671 AAA_33: AAA domain; P 98.8 1.3E-08 2.8E-13 70.5 7.0 39 34-72 1-39 (143)
47 cd02020 CMPK Cytidine monophos 98.8 3.2E-09 7E-14 73.7 3.8 36 34-69 1-36 (147)
48 PRK00081 coaE dephospho-CoA ki 98.8 7E-09 1.5E-13 76.4 5.3 53 33-86 3-55 (194)
49 COG0237 CoaE Dephospho-CoA kin 98.8 3.2E-08 7E-13 73.5 7.7 53 32-85 2-54 (201)
50 PRK08233 hypothetical protein; 98.8 8.4E-09 1.8E-13 74.2 4.0 27 31-57 2-28 (182)
51 PRK14734 coaE dephospho-CoA ki 98.7 3.4E-08 7.4E-13 73.2 6.6 56 33-89 2-57 (200)
52 cd00464 SK Shikimate kinase (S 98.7 3.3E-08 7.1E-13 69.3 6.0 38 34-71 1-38 (154)
53 PRK13946 shikimate kinase; Pro 98.7 7E-08 1.5E-12 70.4 7.3 40 31-70 9-48 (184)
54 PLN02199 shikimate kinase 98.7 1E-07 2.2E-12 74.5 8.6 70 29-103 99-169 (303)
55 TIGR00152 dephospho-CoA kinase 98.7 3.2E-08 6.9E-13 72.3 5.4 51 34-84 1-51 (188)
56 TIGR02881 spore_V_K stage V sp 98.7 8.9E-08 1.9E-12 73.5 7.4 103 31-136 41-169 (261)
57 CHL00181 cbbX CbbX; Provisiona 98.7 1.3E-07 2.8E-12 73.8 8.2 106 31-137 58-188 (287)
58 PLN02422 dephospho-CoA kinase 98.6 1E-07 2.2E-12 72.3 7.2 51 34-85 3-53 (232)
59 PRK06547 hypothetical protein; 98.6 7.5E-08 1.6E-12 69.9 5.6 41 29-69 12-52 (172)
60 PRK08154 anaerobic benzoate ca 98.6 2.8E-07 6.1E-12 72.5 9.1 43 28-70 129-171 (309)
61 PRK06762 hypothetical protein; 98.6 6.7E-08 1.5E-12 68.9 4.9 39 32-70 2-42 (166)
62 PTZ00451 dephospho-CoA kinase; 98.6 1.3E-07 2.8E-12 72.3 6.2 53 33-85 2-54 (244)
63 PRK14733 coaE dephospho-CoA ki 98.6 1.2E-07 2.5E-12 70.7 5.4 43 31-73 5-47 (204)
64 COG1936 Predicted nucleotide k 98.6 8.5E-08 1.8E-12 69.4 4.4 37 33-70 1-37 (180)
65 COG0283 Cmk Cytidylate kinase 98.6 4.2E-07 9E-12 68.0 8.1 38 33-70 5-42 (222)
66 PRK03731 aroL shikimate kinase 98.6 8.9E-08 1.9E-12 68.6 4.5 38 33-70 3-40 (171)
67 PF01121 CoaE: Dephospho-CoA k 98.5 2.8E-07 6.2E-12 67.4 6.7 52 34-86 2-53 (180)
68 PRK14021 bifunctional shikimat 98.5 1.8E-07 4E-12 78.8 6.4 67 32-104 6-73 (542)
69 PRK13951 bifunctional shikimat 98.5 2.2E-07 4.8E-12 77.4 6.7 37 34-70 2-38 (488)
70 PRK13973 thymidylate kinase; P 98.5 7.6E-07 1.6E-11 66.5 8.9 73 32-106 3-88 (213)
71 TIGR02880 cbbX_cfxQ probable R 98.5 3.4E-07 7.3E-12 71.3 7.2 105 31-137 57-187 (284)
72 cd02021 GntK Gluconate kinase 98.5 9.4E-08 2E-12 67.0 2.9 36 34-69 1-36 (150)
73 PRK05057 aroK shikimate kinase 98.5 1.5E-07 3.4E-12 68.1 4.1 39 32-70 4-42 (172)
74 cd02019 NK Nucleoside/nucleoti 98.5 2.3E-07 4.9E-12 57.4 4.2 23 34-56 1-23 (69)
75 TIGR00017 cmk cytidylate kinas 98.5 5.8E-07 1.2E-11 67.5 7.0 38 33-70 3-40 (217)
76 PRK03333 coaE dephospho-CoA ki 98.4 5.8E-07 1.3E-11 73.1 7.0 49 34-83 3-51 (395)
77 PRK05800 cobU adenosylcobinami 98.4 2.3E-07 4.9E-12 67.2 4.1 38 33-70 2-41 (170)
78 PRK12338 hypothetical protein; 98.4 2.7E-07 5.9E-12 72.9 4.8 42 31-72 3-44 (319)
79 PRK14731 coaE dephospho-CoA ki 98.4 4.5E-07 9.7E-12 67.5 5.7 45 30-75 3-47 (208)
80 PRK06696 uridine kinase; Valid 98.4 3.5E-07 7.7E-12 68.6 5.1 54 16-69 5-64 (223)
81 PRK13975 thymidylate kinase; P 98.4 9.8E-07 2.1E-11 64.4 7.2 26 33-58 3-28 (196)
82 PRK00023 cmk cytidylate kinase 98.4 3.9E-07 8.4E-12 68.8 4.8 39 32-70 4-42 (225)
83 TIGR03574 selen_PSTK L-seryl-t 98.4 1.4E-06 3E-11 66.4 7.8 32 35-66 2-38 (249)
84 TIGR01313 therm_gnt_kin carboh 98.4 1.6E-07 3.5E-12 66.8 2.3 33 35-67 1-33 (163)
85 PF13238 AAA_18: AAA domain; P 98.4 8.9E-07 1.9E-11 59.8 5.8 22 35-56 1-22 (129)
86 cd00227 CPT Chloramphenicol (C 98.4 4.7E-07 1E-11 65.4 4.4 38 32-69 2-41 (175)
87 PRK14732 coaE dephospho-CoA ki 98.4 1.3E-06 2.7E-11 64.7 6.8 50 35-85 2-51 (196)
88 PRK13974 thymidylate kinase; P 98.4 3E-07 6.5E-12 68.6 3.5 66 31-96 2-71 (212)
89 PRK11860 bifunctional 3-phosph 98.4 2.3E-06 4.9E-11 73.7 9.3 41 30-70 440-480 (661)
90 PF00004 AAA: ATPase family as 98.3 3.6E-07 7.8E-12 61.9 3.0 33 35-67 1-35 (132)
91 PLN02165 adenylate isopentenyl 98.3 3.5E-07 7.6E-12 72.6 3.3 41 26-66 37-77 (334)
92 PRK13477 bifunctional pantoate 98.3 1.3E-06 2.9E-11 73.0 6.7 41 30-70 282-322 (512)
93 PF01202 SKI: Shikimate kinase 98.3 1.6E-06 3.5E-11 61.7 6.2 80 41-129 1-83 (158)
94 PRK05541 adenylylsulfate kinas 98.3 9E-07 2E-11 63.8 4.2 39 28-66 3-46 (176)
95 KOG3354 Gluconate kinase [Carb 98.2 2.2E-06 4.8E-11 61.3 5.2 38 32-69 12-49 (191)
96 smart00072 GuKc Guanylate kina 98.2 3.4E-07 7.4E-12 66.7 1.0 93 33-128 3-111 (184)
97 PRK09518 bifunctional cytidyla 98.2 9.8E-07 2.1E-11 76.5 3.1 37 34-70 3-39 (712)
98 PRK12724 flagellar biosynthesi 98.2 8.4E-06 1.8E-10 66.7 8.1 93 31-132 222-325 (432)
99 PRK05480 uridine/cytidine kina 98.2 1.5E-06 3.2E-11 64.4 3.5 40 29-68 3-45 (209)
100 PLN02924 thymidylate kinase 98.2 2.8E-06 6E-11 64.0 4.9 64 28-93 12-75 (220)
101 PRK04220 2-phosphoglycerate ki 98.2 3.2E-06 7E-11 66.4 5.2 43 29-71 89-131 (301)
102 PF01583 APS_kinase: Adenylyls 98.2 2.8E-06 6.2E-11 60.8 4.4 38 31-68 1-43 (156)
103 PRK12269 bifunctional cytidyla 98.1 3E-06 6.5E-11 74.7 5.2 38 33-70 35-72 (863)
104 TIGR01663 PNK-3'Pase polynucle 98.1 3.6E-06 7.9E-11 70.7 5.4 39 29-67 366-404 (526)
105 cd02024 NRK1 Nicotinamide ribo 98.1 1.5E-06 3.2E-11 64.0 2.7 36 34-69 1-37 (187)
106 PF01745 IPT: Isopentenyl tran 98.1 5.7E-06 1.2E-10 62.1 5.8 85 33-118 2-98 (233)
107 PRK07667 uridine kinase; Provi 98.1 3.7E-06 7.9E-11 61.8 4.7 47 24-70 9-60 (193)
108 PRK00889 adenylylsulfate kinas 98.1 3.6E-06 7.8E-11 60.6 4.1 37 31-67 3-44 (175)
109 PF13521 AAA_28: AAA domain; P 98.1 2.2E-06 4.7E-11 61.0 2.7 36 34-72 1-36 (163)
110 PRK05537 bifunctional sulfate 98.1 6.4E-06 1.4E-10 69.9 5.9 40 27-66 387-432 (568)
111 COG1484 DnaC DNA replication p 98.1 3.8E-05 8.2E-10 59.0 9.7 42 31-72 104-150 (254)
112 COG0572 Udk Uridine kinase [Nu 98.1 8.1E-06 1.8E-10 61.3 5.6 39 31-69 7-48 (218)
113 PRK00091 miaA tRNA delta(2)-is 98.1 3.5E-06 7.6E-11 66.4 3.8 36 31-66 3-38 (307)
114 PHA00729 NTP-binding motif con 98.1 5.1E-06 1.1E-10 62.8 4.6 27 31-57 16-42 (226)
115 COG2019 AdkA Archaeal adenylat 98.1 1.4E-05 3.1E-10 57.8 6.5 41 32-72 4-45 (189)
116 smart00382 AAA ATPases associa 98.1 3.9E-06 8.4E-11 56.2 3.5 27 32-58 2-28 (148)
117 PRK12377 putative replication 98.1 5.4E-05 1.2E-09 58.1 10.0 40 32-71 101-145 (248)
118 PF06414 Zeta_toxin: Zeta toxi 98.1 3.8E-06 8.2E-11 61.9 3.4 42 28-69 11-55 (199)
119 TIGR02655 circ_KaiC circadian 98.1 1.6E-05 3.4E-10 66.2 7.5 104 14-119 245-363 (484)
120 PF06745 KaiC: KaiC; InterPro 98.0 4.8E-06 1E-10 62.3 4.0 100 18-118 5-124 (226)
121 COG1618 Predicted nucleotide k 98.0 5.2E-06 1.1E-10 59.7 3.9 43 30-72 3-45 (179)
122 TIGR03877 thermo_KaiC_1 KaiC d 98.0 1.7E-05 3.6E-10 60.1 6.9 54 17-70 6-64 (237)
123 PRK06526 transposase; Provisio 98.0 1.3E-05 2.8E-10 61.6 6.0 41 31-71 97-142 (254)
124 KOG3220 Similar to bacterial d 98.0 1.6E-05 3.4E-10 59.1 6.1 58 34-92 3-60 (225)
125 KOG0733 Nuclear AAA ATPase (VC 98.0 7.2E-06 1.6E-10 69.5 4.9 37 28-64 219-255 (802)
126 PF05496 RuvB_N: Holliday junc 98.0 8.6E-06 1.9E-10 61.6 4.9 32 29-60 47-78 (233)
127 TIGR00235 udk uridine kinase. 98.0 5.3E-06 1.1E-10 61.5 3.7 39 29-67 3-44 (207)
128 PRK09825 idnK D-gluconate kina 98.0 5.8E-06 1.3E-10 60.1 3.3 36 32-67 3-38 (176)
129 TIGR00390 hslU ATP-dependent p 98.0 5.4E-06 1.2E-10 67.8 3.5 34 31-64 46-79 (441)
130 PF03029 ATP_bind_1: Conserved 98.0 4.8E-06 1.1E-10 63.4 2.9 21 37-57 1-21 (238)
131 PF13401 AAA_22: AAA domain; P 98.0 1.6E-05 3.5E-10 54.0 5.3 26 31-56 3-28 (131)
132 cd02028 UMPK_like Uridine mono 98.0 5.7E-06 1.2E-10 60.2 3.1 36 34-69 1-41 (179)
133 TIGR02322 phosphon_PhnN phosph 98.0 7.7E-06 1.7E-10 58.9 3.7 25 33-57 2-26 (179)
134 PRK09270 nucleoside triphospha 98.0 1.5E-05 3.3E-10 59.9 5.4 48 10-57 8-58 (229)
135 TIGR00041 DTMP_kinase thymidyl 98.0 7.1E-06 1.5E-10 59.8 3.4 26 32-57 3-28 (195)
136 PRK04328 hypothetical protein; 98.0 3.4E-05 7.4E-10 59.0 7.1 53 17-69 8-65 (249)
137 PLN02840 tRNA dimethylallyltra 97.9 7.2E-06 1.6E-10 67.1 3.5 36 31-66 20-55 (421)
138 PRK05201 hslU ATP-dependent pr 97.9 8.5E-06 1.8E-10 66.7 3.6 33 32-64 50-82 (443)
139 TIGR00150 HI0065_YjeE ATPase, 97.9 3.4E-05 7.3E-10 53.9 6.1 41 19-59 9-49 (133)
140 TIGR00455 apsK adenylylsulfate 97.9 2E-05 4.3E-10 57.2 5.1 42 26-67 12-58 (184)
141 PRK06067 flagellar accessory p 97.9 4.1E-05 8.8E-10 57.6 7.0 55 17-71 10-69 (234)
142 smart00763 AAA_PrkA PrkA AAA d 97.9 2E-05 4.2E-10 63.4 5.4 29 30-58 76-104 (361)
143 TIGR03881 KaiC_arch_4 KaiC dom 97.9 4.7E-05 1E-09 56.9 7.3 51 17-67 5-60 (229)
144 PRK12337 2-phosphoglycerate ki 97.9 1.8E-05 3.9E-10 65.5 5.3 42 30-71 253-294 (475)
145 COG0529 CysC Adenylylsulfate k 97.9 1.7E-05 3.7E-10 57.9 4.6 29 28-56 19-47 (197)
146 PF00485 PRK: Phosphoribulokin 97.9 1E-05 2.2E-10 59.4 3.4 24 34-57 1-24 (194)
147 TIGR03263 guanyl_kin guanylate 97.9 9.8E-06 2.1E-10 58.3 3.3 26 33-58 2-27 (180)
148 cd01673 dNK Deoxyribonucleosid 97.9 4.8E-05 1E-09 55.4 7.0 27 34-60 1-27 (193)
149 PLN02748 tRNA dimethylallyltra 97.9 1.1E-05 2.4E-10 66.9 3.9 38 29-66 19-56 (468)
150 cd02023 UMPK Uridine monophosp 97.9 7.8E-06 1.7E-10 60.0 2.7 35 34-68 1-38 (198)
151 PRK03846 adenylylsulfate kinas 97.9 1.5E-05 3.4E-10 58.6 4.3 42 27-68 19-65 (198)
152 PRK09183 transposase/IS protei 97.9 7.8E-05 1.7E-09 57.4 8.4 42 29-70 99-145 (259)
153 cd02027 APSK Adenosine 5'-phos 97.9 1.4E-05 3E-10 56.5 3.9 35 34-68 1-40 (149)
154 cd00009 AAA The AAA+ (ATPases 97.9 1.8E-05 3.8E-10 53.5 4.2 38 31-68 18-60 (151)
155 PRK15453 phosphoribulokinase; 97.9 1.1E-05 2.4E-10 62.9 3.6 40 29-68 2-46 (290)
156 PRK06921 hypothetical protein; 97.9 3.8E-05 8.2E-10 59.4 6.5 40 31-70 116-161 (266)
157 TIGR00174 miaA tRNA isopenteny 97.9 9.5E-06 2.1E-10 63.4 3.1 34 34-67 1-34 (287)
158 COG1222 RPT1 ATP-dependent 26S 97.9 1.9E-05 4.2E-10 63.2 4.9 48 28-75 181-230 (406)
159 TIGR02640 gas_vesic_GvpN gas v 97.9 1.8E-05 3.9E-10 60.9 4.6 46 16-61 5-50 (262)
160 PRK08533 flagellar accessory p 97.9 3E-05 6.6E-10 58.6 5.8 47 18-64 10-61 (230)
161 PRK05439 pantothenate kinase; 97.9 1.7E-05 3.8E-10 62.6 4.6 40 29-68 83-129 (311)
162 cd01672 TMPK Thymidine monopho 97.9 1.3E-05 2.8E-10 58.0 3.5 24 33-56 1-24 (200)
163 PF07728 AAA_5: AAA domain (dy 97.9 1.1E-05 2.5E-10 55.6 3.1 26 35-60 2-27 (139)
164 PRK08181 transposase; Validate 97.9 2.4E-05 5.3E-10 60.6 5.1 42 31-72 105-151 (269)
165 PRK10078 ribose 1,5-bisphospho 97.9 1.2E-05 2.5E-10 58.7 3.1 28 33-60 3-30 (186)
166 KOG0744 AAA+-type ATPase [Post 97.9 1.2E-05 2.7E-10 63.7 3.3 41 32-72 177-228 (423)
167 PRK00300 gmk guanylate kinase; 97.9 1.7E-05 3.6E-10 58.3 3.8 28 30-57 3-30 (205)
168 CHL00195 ycf46 Ycf46; Provisio 97.9 1.4E-05 3.1E-10 66.6 3.8 35 28-62 255-289 (489)
169 COG4088 Predicted nucleotide k 97.8 1.3E-05 2.9E-10 60.0 3.1 24 33-56 2-25 (261)
170 COG0645 Predicted kinase [Gene 97.8 4.8E-05 1E-09 55.0 5.9 39 33-71 2-40 (170)
171 COG3638 ABC-type phosphate/pho 97.8 3.4E-06 7.4E-11 64.0 -0.1 85 22-106 20-109 (258)
172 PRK03992 proteasome-activating 97.8 1.7E-05 3.7E-10 64.3 3.9 41 29-69 162-204 (389)
173 COG1126 GlnQ ABC-type polar am 97.8 5.9E-06 1.3E-10 62.1 1.1 35 19-53 15-49 (240)
174 PF03266 NTPase_1: NTPase; In 97.8 1.9E-05 4.2E-10 57.0 3.8 23 34-56 1-23 (168)
175 COG2884 FtsE Predicted ATPase 97.8 5.3E-06 1.1E-10 61.3 0.8 37 20-56 16-52 (223)
176 PF07931 CPT: Chloramphenicol 97.8 2.4E-05 5.2E-10 57.0 4.0 38 33-70 2-41 (174)
177 COG1428 Deoxynucleoside kinase 97.8 1.9E-05 4.1E-10 59.0 3.5 29 32-60 4-32 (216)
178 PRK14737 gmk guanylate kinase; 97.8 2.1E-05 4.5E-10 57.7 3.7 27 30-56 2-28 (186)
179 PHA02575 1 deoxynucleoside mon 97.8 3.2E-05 6.9E-10 58.4 4.6 40 33-72 1-40 (227)
180 COG2074 2-phosphoglycerate kin 97.8 3.4E-05 7.4E-10 59.2 4.7 44 29-72 86-129 (299)
181 COG4619 ABC-type uncharacteriz 97.8 3.6E-06 7.9E-11 61.3 -0.5 32 23-54 20-51 (223)
182 PTZ00301 uridine kinase; Provi 97.8 2.4E-05 5.1E-10 58.6 3.8 37 32-68 3-46 (210)
183 PRK00698 tmk thymidylate kinas 97.8 2.6E-05 5.7E-10 57.0 3.8 26 31-56 2-27 (205)
184 COG0466 Lon ATP-dependent Lon 97.8 7E-05 1.5E-09 64.5 6.7 42 28-69 346-389 (782)
185 TIGR01242 26Sp45 26S proteasom 97.8 2.9E-05 6.3E-10 62.3 4.2 39 30-68 154-194 (364)
186 PLN00020 ribulose bisphosphate 97.8 2.4E-05 5.3E-10 63.2 3.7 42 29-70 145-188 (413)
187 KOG0731 AAA+-type ATPase conta 97.8 3E-05 6.6E-10 67.3 4.5 41 29-69 341-383 (774)
188 PF03215 Rad17: Rad17 cell cyc 97.8 4.9E-05 1.1E-09 63.9 5.7 32 29-60 42-73 (519)
189 PRK06761 hypothetical protein; 97.8 2.2E-05 4.7E-10 61.3 3.2 27 32-58 3-29 (282)
190 cd00544 CobU Adenosylcobinamid 97.8 3.1E-05 6.7E-10 56.1 3.8 31 34-64 1-33 (169)
191 PTZ00454 26S protease regulato 97.8 2.9E-05 6.3E-10 63.3 4.0 34 29-62 176-209 (398)
192 PRK09302 circadian clock prote 97.8 8.9E-05 1.9E-09 62.0 7.0 84 3-88 4-93 (509)
193 PF13173 AAA_14: AAA domain 97.7 3.1E-05 6.8E-10 53.1 3.4 39 32-70 2-44 (128)
194 PRK14962 DNA polymerase III su 97.7 5.8E-05 1.3E-09 62.8 5.4 37 22-58 26-62 (472)
195 cd02025 PanK Pantothenate kina 97.7 2E-05 4.3E-10 59.3 2.4 34 34-67 1-41 (220)
196 PRK00080 ruvB Holliday junctio 97.7 6.2E-05 1.3E-09 59.6 5.4 32 29-60 48-79 (328)
197 PRK08903 DnaA regulatory inact 97.7 0.00014 3E-09 54.4 7.0 40 30-69 40-84 (227)
198 PRK08099 bifunctional DNA-bind 97.7 3.3E-05 7.2E-10 63.0 3.8 29 32-60 219-247 (399)
199 PRK14738 gmk guanylate kinase; 97.7 3.6E-05 7.7E-10 57.2 3.7 27 29-55 10-36 (206)
200 TIGR01241 FtsH_fam ATP-depende 97.7 3.3E-05 7.2E-10 64.4 3.9 35 29-63 85-119 (495)
201 PF01695 IstB_IS21: IstB-like 97.7 4.4E-05 9.5E-10 55.6 4.0 43 30-72 45-92 (178)
202 PRK09087 hypothetical protein; 97.7 5.9E-05 1.3E-09 57.0 4.7 39 32-70 44-82 (226)
203 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00014 3E-09 62.0 7.2 44 28-71 541-586 (802)
204 TIGR00554 panK_bact pantothena 97.7 3.5E-05 7.6E-10 60.4 3.5 40 29-68 59-105 (290)
205 COG0324 MiaA tRNA delta(2)-iso 97.7 4.4E-05 9.5E-10 60.2 4.0 38 31-68 2-39 (308)
206 cd02030 NDUO42 NADH:Ubiquinone 97.7 8.4E-05 1.8E-09 55.6 5.4 28 34-61 1-28 (219)
207 PRK11545 gntK gluconate kinase 97.7 2.2E-05 4.7E-10 56.3 2.1 29 38-66 1-29 (163)
208 TIGR00635 ruvB Holliday juncti 97.7 8.4E-05 1.8E-09 57.8 5.6 31 29-59 27-57 (305)
209 PRK05342 clpX ATP-dependent pr 97.7 3.8E-05 8.2E-10 62.9 3.8 31 32-62 108-138 (412)
210 PRK07429 phosphoribulokinase; 97.7 3.9E-05 8.3E-10 61.1 3.7 39 29-67 5-46 (327)
211 TIGR01650 PD_CobS cobaltochela 97.7 4.2E-05 9.2E-10 60.7 3.9 30 32-61 64-93 (327)
212 PTZ00361 26 proteosome regulat 97.7 5E-05 1.1E-09 62.6 4.1 33 29-61 214-246 (438)
213 PLN02348 phosphoribulokinase 97.7 6.1E-05 1.3E-09 61.2 4.5 30 28-57 45-74 (395)
214 PF13191 AAA_16: AAA ATPase do 97.7 6.6E-05 1.4E-09 53.6 4.2 40 17-56 8-48 (185)
215 TIGR02655 circ_KaiC circadian 97.6 0.00013 2.9E-09 60.7 6.5 72 17-88 6-83 (484)
216 TIGR03420 DnaA_homol_Hda DnaA 97.6 0.00012 2.6E-09 54.4 5.6 40 29-68 35-79 (226)
217 KOG1533 Predicted GTPase [Gene 97.6 0.00011 2.3E-09 56.0 5.2 24 33-56 3-26 (290)
218 PHA02624 large T antigen; Prov 97.6 0.00012 2.7E-09 62.3 6.1 51 14-64 413-463 (647)
219 PF03308 ArgK: ArgK protein; 97.6 0.00012 2.5E-09 56.5 5.4 40 17-56 14-53 (266)
220 COG3839 MalK ABC-type sugar tr 97.6 2E-05 4.4E-10 62.8 1.3 43 21-66 18-60 (338)
221 PRK07952 DNA replication prote 97.6 0.00087 1.9E-08 51.3 10.2 38 33-70 100-142 (244)
222 PRK04195 replication factor C 97.6 6E-05 1.3E-09 62.7 3.9 34 30-63 37-70 (482)
223 PF00448 SRP54: SRP54-type pro 97.6 6.2E-05 1.4E-09 55.7 3.6 25 32-56 1-25 (196)
224 PHA02544 44 clamp loader, smal 97.6 0.0001 2.3E-09 57.6 5.0 30 29-58 40-69 (316)
225 PF05729 NACHT: NACHT domain 97.6 6.2E-05 1.3E-09 52.6 3.4 23 34-56 2-24 (166)
226 PF07724 AAA_2: AAA domain (Cd 97.6 6.6E-05 1.4E-09 54.4 3.5 39 30-68 1-45 (171)
227 PF13245 AAA_19: Part of AAA d 97.6 8.3E-05 1.8E-09 46.9 3.5 25 31-55 9-34 (76)
228 cd00071 GMPK Guanosine monopho 97.6 5.6E-05 1.2E-09 52.7 3.0 23 35-57 2-24 (137)
229 PRK06645 DNA polymerase III su 97.6 0.00011 2.3E-09 61.7 5.1 34 27-60 38-71 (507)
230 PRK12402 replication factor C 97.6 0.00013 2.9E-09 57.2 5.5 35 33-67 37-78 (337)
231 PRK14729 miaA tRNA delta(2)-is 97.6 7.5E-05 1.6E-09 58.7 4.0 37 31-68 3-39 (300)
232 PRK06835 DNA replication prote 97.6 0.00053 1.2E-08 54.6 8.8 40 32-71 183-227 (329)
233 COG1116 TauB ABC-type nitrate/ 97.6 3.2E-05 6.9E-10 59.1 1.7 43 20-65 17-59 (248)
234 TIGR00382 clpX endopeptidase C 97.6 6.7E-05 1.5E-09 61.4 3.7 29 33-61 117-145 (413)
235 PRK09435 membrane ATPase/prote 97.6 0.00016 3.5E-09 57.7 5.7 39 18-56 42-80 (332)
236 PLN02796 D-glycerate 3-kinase 97.6 8.5E-05 1.8E-09 59.4 4.1 38 30-67 98-140 (347)
237 KOG0730 AAA+-type ATPase [Post 97.6 0.0001 2.2E-09 62.9 4.7 45 26-70 462-508 (693)
238 TIGR03015 pepcterm_ATPase puta 97.6 0.0001 2.2E-09 56.1 4.5 38 20-57 30-68 (269)
239 PRK14961 DNA polymerase III su 97.6 0.00017 3.7E-09 58.0 5.9 31 28-58 34-64 (363)
240 PRK00771 signal recognition pa 97.6 0.00014 3E-09 60.0 5.4 27 30-56 93-119 (437)
241 COG2256 MGS1 ATPase related to 97.6 0.00011 2.4E-09 59.6 4.7 33 30-62 46-78 (436)
242 KOG0729 26S proteasome regulat 97.6 0.00034 7.4E-09 54.6 7.1 48 27-74 206-255 (435)
243 COG3842 PotA ABC-type spermidi 97.6 3E-05 6.4E-10 62.2 1.4 31 23-53 22-52 (352)
244 TIGR03575 selen_PSTK_euk L-ser 97.5 4.8E-05 1E-09 60.8 2.4 34 35-68 2-41 (340)
245 cd01124 KaiC KaiC is a circadi 97.5 6.3E-05 1.4E-09 54.1 2.9 37 34-70 1-42 (187)
246 TIGR01526 nadR_NMN_Atrans nico 97.5 8.5E-05 1.8E-09 59.0 3.8 29 32-60 162-190 (325)
247 cd01394 radB RadB. The archaea 97.5 0.00016 3.5E-09 53.7 5.0 47 18-64 5-56 (218)
248 PRK14956 DNA polymerase III su 97.5 0.00014 3E-09 60.6 5.0 32 28-59 36-67 (484)
249 PRK09302 circadian clock prote 97.5 0.00026 5.6E-09 59.3 6.7 102 16-118 257-372 (509)
250 COG1136 SalX ABC-type antimicr 97.5 4.8E-05 1E-09 57.6 2.1 34 20-53 19-52 (226)
251 PF08433 KTI12: Chromatin asso 97.5 9.5E-05 2.1E-09 57.4 3.7 35 33-67 2-41 (270)
252 PRK14963 DNA polymerase III su 97.5 0.00013 2.9E-09 61.1 4.8 37 22-58 26-62 (504)
253 PRK08116 hypothetical protein; 97.5 0.00044 9.5E-09 53.5 7.3 41 31-71 113-158 (268)
254 COG0467 RAD55 RecA-superfamily 97.5 8.9E-05 1.9E-09 56.7 3.4 51 21-71 12-67 (260)
255 PF08477 Miro: Miro-like prote 97.5 0.0001 2.2E-09 49.1 3.2 23 34-56 1-23 (119)
256 PRK10416 signal recognition pa 97.5 0.00013 2.9E-09 57.8 4.4 27 30-56 112-138 (318)
257 PRK09361 radB DNA repair and r 97.5 0.00018 4E-09 53.6 5.0 52 13-64 4-60 (225)
258 TIGR01243 CDC48 AAA family ATP 97.5 9.2E-05 2E-09 64.6 3.8 40 29-68 484-525 (733)
259 TIGR03689 pup_AAA proteasome A 97.5 9E-05 2E-09 62.2 3.6 30 29-58 213-242 (512)
260 PHA02244 ATPase-like protein 97.5 0.00013 2.8E-09 59.0 4.3 37 32-68 119-155 (383)
261 CHL00176 ftsH cell division pr 97.5 0.00011 2.3E-09 63.3 4.0 35 29-63 213-247 (638)
262 PF00910 RNA_helicase: RNA hel 97.5 8.5E-05 1.8E-09 49.6 2.7 22 35-56 1-22 (107)
263 COG0464 SpoVK ATPases of the A 97.5 9.7E-05 2.1E-09 61.5 3.6 43 28-70 272-316 (494)
264 PRK05642 DNA replication initi 97.5 0.00026 5.5E-09 53.7 5.6 38 32-69 45-87 (234)
265 TIGR00064 ftsY signal recognit 97.5 0.00017 3.6E-09 56.0 4.6 35 30-64 70-109 (272)
266 PRK06620 hypothetical protein; 97.5 0.00012 2.6E-09 54.8 3.6 30 33-62 45-74 (214)
267 PRK14242 phosphate transporter 97.5 2.2E-05 4.7E-10 59.7 -0.4 35 21-55 21-55 (253)
268 TIGR00750 lao LAO/AO transport 97.5 0.00019 4.2E-09 56.2 4.9 39 18-56 20-58 (300)
269 COG2255 RuvB Holliday junction 97.5 0.00011 2.4E-09 57.3 3.5 31 29-59 49-79 (332)
270 PRK13342 recombination factor 97.5 0.00011 2.4E-09 60.0 3.7 33 29-61 33-65 (413)
271 PRK14964 DNA polymerase III su 97.5 0.00019 4.2E-09 60.0 5.1 38 22-59 25-62 (491)
272 COG1124 DppF ABC-type dipeptid 97.5 6.3E-05 1.4E-09 57.3 2.0 35 19-53 20-54 (252)
273 PRK08084 DNA replication initi 97.5 0.00014 3E-09 55.1 3.9 37 30-66 43-84 (235)
274 PF00625 Guanylate_kin: Guanyl 97.5 0.00015 3.3E-09 52.6 3.9 25 32-56 2-26 (183)
275 cd03263 ABC_subfamily_A The AB 97.5 4.4E-05 9.5E-10 56.7 1.0 35 21-55 17-51 (220)
276 PRK05506 bifunctional sulfate 97.4 0.00013 2.8E-09 62.7 3.9 41 28-68 456-501 (632)
277 TIGR00362 DnaA chromosomal rep 97.4 0.00097 2.1E-08 54.2 8.8 39 33-71 137-182 (405)
278 PRK12723 flagellar biosynthesi 97.4 0.00064 1.4E-08 55.3 7.6 26 31-56 173-198 (388)
279 PRK15455 PrkA family serine pr 97.4 0.00023 5E-09 60.6 5.2 30 27-56 98-127 (644)
280 TIGR01166 cbiO cobalt transpor 97.4 7.6E-05 1.7E-09 54.3 2.1 35 21-55 7-41 (190)
281 PLN02318 phosphoribulokinase/u 97.4 0.00018 3.8E-09 61.4 4.4 38 29-66 62-100 (656)
282 KOG2004 Mitochondrial ATP-depe 97.4 9.3E-05 2E-09 63.9 2.8 42 28-69 434-477 (906)
283 PRK14088 dnaA chromosomal repl 97.4 0.00068 1.5E-08 56.0 7.8 39 33-71 131-176 (440)
284 cd01130 VirB11-like_ATPase Typ 97.4 0.0002 4.3E-09 52.2 4.2 29 28-56 21-49 (186)
285 TIGR02673 FtsE cell division A 97.4 8.1E-05 1.7E-09 55.1 2.1 35 21-55 17-51 (214)
286 TIGR03880 KaiC_arch_3 KaiC dom 97.4 0.00017 3.6E-09 53.9 3.8 53 19-71 3-60 (224)
287 PRK08939 primosomal protein Dn 97.4 0.0003 6.5E-09 55.5 5.4 42 31-72 155-201 (306)
288 PRK14960 DNA polymerase III su 97.4 0.00032 6.9E-09 60.5 5.9 38 22-59 27-64 (702)
289 PF00931 NB-ARC: NB-ARC domain 97.4 0.0003 6.6E-09 53.9 5.3 99 17-129 4-120 (287)
290 CHL00206 ycf2 Ycf2; Provisiona 97.4 0.00012 2.7E-09 68.8 3.5 39 30-68 1628-1668(2281)
291 PF02367 UPF0079: Uncharacteri 97.4 0.00024 5.2E-09 49.0 4.2 30 30-59 13-42 (123)
292 KOG0651 26S proteasome regulat 97.4 0.00036 7.7E-09 55.3 5.6 44 28-71 162-207 (388)
293 cd03259 ABC_Carb_Solutes_like 97.4 8.5E-05 1.9E-09 55.0 2.1 35 21-55 15-49 (213)
294 COG1120 FepC ABC-type cobalami 97.4 7E-05 1.5E-09 57.7 1.6 36 21-56 17-52 (258)
295 cd03301 ABC_MalK_N The N-termi 97.4 8E-05 1.7E-09 55.0 1.8 35 21-55 15-49 (213)
296 PF01591 6PF2K: 6-phosphofruct 97.4 0.0017 3.8E-08 49.0 9.1 45 29-73 9-58 (222)
297 PRK06893 DNA replication initi 97.4 0.00021 4.5E-09 53.9 4.1 34 31-64 38-76 (229)
298 PRK14955 DNA polymerase III su 97.4 0.00033 7E-09 57.0 5.5 32 28-59 34-65 (397)
299 PLN03025 replication factor C 97.4 0.00026 5.6E-09 55.8 4.7 26 31-56 33-58 (319)
300 TIGR01243 CDC48 AAA family ATP 97.4 0.00015 3.3E-09 63.2 3.7 33 29-61 209-241 (733)
301 cd03234 ABCG_White The White s 97.4 7.5E-05 1.6E-09 55.9 1.5 36 20-55 21-56 (226)
302 cd03225 ABC_cobalt_CbiO_domain 97.4 9E-05 2E-09 54.7 1.9 35 21-55 16-50 (211)
303 cd03250 ABCC_MRP_domain1 Domai 97.4 6E-05 1.3E-09 55.5 0.9 36 21-56 20-55 (204)
304 cd03235 ABC_Metallic_Cations A 97.4 8.5E-05 1.8E-09 55.0 1.7 35 21-55 14-48 (213)
305 PRK00149 dnaA chromosomal repl 97.4 0.00047 1E-08 56.9 6.2 39 33-71 149-194 (450)
306 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.4 7.4E-05 1.6E-09 55.4 1.3 36 21-56 19-54 (218)
307 PRK10247 putative ABC transpor 97.4 9.1E-05 2E-09 55.5 1.8 34 21-54 22-55 (225)
308 cd03292 ABC_FtsE_transporter F 97.4 8.1E-05 1.8E-09 55.0 1.5 36 21-56 16-51 (214)
309 TIGR02315 ABC_phnC phosphonate 97.4 0.00011 2.3E-09 55.5 2.1 35 21-55 17-51 (243)
310 PF00025 Arf: ADP-ribosylation 97.4 0.0003 6.5E-09 50.7 4.3 36 18-54 1-36 (175)
311 TIGR00416 sms DNA repair prote 97.3 0.00054 1.2E-08 56.8 6.3 53 18-70 80-137 (454)
312 cd03262 ABC_HisP_GlnQ_permease 97.3 9.9E-05 2.1E-09 54.5 1.8 35 21-55 15-49 (213)
313 cd03115 SRP The signal recogni 97.3 0.00021 4.6E-09 51.2 3.5 31 34-64 2-37 (173)
314 TIGR00960 3a0501s02 Type II (G 97.3 7.6E-05 1.6E-09 55.3 1.1 36 21-56 18-53 (216)
315 TIGR00763 lon ATP-dependent pr 97.3 0.00036 7.8E-09 61.3 5.5 31 31-61 346-376 (775)
316 PRK10646 ADP-binding protein; 97.3 0.00065 1.4E-08 48.5 5.9 42 17-58 13-54 (153)
317 PF00005 ABC_tran: ABC transpo 97.3 3.1E-05 6.6E-10 53.2 -0.9 30 27-56 6-35 (137)
318 PLN03046 D-glycerate 3-kinase; 97.3 0.00017 3.7E-09 59.2 3.2 39 29-67 209-252 (460)
319 COG0194 Gmk Guanylate kinase [ 97.3 0.00019 4.1E-09 52.7 3.2 27 31-57 3-29 (191)
320 TIGR02770 nickel_nikD nickel i 97.3 0.0001 2.2E-09 55.3 1.8 32 24-55 4-35 (230)
321 PF07726 AAA_3: ATPase family 97.3 0.00011 2.5E-09 51.0 1.9 27 34-60 1-27 (131)
322 COG1219 ClpX ATP-dependent pro 97.3 0.0002 4.3E-09 56.9 3.4 30 32-61 97-126 (408)
323 TIGR02237 recomb_radB DNA repa 97.3 0.00027 5.8E-09 52.1 4.0 41 25-65 5-50 (209)
324 COG1703 ArgK Putative periplas 97.3 0.00042 9.1E-09 54.4 5.2 39 18-56 37-75 (323)
325 cd03219 ABC_Mj1267_LivG_branch 97.3 9.6E-05 2.1E-09 55.5 1.6 35 21-55 15-49 (236)
326 PRK14949 DNA polymerase III su 97.3 0.00041 9E-09 61.5 5.7 51 9-59 10-65 (944)
327 PRK14958 DNA polymerase III su 97.3 0.00044 9.5E-09 58.1 5.6 33 27-59 33-65 (509)
328 cd03269 ABC_putative_ATPase Th 97.3 7.9E-05 1.7E-09 55.0 1.1 34 22-55 16-49 (210)
329 cd03224 ABC_TM1139_LivF_branch 97.3 8.8E-05 1.9E-09 55.1 1.3 35 21-55 15-49 (222)
330 cd03226 ABC_cobalt_CbiO_domain 97.3 9.4E-05 2E-09 54.5 1.5 35 21-55 15-49 (205)
331 COG0396 sufC Cysteine desulfur 97.3 0.00017 3.6E-09 54.8 2.8 35 20-54 18-52 (251)
332 cd03265 ABC_DrrA DrrA is the A 97.3 0.00011 2.4E-09 54.6 1.9 35 21-55 15-49 (220)
333 PRK14969 DNA polymerase III su 97.3 0.00047 1E-08 58.2 5.8 32 28-59 34-65 (527)
334 TIGR03608 L_ocin_972_ABC putat 97.3 9.1E-05 2E-09 54.4 1.4 36 21-56 13-48 (206)
335 COG3265 GntK Gluconate kinase 97.3 0.0002 4.4E-09 50.9 3.0 31 38-68 1-31 (161)
336 PRK14957 DNA polymerase III su 97.3 0.00049 1.1E-08 58.3 5.8 31 28-58 34-64 (546)
337 cd03257 ABC_NikE_OppD_transpor 97.3 0.00012 2.5E-09 54.6 1.9 36 21-56 20-55 (228)
338 cd03218 ABC_YhbG The ABC trans 97.3 0.00012 2.6E-09 54.8 2.0 35 21-55 15-49 (232)
339 PRK11629 lolD lipoprotein tran 97.3 8.5E-05 1.8E-09 55.8 1.2 35 21-55 24-58 (233)
340 TIGR01978 sufC FeS assembly AT 97.3 0.00011 2.3E-09 55.4 1.7 35 21-55 15-49 (243)
341 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0003 6.5E-09 52.6 4.1 36 19-54 6-41 (235)
342 cd01918 HprK_C HprK/P, the bif 97.3 0.00024 5.3E-09 50.5 3.4 32 32-64 14-45 (149)
343 cd03258 ABC_MetN_methionine_tr 97.3 0.00011 2.4E-09 55.0 1.8 36 21-56 20-55 (233)
344 TIGR01618 phage_P_loop phage n 97.3 0.00028 6.1E-09 53.2 3.9 36 29-66 9-44 (220)
345 PF06309 Torsin: Torsin; Inte 97.3 0.00065 1.4E-08 47.0 5.3 29 28-56 49-77 (127)
346 KOG0737 AAA+-type ATPase [Post 97.3 0.00017 3.6E-09 57.9 2.8 43 29-71 124-168 (386)
347 cd03261 ABC_Org_Solvent_Resist 97.3 9.2E-05 2E-09 55.6 1.2 35 21-55 15-49 (235)
348 cd03256 ABC_PhnC_transporter A 97.3 0.0001 2.3E-09 55.4 1.5 35 21-55 16-50 (241)
349 cd03296 ABC_CysA_sulfate_impor 97.3 0.00011 2.3E-09 55.5 1.6 35 21-55 17-51 (239)
350 PRK11264 putative amino-acid A 97.3 0.00013 2.7E-09 55.3 1.9 35 21-55 18-52 (250)
351 cd02026 PRK Phosphoribulokinas 97.3 0.00015 3.3E-09 56.2 2.4 34 34-67 1-37 (273)
352 TIGR03864 PQQ_ABC_ATP ABC tran 97.3 0.0001 2.2E-09 55.5 1.4 35 21-55 16-50 (236)
353 TIGR03410 urea_trans_UrtE urea 97.3 0.00012 2.7E-09 54.7 1.8 36 21-56 15-50 (230)
354 cd03254 ABCC_Glucan_exporter_l 97.3 0.00016 3.4E-09 54.0 2.4 36 21-56 18-53 (229)
355 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00029 6.3E-09 47.4 3.4 39 27-67 10-48 (107)
356 cd03260 ABC_PstB_phosphate_tra 97.3 0.00011 2.3E-09 55.0 1.5 36 21-56 15-50 (227)
357 cd03264 ABC_drug_resistance_li 97.3 0.00011 2.5E-09 54.2 1.6 34 21-55 15-48 (211)
358 PRK11034 clpA ATP-dependent Cl 97.3 0.00029 6.3E-09 61.7 4.3 37 31-67 487-525 (758)
359 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.00013 2.8E-09 56.1 1.9 39 26-64 30-73 (259)
360 PF10662 PduV-EutP: Ethanolami 97.3 0.00022 4.8E-09 50.3 2.9 23 33-55 2-24 (143)
361 cd01120 RecA-like_NTPases RecA 97.3 0.00022 4.9E-09 49.4 3.0 35 34-68 1-40 (165)
362 PRK10744 pstB phosphate transp 97.3 0.00012 2.6E-09 56.0 1.7 35 21-55 28-62 (260)
363 cd03293 ABC_NrtD_SsuB_transpor 97.3 9.3E-05 2E-09 55.1 1.0 35 21-55 19-53 (220)
364 cd03245 ABCC_bacteriocin_expor 97.3 0.00015 3.2E-09 53.9 2.1 35 21-55 19-53 (220)
365 PRK10751 molybdopterin-guanine 97.3 0.00034 7.4E-09 50.9 3.9 26 31-56 5-30 (173)
366 cd03266 ABC_NatA_sodium_export 97.3 0.00015 3.2E-09 53.8 2.0 35 21-55 20-54 (218)
367 TIGR02211 LolD_lipo_ex lipopro 97.3 0.00011 2.3E-09 54.7 1.3 35 21-55 20-54 (221)
368 PRK05973 replicative DNA helic 97.3 0.00028 6.1E-09 53.8 3.6 41 26-66 58-103 (237)
369 PRK10787 DNA-binding ATP-depen 97.3 0.00043 9.4E-09 60.9 5.2 32 29-60 346-377 (784)
370 PRK14247 phosphate ABC transpo 97.3 0.00014 3E-09 55.2 1.9 35 21-55 18-52 (250)
371 KOG3877 NADH:ubiquinone oxidor 97.3 0.00028 6.1E-09 55.1 3.5 40 29-68 68-110 (393)
372 PRK15177 Vi polysaccharide exp 97.3 0.00013 2.9E-09 54.3 1.7 32 23-54 4-35 (213)
373 TIGR00101 ureG urease accessor 97.3 0.00033 7.2E-09 51.9 3.8 25 32-56 1-25 (199)
374 TIGR02323 CP_lyasePhnK phospho 97.3 0.00013 2.9E-09 55.3 1.7 35 22-56 19-53 (253)
375 cd03228 ABCC_MRP_Like The MRP 97.3 0.00017 3.8E-09 51.7 2.2 36 21-56 17-52 (171)
376 cd03251 ABCC_MsbA MsbA is an e 97.3 0.00015 3.2E-09 54.3 2.0 36 21-56 17-52 (234)
377 cd02029 PRK_like Phosphoribulo 97.3 0.00017 3.7E-09 56.0 2.2 35 34-68 1-40 (277)
378 PRK05896 DNA polymerase III su 97.3 0.00064 1.4E-08 58.1 5.9 32 28-59 34-65 (605)
379 cd03247 ABCC_cytochrome_bd The 97.3 0.00012 2.6E-09 52.8 1.3 36 21-56 17-52 (178)
380 cd01131 PilT Pilus retraction 97.2 0.0003 6.5E-09 51.9 3.5 24 34-57 3-26 (198)
381 cd03238 ABC_UvrA The excision 97.2 0.00014 3.1E-09 52.9 1.7 31 23-53 12-42 (176)
382 PRK13695 putative NTPase; Prov 97.2 0.00032 6.9E-09 50.4 3.5 24 33-56 1-24 (174)
383 cd03230 ABC_DR_subfamily_A Thi 97.2 0.00013 2.9E-09 52.4 1.5 35 21-55 15-49 (173)
384 cd03215 ABC_Carb_Monos_II This 97.2 0.00015 3.3E-09 52.5 1.8 36 21-56 15-50 (182)
385 COG1117 PstB ABC-type phosphat 97.2 0.00018 4E-09 54.2 2.2 46 10-55 11-56 (253)
386 COG4639 Predicted kinase [Gene 97.2 0.0018 4E-08 46.4 7.2 36 33-70 3-38 (168)
387 PRK11124 artP arginine transpo 97.2 0.00013 2.8E-09 55.0 1.5 35 21-55 17-51 (242)
388 PRK13540 cytochrome c biogenes 97.2 0.00013 2.7E-09 53.7 1.3 35 21-55 16-50 (200)
389 PRK05416 glmZ(sRNA)-inactivati 97.2 0.00035 7.5E-09 54.7 3.8 30 31-61 5-34 (288)
390 COG1220 HslU ATP-dependent pro 97.2 0.00028 6.1E-09 56.5 3.3 41 32-72 50-105 (444)
391 PRK14974 cell division protein 97.2 0.00036 7.8E-09 55.8 4.0 26 31-56 139-164 (336)
392 PRK14951 DNA polymerase III su 97.2 0.00054 1.2E-08 58.8 5.3 38 22-59 28-65 (618)
393 PRK14250 phosphate ABC transpo 97.2 0.00014 3E-09 55.0 1.6 35 21-55 18-52 (241)
394 cd03248 ABCC_TAP TAP, the Tran 97.2 0.0002 4.3E-09 53.5 2.4 35 21-55 29-63 (226)
395 PRK10584 putative ABC transpor 97.2 0.00013 2.8E-09 54.5 1.4 35 21-55 25-59 (228)
396 cd03244 ABCC_MRP_domain2 Domai 97.2 0.0002 4.4E-09 53.2 2.4 35 21-55 19-53 (221)
397 PRK11248 tauB taurine transpor 97.2 0.00013 2.8E-09 55.8 1.3 35 21-55 16-50 (255)
398 PRK14251 phosphate ABC transpo 97.2 0.00015 3.3E-09 55.0 1.7 35 21-55 19-53 (251)
399 TIGR02868 CydC thiol reductant 97.2 0.00015 3.2E-09 60.7 1.8 36 21-56 350-385 (529)
400 COG1224 TIP49 DNA helicase TIP 97.2 0.00033 7.2E-09 56.4 3.7 44 25-68 58-105 (450)
401 PRK11701 phnK phosphonate C-P 97.2 0.00013 2.8E-09 55.7 1.3 36 21-56 21-56 (258)
402 PRK14256 phosphate ABC transpo 97.2 0.00014 3E-09 55.3 1.5 35 21-55 19-53 (252)
403 PRK13538 cytochrome c biogenes 97.2 0.00014 3.1E-09 53.6 1.5 35 21-55 16-50 (204)
404 cd03268 ABC_BcrA_bacitracin_re 97.2 0.00014 3E-09 53.6 1.4 35 21-55 15-49 (208)
405 cd03232 ABC_PDR_domain2 The pl 97.2 0.00013 2.7E-09 53.4 1.2 34 21-54 22-55 (192)
406 cd03223 ABCD_peroxisomal_ALDP 97.2 0.00016 3.4E-09 51.9 1.6 35 21-55 16-50 (166)
407 PRK13543 cytochrome c biogenes 97.2 0.00016 3.5E-09 53.7 1.8 36 21-56 26-61 (214)
408 TIGR00972 3a0107s01c2 phosphat 97.2 0.00018 3.8E-09 54.6 2.0 35 21-55 16-50 (247)
409 cd03290 ABCC_SUR1_N The SUR do 97.2 0.00018 3.9E-09 53.5 2.0 36 21-56 16-51 (218)
410 CHL00131 ycf16 sulfate ABC tra 97.2 0.00015 3.3E-09 55.0 1.6 34 21-54 22-55 (252)
411 KOG0727 26S proteasome regulat 97.2 0.0023 5E-08 49.7 8.0 47 28-74 185-233 (408)
412 PRK14262 phosphate ABC transpo 97.2 0.00015 3.3E-09 55.0 1.5 34 21-54 18-51 (250)
413 PRK13539 cytochrome c biogenes 97.2 0.00015 3.3E-09 53.6 1.5 35 21-55 17-51 (207)
414 PRK14267 phosphate ABC transpo 97.2 0.00017 3.7E-09 54.8 1.8 35 21-55 19-53 (253)
415 cd04155 Arl3 Arl3 subfamily. 97.2 0.00055 1.2E-08 48.4 4.3 26 30-55 12-37 (173)
416 PRK09493 glnQ glutamine ABC tr 97.2 0.00016 3.4E-09 54.5 1.6 35 21-55 16-50 (240)
417 PRK14086 dnaA chromosomal repl 97.2 0.00089 1.9E-08 57.3 6.2 38 34-71 316-360 (617)
418 PRK14240 phosphate transporter 97.2 0.00018 3.8E-09 54.6 1.8 34 21-54 18-51 (250)
419 PRK10908 cell division protein 97.2 0.00015 3.2E-09 54.0 1.4 36 21-56 17-52 (222)
420 PRK04301 radA DNA repair and r 97.2 0.0009 2E-08 52.8 5.9 31 25-55 95-125 (317)
421 PRK11300 livG leucine/isoleuci 97.2 9.5E-05 2.1E-09 56.2 0.4 35 21-55 20-54 (255)
422 COG1122 CbiO ABC-type cobalt t 97.2 0.00015 3.3E-09 55.1 1.5 34 21-54 19-52 (235)
423 COG1223 Predicted ATPase (AAA+ 97.2 0.00028 6.1E-09 54.8 2.9 41 32-72 151-193 (368)
424 PRK14970 DNA polymerase III su 97.2 0.00079 1.7E-08 53.9 5.6 31 28-58 35-65 (367)
425 PRK14241 phosphate transporter 97.2 0.00016 3.4E-09 55.2 1.5 35 21-55 19-53 (258)
426 PRK14253 phosphate ABC transpo 97.2 0.00019 4.1E-09 54.4 1.9 35 21-55 18-52 (249)
427 PRK13541 cytochrome c biogenes 97.2 0.00027 5.8E-09 51.8 2.7 31 25-55 19-49 (195)
428 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.2 0.00018 3.9E-09 54.1 1.8 35 21-55 18-52 (238)
429 KOG0739 AAA+-type ATPase [Post 97.2 0.00079 1.7E-08 53.3 5.3 42 31-72 165-208 (439)
430 cd03229 ABC_Class3 This class 97.2 0.00014 3.1E-09 52.5 1.2 35 21-55 15-49 (178)
431 PRK14248 phosphate ABC transpo 97.2 0.00017 3.7E-09 55.3 1.7 34 21-54 36-69 (268)
432 cd03267 ABC_NatA_like Similar 97.2 0.00017 3.8E-09 54.4 1.6 35 21-55 36-70 (236)
433 cd03252 ABCC_Hemolysin The ABC 97.2 0.00019 4E-09 54.0 1.8 36 21-56 17-52 (237)
434 TIGR02324 CP_lyasePhnL phospho 97.2 0.00017 3.7E-09 53.8 1.5 36 21-56 23-58 (224)
435 PRK14255 phosphate ABC transpo 97.2 0.00017 3.6E-09 54.8 1.5 34 21-54 20-53 (252)
436 PRK13648 cbiO cobalt transport 97.2 0.00019 4.1E-09 55.2 1.8 35 21-55 24-58 (269)
437 cd03214 ABC_Iron-Siderophores_ 97.2 0.00017 3.6E-09 52.2 1.4 36 21-56 14-49 (180)
438 PRK14273 phosphate ABC transpo 97.2 0.00021 4.6E-09 54.3 2.1 35 21-55 22-56 (254)
439 TIGR01189 ccmA heme ABC export 97.2 0.00016 3.5E-09 53.0 1.3 35 22-56 16-50 (198)
440 cd03246 ABCC_Protease_Secretio 97.2 0.00019 4.1E-09 51.6 1.7 36 21-56 17-52 (173)
441 cd03233 ABC_PDR_domain1 The pl 97.2 0.00014 3.1E-09 53.6 1.1 36 21-56 22-57 (202)
442 TIGR01184 ntrCD nitrate transp 97.2 0.00021 4.5E-09 53.7 1.9 31 25-55 4-34 (230)
443 KOG0635 Adenosine 5'-phosphosu 97.2 0.00039 8.4E-09 49.9 3.1 34 23-56 22-55 (207)
444 KOG0734 AAA+-type ATPase conta 97.2 0.00054 1.2E-08 57.7 4.5 35 30-64 335-369 (752)
445 PRK13638 cbiO cobalt transport 97.2 0.0002 4.4E-09 55.1 1.9 35 21-55 16-50 (271)
446 PF03205 MobB: Molybdopterin g 97.2 0.00041 8.9E-09 48.6 3.3 24 33-56 1-24 (140)
447 cd03369 ABCC_NFT1 Domain 2 of 97.2 0.00025 5.4E-09 52.3 2.3 35 21-55 23-57 (207)
448 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.2 0.00014 3.1E-09 54.5 1.0 34 22-55 38-71 (224)
449 cd03213 ABCG_EPDR ABCG transpo 97.2 0.00023 4.9E-09 52.2 2.0 36 21-56 24-59 (194)
450 PRK14261 phosphate ABC transpo 97.2 0.00018 3.8E-09 54.8 1.5 34 21-54 21-54 (253)
451 PRK13649 cbiO cobalt transport 97.2 0.00018 3.8E-09 55.6 1.5 35 21-55 22-56 (280)
452 cd03295 ABC_OpuCA_Osmoprotecti 97.2 0.00017 3.7E-09 54.5 1.4 35 21-55 16-50 (242)
453 TIGR03499 FlhF flagellar biosy 97.2 0.00047 1E-08 53.7 3.8 35 31-65 193-234 (282)
454 PRK14274 phosphate ABC transpo 97.2 0.00016 3.4E-09 55.3 1.1 35 21-55 27-61 (259)
455 cd03216 ABC_Carb_Monos_I This 97.2 0.00016 3.4E-09 51.7 1.1 35 21-55 15-49 (163)
456 KOG1969 DNA replication checkp 97.2 0.00036 7.8E-09 60.4 3.4 44 20-63 312-357 (877)
457 cd01393 recA_like RecA is a b 97.2 0.0006 1.3E-08 50.7 4.3 38 18-55 5-42 (226)
458 cd03253 ABCC_ATM1_transporter 97.2 0.0002 4.4E-09 53.7 1.7 35 21-55 16-50 (236)
459 PRK11247 ssuB aliphatic sulfon 97.2 0.00019 4E-09 55.1 1.5 35 21-55 27-61 (257)
460 PRK10895 lipopolysaccharide AB 97.1 0.00016 3.6E-09 54.5 1.2 35 21-55 18-52 (241)
461 PF01926 MMR_HSR1: 50S ribosom 97.1 0.00041 8.9E-09 46.3 3.0 21 34-54 1-21 (116)
462 PRK00411 cdc6 cell division co 97.1 0.0008 1.7E-08 54.1 5.2 40 17-56 38-79 (394)
463 COG1855 ATPase (PilT family) [ 97.1 0.00035 7.5E-09 57.8 3.1 25 32-56 263-287 (604)
464 PRK11331 5-methylcytosine-spec 97.1 0.0005 1.1E-08 56.9 4.1 26 32-57 194-219 (459)
465 TIGR03005 ectoine_ehuA ectoine 97.1 0.00017 3.7E-09 54.8 1.3 35 21-55 15-49 (252)
466 KOG1970 Checkpoint RAD17-RFC c 97.1 0.00078 1.7E-08 56.8 5.2 32 29-60 107-138 (634)
467 PRK13341 recombination factor 97.1 0.00051 1.1E-08 60.0 4.3 37 29-65 49-85 (725)
468 PRK14272 phosphate ABC transpo 97.1 0.00023 5E-09 54.0 1.9 35 21-55 19-53 (252)
469 PRK14952 DNA polymerase III su 97.1 0.00076 1.7E-08 57.6 5.2 38 22-59 25-62 (584)
470 PRK10418 nikD nickel transport 97.1 0.00022 4.7E-09 54.4 1.8 35 21-55 18-52 (254)
471 PRK10867 signal recognition pa 97.1 0.00051 1.1E-08 56.6 4.1 35 30-64 98-138 (433)
472 PRK08691 DNA polymerase III su 97.1 0.00092 2E-08 58.0 5.7 32 28-59 34-65 (709)
473 PRK14948 DNA polymerase III su 97.1 0.00085 1.8E-08 57.7 5.5 38 22-59 28-65 (620)
474 cd03217 ABC_FeS_Assembly ABC-t 97.1 0.00022 4.8E-09 52.5 1.8 35 21-55 15-49 (200)
475 PRK13645 cbiO cobalt transport 97.1 0.00017 3.8E-09 56.0 1.2 36 21-56 26-61 (289)
476 cd03298 ABC_ThiQ_thiamine_tran 97.1 0.00032 7E-09 51.8 2.6 33 24-56 16-48 (211)
477 COG0802 Predicted ATPase or ki 97.1 0.0015 3.2E-08 46.4 5.8 36 23-58 16-51 (149)
478 PRK07994 DNA polymerase III su 97.1 0.00087 1.9E-08 57.8 5.5 32 28-59 34-65 (647)
479 TIGR03238 dnd_assoc_3 dnd syst 97.1 0.00036 7.8E-09 58.1 3.1 35 16-50 16-50 (504)
480 cd04163 Era Era subfamily. Er 97.1 0.00045 9.7E-09 47.6 3.2 24 32-55 3-26 (168)
481 PRK14244 phosphate ABC transpo 97.1 0.00021 4.5E-09 54.3 1.6 35 21-55 20-54 (251)
482 PRK14270 phosphate ABC transpo 97.1 0.00023 5E-09 54.1 1.8 34 21-54 19-52 (251)
483 cd03294 ABC_Pro_Gly_Bertaine T 97.1 0.0002 4.4E-09 55.1 1.5 35 22-56 40-74 (269)
484 COG2274 SunT ABC-type bacterio 97.1 0.00029 6.4E-09 61.3 2.6 37 20-56 487-523 (709)
485 PRK14269 phosphate ABC transpo 97.1 0.00021 4.6E-09 54.1 1.6 35 21-55 17-51 (246)
486 PRK07003 DNA polymerase III su 97.1 0.001 2.2E-08 58.3 5.8 32 28-59 34-65 (830)
487 TIGR02769 nickel_nikE nickel i 97.1 0.00021 4.6E-09 54.8 1.6 36 21-56 26-61 (265)
488 PRK14259 phosphate ABC transpo 97.1 0.00021 4.5E-09 55.0 1.5 35 21-55 28-62 (269)
489 COG4778 PhnL ABC-type phosphon 97.1 0.00025 5.5E-09 52.0 1.8 36 22-57 27-62 (235)
490 PRK14950 DNA polymerase III su 97.1 0.00086 1.9E-08 57.2 5.3 33 28-60 34-66 (585)
491 PRK13548 hmuV hemin importer A 97.1 0.00021 4.4E-09 54.7 1.4 35 21-55 17-51 (258)
492 PRK00440 rfc replication facto 97.1 0.00083 1.8E-08 52.2 4.9 24 33-56 39-62 (319)
493 PRK14268 phosphate ABC transpo 97.1 0.00022 4.7E-09 54.5 1.6 34 21-54 27-60 (258)
494 PRK12323 DNA polymerase III su 97.1 0.001 2.2E-08 57.4 5.7 37 22-58 28-64 (700)
495 PRK14239 phosphate transporter 97.1 0.00023 5.1E-09 53.9 1.7 34 21-54 20-53 (252)
496 PRK14249 phosphate ABC transpo 97.1 0.00024 5.2E-09 53.9 1.7 36 21-56 19-54 (251)
497 COG4598 HisP ABC-type histidin 97.1 0.00025 5.4E-09 52.5 1.7 48 6-53 6-53 (256)
498 PRK11614 livF leucine/isoleuci 97.1 0.0002 4.3E-09 53.9 1.3 35 21-55 20-54 (237)
499 COG3911 Predicted ATPase [Gene 97.1 0.00052 1.1E-08 49.1 3.2 23 33-55 10-32 (183)
500 TIGR02639 ClpA ATP-dependent C 97.1 0.0008 1.7E-08 58.8 5.1 26 31-56 202-227 (731)
No 1
>PLN02674 adenylate kinase
Probab=99.98 E-value=8.6e-32 Score=204.56 Aligned_cols=129 Identities=93% Similarity=1.376 Sum_probs=122.1
Q ss_pred chhhhhcCCCCchhHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHH
Q 032438 3 SSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAK 82 (141)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~ 82 (141)
++||+.+.++|..|++.++..++....+++++|+|+|||||||+|+|+.|+++||+.|+|++++++++++.++++|..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~ 81 (244)
T PLN02674 2 SAAAANLEDVPSVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAK 81 (244)
T ss_pred cccccccccCchHHHHHHHHHHHhhccccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHH
Confidence 67888999999999999999998766677789999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcchHHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHhcccc
Q 032438 83 EAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 83 ~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g~IldG~P~~~~q~~~l~~~ 131 (141)
+++..|.++|++++.+++.+++.+.++..|||||||||+..|++.|++.
T Consensus 82 ~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~ 130 (244)
T PLN02674 82 EAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEM 130 (244)
T ss_pred HHHHcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHH
Confidence 9999999999999999999999998888999999999999999988764
No 2
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.95 E-value=2.3e-27 Score=168.04 Aligned_cols=94 Identities=46% Similarity=0.910 Sum_probs=88.2
Q ss_pred EECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCeEEEe
Q 032438 37 LVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILD 116 (141)
Q Consensus 37 i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g~Ild 116 (141)
|+|||||||+|+|+.||++||+.|+|+++++++++..+++.|..+++++.+|..+|++++.+++..++.+..+..|||||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999988678999999
Q ss_pred CCCCCHHHHHhccc
Q 032438 117 GFPRTEVQAQKVSP 130 (141)
Q Consensus 117 G~P~~~~q~~~l~~ 130 (141)
||||+.+|++.|++
T Consensus 81 GfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 81 GFPRTLEQAEALEE 94 (151)
T ss_dssp SB-SSHHHHHHHHH
T ss_pred eccccHHHHHHHHH
Confidence 99999999999988
No 3
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.94 E-value=8.5e-27 Score=168.49 Aligned_cols=105 Identities=33% Similarity=0.616 Sum_probs=99.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHc-cCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCC
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~-~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~ 107 (141)
.+.+++|||+|+|||||.|+|.+++++|++.|+|++||+|++++. +++.|..+++++.+|..+|.+++..+|.+.|.+.
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 456889999999999999999999999999999999999999987 9999999999999999999999999999999988
Q ss_pred CCCCeEEEeCCCCCHHHHHhcccccc
Q 032438 108 SCQKGFILDGFPRTEVQAQKVSPSST 133 (141)
Q Consensus 108 ~~~~g~IldG~P~~~~q~~~l~~~~~ 133 (141)
...++|+||||||+..|+..|++.+.
T Consensus 85 ~~~~~fLIDGyPR~~~q~~~fe~~i~ 110 (195)
T KOG3079|consen 85 GDSNGFLIDGYPRNVDQLVEFERKIQ 110 (195)
T ss_pred CCCCeEEecCCCCChHHHHHHHHHhc
Confidence 77778999999999999999998774
No 4
>PLN02459 probable adenylate kinase
Probab=99.94 E-value=4.6e-26 Score=174.29 Aligned_cols=102 Identities=33% Similarity=0.644 Sum_probs=95.3
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCC--C
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP--S 108 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~--~ 108 (141)
.+.+|+|+|||||||+|+|+.|++.||+.|+++++++++++..++++|..++.++.+|.++|++++.+++.++|.+. .
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999875 3
Q ss_pred CCCeEEEeCCCCCHHHHHhccccc
Q 032438 109 CQKGFILDGFPRTEVQAQKVSPSS 132 (141)
Q Consensus 109 ~~~g~IldG~P~~~~q~~~l~~~~ 132 (141)
...|||||||||+..|++.|++..
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~Le~~~ 131 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEILEGVT 131 (261)
T ss_pred CCceEEEeCCCCCHHHHHHHHhcC
Confidence 578999999999999999998753
No 5
>PRK14529 adenylate kinase; Provisional
Probab=99.93 E-value=5.7e-26 Score=170.79 Aligned_cols=97 Identities=43% Similarity=0.826 Sum_probs=93.0
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCeE
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g~ 113 (141)
+|+|+|||||||||+++.|+++|++.|+|.++++++++..+++++..+++++.+|.++|++++.+++.++|.+.+ .+||
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~-~~g~ 80 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG-KNGW 80 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC-CCcE
Confidence 699999999999999999999999999999999999999899999999999999999999999999999998877 8899
Q ss_pred EEeCCCCCHHHHHhcccc
Q 032438 114 ILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 114 IldG~P~~~~q~~~l~~~ 131 (141)
|||||||+..||+.|++.
T Consensus 81 iLDGfPRt~~Qa~~l~~~ 98 (223)
T PRK14529 81 LLDGFPRNKVQAEKLWEA 98 (223)
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 999999999999998754
No 6
>PRK13808 adenylate kinase; Provisional
Probab=99.92 E-value=2.3e-25 Score=175.57 Aligned_cols=99 Identities=56% Similarity=0.939 Sum_probs=94.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
++|+|+|||||||||+++.|++.||+.|++++|++++++..+++.+..+.+++.+|.++|++++.+++.++|.+.++..|
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEeCCCCCHHHHHhcccc
Q 032438 113 FILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 113 ~IldG~P~~~~q~~~l~~~ 131 (141)
||||||||+.+|++.|++.
T Consensus 81 ~ILDGFPRt~~QA~~L~~l 99 (333)
T PRK13808 81 FILDGFPRTVPQAEALDAL 99 (333)
T ss_pred EEEeCCCCCHHHHHHHHHH
Confidence 9999999999999988653
No 7
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.92 E-value=4.1e-25 Score=166.92 Aligned_cols=101 Identities=38% Similarity=0.714 Sum_probs=94.7
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcC--CC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK--PS 108 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~--~~ 108 (141)
.|.+|+|+|||||||||+|+.||++||+.|+++++++++++..+++++..++.++.+|.++|++++.+++.+++.+ .+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 4578999999999999999999999999999999999999998899999999999999999999999999999988 55
Q ss_pred CCCeEEEeCCCCCHHHHHhcccc
Q 032438 109 CQKGFILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 109 ~~~g~IldG~P~~~~q~~~l~~~ 131 (141)
...|||||||||+..|++.|.+.
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~ 107 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKI 107 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhc
Confidence 67899999999999999998764
No 8
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.92 E-value=3.1e-25 Score=161.85 Aligned_cols=100 Identities=46% Similarity=0.814 Sum_probs=95.5
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
++|+|+|+|||||||+|+.|+++++++|+|.+++++......++++..++.++..|.++|++++..++..++.+.++..+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999887679
Q ss_pred EEEeCCCCCHHHHHhccccc
Q 032438 113 FILDGFPRTEVQAQKVSPSS 132 (141)
Q Consensus 113 ~IldG~P~~~~q~~~l~~~~ 132 (141)
||+|||||+..|++.+++.+
T Consensus 81 ~I~dg~PR~~~qa~~l~r~l 100 (178)
T COG0563 81 FILDGFPRTLCQARALKRLL 100 (178)
T ss_pred EEEeCCCCcHHHHHHHHHHH
Confidence 99999999999999999753
No 9
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.91 E-value=1.9e-24 Score=160.89 Aligned_cols=100 Identities=53% Similarity=0.869 Sum_probs=93.0
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCC-CCCe
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKG 112 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~-~~~g 112 (141)
+|+|+|+|||||||+|+.|+++||+.|+++++++++++...++.+..+..++.+|..+|++++.+++..++.+.+ ...|
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~ 80 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENG 80 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCc
Confidence 489999999999999999999999999999999999999889999999999999999999999999999998854 4689
Q ss_pred EEEeCCCCCHHHHHhcccccc
Q 032438 113 FILDGFPRTEVQAQKVSPSST 133 (141)
Q Consensus 113 ~IldG~P~~~~q~~~l~~~~~ 133 (141)
||||||||+..|++.|.+.+.
T Consensus 81 ~ilDGfPrt~~Qa~~l~~~~~ 101 (210)
T TIGR01351 81 FILDGFPRTLSQAEALDALLK 101 (210)
T ss_pred EEEeCCCCCHHHHHHHHHHhc
Confidence 999999999999999986543
No 10
>PRK14526 adenylate kinase; Provisional
Probab=99.91 E-value=2.4e-24 Score=160.96 Aligned_cols=98 Identities=38% Similarity=0.749 Sum_probs=93.6
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCeE
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g~ 113 (141)
+|+|+|+|||||||+++.|++.|++.|++.++++++++...++.+..+.+++++|.++|++++.+++.++|...++..||
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ 81 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF 81 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999887778899
Q ss_pred EEeCCCCCHHHHHhcccc
Q 032438 114 ILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 114 IldG~P~~~~q~~~l~~~ 131 (141)
|||||||+..|++.|++.
T Consensus 82 ilDGfPR~~~Qa~~l~~~ 99 (211)
T PRK14526 82 ILDGFPRNINQAKALDKF 99 (211)
T ss_pred EEECCCCCHHHHHHHHHh
Confidence 999999999999999764
No 11
>PRK14532 adenylate kinase; Provisional
Probab=99.91 E-value=3.4e-24 Score=156.59 Aligned_cols=98 Identities=47% Similarity=0.789 Sum_probs=92.6
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCeE
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g~ 113 (141)
+|+|+|+|||||||+|+.||++||+.|+++++++++++..+++.+..++.++..|..+|++++.+++.+++...++..||
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA 81 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence 68999999999999999999999999999999999999888999999999999999999999999999999888788899
Q ss_pred EEeCCCCCHHHHHhcccc
Q 032438 114 ILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 114 IldG~P~~~~q~~~l~~~ 131 (141)
|+|||||+..|++.+.+.
T Consensus 82 vldg~pr~~~q~~~~~~~ 99 (188)
T PRK14532 82 IFDGFPRTVAQAEALDKM 99 (188)
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 999999999999988643
No 12
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.91 E-value=5.7e-24 Score=158.80 Aligned_cols=99 Identities=55% Similarity=0.958 Sum_probs=93.4
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
.+|+|+|+|||||||+|+.||++||+.|+++++++++++...++.+..+..++.+|..+|++++.+++.+++.+.++..|
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence 37999999999999999999999999999999999999998899999999999999999999999999999998877779
Q ss_pred EEEeCCCCCHHHHHhcccc
Q 032438 113 FILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 113 ~IldG~P~~~~q~~~l~~~ 131 (141)
|||||||++..|++.|++.
T Consensus 81 ~VlDGfPr~~~qa~~l~~~ 99 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEM 99 (215)
T ss_pred EEEecCCCCHHHHHHHHHH
Confidence 9999999999999999653
No 13
>PRK14528 adenylate kinase; Provisional
Probab=99.90 E-value=1e-23 Score=154.55 Aligned_cols=100 Identities=46% Similarity=0.871 Sum_probs=94.4
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
++|+|+|+|||||||+|+.|++.||+.|+++++++++.+..+++++..+..++..|.++|++++..++.+++.+.++..|
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999998887889
Q ss_pred EEEeCCCCCHHHHHhccccc
Q 032438 113 FILDGFPRTEVQAQKVSPSS 132 (141)
Q Consensus 113 ~IldG~P~~~~q~~~l~~~~ 132 (141)
||||||||+.+|++.|++.+
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~ 101 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALL 101 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 99999999999999987643
No 14
>PRK14531 adenylate kinase; Provisional
Probab=99.90 E-value=1.1e-23 Score=153.86 Aligned_cols=98 Identities=48% Similarity=0.816 Sum_probs=90.8
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
.+|+|+|+|||||||+++.|+++||+.|++++++++.++...++.+..+..++..|..+|++++..++.+++.+. ...|
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~-~~~g 81 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL-NSGG 81 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-cCCc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999764 3579
Q ss_pred EEEeCCCCCHHHHHhcccc
Q 032438 113 FILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 113 ~IldG~P~~~~q~~~l~~~ 131 (141)
||||||||+..|++.+++.
T Consensus 82 ~ilDGfpr~~~q~~~~~~~ 100 (183)
T PRK14531 82 WLLDGFPRTVAQAEALEPL 100 (183)
T ss_pred EEEeCCCCCHHHHHHHHHH
Confidence 9999999999999987653
No 15
>PRK02496 adk adenylate kinase; Provisional
Probab=99.90 E-value=2.2e-23 Score=151.93 Aligned_cols=99 Identities=48% Similarity=0.883 Sum_probs=93.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
.+|+|+|+|||||||+++.|+++||+.++++++++++.+..+++.+..+..++.+|..+|++++.+++.+++.+.++..|
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence 57999999999999999999999999999999999999988899999999999999999999999999999988887889
Q ss_pred EEEeCCCCCHHHHHhcccc
Q 032438 113 FILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 113 ~IldG~P~~~~q~~~l~~~ 131 (141)
|||||||++..|++.+++.
T Consensus 82 ~vldGfPr~~~q~~~l~~~ 100 (184)
T PRK02496 82 WILDGFPRKVTQAAFLDEL 100 (184)
T ss_pred EEEeCCCCCHHHHHHHHHH
Confidence 9999999999999888653
No 16
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.90 E-value=2e-23 Score=151.61 Aligned_cols=97 Identities=31% Similarity=0.609 Sum_probs=90.2
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCeE
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g~ 113 (141)
.|+|+|+|||||||+|+.|+++||+.|+++++++++++..+++.+..++.++.+|..+|++++.+++.+++.... ..+|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~ 79 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKF 79 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcE
Confidence 489999999999999999999999999999999999998888899999999999999999999999999998765 6899
Q ss_pred EEeCCCCCHHHHHhcccc
Q 032438 114 ILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 114 IldG~P~~~~q~~~l~~~ 131 (141)
||||||++..|++.+.+.
T Consensus 80 vlDg~p~~~~q~~~~~~~ 97 (183)
T TIGR01359 80 LIDGFPRNEENLEAWEKL 97 (183)
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 999999999999887654
No 17
>PLN02200 adenylate kinase family protein
Probab=99.88 E-value=2.5e-22 Score=152.14 Aligned_cols=101 Identities=31% Similarity=0.564 Sum_probs=92.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~ 110 (141)
+|.+|+|+|+|||||||+|+.|+++||+.|++.++++++++...++.+..+..++..|..+|++++..++.+++...+ .
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~-~ 120 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD-N 120 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-C
Confidence 467899999999999999999999999999999999999999888999999999999999999999999999997654 4
Q ss_pred CeEEEeCCCCCHHHHHhccccc
Q 032438 111 KGFILDGFPRTEVQAQKVSPSS 132 (141)
Q Consensus 111 ~g~IldG~P~~~~q~~~l~~~~ 132 (141)
.+|||||||++..|+..|.+.+
T Consensus 121 ~~~ILDG~Prt~~q~~~l~~~~ 142 (234)
T PLN02200 121 NKFLIDGFPRTEENRIAFERII 142 (234)
T ss_pred CeEEecCCcccHHHHHHHHHHh
Confidence 6899999999999999887643
No 18
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.88 E-value=2.7e-22 Score=146.49 Aligned_cols=99 Identities=53% Similarity=0.921 Sum_probs=92.7
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCeE
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g~ 113 (141)
+|+|+|+|||||||+|+.|+++||+.++++++++++.....++.+..+..++.+|..+|++++.+++..++.+.....+|
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 58999999999999999999999999999999999999888889999999999999999999999999999876666899
Q ss_pred EEeCCCCCHHHHHhccccc
Q 032438 114 ILDGFPRTEVQAQKVSPSS 132 (141)
Q Consensus 114 IldG~P~~~~q~~~l~~~~ 132 (141)
|+||||++..|++.|++..
T Consensus 81 vldg~Pr~~~q~~~l~~~~ 99 (194)
T cd01428 81 ILDGFPRTVDQAEALDELL 99 (194)
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 9999999999999998755
No 19
>PRK14527 adenylate kinase; Provisional
Probab=99.88 E-value=5.1e-22 Score=145.76 Aligned_cols=102 Identities=41% Similarity=0.669 Sum_probs=93.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCC
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~ 108 (141)
..+++.|+|+|+|||||||+|+.|+++||+.+++.+++++.+...+++++..+..++.+|..+|++++..++.+++.+.+
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~ 82 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME 82 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 35678999999999999999999999999999999999999998888999999999999999999999999999998766
Q ss_pred CCCeEEEeCCCCCHHHHHhcccc
Q 032438 109 CQKGFILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 109 ~~~g~IldG~P~~~~q~~~l~~~ 131 (141)
+ .+|||||||++..|++.++..
T Consensus 83 ~-~~~VlDGfpr~~~q~~~~~~~ 104 (191)
T PRK14527 83 P-VRVIFDGFPRTLAQAEALDRL 104 (191)
T ss_pred C-CcEEEcCCCCCHHHHHHHHHH
Confidence 5 589999999999999877653
No 20
>PRK14530 adenylate kinase; Provisional
Probab=99.84 E-value=1.6e-20 Score=140.27 Aligned_cols=94 Identities=44% Similarity=0.736 Sum_probs=82.2
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH-----HccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCC
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV-----AAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~-----~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~ 107 (141)
++|+|+|+|||||||+++.|+++||+.|+++++++++.. ..++..+. ...++..|..+|+++...++...+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~~ 82 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSDA 82 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Confidence 489999999999999999999999999999999999987 33344454 677889999999999999999988653
Q ss_pred CCCCeEEEeCCCCCHHHHHhccc
Q 032438 108 SCQKGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 108 ~~~~g~IldG~P~~~~q~~~l~~ 130 (141)
.|||+||||++..|++.|++
T Consensus 83 ---~~~IldG~pr~~~q~~~l~~ 102 (215)
T PRK14530 83 ---DGFVLDGYPRNLEQAEYLES 102 (215)
T ss_pred ---CCEEEcCCCCCHHHHHHHHH
Confidence 59999999999999998865
No 21
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.82 E-value=2.7e-20 Score=139.93 Aligned_cols=101 Identities=50% Similarity=0.904 Sum_probs=95.2
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCC
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~ 109 (141)
+++.+.+++|+||+||+|+|..+++.|++.|+++++++++.+...++.+..++.++..|.++||+++..++..++....+
T Consensus 13 ~~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~ 92 (235)
T KOG3078|consen 13 KKGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRC 92 (235)
T ss_pred ccceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccccc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999977778888778
Q ss_pred CCeEEEeCCCCCHHHHHhccc
Q 032438 110 QKGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 110 ~~g~IldG~P~~~~q~~~l~~ 130 (141)
+.||++|||||+..|++.+.+
T Consensus 93 ~~~~ildg~Prt~~qa~~l~~ 113 (235)
T KOG3078|consen 93 QKGFILDGFPRTVQQAEELLD 113 (235)
T ss_pred ccccccCCCCcchHHHHHHHH
Confidence 999999999999999998665
No 22
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.82 E-value=1.5e-19 Score=131.15 Aligned_cols=102 Identities=39% Similarity=0.665 Sum_probs=89.8
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCC-CC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP-SC 109 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~-~~ 109 (141)
+.+.|+|+|+|||||||+++.|+++||+.+++.+++++......++.++.+..++++|..+|++.+.+.+..++... ..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT 81 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Confidence 34689999999999999999999999999999999999987777778888999999999999999999988888653 34
Q ss_pred CCeEEEeCCCCCHHHHHhccccc
Q 032438 110 QKGFILDGFPRTEVQAQKVSPSS 132 (141)
Q Consensus 110 ~~g~IldG~P~~~~q~~~l~~~~ 132 (141)
..+||+||||++..|++.+.+.+
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~~~ 104 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFERRI 104 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC
Confidence 67999999999999999886544
No 23
>PLN02842 nucleotide kinase
Probab=99.81 E-value=8.8e-20 Score=150.28 Aligned_cols=95 Identities=42% Similarity=0.778 Sum_probs=89.2
Q ss_pred EEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCC-CCCeEE
Q 032438 36 ILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKGFI 114 (141)
Q Consensus 36 ~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~-~~~g~I 114 (141)
.|+|+|||||||+|+.|+++|++.|++++++++.++..++++|..+++++.+|..+|++++..++..++...+ ...|||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 3799999999999999999999999999999999999999999999999999999999999999999998765 367999
Q ss_pred EeCCCCCHHHHHhccc
Q 032438 115 LDGFPRTEVQAQKVSP 130 (141)
Q Consensus 115 ldG~P~~~~q~~~l~~ 130 (141)
||||||+..|++.|++
T Consensus 81 LDGfPRt~~Qa~~Le~ 96 (505)
T PLN02842 81 LDGYPRSFAQAQSLEK 96 (505)
T ss_pred EeCCCCcHHHHHHHHh
Confidence 9999999999998865
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.42 E-value=1.5e-12 Score=94.58 Aligned_cols=94 Identities=26% Similarity=0.346 Sum_probs=65.5
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHc-cCc-----chHHHHHHhhcCCcchHHHHHHHHHHHhcC
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTP-----LGIKAKEAMDKGELVSDDLVVGIIDEAMKK 106 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~-~~~-----~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~ 106 (141)
.+|+|+|+|||||||+++ +++++|+.+++++|++++.+.. +.+ ++.......+ . +..+.+..++...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~-~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--E-LGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--H-HChHHHHHHHHHHHHh
Confidence 478999999999999987 7899999999999999998743 221 3443333332 1 2223444555555544
Q ss_pred CCCCCeEEEeCCCCCHHHHHhccccc
Q 032438 107 PSCQKGFILDGFPRTEVQAQKVSPSS 132 (141)
Q Consensus 107 ~~~~~g~IldG~P~~~~q~~~l~~~~ 132 (141)
.....+|+||+ ++..|.+.+.+.+
T Consensus 78 -~~~~~vvidg~-r~~~e~~~~~~~~ 101 (184)
T PRK01184 78 -KGDEVVVIDGV-RGDAEVEYFRKEF 101 (184)
T ss_pred -cCCCcEEEeCC-CCHHHHHHHHHhC
Confidence 23468999999 7888887776554
No 25
>PRK08356 hypothetical protein; Provisional
Probab=99.40 E-value=3.8e-13 Score=99.07 Aligned_cols=95 Identities=18% Similarity=0.393 Sum_probs=69.3
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHcc----C---cchHH----HHHHhhcCCcchH----HH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----T---PLGIK----AKEAMDKGELVSD----DL 95 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~----~---~~g~~----i~~~l~~g~~ip~----~~ 95 (141)
+.+.|+|+|||||||||+|+.|+ ++|+.+++.++.++...+.. . ..+.. ...+++.|..+|+ ++
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 34689999999999999999996 58999999998765433321 1 11111 2466777777775 66
Q ss_pred HHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHhccc
Q 032438 96 VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 96 ~~~ll~~~l~~~~~~~g~IldG~P~~~~q~~~l~~ 130 (141)
+.+++.+++.. + ..|++||| |+..|++.|.+
T Consensus 83 ~~~~~~~~~~~--~-~~ividG~-r~~~q~~~l~~ 113 (195)
T PRK08356 83 LIRLAVDKKRN--C-KNIAIDGV-RSRGEVEAIKR 113 (195)
T ss_pred HHHHHHHHhcc--C-CeEEEcCc-CCHHHHHHHHh
Confidence 66777777732 2 35999999 99999988866
No 26
>PRK08118 topology modulation protein; Reviewed
Probab=99.38 E-value=1.4e-12 Score=94.19 Aligned_cols=70 Identities=24% Similarity=0.386 Sum_probs=53.4
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
.+|+|+|+|||||||+|+.|++.+++.++++|++.... ....++++...+++.+.+.+ .+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~~----~~ 61 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVKE----DE 61 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhcC----CC
Confidence 47999999999999999999999999999999998641 12345555555666665543 47
Q ss_pred EEEeC-CCCCH
Q 032438 113 FILDG-FPRTE 122 (141)
Q Consensus 113 ~IldG-~P~~~ 122 (141)
||+|| |+++.
T Consensus 62 wVidG~~~~~~ 72 (167)
T PRK08118 62 WIIDGNYGGTM 72 (167)
T ss_pred EEEeCCcchHH
Confidence 99999 55543
No 27
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.23 E-value=1.9e-11 Score=82.80 Aligned_cols=34 Identities=29% Similarity=0.591 Sum_probs=32.3
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll 67 (141)
+|+|.|+|||||||+|+.|+++||+.++++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5899999999999999999999999999999954
No 28
>PRK03839 putative kinase; Provisional
Probab=99.23 E-value=2.1e-11 Score=88.44 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=34.4
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 69 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~ 69 (141)
+|+|+|+|||||||+++.||+++++.++++++++++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~ 37 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALK 37 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhh
Confidence 699999999999999999999999999999999875
No 29
>PRK06217 hypothetical protein; Validated
Probab=99.23 E-value=1.1e-11 Score=90.42 Aligned_cols=75 Identities=20% Similarity=0.349 Sum_probs=53.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
.+|+|+|+|||||||+++.|++++|+.++++|++.+.. .+.+. +...+++.....+.+.+.. ..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~---~~~ 66 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPF----------TTKRPPEERLRLLLEDLRP---REG 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCc----------cccCCHHHHHHHHHHHHhc---CCC
Confidence 47999999999999999999999999999999998742 11111 1123444444555555532 358
Q ss_pred EEEeCCCCCH
Q 032438 113 FILDGFPRTE 122 (141)
Q Consensus 113 ~IldG~P~~~ 122 (141)
|||||+|...
T Consensus 67 ~vi~G~~~~~ 76 (183)
T PRK06217 67 WVLSGSALGW 76 (183)
T ss_pred EEEEccHHHH
Confidence 9999998653
No 30
>PRK13949 shikimate kinase; Provisional
Probab=99.19 E-value=1.1e-10 Score=84.48 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=61.3
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhh-cCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~-~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
+|+|+|+|||||||+++.||+.+++.++++|+++.+... ..+.+.++ .|.....+...+++.+ +... .+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~------~~~~~~~~~~g~~~fr~~e~~~l~~-l~~~---~~ 72 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH------KTVGDIFAERGEAVFRELERNMLHE-VAEF---ED 72 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC------ccHHHHHHHhCHHHHHHHHHHHHHH-HHhC---CC
Confidence 799999999999999999999999999999999876532 22333332 3444444555555555 4322 36
Q ss_pred EEEe---CCCCCHHHHHhccc
Q 032438 113 FILD---GFPRTEVQAQKVSP 130 (141)
Q Consensus 113 ~Ild---G~P~~~~q~~~l~~ 130 (141)
||+. |+|...++.+.+.+
T Consensus 73 ~vis~Ggg~~~~~~~~~~l~~ 93 (169)
T PRK13949 73 VVISTGGGAPCFFDNMELMNA 93 (169)
T ss_pred EEEEcCCcccCCHHHHHHHHh
Confidence 6664 57878777777754
No 31
>PRK07261 topology modulation protein; Provisional
Probab=99.07 E-value=2.2e-10 Score=82.96 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=32.8
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLR 68 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~ 68 (141)
.+|+|+|+|||||||+|+.|++.+++.+++.|.+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 379999999999999999999999999999987753
No 32
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.06 E-value=1.2e-09 Score=78.31 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=38.1
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHc
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA 73 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~ 73 (141)
.+|.|.|+|||||||+++.||++||+.++|.+++.|+..+.
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e 41 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARE 41 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH
Confidence 37899999999999999999999999999999999997764
No 33
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.06 E-value=5e-10 Score=87.03 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=57.8
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh-CccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCC
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~-~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~ 110 (141)
+..|++.|+|||||||+|+.|++++ +..+++.|++........ ..+.. .+...+...-.+.....+...+. ..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~---~g 75 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHG-EWGEY--KFTKEKEDLVTKAQEAAALAALK---SG 75 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCC-ccccc--ccChHHHHHHHHHHHHHHHHHHH---cC
Confidence 3578899999999999999999999 899999988655432221 11100 00000100111233333444443 23
Q ss_pred CeEEEeCCCCCHHHHHhccc
Q 032438 111 KGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 111 ~g~IldG~P~~~~q~~~l~~ 130 (141)
..+|+|+++.+..+.+.+.+
T Consensus 76 ~~vIid~~~~~~~~~~~~~~ 95 (300)
T PHA02530 76 KSVIISDTNLNPERRRKWKE 95 (300)
T ss_pred CeEEEeCCCCCHHHHHHHHH
Confidence 67999999998887776543
No 34
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.00 E-value=6.7e-10 Score=82.05 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=48.0
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 86 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~ 86 (141)
.+|.|+|++||||||+++.|++.||+.++|.|++.++..+.+++....+.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg 55 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYG 55 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhC
Confidence 379999999999999999999999999999999999998888777777766653
No 35
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.99 E-value=5.8e-10 Score=82.63 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=41.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCc
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP 76 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~ 76 (141)
.+..|+|.|.|||||||+|+.|++++|+.++..+|++++.+.....
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~ 47 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVD 47 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcC
Confidence 4678999999999999999999999999999999999998875433
No 36
>PRK04182 cytidylate kinase; Provisional
Probab=98.99 E-value=4.7e-09 Score=75.32 Aligned_cols=39 Identities=31% Similarity=0.658 Sum_probs=36.5
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~ 72 (141)
+|+|+|+|||||||+++.|++++|+.+++.+++++....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~ 40 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAK 40 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHH
Confidence 799999999999999999999999999999999988664
No 37
>PRK04040 adenylate kinase; Provisional
Probab=98.97 E-value=2.8e-09 Score=78.36 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=38.4
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh--CccccchHHHHHHHHHc
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAA 73 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~--~~~~is~~~ll~~~~~~ 73 (141)
++.|+|+|.|||||||+++.|++++ ++.+++.++++++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~ 45 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKE 45 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHH
Confidence 5789999999999999999999999 89999999999887653
No 38
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.95 E-value=4.5e-09 Score=74.95 Aligned_cols=39 Identities=36% Similarity=0.670 Sum_probs=36.2
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~ 72 (141)
+|.|+|++||||||+|+.|++++|+.+++.+++++....
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~ 40 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAA 40 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHH
Confidence 689999999999999999999999999999998887654
No 39
>PRK13948 shikimate kinase; Provisional
Probab=98.93 E-value=4.9e-09 Score=76.78 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=39.1
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
.+++..|+++|++||||||+++.||+++|..++++|.++.+..
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~ 49 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT 49 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH
Confidence 4567899999999999999999999999999999999887753
No 40
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.91 E-value=3.7e-09 Score=76.55 Aligned_cols=69 Identities=20% Similarity=0.350 Sum_probs=51.5
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhc-CCcchHHHHHHHHHHHhcC
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKK 106 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~-g~~ip~~~~~~ll~~~l~~ 106 (141)
...|+++|++||||||+++.||+.+++.++++|.++.+.. +..+.+.++. |+.--.+.-.+++.+.+..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~------g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~ 71 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT------GMSIAEIFEEEGEEGFRRLETEVLKELLEE 71 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH------CcCHHHHHHHHhHHHHHHHHHHHHHHHhhc
Confidence 3579999999999999999999999999999999998863 3445555554 4444444445555555544
No 41
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.89 E-value=9.1e-10 Score=77.99 Aligned_cols=40 Identities=20% Similarity=0.447 Sum_probs=37.4
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
-.++|+|+|-||+||||+|+.||+.+|+.+|.+++++++.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn 45 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN 45 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhh
Confidence 3569999999999999999999999999999999999875
No 42
>PRK13947 shikimate kinase; Provisional
Probab=98.89 E-value=1e-08 Score=73.36 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=34.8
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
+|+|+|+|||||||+++.||+.+|+.+++.+++++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~ 39 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM 39 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh
Confidence 6999999999999999999999999999999988765
No 43
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.89 E-value=2.7e-09 Score=76.07 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=37.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
+++..|+|+|+|||||||+|+.||+++|+.+++.+++++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~ 42 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEAR 42 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHH
Confidence 35679999999999999999999999999999999988764
No 44
>PRK00625 shikimate kinase; Provisional
Probab=98.87 E-value=3e-09 Score=77.34 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=35.7
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
.|+|+|+|||||||+++.||+++++.++++|+++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~ 39 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh
Confidence 69999999999999999999999999999999998753
No 45
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.85 E-value=3.4e-09 Score=77.01 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=44.9
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 86 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~ 86 (141)
+|.|+|+|||||||+++.|++ +|+.+++.|++.++..+.+......+...+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg 52 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFG 52 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcC
Confidence 488999999999999999998 8999999999999988877766666666553
No 46
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.84 E-value=1.3e-08 Score=70.50 Aligned_cols=39 Identities=28% Similarity=0.488 Sum_probs=35.1
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~ 72 (141)
.|++.|+|||||||+++.|++.++..+++.|++......
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~ 39 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAG 39 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcc
Confidence 488999999999999999999999999999998876543
No 47
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.83 E-value=3.2e-09 Score=73.71 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=32.0
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 69 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~ 69 (141)
+|+|.|+|||||||+|+.|++++|+++++.+.+..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e 36 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTE 36 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHH
Confidence 489999999999999999999999999999855443
No 48
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.81 E-value=7e-09 Score=76.42 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=45.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 86 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~ 86 (141)
.+|.|+|++||||||+++.|++ +|+.+++.|++.++....+++....+.+.+.
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg 55 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFG 55 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhC
Confidence 4799999999999999999998 9999999999999988777666666655543
No 49
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.77 E-value=3.2e-08 Score=73.54 Aligned_cols=53 Identities=23% Similarity=0.209 Sum_probs=43.9
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAM 85 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l 85 (141)
...|-|+|.|||||||+++.+++ +|++.+++|+..++..+++.+....+...+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~f 54 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERF 54 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHc
Confidence 35789999999999999999998 999999999999988877655544444433
No 50
>PRK08233 hypothetical protein; Provisional
Probab=98.75 E-value=8.4e-09 Score=74.23 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
++..|+|.|+|||||||+|+.|++.++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999999986
No 51
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.72 E-value=3.4e-08 Score=73.21 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=47.8
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCC
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE 89 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~ 89 (141)
..|.|+|++||||||+++.|++ +|+.+++.|++.++.+..+.+....+.+.+..+-
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~ 57 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDI 57 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccc
Confidence 3689999999999999999987 7999999999999998887777777766665543
No 52
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.72 E-value=3.3e-08 Score=69.30 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=34.9
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
.|+|+|+|||||||+++.|++.+|+.+++.++++....
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~ 38 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRA 38 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHc
Confidence 38999999999999999999999999999999987653
No 53
>PRK13946 shikimate kinase; Provisional
Probab=98.69 E-value=7e-08 Score=70.41 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=36.4
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
.+..|+++|+|||||||+++.||+++|+.+++.|.++...
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~ 48 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERA 48 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHH
Confidence 4568999999999999999999999999999999877655
No 54
>PLN02199 shikimate kinase
Probab=98.69 E-value=1e-07 Score=74.54 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=51.1
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhc-CCcchHHHHHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEA 103 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~-g~~ip~~~~~~ll~~~ 103 (141)
..++..|+|+|++||||||+++.||+.+|+.+++.|.++.+... |..+.++++. |+..-.+.-.++|.+-
T Consensus 99 ~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L 169 (303)
T PLN02199 99 YLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKL 169 (303)
T ss_pred HcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 45577999999999999999999999999999999999998632 2234444433 4444444445555554
No 55
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.69 E-value=3.2e-08 Score=72.29 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=43.0
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEA 84 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~ 84 (141)
+|.|+|++||||||+++.|++.+++.+++.|++.++....+.+....+.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~ 51 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDH 51 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHH
Confidence 488999999999999999999978999999999999888766554444433
No 56
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.66 E-value=8.9e-08 Score=73.46 Aligned_cols=103 Identities=20% Similarity=0.345 Sum_probs=55.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh---C------ccccchHHHHHHHHHccCcchHHHHHHhh---cCCcchHHH---
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C------LCHLATGDMLRAAVAAKTPLGIKAKEAMD---KGELVSDDL--- 95 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~---~------~~~is~~~ll~~~~~~~~~~g~~i~~~l~---~g~~ip~~~--- 95 (141)
.+..++|.||||+||||+|+.+++.+ + +..++..+++...+.. ....+.+.++ .|-.+-|++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~---~~~~~~~~~~~a~~~VL~IDE~~~L 117 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGH---TAQKTREVIKKALGGVLFIDEAYSL 117 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccc---hHHHHHHHHHhccCCEEEEechhhh
Confidence 35689999999999999999999764 2 2334555554432211 0111112211 122222221
Q ss_pred -----------HHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHhccccccccc
Q 032438 96 -----------VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKVSPSSTCRL 136 (141)
Q Consensus 96 -----------~~~ll~~~l~~~~~~~g~IldG~P~~~~q~~~l~~~~~~~~ 136 (141)
..+.+...+.+.....-+|+.|+|........+...+..|+
T Consensus 118 ~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf 169 (261)
T TIGR02881 118 ARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF 169 (261)
T ss_pred ccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc
Confidence 22334444544332335678899877655555555554444
No 57
>CHL00181 cbbX CbbX; Provisional
Probab=98.66 E-value=1.3e-07 Score=73.84 Aligned_cols=106 Identities=22% Similarity=0.323 Sum_probs=58.7
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhC---------ccccchHHHHHHHHHccCc-chHHHHHHhhcCCcchHH------
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYC---------LCHLATGDMLRAAVAAKTP-LGIKAKEAMDKGELVSDD------ 94 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~---------~~~is~~~ll~~~~~~~~~-~g~~i~~~l~~g~~ip~~------ 94 (141)
++..++|.||||+||||+|+.+++.+. +..++.++++...+..... ....++.. ..|.++-|+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~ 136 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYK 136 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHc-cCCEEEEEccchhcc
Confidence 456799999999999999999988651 4567777777654321110 11111111 122222222
Q ss_pred ---------HHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHhcccccccccc
Q 032438 95 ---------LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKVSPSSTCRLA 137 (141)
Q Consensus 95 ---------~~~~ll~~~l~~~~~~~g~IldG~P~~~~q~~~l~~~~~~~~~ 137 (141)
.....|...|.+....-.+|+-|++.....+..+...+..|++
T Consensus 137 ~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~ 188 (287)
T CHL00181 137 PDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIA 188 (287)
T ss_pred CCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCC
Confidence 2334455556543333467888987655544444444444443
No 58
>PLN02422 dephospho-CoA kinase
Probab=98.65 E-value=1e-07 Score=72.30 Aligned_cols=51 Identities=20% Similarity=0.132 Sum_probs=43.4
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAM 85 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l 85 (141)
.|.|+|++||||||+++.|+ ++|+.+++.|++.++..+.+++....+.+.+
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~F 53 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAF 53 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHh
Confidence 68999999999999999998 6899999999999999887765555555443
No 59
>PRK06547 hypothetical protein; Provisional
Probab=98.62 E-value=7.5e-08 Score=69.91 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=36.5
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 69 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~ 69 (141)
..++..|.|.|++||||||+++.|++.+++..++++++...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~ 52 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPG 52 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecc
Confidence 45677999999999999999999999999999999988753
No 60
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.61 E-value=2.8e-07 Score=72.53 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=38.4
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
..+++..|+|+|+|||||||+++.|++++|+.+++++..+.+.
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~ 171 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIERE 171 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHH
Confidence 3566789999999999999999999999999999999877654
No 61
>PRK06762 hypothetical protein; Provisional
Probab=98.60 E-value=6.7e-08 Score=68.94 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=33.0
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh--CccccchHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAA 70 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~--~~~~is~~~ll~~~ 70 (141)
|..|+|+|+|||||||+|+.|++.+ ++.+++.|.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l 42 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM 42 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence 5689999999999999999999998 57778877766543
No 62
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.58 E-value=1.3e-07 Score=72.25 Aligned_cols=53 Identities=21% Similarity=0.171 Sum_probs=44.7
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAM 85 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l 85 (141)
.+|-|+|.+||||||+++.|.+++|+++++.|.+.++..+++.+....+.+.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~F 54 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARW 54 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHh
Confidence 37899999999999999999998999999999999998887765545554433
No 63
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.56 E-value=1.2e-07 Score=70.72 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=39.3
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHc
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA 73 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~ 73 (141)
.|..|.|+|++||||||+++.|++++|+.+++.|.+.++....
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~ 47 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK 47 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc
Confidence 4578999999999999999999999999999999999988754
No 64
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.56 E-value=8.5e-08 Score=69.40 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=34.6
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
++|+|+|.||+||||+|+.|+ ++|+.++++.+++++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~ 37 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN 37 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc
Confidence 479999999999999999999 9999999999999875
No 65
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.56 E-value=4.2e-07 Score=67.97 Aligned_cols=38 Identities=37% Similarity=0.555 Sum_probs=36.6
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
++|-|-||.||||||+|+.||++||+.+++.+-+.|..
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 78999999999999999999999999999999999985
No 66
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.56 E-value=8.9e-08 Score=68.62 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=35.0
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
..|+|+|+|||||||+++.||+++|+.+++.|.++...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~ 40 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQST 40 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHH
Confidence 36899999999999999999999999999999998765
No 67
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.53 E-value=2.8e-07 Score=67.37 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=43.7
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 86 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~ 86 (141)
.|-|+|+.||||||+++.|++ +|+.+++.|++.++....+.+....+.+.+.
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG 53 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFG 53 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHG
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcC
Confidence 688999999999999999988 8999999999999988877766666655443
No 68
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.53 E-value=1.8e-07 Score=78.77 Aligned_cols=67 Identities=12% Similarity=0.243 Sum_probs=50.6
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHh-hcCCcchHHHHHHHHHHHh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAM-DKGELVSDDLVVGIIDEAM 104 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l-~~g~~ip~~~~~~ll~~~l 104 (141)
.++|+++|+|||||||+++.||+++|..++++|+.+.+.. |..+.+++ +.|+.-..+.-.+++++-+
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~ 73 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADML 73 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999988763 44455544 3355444555555555544
No 69
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.53 E-value=2.2e-07 Score=77.39 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=34.9
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
+|+|+|+|||||||+++.||+++|+.++++|+++.+.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~ 38 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR 38 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH
Confidence 6999999999999999999999999999999998764
No 70
>PRK13973 thymidylate kinase; Provisional
Probab=98.52 E-value=7.6e-07 Score=66.45 Aligned_cols=73 Identities=21% Similarity=0.313 Sum_probs=49.2
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh---Cccccch--------HHHHHHHHHcc--CcchHHHHHHhhcCCcchHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY---CLCHLAT--------GDMLRAAVAAK--TPLGIKAKEAMDKGELVSDDLVVG 98 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~---~~~~is~--------~~ll~~~~~~~--~~~g~~i~~~l~~g~~ip~~~~~~ 98 (141)
+..|+|.|.+||||||+++.|++.+ |..++.+ ++++++.+... ...+......+-.+ ...+.+.+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~~ 80 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVEE 80 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHHH
Confidence 5789999999999999999999999 7777765 88888876532 22233333333322 23345556
Q ss_pred HHHHHhcC
Q 032438 99 IIDEAMKK 106 (141)
Q Consensus 99 ll~~~l~~ 106 (141)
++...+.+
T Consensus 81 ~i~~~l~~ 88 (213)
T PRK13973 81 VIRPALAR 88 (213)
T ss_pred HHHHHHHC
Confidence 66667754
No 71
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.52 E-value=3.4e-07 Score=71.33 Aligned_cols=105 Identities=22% Similarity=0.294 Sum_probs=57.3
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh---------CccccchHHHHHHHHHccCc--chHHHHHHhhcCCcchHHH----
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY---------CLCHLATGDMLRAAVAAKTP--LGIKAKEAMDKGELVSDDL---- 95 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~---------~~~~is~~~ll~~~~~~~~~--~g~~i~~~l~~g~~ip~~~---- 95 (141)
++..++|+||||+|||++|+.+++.+ .+..++.++++..... .+. ....++.. ..|.++-|++
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g-~~~~~~~~~~~~a-~~gvL~iDEi~~L~ 134 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIG-HTAPKTKEILKRA-MGGVLFIDEAYYLY 134 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcc-cchHHHHHHHHHc-cCcEEEEechhhhc
Confidence 44589999999999999998888755 2455677777654321 111 11111111 1233333322
Q ss_pred -----------HHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHhcccccccccc
Q 032438 96 -----------VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKVSPSSTCRLA 137 (141)
Q Consensus 96 -----------~~~ll~~~l~~~~~~~g~IldG~P~~~~q~~~l~~~~~~~~~ 137 (141)
..+.|...|.......-+|+.|++.....+..+...+..|++
T Consensus 135 ~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~ 187 (284)
T TIGR02880 135 RPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVA 187 (284)
T ss_pred cCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCC
Confidence 223445556544334467788887655554444444444443
No 72
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.48 E-value=9.4e-08 Score=67.04 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=32.8
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 69 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~ 69 (141)
.|+|.|+|||||||+|+.|++.++..+++.|++...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence 378999999999999999999999999999888764
No 73
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.48 E-value=1.5e-07 Score=68.05 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=35.0
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
+.+|+|+|++||||||+++.|++.+++.+++.|..+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~ 42 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR 42 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHH
Confidence 457999999999999999999999999999999876654
No 74
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.48 E-value=2.3e-07 Score=57.43 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhhHHHHHHhhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~ 56 (141)
.|+|.|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999884
No 75
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.46 E-value=5.8e-07 Score=67.54 Aligned_cols=38 Identities=29% Similarity=0.495 Sum_probs=35.5
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
..|.|.||+||||||+++.|++++++.+++.+++.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 57999999999999999999999999999999998765
No 76
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.44 E-value=5.8e-07 Score=73.08 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=41.2
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKE 83 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~ 83 (141)
+|.|+|++||||||+++.|++ +|+.+++.|++.++..+.+......+.+
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~ 51 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVA 51 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHH
Confidence 699999999999999999987 8999999999999988766544333433
No 77
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.44 E-value=2.3e-07 Score=67.25 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=29.9
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhC--ccccchHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAA 70 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~--~~~is~~~ll~~~ 70 (141)
.+|+|+|+||||||++|..++..++ +.+++.....+++
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e 41 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDE 41 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHH
Confidence 4799999999999999999999986 5566665444443
No 78
>PRK12338 hypothetical protein; Provisional
Probab=98.44 E-value=2.7e-07 Score=72.90 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=38.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~ 72 (141)
+|..|+|.|+|||||||+|+.||+++|+.++..+|.+++.+.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~ 44 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVR 44 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHc
Confidence 578999999999999999999999999999988899988765
No 79
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.43 E-value=4.5e-07 Score=67.53 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=38.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccC
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT 75 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~ 75 (141)
+.+..|.|+|++||||||+++.|++ +|+.+++.|.+.++....+.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~ 47 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDP 47 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcH
Confidence 3457899999999999999999986 89999999999887765443
No 80
>PRK06696 uridine kinase; Validated
Probab=98.43 E-value=3.5e-07 Score=68.60 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=40.5
Q ss_pred hHHHHHHHHhhh-cCCCCeEEEEECCCCCChhhHHHHHHhhh---Cc--cccchHHHHHH
Q 032438 16 DLMTELLRRMKC-ASKPDKRLILVGPPGSGKGTQSPIIKDEY---CL--CHLATGDMLRA 69 (141)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~I~i~G~pgsGKstla~~La~~~---~~--~~is~~~ll~~ 69 (141)
+++.++..++.- ....+..|.|.|+|||||||+|+.|++.+ |. .++++|++...
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 345566555542 35568899999999999999999999988 44 44568877643
No 81
>PRK13975 thymidylate kinase; Provisional
Probab=98.42 E-value=9.8e-07 Score=64.40 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=24.4
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
..|+|.|++||||||+++.|+++++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999999984
No 82
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.41 E-value=3.9e-07 Score=68.75 Aligned_cols=39 Identities=38% Similarity=0.576 Sum_probs=36.4
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
+.+|.|.|+|||||||+++.|+++||+.+++.+.+.+..
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~ 42 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV 42 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence 468999999999999999999999999999999998764
No 83
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.40 E-value=1.4e-06 Score=66.35 Aligned_cols=32 Identities=34% Similarity=0.442 Sum_probs=25.9
Q ss_pred EEEECCCCCChhhHHHHHHhhh-----CccccchHHH
Q 032438 35 LILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDM 66 (141)
Q Consensus 35 I~i~G~pgsGKstla~~La~~~-----~~~~is~~~l 66 (141)
|+|+|+|||||||+|+.|++.+ ++.+++.+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7999999999999999999876 2455665444
No 84
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.39 E-value=1.6e-07 Score=66.77 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=30.7
Q ss_pred EEEECCCCCChhhHHHHHHhhhCccccchHHHH
Q 032438 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (141)
Q Consensus 35 I~i~G~pgsGKstla~~La~~~~~~~is~~~ll 67 (141)
|+++|+|||||||+++.|++.++..+++.+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcccc
Confidence 578999999999999999999999999999974
No 85
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.39 E-value=8.9e-07 Score=59.76 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEECCCCCChhhHHHHHHhhh
Q 032438 35 LILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 35 I~i~G~pgsGKstla~~La~~~ 56 (141)
|+|.|+|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 86
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.38 E-value=4.7e-07 Score=65.40 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=31.7
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCc--cccchHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRA 69 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~--~~is~~~ll~~ 69 (141)
+..|++.|+|||||||+++.|++.++. .+++.|++...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 468999999999999999999998754 45677777654
No 87
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.37 E-value=1.3e-06 Score=64.72 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=41.1
Q ss_pred EEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHh
Q 032438 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAM 85 (141)
Q Consensus 35 I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l 85 (141)
|.|+|++||||||+++.|++ +|+.+++.|++.++..+.+.+....+.+.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~f 51 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLL 51 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHh
Confidence 68999999999999999965 699999999999998877666555554433
No 88
>PRK13974 thymidylate kinase; Provisional
Probab=98.37 E-value=3e-07 Score=68.57 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=40.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccch--HHHHHHHHHccCcchHHHHHHhhc--CCcchHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVAAKTPLGIKAKEAMDK--GELVSDDLV 96 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~--~~ll~~~~~~~~~~g~~i~~~l~~--g~~ip~~~~ 96 (141)
++..|+|.|++||||||+++.|++.+....... .+.+......++++|+.+++++.. |...++...
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~ 71 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLA 71 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHH
Confidence 367899999999999999999998874211000 000000011346788888888853 334444433
No 89
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.37 E-value=2.3e-06 Score=73.73 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=37.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
++.++|.|.||+||||||+++.||+++|+.+++.+.+.+..
T Consensus 440 ~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 440 DRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred cCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 34669999999999999999999999999999999999875
No 90
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.34 E-value=3.6e-07 Score=61.95 Aligned_cols=33 Identities=24% Similarity=0.551 Sum_probs=28.1
Q ss_pred EEEECCCCCChhhHHHHHHhhhCcc--ccchHHHH
Q 032438 35 LILVGPPGSGKGTQSPIIKDEYCLC--HLATGDML 67 (141)
Q Consensus 35 I~i~G~pgsGKstla~~La~~~~~~--~is~~~ll 67 (141)
|+|+||||+|||++++.+++.++.. .++..++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence 6899999999999999999999854 46666666
No 91
>PLN02165 adenylate isopentenyltransferase
Probab=98.34 E-value=3.5e-07 Score=72.63 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=37.2
Q ss_pred hhcCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 26 ~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
...++++..|+|+||+|||||+++..||+.++..+++.|.+
T Consensus 37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred cccCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 34677888999999999999999999999999999999887
No 92
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.33 E-value=1.3e-06 Score=73.01 Aligned_cols=41 Identities=34% Similarity=0.505 Sum_probs=38.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
.++++|.|.||+||||||+++.|++++|+.+++.|.+.|..
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 46789999999999999999999999999999999999974
No 93
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.33 E-value=1.6e-06 Score=61.70 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=53.2
Q ss_pred CCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhc-CCcchHHHHHHHHHHHhcCCCCCCeEEEe--C
Q 032438 41 PGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQKGFILD--G 117 (141)
Q Consensus 41 pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~-g~~ip~~~~~~ll~~~l~~~~~~~g~Ild--G 117 (141)
|||||||+++.||+.+|..++++|+++.+. .|..+.+.+.. |..--.+...+++.+.+... ..+|-- |
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~------~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~---~~VIa~GGG 71 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEER------TGMSISEIFAEEGEEAFRELESEALRELLKEN---NCVIACGGG 71 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHH------HTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---SEEEEE-TT
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHH------hCCcHHHHHHcCChHHHHHHHHHHHHHHhccC---cEEEeCCCC
Confidence 799999999999999999999999999775 33344444432 33333445566666666543 233322 3
Q ss_pred CCCCHHHHHhcc
Q 032438 118 FPRTEVQAQKVS 129 (141)
Q Consensus 118 ~P~~~~q~~~l~ 129 (141)
.+...+..+.+.
T Consensus 72 ~~~~~~~~~~L~ 83 (158)
T PF01202_consen 72 IVLKEENRELLK 83 (158)
T ss_dssp GGGSHHHHHHHH
T ss_pred CcCcHHHHHHHH
Confidence 666666666665
No 94
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.28 E-value=9e-07 Score=63.78 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=31.5
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhC-----ccccchHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDM 66 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~l 66 (141)
...+|..|+|.|+|||||||+++.|++++. ..+++.+.+
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 356788999999999999999999998875 556654443
No 95
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=2.2e-06 Score=61.32 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=34.2
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 69 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~ 69 (141)
+-.|+++|.+||||||+++.|++++++.+++-||+--.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~ 49 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPP 49 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCH
Confidence 34899999999999999999999999999999988643
No 96
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.23 E-value=3.4e-07 Score=66.73 Aligned_cols=93 Identities=20% Similarity=0.197 Sum_probs=51.9
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh----CccccchHHHHHHHHHccCcc----hHHHHHHhhcCCcchHHH--------H
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY----CLCHLATGDMLRAAVAAKTPL----GIKAKEAMDKGELVSDDL--------V 96 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~----~~~~is~~~ll~~~~~~~~~~----g~~i~~~l~~g~~ip~~~--------~ 96 (141)
..|+|+||+||||+|++..|.+.+ ...+.....-.+.....+.+. ...+....+.|..+.... .
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~ 82 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS 82 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccC
Confidence 478999999999999999999885 222222222222111111111 234555555555544321 1
Q ss_pred HHHHHHHhcCCCCCCeEEEeCCCCCHHHHHhc
Q 032438 97 VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKV 128 (141)
Q Consensus 97 ~~ll~~~l~~~~~~~g~IldG~P~~~~q~~~l 128 (141)
...+...+.. .+.+|+|+.|....++...
T Consensus 83 ~~~i~~~~~~---~~~~ild~~~~~~~~l~~~ 111 (184)
T smart00072 83 KETIRQVAEQ---GKHCLLDIDPQGVKQLRKA 111 (184)
T ss_pred HHHHHHHHHc---CCeEEEEECHHHHHHHHHh
Confidence 2234444432 3678888888877777654
No 97
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.19 E-value=9.8e-07 Score=76.55 Aligned_cols=37 Identities=32% Similarity=0.457 Sum_probs=35.2
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
+|.|.|||||||||+++.||+++|+.+++.+.+.+..
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 7899999999999999999999999999999999875
No 98
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=8.4e-06 Score=66.74 Aligned_cols=93 Identities=22% Similarity=0.321 Sum_probs=53.6
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhC------ccccchHHHHHHHHHccCcchHHHHHHhhcCCc--chHHHHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL--VSDDLVVGIIDE 102 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~------~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~--ip~~~~~~ll~~ 102 (141)
++.+++|+||+||||||++..||..+. +..++.|. .+.... .+++.+.+.... .+.... .-+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt-~R~aA~------eQLk~yAe~lgvp~~~~~~~-~~l~~ 293 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN-YRIAAI------EQLKRYADTMGMPFYPVKDI-KKFKE 293 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc-hhhhHH------HHHHHHHHhcCCCeeehHHH-HHHHH
Confidence 356799999999999999999997652 33444443 333211 122232222111 111112 23344
Q ss_pred HhcCCCCCCeEEEe--CCC-CCHHHHHhccccc
Q 032438 103 AMKKPSCQKGFILD--GFP-RTEVQAQKVSPSS 132 (141)
Q Consensus 103 ~l~~~~~~~g~Ild--G~P-~~~~q~~~l~~~~ 132 (141)
.+.. .....+||| |++ ++..+++.+.+.+
T Consensus 294 ~l~~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~ 325 (432)
T PRK12724 294 TLAR-DGSELILIDTAGYSHRNLEQLERMQSFY 325 (432)
T ss_pred HHHh-CCCCEEEEeCCCCCccCHHHHHHHHHHH
Confidence 4433 233568999 884 8889998887644
No 99
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.18 E-value=1.5e-06 Score=64.40 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=33.2
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC---ccccchHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLR 68 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~---~~~is~~~ll~ 68 (141)
.+++.+|.|.|++||||||+++.|++.++ +.+++.|+...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 46789999999999999999999999883 45677776543
No 100
>PLN02924 thymidylate kinase
Probab=98.18 E-value=2.8e-06 Score=63.99 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=43.6
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~ 93 (141)
.++++..|+|.|..||||||+++.|++.++...+.+ ...++ -..++..|+.+++++..+..+..
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~ 75 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDD 75 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCH
Confidence 356678999999999999999999999986554443 11111 11245667777777766544433
No 101
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.16 E-value=3.2e-06 Score=66.37 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=34.8
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
.+.|..|+|.|++||||||+|..||+++|...+--.|.+++.+
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~ 131 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVM 131 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHH
Confidence 4568899999999999999999999999987543355666444
No 102
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.16 E-value=2.8e-06 Score=60.79 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=30.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLR 68 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~ 68 (141)
+|..|||+|.|||||||+|+.|.+++ .+.+++.|.+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 36789999999999999999999887 356677666554
No 103
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.15 E-value=3e-06 Score=74.75 Aligned_cols=38 Identities=32% Similarity=0.445 Sum_probs=36.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
..|.|.|||||||||+|+.||++|++.+++++.+.|..
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 38999999999999999999999999999999999986
No 104
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.14 E-value=3.6e-06 Score=70.67 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=35.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll 67 (141)
..++..|++.|+|||||||+|+.+++..|..+++.|++-
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg 404 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG 404 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH
Confidence 356789999999999999999999999999999999874
No 105
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.14 E-value=1.5e-06 Score=64.02 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=32.2
Q ss_pred EEEEECCCCCChhhHHHHHHhhh-CccccchHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRA 69 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~-~~~~is~~~ll~~ 69 (141)
.|.|.|+|||||||+|+.|++.+ ++.++++|++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 47899999999999999999998 6889999988764
No 106
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=98.14 E-value=5.7e-06 Score=62.07 Aligned_cols=85 Identities=16% Similarity=0.250 Sum_probs=52.5
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH-HHcc--CcchH---------HHHHHhhcCCcchHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA-VAAK--TPLGI---------KAKEAMDKGELVSDDLVVGII 100 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~-~~~~--~~~g~---------~i~~~l~~g~~ip~~~~~~ll 100 (141)
..++|.||+|+|||.+|-.||+++|.++|+.|.+.... +... .+... .....+..|. ++.+-..+.|
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L 80 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL 80 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence 36889999999999999999999999999999776432 1111 11100 1123455566 5556677888
Q ss_pred HHHhcCCCCCCeEEEeCC
Q 032438 101 DEAMKKPSCQKGFILDGF 118 (141)
Q Consensus 101 ~~~l~~~~~~~g~IldG~ 118 (141)
..++.+...+.++|++|=
T Consensus 81 i~~v~~~~~~~~~IlEGG 98 (233)
T PF01745_consen 81 ISEVNSYSAHGGLILEGG 98 (233)
T ss_dssp HHHHHTTTTSSEEEEEE-
T ss_pred HHHHHhccccCceEEeCc
Confidence 888887777889999984
No 107
>PRK07667 uridine kinase; Provisional
Probab=98.14 E-value=3.7e-06 Score=61.85 Aligned_cols=47 Identities=21% Similarity=0.119 Sum_probs=36.1
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHH
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAA 70 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~ 70 (141)
-+.........|.|.|+|||||||+|+.|++.+ +...++.++.....
T Consensus 9 ~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~ 60 (193)
T PRK07667 9 IMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER 60 (193)
T ss_pred HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence 333333445899999999999999999999876 35588888877544
No 108
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.11 E-value=3.6e-06 Score=60.58 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=30.7
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDML 67 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll 67 (141)
++..|+|+|+|||||||+++.|+..+ ++.+++.|.+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 56799999999999999999999887 25667776553
No 109
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.09 E-value=2.2e-06 Score=61.04 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=25.8
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~ 72 (141)
+|+|+|+||+||||+++.|++. |+.++ .+..+....
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~ 36 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIE 36 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHH
Confidence 6899999999999999999988 87766 777776654
No 110
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.09 E-value=6.4e-06 Score=69.87 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=33.8
Q ss_pred hcCCCCeEEEEECCCCCChhhHHHHHHhhhCc------cccchHHH
Q 032438 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEYCL------CHLATGDM 66 (141)
Q Consensus 27 ~~~~~~~~I~i~G~pgsGKstla~~La~~~~~------~~is~~~l 66 (141)
...+++..|+|+|.|||||||+++.|++.++. .+++.|.+
T Consensus 387 ~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 387 PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 34566789999999999999999999999985 77777655
No 111
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.09 E-value=3.8e-05 Score=59.04 Aligned_cols=42 Identities=31% Similarity=0.535 Sum_probs=35.6
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVA 72 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~~ 72 (141)
.+..+++.|+||+|||.++-.++.+. .+.++++.+++.+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 67799999999999999999998654 3667999999988644
No 112
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.08 E-value=8.1e-06 Score=61.30 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=32.7
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCcc---ccchHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLC---HLATGDMLRA 69 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~---~is~~~ll~~ 69 (141)
++..|-|.|++||||||+|+.|++.++.. .++.|+..+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~ 48 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKD 48 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccc
Confidence 34788899999999999999999999854 6777777764
No 113
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.08 E-value=3.5e-06 Score=66.44 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=33.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
.++.|+|+||+|||||++|..|+++++..++|.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 456899999999999999999999999999998885
No 114
>PHA00729 NTP-binding motif containing protein
Probab=98.08 E-value=5.1e-06 Score=62.78 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
....|+|+|+||+||||+|..|++.++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999998764
No 115
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.07 E-value=1.4e-05 Score=57.82 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=37.0
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh-CccccchHHHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVA 72 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~-~~~~is~~~ll~~~~~ 72 (141)
.++++++|-||+||||+.+...+.+ +...++-++++-+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~ 45 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAK 45 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHH
Confidence 5789999999999999999999988 8888999999987654
No 116
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.07 E-value=3.9e-06 Score=56.17 Aligned_cols=27 Identities=37% Similarity=0.644 Sum_probs=23.9
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
+..++|.||||+||||+++.++..++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 468999999999999999999987754
No 117
>PRK12377 putative replication protein; Provisional
Probab=98.06 E-value=5.4e-05 Score=58.05 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=33.1
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAV 71 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~ 71 (141)
...++|.|+||+|||+++..++..+ .+.++++.+++....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH
Confidence 4589999999999999999999765 356788888887653
No 118
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.05 E-value=3.8e-06 Score=61.94 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=31.6
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhh---CccccchHHHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRA 69 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~---~~~~is~~~ll~~ 69 (141)
....|..+++.|+|||||||++..+...+ ++.+|+.|++...
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 45678899999999999999999999986 6888999887543
No 119
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.05 E-value=1.6e-05 Score=66.24 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=71.9
Q ss_pred chhHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHHHccCcchHHHHHHhhcC
Q 032438 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 88 (141)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g 88 (141)
+.-.+++++..+.....++-.++|.|+||+||||++..++... .+.+++.++-..+.......+|-.+..+.++|
T Consensus 245 ~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g 324 (484)
T TIGR02655 245 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQG 324 (484)
T ss_pred cCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCC
Confidence 4456778888888888999999999999999999999998744 36788888777766655445555566666665
Q ss_pred Cc----------chHHHHHHHHHHHhcCCCCCCeEEEeCCC
Q 032438 89 EL----------VSDDLVVGIIDEAMKKPSCQKGFILDGFP 119 (141)
Q Consensus 89 ~~----------ip~~~~~~ll~~~l~~~~~~~g~IldG~P 119 (141)
.+ .+++. .+.+.+.+.+.. ..-+|||...
T Consensus 325 ~l~~~~~~p~~~~~~~~-~~~i~~~i~~~~-~~~vvIDsi~ 363 (484)
T TIGR02655 325 LLKIICAYPESAGLEDH-LQIIKSEIADFK-PARIAIDSLS 363 (484)
T ss_pred cEEEEEcccccCChHHH-HHHHHHHHHHcC-CCEEEEcCHH
Confidence 32 12343 344445554332 3578889763
No 120
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.05 E-value=4.8e-06 Score=62.28 Aligned_cols=100 Identities=18% Similarity=0.227 Sum_probs=61.6
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh------hhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcc
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD------EYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV 91 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~------~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~i 91 (141)
++.+++.+....+++..++|.|+||+|||+++..++. ..++.++++++-.++.++.-...+-.+..+.++|...
T Consensus 5 I~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~ 84 (226)
T PF06745_consen 5 IPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLK 84 (226)
T ss_dssp STTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEE
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEE
Confidence 3456666766788889999999999999999988663 2357788877666665544334555566665554310
Q ss_pred --------------hHHHHHHHHHHHhcCCCCCCeEEEeCC
Q 032438 92 --------------SDDLVVGIIDEAMKKPSCQKGFILDGF 118 (141)
Q Consensus 92 --------------p~~~~~~ll~~~l~~~~~~~g~IldG~ 118 (141)
..+-+...+.+.+.+... .-+|||.+
T Consensus 85 ~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~-~~vVIDsl 124 (226)
T PF06745_consen 85 IIDAFPERIGWSPNDLEELLSKIREAIEELKP-DRVVIDSL 124 (226)
T ss_dssp EEESSGGGST-TSCCHHHHHHHHHHHHHHHTS-SEEEEETH
T ss_pred EEecccccccccccCHHHHHHHHHHHHHhcCC-CEEEEECH
Confidence 112233444555544332 67888975
No 121
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.05 E-value=5.2e-06 Score=59.72 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=34.2
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~ 72 (141)
+.+.+|+|+|+||+||||++.++++.+.-.-++++-++..++.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 4578999999999999999999998876555666666655554
No 122
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=98.04 E-value=1.7e-05 Score=60.11 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHH
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAA 70 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~ 70 (141)
.+..+++-+....+++..++|.|+||+|||+++..++... .+.++++++-..+.
T Consensus 6 Gi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 6 GIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQV 64 (237)
T ss_pred CcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHH
Confidence 4566777777778889999999999999999998766432 36677766544443
No 123
>PRK06526 transposase; Provisional
Probab=98.02 E-value=1.3e-05 Score=61.58 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=32.6
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAV 71 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~ 71 (141)
.+..++|.||||+|||+++..|+... .+.+++..+++....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~ 142 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLA 142 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHH
Confidence 45689999999999999999987643 456677888877653
No 124
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.02 E-value=1.6e-05 Score=59.11 Aligned_cols=58 Identities=24% Similarity=0.235 Sum_probs=50.0
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcch
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 92 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip 92 (141)
.+-++|..+|||||+++.+- .+|++.|+.|-+.|+.++++++..+.+.+++...-+.+
T Consensus 3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~ 60 (225)
T KOG3220|consen 3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLE 60 (225)
T ss_pred EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeecc
Confidence 56789999999999999985 88999999999999999999988888887776654433
No 125
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=7.2e-06 Score=69.49 Aligned_cols=37 Identities=30% Similarity=0.565 Sum_probs=33.1
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~ 64 (141)
+..||..++++||||+|||.+|+.+|.+++++++++.
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~is 255 (802)
T KOG0733|consen 219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS 255 (802)
T ss_pred CCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeec
Confidence 4678899999999999999999999999998887654
No 126
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.02 E-value=8.6e-06 Score=61.55 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=24.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
..+...+++.||||.||||+|+.+|+.++...
T Consensus 47 ~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 47 GEALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp TS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred CCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 34456899999999999999999999997554
No 127
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.02 E-value=5.3e-06 Score=61.46 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=31.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC---ccccchHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDML 67 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~---~~~is~~~ll 67 (141)
.+++..|.|.|++||||||+++.|+..++ +.+++.++..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 35567899999999999999999998775 5566766654
No 128
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.99 E-value=5.8e-06 Score=60.10 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=32.0
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll 67 (141)
+..++|+|++||||||+++.|+..++..+++-+++.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~ 38 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLH 38 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccC
Confidence 468999999999999999999999988888887763
No 129
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.99 E-value=5.4e-06 Score=67.82 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~ 64 (141)
+|..|+++||||+|||++|+.||+.++.+++.++
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 4679999999999999999999999987776666
No 130
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.98 E-value=4.8e-06 Score=63.38 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.3
Q ss_pred EECCCCCChhhHHHHHHhhhC
Q 032438 37 LVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 37 i~G~pgsGKstla~~La~~~~ 57 (141)
|+|||||||||+++.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999998664
No 131
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.98 E-value=1.6e-05 Score=53.96 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=19.8
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
....++|.|+||+|||++++.+++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999865
No 132
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.98 E-value=5.7e-06 Score=60.24 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=31.7
Q ss_pred EEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRA 69 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~ 69 (141)
.|.|.|+|||||||+|+.|++.+ ++..++.|++.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 47899999999999999999986 5678999999874
No 133
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.97 E-value=7.7e-06 Score=58.94 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.6
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhC
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
..++|+|+|||||||+++.|+..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998765
No 134
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.97 E-value=1.5e-05 Score=59.93 Aligned_cols=48 Identities=25% Similarity=0.407 Sum_probs=36.1
Q ss_pred CCCCchhHHHHHHHHhh---hcCCCCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 10 EDVPSVDLMTELLRRMK---CASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 10 ~~~~~~~~~~~~~~~~~---~~~~~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
.+-....++..+.+.+. ..+.++.+|.|.|++||||||+++.|+..+.
T Consensus 8 ~~~~~~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 8 RDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred ChHhHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34445556666655554 3457789999999999999999999998763
No 135
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.96 E-value=7.1e-06 Score=59.78 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=24.1
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
++.|+|.|++||||||+++.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999884
No 136
>PRK04328 hypothetical protein; Provisional
Probab=97.95 E-value=3.4e-05 Score=58.95 Aligned_cols=53 Identities=15% Similarity=0.030 Sum_probs=39.4
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHH
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRA 69 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~ 69 (141)
.+..+++-+....+++..++|.|+||+|||+++..++... .+.+++.++-..+
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~ 65 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQ 65 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHH
Confidence 4556777777677888999999999999999998876432 3567776554443
No 137
>PLN02840 tRNA dimethylallyltransferase
Probab=97.95 E-value=7.2e-06 Score=67.08 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=31.9
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
+...|+|.||+||||||++..|+++++..+++.|.+
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 356899999999999999999999999888888764
No 138
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.93 E-value=8.5e-06 Score=66.73 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=29.5
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~ 64 (141)
|..|+++||||+|||++|+.||+.++..++.++
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 679999999999999999999999987766665
No 139
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.93 E-value=3.4e-05 Score=53.88 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=32.0
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
..+-+.+...-+++..|++.|+.|+||||+++.+++.+|..
T Consensus 9 ~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 9 DKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34445554334567799999999999999999999998853
No 140
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.92 E-value=2e-05 Score=57.18 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=33.3
Q ss_pred hhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHH
Q 032438 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDML 67 (141)
Q Consensus 26 ~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll 67 (141)
.....++..|+|+|+|||||||+++.|+..+ +..+++.+++-
T Consensus 12 ~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 12 ALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred HHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 3456778999999999999999999999876 24566666544
No 141
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.92 E-value=4.1e-05 Score=57.65 Aligned_cols=55 Identities=16% Similarity=0.133 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHH
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAV 71 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~ 71 (141)
.++.++..+....+++..++|.|+||||||+++..++... .+.+++.++-.++.+
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~ 69 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYL 69 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHH
Confidence 4566777777678888999999999999999999997442 466777665554443
No 142
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.92 E-value=2e-05 Score=63.37 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
.+...++|.|||||||||+|+.|++.++.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34567899999999999999999988754
No 143
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.92 E-value=4.7e-05 Score=56.95 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHH
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDML 67 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll 67 (141)
.+..+++-+.....++..++|.|+||+|||+++..++... ++.+++.++..
T Consensus 5 Gi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~ 60 (229)
T TIGR03881 5 GVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESR 60 (229)
T ss_pred ChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCH
Confidence 3566677676678889999999999999999998776322 35566654433
No 144
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.92 E-value=1.8e-05 Score=65.46 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=34.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
++|..|++.|+||+||||++..||.++|+.++-..|.+++..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~l 294 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVL 294 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHH
Confidence 568999999999999999999999999998665555555543
No 145
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.91 E-value=1.7e-05 Score=57.91 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=25.9
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...+|..||++|.+||||||+|..|.+++
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 35667899999999999999999999877
No 146
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.91 E-value=1e-05 Score=59.39 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.4
Q ss_pred EEEEECCCCCChhhHHHHHHhhhC
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~ 57 (141)
+|.|.|+|||||||+|+.|++.++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999886
No 147
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.91 E-value=9.8e-06 Score=58.31 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.1
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
..|+|+||+||||||+++.|++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 57999999999999999999987643
No 148
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.91 E-value=4.8e-05 Score=55.39 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.6
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
.|+|.|++||||||+++.|++.+++.+
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~ 27 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEV 27 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcc
Confidence 388999999999999999999877543
No 149
>PLN02748 tRNA dimethylallyltransferase
Probab=97.90 E-value=1.1e-05 Score=66.87 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=33.8
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
.+++..|+|+||+|||||+++..||+.++..+|+.|.+
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Dsm 56 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSM 56 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchh
Confidence 34566899999999999999999999999999999863
No 150
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.90 E-value=7.8e-06 Score=59.95 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=29.7
Q ss_pred EEEEECCCCCChhhHHHHHHhhh---CccccchHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLR 68 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~---~~~~is~~~ll~ 68 (141)
.|.|.|++||||||+++.|+..+ ++.+++.|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 47899999999999999999887 467888887664
No 151
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.90 E-value=1.5e-05 Score=58.61 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=32.6
Q ss_pred hcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHH
Q 032438 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLR 68 (141)
Q Consensus 27 ~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~ 68 (141)
....+|..|+|+|++||||||+++.|+..+ +..+++.+++..
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH 65 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence 334678899999999999999999999876 355666555543
No 152
>PRK09183 transposase/IS protein; Provisional
Probab=97.90 E-value=7.8e-05 Score=57.39 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=32.1
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAA 70 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~ 70 (141)
...+..++|+||||+|||+++..++... .+.+++..+++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHH
Confidence 3456789999999999999999997442 45567777777543
No 153
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.90 E-value=1.4e-05 Score=56.49 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=26.9
Q ss_pred EEEEECCCCCChhhHHHHHHhhh---C--ccccchHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLR 68 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~---~--~~~is~~~ll~ 68 (141)
.|+|.|.|||||||+++.|++.+ + ..+++.+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 37899999999999999999987 5 34455444433
No 154
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.89 E-value=1.8e-05 Score=53.51 Aligned_cols=38 Identities=42% Similarity=0.713 Sum_probs=28.9
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh---C--ccccchHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLR 68 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~---~--~~~is~~~ll~ 68 (141)
.+..++|+|+||+|||++++.+++.+ + +..++..+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 45689999999999999999999876 3 34455444443
No 155
>PRK15453 phosphoribulokinase; Provisional
Probab=97.89 E-value=1.1e-05 Score=62.88 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC-----ccccchHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLR 68 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~ll~ 68 (141)
.++++.|.|+|.|||||||+++.|++.++ ..+++.|+.-+
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 46778999999999999999999998774 34566665543
No 156
>PRK06921 hypothetical protein; Provisional
Probab=97.89 E-value=3.8e-05 Score=59.41 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=31.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh------CccccchHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY------CLCHLATGDMLRAA 70 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~------~~~~is~~~ll~~~ 70 (141)
....++|.|+||+|||+++..++..+ .+.+++..+++...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH
Confidence 35689999999999999999998743 34577777776654
No 157
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.89 E-value=9.5e-06 Score=63.43 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=30.9
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll 67 (141)
.|+|+||+|||||+++..|++.++..+||+|.+-
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~q 34 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQ 34 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhh
Confidence 3799999999999999999999999999998753
No 158
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=1.9e-05 Score=63.17 Aligned_cols=48 Identities=19% Similarity=0.428 Sum_probs=40.6
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCc--cccchHHHHHHHHHccC
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRAAVAAKT 75 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~--~~is~~~ll~~~~~~~~ 75 (141)
+..||+.|++.||||.|||-+|+..|.+.+. ..+.-++|+++++-.++
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa 230 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA 230 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence 5788999999999999999999999998864 45677889988875544
No 159
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.89 E-value=1.8e-05 Score=60.87 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
+.+..+.+++...-.....++|.|+||+|||++|+.|++.+|..++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 3444554444332233457889999999999999999998876554
No 160
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.88 E-value=3e-05 Score=58.61 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=33.1
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchH
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~ 64 (141)
++.+++.+....++...++|.|+||+||||++..++... ++.+++.+
T Consensus 10 ~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 10 RDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred EeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 344556666667778899999999999999986654422 34555554
No 161
>PRK05439 pantothenate kinase; Provisional
Probab=97.88 E-value=1.7e-05 Score=62.60 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=32.8
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC-------ccccchHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDMLR 68 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~-------~~~is~~~ll~ 68 (141)
...|..|.|.|+|||||||+|+.|++.++ +..+++|+...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 45678999999999999999999998553 45788887764
No 162
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.88 E-value=1.3e-05 Score=58.00 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=22.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.|+|.|++||||||+++.|++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999988
No 163
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.87 E-value=1.1e-05 Score=55.65 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.3
Q ss_pred EEEECCCCCChhhHHHHHHhhhCccc
Q 032438 35 LILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 35 I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
|+|.|+||+|||++++.+++.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 78999999999999999999987443
No 164
>PRK08181 transposase; Validated
Probab=97.87 E-value=2.4e-05 Score=60.62 Aligned_cols=42 Identities=26% Similarity=0.448 Sum_probs=34.3
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh-----hCccccchHHHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE-----YCLCHLATGDMLRAAVA 72 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~-----~~~~~is~~~ll~~~~~ 72 (141)
+...++|.||||+|||.++..++.. +.+.+++..+++.....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~ 151 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQV 151 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHH
Confidence 4567999999999999999999853 34778899999887643
No 165
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.87 E-value=1.2e-05 Score=58.69 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=24.1
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
..++|+||+||||||+++.|+..++..+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~ 30 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQL 30 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeE
Confidence 4789999999999999999998776433
No 166
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.2e-05 Score=63.70 Aligned_cols=41 Identities=17% Similarity=0.472 Sum_probs=32.0
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCcc-----------ccchHHHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLC-----------HLATGDMLRAAVA 72 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~-----------~is~~~ll~~~~~ 72 (141)
...|+++||||.|||++|+.||+++.+. -++.-.|.-+++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFs 228 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFS 228 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHh
Confidence 4589999999999999999999988532 3566666666554
No 167
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.85 E-value=1.7e-05 Score=58.34 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=25.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
+++..|+|+||+||||||+++.|+..+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4678999999999999999999998874
No 168
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.85 E-value=1.4e-05 Score=66.64 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=30.3
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
+.++|+.|++.||||+|||.+|+.+|..++.+.+.
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~ 289 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR 289 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 34678899999999999999999999999876544
No 169
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=1.3e-05 Score=59.98 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=21.7
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+-|+++|+|||||||+|+.|++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 368999999999999999999866
No 170
>COG0645 Predicted kinase [General function prediction only]
Probab=97.84 E-value=4.8e-05 Score=54.96 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=35.8
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
..+++.|.||+||||+|+.|++.+|..++..|++.+...
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~ 40 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLF 40 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhc
Confidence 467899999999999999999999999999999988764
No 171
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.84 E-value=3.4e-06 Score=64.02 Aligned_cols=85 Identities=12% Similarity=0.116 Sum_probs=52.1
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh----CccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHH-HH
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD-LV 96 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~----~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~-~~ 96 (141)
+..++...+++..|.|+|++||||||+.+.|.... |-.+++-.+.....-+.-..+...+.-.++...++|+. .+
T Consensus 20 L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~ 99 (258)
T COG3638 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVL 99 (258)
T ss_pred eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHH
Confidence 45566778889999999999999999999998422 22233332322221111112233344557778888874 55
Q ss_pred HHHHHHHhcC
Q 032438 97 VGIIDEAMKK 106 (141)
Q Consensus 97 ~~ll~~~l~~ 106 (141)
.+++.-++..
T Consensus 100 ~NVl~grl~~ 109 (258)
T COG3638 100 ENVLLGRLGY 109 (258)
T ss_pred HHHHhhhccc
Confidence 5566666644
No 172
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.84 E-value=1.7e-05 Score=64.33 Aligned_cols=41 Identities=24% Similarity=0.512 Sum_probs=33.0
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCcc--ccchHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRA 69 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~--~is~~~ll~~ 69 (141)
..+|..|+|.||||+|||++|+.++..++.. .++..++...
T Consensus 162 ~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 162 IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 4678899999999999999999999988754 4555666543
No 173
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.83 E-value=5.9e-06 Score=62.09 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=30.8
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHH
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIK 53 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La 53 (141)
.++++.++....++.+++|+||+||||||+.+.|.
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 45567777788899999999999999999999997
No 174
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.83 E-value=1.9e-05 Score=57.05 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.6
Q ss_pred EEEEECCCCCChhhHHHHHHhhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~ 56 (141)
+|+|+|+||+||||+.+++.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 175
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.83 E-value=5.3e-06 Score=61.32 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=32.6
Q ss_pred HHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 20 ~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.++.+++...++..++++||+|+||||+.+.|....
T Consensus 16 ~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 4677888888999999999999999999999998644
No 176
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.81 E-value=2.4e-05 Score=56.97 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=32.1
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhC--ccccchHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAA 70 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~--~~~is~~~ll~~~ 70 (141)
.+|++.|+|.|||||+|+.|.+.+. +.|+++|.++...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~ 41 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMM 41 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhc
Confidence 5899999999999999999999885 5689999998853
No 177
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.81 E-value=1.9e-05 Score=59.01 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=26.3
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
.+.|+|-|+.|+||||+|+.||++++..+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~ 32 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKV 32 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCce
Confidence 46899999999999999999999999654
No 178
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.81 E-value=2.1e-05 Score=57.74 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++..|+|+|||||||+|+++.|.+++
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 467899999999999999999998876
No 179
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.81 E-value=3.2e-05 Score=58.41 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=32.7
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~ 72 (141)
.+|.|+|.|||||||+++.+.+..+...+++++-+++.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIENYNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhcCCcEEEehhHHHHHHHH
Confidence 3789999999999999999976644444999999987653
No 180
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.80 E-value=3.4e-05 Score=59.23 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=38.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~ 72 (141)
-+.|.+|+|-|+||.||||+|..+|.++|+.++--.|.+|+.+.
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR 129 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLR 129 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHH
Confidence 35588999999999999999999999999999887788877654
No 181
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.80 E-value=3.6e-06 Score=61.29 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=27.5
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..++....++..|.|+||+||||||+.+.+|.
T Consensus 20 ~~isl~v~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 20 NNISLSVRAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred cceeeeecCCceEEEeCCCCccHHHHHHHHHh
Confidence 44455677889999999999999999999994
No 182
>PTZ00301 uridine kinase; Provisional
Probab=97.79 E-value=2.4e-05 Score=58.58 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=28.3
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhC-------ccccchHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDMLR 68 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~-------~~~is~~~ll~ 68 (141)
-..|-|.|+|||||||+|+.|++++. +..++.|+..+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 36889999999999999999987762 33556666544
No 183
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.78 E-value=2.6e-05 Score=57.02 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..|+|.|++||||||+++.|++.+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999876
No 184
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=7e-05 Score=64.49 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=35.9
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhC--ccccchHHHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRA 69 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~--~~~is~~~ll~~ 69 (141)
...+++++++.||||+|||++++.+|+.+| +..+|++-+-++
T Consensus 346 ~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDE 389 (782)
T COG0466 346 KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDE 389 (782)
T ss_pred ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccH
Confidence 356678999999999999999999999986 667888887654
No 185
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.77 E-value=2.9e-05 Score=62.31 Aligned_cols=39 Identities=28% Similarity=0.578 Sum_probs=30.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccc--cchHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDMLR 68 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~--is~~~ll~ 68 (141)
.+|..++|.||||+|||++++.++..++..+ ++..++..
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 5678899999999999999999999887554 34444443
No 186
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.77 E-value=2.4e-05 Score=63.20 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=35.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCcc--ccchHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAA 70 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~--~is~~~ll~~~ 70 (141)
.++|..+.|.||||+|||.+|+.+++++|+. .++..+|....
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 5778899999999999999999999999864 57777777443
No 187
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=3e-05 Score=67.26 Aligned_cols=41 Identities=29% Similarity=0.502 Sum_probs=34.0
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchH--HHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRA 69 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~--~ll~~ 69 (141)
-+.|+.++|+||||+|||-+|+.+|.+-|++++++. |++.-
T Consensus 341 AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 341 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 355899999999999999999999999998887664 44443
No 188
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.77 E-value=4.9e-05 Score=63.89 Aligned_cols=32 Identities=34% Similarity=0.594 Sum_probs=26.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
..+....+++|||||||||..+.||+.+|+.+
T Consensus 42 ~~~~~iLlLtGP~G~GKtttv~~La~elg~~v 73 (519)
T PF03215_consen 42 SSPKRILLLTGPSGCGKTTTVKVLAKELGFEV 73 (519)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 33455788899999999999999999998654
No 189
>PRK06761 hypothetical protein; Provisional
Probab=97.76 E-value=2.2e-05 Score=61.29 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=24.3
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
++.|+|.|+|||||||+++.|+++++.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 358999999999999999999998863
No 190
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.75 E-value=3.1e-05 Score=56.06 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=24.2
Q ss_pred EEEEECCCCCChhhHHHHHHhhhC--ccccchH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYC--LCHLATG 64 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~--~~~is~~ 64 (141)
.++|+|+||||||++|..++...+ ..+++..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 378999999999999999997754 3444333
No 191
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.75 E-value=2.9e-05 Score=63.28 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=29.1
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
..+|..++|.||||+|||++++.+|...+..++.
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 4678899999999999999999999988765443
No 192
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.75 E-value=8.9e-05 Score=62.02 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=54.3
Q ss_pred chhhhhcCCCCchhHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh------hCccccchHHHHHHHHHccCc
Q 032438 3 SSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE------YCLCHLATGDMLRAAVAAKTP 76 (141)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~------~~~~~is~~~ll~~~~~~~~~ 76 (141)
+++....+..| -.+..++..+....+++..++|.|+||+|||+++..++.. ..+.++++++-..+..+.-..
T Consensus 4 ~~~~~~~~ri~--TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~ 81 (509)
T PRK09302 4 PSASPGIEKLP--TGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVAS 81 (509)
T ss_pred CccCCCCcccc--CCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHH
Confidence 34444444343 4678888888777888999999999999999999987632 236677777665554433222
Q ss_pred chHHHHHHhhcC
Q 032438 77 LGIKAKEAMDKG 88 (141)
Q Consensus 77 ~g~~i~~~l~~g 88 (141)
.|-.+..+..+|
T Consensus 82 ~g~d~~~~~~~g 93 (509)
T PRK09302 82 FGWDLQKLIDEG 93 (509)
T ss_pred cCCCHHHHhhCC
Confidence 333344444333
No 193
>PF13173 AAA_14: AAA domain
Probab=97.73 E-value=3.1e-05 Score=53.08 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=32.7
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhC----ccccchHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYC----LCHLATGDMLRAA 70 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~----~~~is~~~ll~~~ 70 (141)
.+.++|.||.|+||||+++.+++.+. +.++++++.....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~ 44 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRR 44 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHH
Confidence 45899999999999999999998865 7788888776643
No 194
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=5.8e-05 Score=62.82 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=29.1
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
+.+.....+-+..+++.||||+||||+|+.+|+.+++
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3333334555667999999999999999999998875
No 195
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.72 E-value=2e-05 Score=59.29 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=27.5
Q ss_pred EEEEECCCCCChhhHHHHHHhhhC-------ccccchHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDML 67 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~-------~~~is~~~ll 67 (141)
+|-|.|++||||||+++.|+..+. +.++++|+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 367899999999999999998773 4567777664
No 196
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.72 E-value=6.2e-05 Score=59.56 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=27.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
..++..++|.||||+|||++|+.++..++...
T Consensus 48 ~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 48 GEALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 44567899999999999999999999987643
No 197
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.72 E-value=0.00014 Score=54.40 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=32.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRA 69 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~ 69 (141)
.....++|.|+||+|||++++.++... .+.+++..++...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~ 84 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA 84 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH
Confidence 445689999999999999999999865 6777887776543
No 198
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.72 E-value=3.3e-05 Score=62.98 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=26.5
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
..+|+|+|++||||||+++.|++.||...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 56999999999999999999999998764
No 199
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.72 E-value=3.6e-05 Score=57.18 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=23.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+++..|+|+||+||||||+++.|.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 445778999999999999999999864
No 200
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.71 E-value=3.3e-05 Score=64.43 Aligned_cols=35 Identities=31% Similarity=0.514 Sum_probs=29.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccch
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~ 63 (141)
..+|..+++.||||+|||++++.+|...+..++.+
T Consensus 85 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 45677899999999999999999999887665443
No 201
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.71 E-value=4.4e-05 Score=55.64 Aligned_cols=43 Identities=30% Similarity=0.571 Sum_probs=33.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh-----hhCccccchHHHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD-----EYCLCHLATGDMLRAAVA 72 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~-----~~~~~~is~~~ll~~~~~ 72 (141)
..+..++|.|+||+|||.+|..++. .+.+.+++..+|+.....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 3467899999999999999999985 345788999999988643
No 202
>PRK09087 hypothetical protein; Validated
Probab=97.70 E-value=5.9e-05 Score=56.97 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=32.8
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
.+.++|.|++|||||++++.+++.++..+++.+++..+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~ 82 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDA 82 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHH
Confidence 456999999999999999999999998888887554443
No 203
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00014 Score=61.99 Aligned_cols=44 Identities=23% Similarity=0.415 Sum_probs=36.0
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccch--HHHHHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAV 71 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~--~~ll~~~~ 71 (141)
+...|-.|++.||||+|||-+|+..|.+-|..++++ -+|+..++
T Consensus 541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYV 586 (802)
T KOG0733|consen 541 GIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYV 586 (802)
T ss_pred CCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHh
Confidence 345588999999999999999999998877666555 58888765
No 204
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.69 E-value=3.5e-05 Score=60.35 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=30.8
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC-------ccccchHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDMLR 68 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~-------~~~is~~~ll~ 68 (141)
.+.|.+|-|.|++||||||+++.|...+. +..+++|....
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 45678999999999999999998876542 44567776553
No 205
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=4.4e-05 Score=60.17 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=35.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLR 68 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~ 68 (141)
+++.|+|.||.+||||-++-.||+++|..+||+|.+--
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 46789999999999999999999999999999998764
No 206
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.69 E-value=8.4e-05 Score=55.64 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.4
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
.|+|.|..||||||+++.|+++++...+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 4889999999999999999999876444
No 207
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.69 E-value=2.2e-05 Score=56.33 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=26.5
Q ss_pred ECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 38 VGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 38 ~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
+|+|||||||+++.|+..+|..+++.|.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence 59999999999999999999988888765
No 208
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.69 E-value=8.4e-05 Score=57.85 Aligned_cols=31 Identities=39% Similarity=0.598 Sum_probs=26.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
..++..++|.||||+|||++++.++..++..
T Consensus 27 ~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 27 QEALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3445679999999999999999999988743
No 209
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.69 E-value=3.8e-05 Score=62.90 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=26.9
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
...++|.||||+|||++|+.||+.++.+++.
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~ 138 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAI 138 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcee
Confidence 4679999999999999999999998866553
No 210
>PRK07429 phosphoribulokinase; Provisional
Probab=97.69 E-value=3.9e-05 Score=61.07 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=33.0
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC---ccccchHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDML 67 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~---~~~is~~~ll 67 (141)
..++.+|.|.|++||||||+++.|++.++ ...++.|++.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 45678999999999999999999999886 5567777763
No 211
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.68 E-value=4.2e-05 Score=60.75 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=26.6
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
...|+|.|+||+||||+++.+|+++|..++
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 457999999999999999999999986654
No 212
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.66 E-value=5e-05 Score=62.61 Aligned_cols=33 Identities=39% Similarity=0.642 Sum_probs=28.5
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
..+|..++|.||||+|||++++.+|..++..++
T Consensus 214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi 246 (438)
T PTZ00361 214 IKPPKGVILYGPPGTGKTLLAKAVANETSATFL 246 (438)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 467889999999999999999999998875444
No 213
>PLN02348 phosphoribulokinase
Probab=97.66 E-value=6.1e-05 Score=61.17 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=26.6
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
...++..|-|.|++||||||+++.|++.++
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345678999999999999999999999886
No 214
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.65 E-value=6.6e-05 Score=53.63 Aligned_cols=40 Identities=25% Similarity=0.363 Sum_probs=23.7
Q ss_pred HHHHHHHHhh-hcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 17 LMTELLRRMK-CASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 17 ~~~~~~~~~~-~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++++..-+. .....+..++|+|++|+|||++.+.+.+.+
T Consensus 8 e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 8 EIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp HHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444442 245667899999999999999999888655
No 215
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.65 E-value=0.00013 Score=60.74 Aligned_cols=72 Identities=11% Similarity=0.147 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh----hh--CccccchHHHHHHHHHccCcchHHHHHHhhcC
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD----EY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 88 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~----~~--~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g 88 (141)
.++.++.-+....+++..++|.|+|||||||+|..++. ++ .+.+++.++-..+..+.-..+|-.++.+.++|
T Consensus 6 GI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g 83 (484)
T TIGR02655 6 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG 83 (484)
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC
Confidence 35566666666788899999999999999999999843 22 46777776655555443333444444444443
No 216
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.64 E-value=0.00012 Score=54.37 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=32.1
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLR 68 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~ 68 (141)
...+..++|+|+||+|||++++.++... .+.+++..++..
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 4556789999999999999999999764 356777777654
No 217
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.64 E-value=0.00011 Score=56.04 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=19.4
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..-+|+|||||||||.|....+-+
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHHH
Confidence 346899999999999998776543
No 218
>PHA02624 large T antigen; Provisional
Probab=97.63 E-value=0.00012 Score=62.33 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=41.8
Q ss_pred chhHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchH
Q 032438 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (141)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~ 64 (141)
+.+.+.++++.+..+.++...++|.||||+||||++..|.+-+|-..+++.
T Consensus 413 ~~~~~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVN 463 (647)
T PHA02624 413 FDDVIYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVN 463 (647)
T ss_pred hHHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEee
Confidence 446777778888766777789999999999999999999999965566653
No 219
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.63 E-value=0.00012 Score=56.46 Aligned_cols=40 Identities=30% Similarity=0.437 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...++++.+.-...+..+|=|+||||+||||+...|...|
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 4556677776556678899999999999999999999876
No 220
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.63 E-value=2e-05 Score=62.84 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=33.1
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
.+..++....++..++|+||+||||||+.+.+| |+.-++-+++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IA---GLe~~~~G~I 60 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIA---GLEEPTSGEI 60 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCceE
Confidence 345566667888999999999999999999999 5554444433
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.62 E-value=0.00087 Score=51.29 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=32.0
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAA 70 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~ 70 (141)
..+++.|+||+|||+++..++..+ .+.++++.+++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 479999999999999999999766 35677888888654
No 222
>PRK04195 replication factor C large subunit; Provisional
Probab=97.61 E-value=6e-05 Score=62.71 Aligned_cols=34 Identities=35% Similarity=0.664 Sum_probs=28.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccch
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~ 63 (141)
.++..++|.||||+||||+++.+++.+++.++.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3477899999999999999999999998665443
No 223
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.60 E-value=6.2e-05 Score=55.68 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
|.+|++.||+|+||||.+-+||.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 6789999999999999999999776
No 224
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.60 E-value=0.0001 Score=57.59 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=24.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
...|..+++.||||+|||++++.+++.++.
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~~ 69 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEVGA 69 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhCc
Confidence 344556777999999999999999988754
No 225
>PF05729 NACHT: NACHT domain
Probab=97.60 E-value=6.2e-05 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEECCCCCChhhHHHHHHhhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++|.|+||+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 58999999999999999999766
No 226
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.59 E-value=6.6e-05 Score=54.42 Aligned_cols=39 Identities=18% Similarity=0.453 Sum_probs=29.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCc------cccchHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL------CHLATGDMLR 68 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~------~~is~~~ll~ 68 (141)
+|-..++++||+|+|||.+|+.|++.+.. ..+++.++-.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 35568999999999999999999998874 3455555444
No 227
>PF13245 AAA_19: Part of AAA domain
Probab=97.59 E-value=8.3e-05 Score=46.90 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=17.7
Q ss_pred CCeEEEEECCCCCChh-hHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKG-TQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKs-tla~~La~~ 55 (141)
+....+|.|||||||| |++..++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456778999999999 555554433
No 228
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.59 E-value=5.6e-05 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.9
Q ss_pred EEEECCCCCChhhHHHHHHhhhC
Q 032438 35 LILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 35 I~i~G~pgsGKstla~~La~~~~ 57 (141)
|+|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78899999999999999998753
No 229
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.00011 Score=61.72 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=29.2
Q ss_pred hcCCCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 27 ~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
..++-+..++++||||+||||+|+.+|+.+++.+
T Consensus 38 ~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 38 LNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred HcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 3456677999999999999999999999997753
No 230
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.59 E-value=0.00013 Score=57.17 Aligned_cols=35 Identities=29% Similarity=0.588 Sum_probs=27.7
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhC-------ccccchHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDML 67 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~-------~~~is~~~ll 67 (141)
+.++|.||||+||||+++.+++.+. +..++..++.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 4689999999999999999998763 3456666554
No 231
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.59 E-value=7.5e-05 Score=58.75 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=31.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLR 68 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~ 68 (141)
.++.|+|+||.|||||.+|-.||++ +...||.|.+--
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~Qv 39 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQV 39 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHH
Confidence 3458999999999999999999999 558888887653
No 232
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.58 E-value=0.00053 Score=54.64 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=33.8
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAV 71 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~ 71 (141)
...++|.|+||+|||+++..+|..+ .+.+++..+++....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 3789999999999999999999755 577889999887653
No 233
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.58 E-value=3.2e-05 Score=59.05 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=34.6
Q ss_pred HHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHH
Q 032438 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (141)
Q Consensus 20 ~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ 65 (141)
.+++.++....++..+.|+||+||||||+.+.+| |+..-+.++
T Consensus 17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiA---GL~~p~~G~ 59 (248)
T COG1116 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA---GLEKPTSGE 59 (248)
T ss_pred EEeccceeEECCCCEEEEECCCCCCHHHHHHHHh---CCCCCCCce
Confidence 3456677778889999999999999999999999 555544444
No 234
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.58 E-value=6.7e-05 Score=61.44 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.8
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
..|+|+||||+|||++|+.||+.++.++.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~ 145 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFA 145 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeE
Confidence 47999999999999999999999876554
No 235
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.57 E-value=0.00016 Score=57.68 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=29.9
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..++++.+.-...++.+|-|+|+|||||||++..|...+
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555554335678899999999999999999987655
No 236
>PLN02796 D-glycerate 3-kinase
Probab=97.57 E-value=8.5e-05 Score=59.44 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=30.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhC-----ccccchHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDML 67 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~ll 67 (141)
.+|.+|.|.|++||||||+++.|...+. ...+++++..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4678999999999999999999998763 3456666554
No 237
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0001 Score=62.90 Aligned_cols=45 Identities=24% Similarity=0.478 Sum_probs=36.1
Q ss_pred hhcCCCCeEEEEECCCCCChhhHHHHHHhhhCccccch--HHHHHHH
Q 032438 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAA 70 (141)
Q Consensus 26 ~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~--~~ll~~~ 70 (141)
.++..||+.|++.||||+|||++|+.+|..-++.++++ -+|+-.+
T Consensus 462 r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 462 RFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY 508 (693)
T ss_pred HhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence 34578899999999999999999999998777666555 4555544
No 238
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.57 E-value=0.0001 Score=56.09 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=28.1
Q ss_pred HHHHHhhhc-CCCCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 20 ELLRRMKCA-SKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 20 ~~~~~~~~~-~~~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
++...+... ..++..++|+|++|+||||+++.++..+.
T Consensus 30 ~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 30 RAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 344444432 33455899999999999999999998764
No 239
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00017 Score=57.97 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=26.4
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
..+-+..+++.||||+||||+|+.+++.+++
T Consensus 34 ~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 34 LGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred cCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 3445667899999999999999999998864
No 240
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.56 E-value=0.00014 Score=60.01 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.+|.+|+++|++|+||||++..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357799999999999999999999765
No 241
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.00011 Score=59.61 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=27.4
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
..-...++.||||+||||+|+.||...+..+..
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~ 78 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEA 78 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEE
Confidence 345688999999999999999999988765543
No 242
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00034 Score=54.63 Aligned_cols=48 Identities=23% Similarity=0.480 Sum_probs=38.1
Q ss_pred hcCCCCeEEEEECCCCCChhhHHHHHHhhhCcc--ccchHHHHHHHHHcc
Q 032438 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAAK 74 (141)
Q Consensus 27 ~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~--~is~~~ll~~~~~~~ 74 (141)
....||+.|++.||||+|||.+|+..|.+.+.. .+--++|+..++-++
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgeg 255 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 255 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhh
Confidence 457889999999999999999999999988644 444567777765443
No 243
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.56 E-value=3e-05 Score=62.21 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=27.2
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHH
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIK 53 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La 53 (141)
..++...+++..+.++||+||||||+.+.||
T Consensus 22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred ecceeeecCCcEEEEECCCCCCHHHHHHHHh
Confidence 4455567888999999999999999999999
No 244
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.55 E-value=4.8e-05 Score=60.83 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=29.4
Q ss_pred EEEECCCCCChhhHHHHHHhhhC------ccccchHHHHH
Q 032438 35 LILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLR 68 (141)
Q Consensus 35 I~i~G~pgsGKstla~~La~~~~------~~~is~~~ll~ 68 (141)
.+++|+|||||||+++.|++.+. +.+++.|+++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 57999999999999999987664 45899999984
No 245
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.55 E-value=6.3e-05 Score=54.13 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=27.4
Q ss_pred EEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAA 70 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~ 70 (141)
.++|.|+||+|||+++..++... .+.++++++-..+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 37899999999999999886533 46677776544443
No 246
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.55 E-value=8.5e-05 Score=59.02 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=26.5
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
..+|+|+|+||+||||+++.|+..|+...
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 46999999999999999999999988765
No 247
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.54 E-value=0.00016 Score=53.68 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchH
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~ 64 (141)
+..++.-+.....++..+.|.|+|||||||++..++... .+.+++.+
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 455666666567888999999999999999999998654 35566554
No 248
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.00014 Score=60.62 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=27.4
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
..+-+..++|.||||+||||+|+.+|+.+++.
T Consensus 36 ~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 36 SGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 44445679999999999999999999998774
No 249
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.53 E-value=0.00026 Score=59.28 Aligned_cols=102 Identities=14% Similarity=0.151 Sum_probs=60.4
Q ss_pred hHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHHHccCcchHHHHHHhhcCCc
Q 032438 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL 90 (141)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ 90 (141)
-.+..++.-+.....++..++|.|+||+|||+++..++... .+.+++.++-..+..+.-..+|-.+..+..+|..
T Consensus 257 tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l 336 (509)
T PRK09302 257 SGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLL 336 (509)
T ss_pred CCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCc
Confidence 34566666666567778899999999999999998887433 4667766654444333222333334444444432
Q ss_pred c-----hH----HHHHHHHHHHhcCCCCCCeEEEeCC
Q 032438 91 V-----SD----DLVVGIIDEAMKKPSCQKGFILDGF 118 (141)
Q Consensus 91 i-----p~----~~~~~ll~~~l~~~~~~~g~IldG~ 118 (141)
. |. +.....+...+.+.. .+-+|||++
T Consensus 337 ~i~~~~~~~~~~~~~~~~i~~~i~~~~-~~~vVIDsl 372 (509)
T PRK09302 337 KIICARPESYGLEDHLIIIKREIEEFK-PSRVAIDPL 372 (509)
T ss_pred eeecCCcccCCHHHHHHHHHHHHHHcC-CCEEEEcCH
Confidence 1 11 222334445554432 356888986
No 250
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.53 E-value=4.8e-05 Score=57.55 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=29.7
Q ss_pred HHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHH
Q 032438 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIK 53 (141)
Q Consensus 20 ~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La 53 (141)
.++..++...+++..+.|+||+||||||+...++
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3456667778899999999999999999999998
No 251
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.52 E-value=9.5e-05 Score=57.37 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=24.6
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDML 67 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll 67 (141)
+-|+|+|.|||||||+|+.|++.+ .+.+++.+++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~ 41 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG 41 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 368999999999999999999864 45667755555
No 252
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00013 Score=61.14 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=29.8
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
+++.....+-+..++|+||||+||||+|+.+++.+.+
T Consensus 26 L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 26 LLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4444445666777899999999999999999998864
No 253
>PRK08116 hypothetical protein; Validated
Probab=97.51 E-value=0.00044 Score=53.52 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=33.4
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAV 71 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~ 71 (141)
.+..++|.|+||+|||+++..++..+ .+.+++..+++....
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK 158 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 34569999999999999999999864 456788888887653
No 254
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.51 E-value=8.9e-05 Score=56.73 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=36.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHH
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAV 71 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~ 71 (141)
++.-+....++...++|.|+||||||+++..++... .+.++++++--.+..
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~ 67 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELL 67 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHH
Confidence 333344557788899999999999999999888543 366777765554443
No 255
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.50 E-value=0.0001 Score=49.13 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEECCCCCChhhHHHHHHhhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~ 56 (141)
+|+|+|++||||||+.+.|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999654
No 256
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.50 E-value=0.00013 Score=57.78 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++.+|.|+||+|+||||++..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999999999999765
No 257
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.50 E-value=0.00018 Score=53.65 Aligned_cols=52 Identities=19% Similarity=0.097 Sum_probs=41.6
Q ss_pred CchhHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchH
Q 032438 13 PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (141)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~ 64 (141)
.++-.+.++++-+.....++..+.|.|+||+|||+++..++... ++.+++.+
T Consensus 4 ~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 4 RLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred cccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34556777888777677888999999999999999999998532 46677776
No 258
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.50 E-value=9.2e-05 Score=64.56 Aligned_cols=40 Identities=28% Similarity=0.517 Sum_probs=32.0
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCcccc--chHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLR 68 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~i--s~~~ll~ 68 (141)
..+|..|++.||||+|||++|+.+|...+..++ +..+++.
T Consensus 484 ~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 484 IRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 456778999999999999999999998876554 4445544
No 259
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.50 E-value=9e-05 Score=62.18 Aligned_cols=30 Identities=33% Similarity=0.616 Sum_probs=26.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
.++|..++|.||||+|||++++.++..++.
T Consensus 213 l~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 213 LKPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 467889999999999999999999998753
No 260
>PHA02244 ATPase-like protein
Probab=97.50 E-value=0.00013 Score=59.02 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=31.1
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLR 68 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~ 68 (141)
+..|+|.||||+|||++++.++..++.+++.+..+..
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d 155 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMD 155 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChH
Confidence 3458899999999999999999999988877765543
No 261
>CHL00176 ftsH cell division protein; Validated
Probab=97.50 E-value=0.00011 Score=63.34 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=29.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccch
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~ 63 (141)
...|..++|.||||+|||++|+.+|...+.+++.+
T Consensus 213 ~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 213 AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 34577899999999999999999999888665543
No 262
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.49 E-value=8.5e-05 Score=49.56 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=19.8
Q ss_pred EEEECCCCCChhhHHHHHHhhh
Q 032438 35 LILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 35 I~i~G~pgsGKstla~~La~~~ 56 (141)
|+|.|+||+|||++++.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998654
No 263
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=9.7e-05 Score=61.49 Aligned_cols=43 Identities=26% Similarity=0.411 Sum_probs=32.8
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccc--cchHHHHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRAA 70 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~--is~~~ll~~~ 70 (141)
+..++..+++.||||+|||.+|+.+|..++..+ ++..+++..+
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~ 316 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKW 316 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccc
Confidence 346677999999999999999999999666554 4444555443
No 264
>PRK05642 DNA replication initiation factor; Validated
Probab=97.49 E-value=0.00026 Score=53.65 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=31.2
Q ss_pred CeEEEEECCCCCChhhHHHHHHhh-----hCccccchHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDE-----YCLCHLATGDMLRA 69 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~-----~~~~~is~~~ll~~ 69 (141)
...++|.|++|+|||++++.++.. ..+.+++.+++...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR 87 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence 357899999999999999998743 46778999888754
No 265
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.48 E-value=0.00017 Score=56.01 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=27.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh---C--ccccchH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATG 64 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~---~--~~~is~~ 64 (141)
.++.+|.++|++|+||||++..||..+ | +..++.|
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 446789999999999999999999765 2 4445555
No 266
>PRK06620 hypothetical protein; Validated
Probab=97.47 E-value=0.00012 Score=54.84 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=25.8
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
..++|.||||||||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 579999999999999999999887765544
No 267
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.47 E-value=2.2e-05 Score=59.69 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=30.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 56677777788999999999999999999999843
No 268
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.47 E-value=0.00019 Score=56.22 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=32.1
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...+++.+.....++..|.|+|+|||||||++..++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 455667776666778999999999999999999988754
No 269
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.00011 Score=57.35 Aligned_cols=31 Identities=35% Similarity=0.592 Sum_probs=26.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
+...-.+++.||||.||||+|..+|.++|..
T Consensus 49 ~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 49 GEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 3445699999999999999999999999754
No 270
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.47 E-value=0.00011 Score=59.97 Aligned_cols=33 Identities=33% Similarity=0.388 Sum_probs=26.8
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
......++|.||||+||||+|+.+++..+..++
T Consensus 33 ~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~ 65 (413)
T PRK13342 33 AGRLSSMILWGPPGTGKTTLARIIAGATDAPFE 65 (413)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 344557899999999999999999998765543
No 271
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.00019 Score=59.98 Aligned_cols=38 Identities=32% Similarity=0.336 Sum_probs=29.8
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
+++....++-+..+++.||||+||||+|+.+|+.+++.
T Consensus 25 L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 25 LRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 33433345667789999999999999999999987653
No 272
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.47 E-value=6.3e-05 Score=57.35 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=32.0
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHH
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIK 53 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La 53 (141)
..+++.+++...++.++-|+|++||||||+++.|+
T Consensus 20 ~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHh
Confidence 35778888888999999999999999999999999
No 273
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.46 E-value=0.00014 Score=55.09 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=28.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhC-----ccccchHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDM 66 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~l 66 (141)
..+..++|.||||+|||++++.++.... +.++++++.
T Consensus 43 ~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 43 EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 3446899999999999999999987653 566666653
No 274
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.46 E-value=0.00015 Score=52.60 Aligned_cols=25 Identities=40% Similarity=0.769 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+..|+|+||+||||+|+++.|.+.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5678999999999999999999865
No 275
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.45 E-value=4.4e-05 Score=56.74 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=30.3
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++..+.|+|++||||||+.+.|+..
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777788999999999999999999999943
No 276
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.44 E-value=0.00013 Score=62.66 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=33.3
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLR 68 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~ 68 (141)
...+|..|+++|.|||||||+|+.|++++ ++.+++-|++-.
T Consensus 456 ~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 456 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred hCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 34468899999999999999999999986 356777777554
No 277
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.44 E-value=0.00097 Score=54.22 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=31.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh-------CccccchHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAAV 71 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~-------~~~~is~~~ll~~~~ 71 (141)
..++|.|+||+|||++++.++..+ .+.+++..++..+..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~ 182 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFV 182 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHH
Confidence 458999999999999999998654 366788888776543
No 278
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00064 Score=55.35 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.|.+|+++||+|+||||.+..||..|
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999765
No 279
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.43 E-value=0.00023 Score=60.55 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=25.7
Q ss_pred hcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 27 ~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
....+..++++.||||+||||+++.|++.+
T Consensus 98 gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 98 GLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 345566799999999999999999999855
No 280
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.43 E-value=7.6e-05 Score=54.32 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=29.7
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566667788899999999999999999999853
No 281
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.43 E-value=0.00018 Score=61.40 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=31.2
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh-CccccchHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDM 66 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~-~~~~is~~~l 66 (141)
..++..|.|.|++||||||+++.|+..+ +...+++|+.
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 4456899999999999999999999877 4556777765
No 282
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=9.3e-05 Score=63.89 Aligned_cols=42 Identities=31% Similarity=0.479 Sum_probs=35.9
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhC--ccccchHHHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRA 69 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~--~~~is~~~ll~~ 69 (141)
....++++++.||||+|||++++.+|+.+| +..+|++-+-..
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDv 477 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDV 477 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccH
Confidence 456688999999999999999999999986 667888877654
No 283
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.42 E-value=0.00068 Score=55.96 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=32.1
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh-------CccccchHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAAV 71 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~-------~~~~is~~~ll~~~~ 71 (141)
..++|.|+||+|||++++.++..+ .+.+++..+++.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~ 176 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV 176 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 359999999999999999999763 467788888877654
No 284
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.42 E-value=0.0002 Score=52.21 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=24.5
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..++...++|.|++||||||+.+.|...+
T Consensus 21 ~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34557799999999999999999998654
No 285
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.42 E-value=8.1e-05 Score=55.07 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=30.3
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55667777788999999999999999999999854
No 286
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.42 E-value=0.00017 Score=53.92 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=38.0
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHH
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAV 71 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~ 71 (141)
..+++-+....+++..++|.|+||+|||+++..++... .+.++++++-..+..
T Consensus 3 ~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~ 60 (224)
T TIGR03880 3 PGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERIL 60 (224)
T ss_pred hhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 34555565567788899999999999999999887532 355666665444433
No 287
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.42 E-value=0.0003 Score=55.51 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=34.4
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVA 72 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~~ 72 (141)
....++|.|++|+|||+++..++..+ .+.++++.+++.+...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 45789999999999999999999765 3567788888877543
No 288
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.00032 Score=60.50 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=30.4
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
+.+.....+.+..++|.||||+||||+|+.+|+.+++.
T Consensus 27 L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 27 LSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 33333345667788999999999999999999998763
No 289
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.42 E-value=0.0003 Score=53.89 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh--h----C-ccccchH------HHHHHHHHccCcchHHHHH
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE--Y----C-LCHLATG------DMLRAAVAAKTPLGIKAKE 83 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~--~----~-~~~is~~------~ll~~~~~~~~~~g~~i~~ 83 (141)
.++++.+.+.....+..+|.|.|++|+||||+|..+++. . + +.+++.+ ++... +..
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~-----------i~~ 72 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQ-----------ILR 72 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHH-----------HHH
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccc-----------ccc
Confidence 345666666654477889999999999999999999976 2 1 2222222 22222 222
Q ss_pred HhhcC-----CcchHHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHhcc
Q 032438 84 AMDKG-----ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKVS 129 (141)
Q Consensus 84 ~l~~g-----~~ip~~~~~~ll~~~l~~~~~~~g~IldG~P~~~~q~~~l~ 129 (141)
.+... .....+...+.+.+.+.+. ..-+|+|+. .+..+++.+.
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~LlVlDdv-~~~~~~~~l~ 120 (287)
T PF00931_consen 73 QLGEPDSSISDPKDIEELQDQLRELLKDK--RCLLVLDDV-WDEEDLEELR 120 (287)
T ss_dssp HHTCC-STSSCCSSHHHHHHHHHHHHCCT--SEEEEEEEE--SHHHH----
T ss_pred cccccccccccccccccccccchhhhccc--cceeeeeee-cccccccccc
Confidence 22222 1223344667777777665 457899987 3444554443
No 290
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.41 E-value=0.00012 Score=68.76 Aligned_cols=39 Identities=13% Similarity=0.347 Sum_probs=33.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCcc--ccchHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDMLR 68 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~--~is~~~ll~ 68 (141)
.+|+.|+++||||+|||.+|+.||...+++ .++..+++.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 568899999999999999999999988765 467777774
No 291
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.41 E-value=0.00024 Score=48.96 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=25.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
+++..|++.|+-||||||+++.+++.+|..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 667899999999999999999999988754
No 292
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00036 Score=55.28 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=36.8
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCcc--ccchHHHHHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAV 71 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~--~is~~~ll~~~~ 71 (141)
+.++|+.++|.||||.|||-+|+.++..+|+. .++.+++....+
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 46889999999999999999999999999754 566777776654
No 293
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=8.5e-05 Score=54.96 Aligned_cols=35 Identities=31% Similarity=0.484 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|+.||||||+.+.|+..
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777788999999999999999999999853
No 294
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.40 E-value=7e-05 Score=57.69 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=31.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++++.+++..+.|+||.||||||+.+.|+.-+
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 456677788889999999999999999999999644
No 295
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.40 E-value=8e-05 Score=55.04 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=30.1
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45666667788999999999999999999999954
No 296
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.40 E-value=0.0017 Score=49.00 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=35.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHHHc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAA 73 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~~~ 73 (141)
...+.+|++.|.|+.|||++|++|++-+ ...++++++.-|.....
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~ 58 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGA 58 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccc
Confidence 4456799999999999999999999755 47789999999987653
No 297
>PRK06893 DNA replication initiation factor; Validated
Probab=97.39 E-value=0.00021 Score=53.89 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=27.6
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh-----CccccchH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~ 64 (141)
..+.++|.||||+|||++++.++..+ +..+++..
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34578999999999999999999765 56666665
No 298
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.00033 Score=57.03 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=27.2
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
+++-+.-+++.||||+||||+|+.+|+.+.+.
T Consensus 34 ~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 34 MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34556679999999999999999999988763
No 299
>PLN03025 replication factor C subunit; Provisional
Probab=97.38 E-value=0.00026 Score=55.84 Aligned_cols=26 Identities=42% Similarity=0.636 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..+.++|.||||+||||+++.+++.+
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33468999999999999999999886
No 300
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.38 E-value=0.00015 Score=63.18 Aligned_cols=33 Identities=30% Similarity=0.573 Sum_probs=28.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
..++..|+|.||||+|||++++.++..++..++
T Consensus 209 i~~~~giLL~GppGtGKT~laraia~~~~~~~i 241 (733)
T TIGR01243 209 IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFI 241 (733)
T ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCeEE
Confidence 356789999999999999999999998875544
No 301
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.37 E-value=7.5e-05 Score=55.86 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=31.1
Q ss_pred HHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 20 ~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 456777777788999999999999999999999854
No 302
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.37 E-value=9e-05 Score=54.69 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=29.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45566666788899999999999999999999954
No 303
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.37 E-value=6e-05 Score=55.48 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=31.1
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++...+++.++.|+|++||||||+.+.|+..+
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 556777778899999999999999999999998543
No 304
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.37 E-value=8.5e-05 Score=54.97 Aligned_cols=35 Identities=34% Similarity=0.495 Sum_probs=29.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++..++....++.++.|+|++||||||+.+.|+..
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45566667788999999999999999999999854
No 305
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.37 E-value=0.00047 Score=56.89 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=31.2
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh-------CccccchHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAAV 71 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~-------~~~~is~~~ll~~~~ 71 (141)
..++|.|+||+|||++++.++..+ .+.+++..++..+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~ 194 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV 194 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 458999999999999999999765 256788888766543
No 306
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.37 E-value=7.4e-05 Score=55.43 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 455666677888999999999999999999998543
No 307
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.36 E-value=9.1e-05 Score=55.47 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=29.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+++.++...+++.++.|+|++||||||+.+.|+-
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4566677778899999999999999999999994
No 308
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.36 E-value=8.1e-05 Score=55.00 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..++....++.++.|+|++||||||+.+.|+..+
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455666667888999999999999999999999543
No 309
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.35 E-value=0.00011 Score=55.48 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777788999999999999999999999843
No 310
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.35 E-value=0.0003 Score=50.71 Aligned_cols=36 Identities=28% Similarity=0.553 Sum_probs=29.2
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
|..+++++. ..++..+|+++|++||||||+.+.|..
T Consensus 1 ~~~~~~~~~-~~~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 1 FSSVLSKLK-SKKKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp HHHHHHHCT-TTTSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred CHHHHHHhc-ccCcEEEEEEECCCccchHHHHHHhhh
Confidence 345566665 347778999999999999999999985
No 311
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.35 E-value=0.00054 Score=56.83 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=39.9
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHH
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAA 70 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~ 70 (141)
+.+++.-+.....++..++|.|+||+||||++..++... ++.+++.++-..+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 455565555567888999999999999999999987643 35677777665543
No 312
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.35 E-value=9.9e-05 Score=54.50 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.+++...++.++.|+|++||||||+.+.|+-.
T Consensus 15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556666788999999999999999999999943
No 313
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.35 E-value=0.00021 Score=51.17 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=24.6
Q ss_pred EEEEECCCCCChhhHHHHHHhhh---C--ccccchH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY---C--LCHLATG 64 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~---~--~~~is~~ 64 (141)
+++++|+||+||||++..++..+ | +..++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 57899999999999999998765 3 4445555
No 314
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.34 E-value=7.6e-05 Score=55.35 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=30.0
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..++....++.++.|+|++||||||+.+.|+..+
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445566667888999999999999999999999543
No 315
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.34 E-value=0.00036 Score=61.32 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=26.6
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
+++.+++.||||+|||++|+.||+.++..++
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 4568999999999999999999999875543
No 316
>PRK10646 ADP-binding protein; Provisional
Probab=97.34 E-value=0.00065 Score=48.49 Aligned_cols=42 Identities=24% Similarity=0.149 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
-...+-+.+...-+++.+|++.|.-|+||||+++.+++.+|+
T Consensus 13 ~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 13 ATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 334444555544566779999999999999999999999885
No 317
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.34 E-value=3.1e-05 Score=53.18 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=25.7
Q ss_pred hcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 27 ~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...+++.++.|+|++||||||+.+.|+..+
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccc
Confidence 345678899999999999999999999654
No 318
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.34 E-value=0.00017 Score=59.22 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=31.1
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC-----ccccchHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDML 67 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~ll 67 (141)
..+|.+|-|.|++||||||+++.|...+. ...+++|++.
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 44788999999999999999999986552 5567777665
No 319
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00019 Score=52.73 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
.+..|+|.||+|+||||+.+.|-+..+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~ 29 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK 29 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC
Confidence 567899999999999999999998763
No 320
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.34 E-value=0.0001 Score=55.33 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=27.4
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.++....++.++.|+|++||||||+.+.|+..
T Consensus 4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44556678899999999999999999999953
No 321
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.34 E-value=0.00011 Score=50.96 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=19.5
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
.++|.|+||.|||++++.+|+.+|..+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f 27 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSF 27 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--E
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCce
Confidence 378999999999999999999887544
No 322
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0002 Score=56.89 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=26.9
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
.-+|+++||.|||||.+|+-||+.+++++-
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFa 126 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFA 126 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 348999999999999999999999987764
No 323
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.33 E-value=0.00027 Score=52.09 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=32.3
Q ss_pred hhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHH
Q 032438 25 MKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGD 65 (141)
Q Consensus 25 ~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ 65 (141)
+....+++..+.|.|+||||||+++..++... .+.+++.++
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44567778999999999999999999988543 366677654
No 324
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00042 Score=54.43 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=32.6
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..+++..+.-...++.+|=|+|+||+||||+...|..+|
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 356666666556777899999999999999999999877
No 325
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.33 E-value=9.6e-05 Score=55.47 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=29.5
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 34566666788899999999999999999999843
No 326
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.00041 Score=61.53 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=35.9
Q ss_pred cCCCCchhHH--HHHH---HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 9 LEDVPSVDLM--TELL---RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 9 ~~~~~~~~~~--~~~~---~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
..|..+.|++ +.+. ++....++-+..++|+||||+||||+|+.|++.+++.
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 3455555555 3333 3333344556678999999999999999999998764
No 327
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.00044 Score=58.14 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=28.1
Q ss_pred hcCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 27 ~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
..++-+.-+++.||||+||||+|+.+|+.+++.
T Consensus 33 ~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 33 DQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 345556778999999999999999999998764
No 328
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=7.9e-05 Score=55.03 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=28.7
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+.+++...++.++.|+|++||||||+.+.|+..
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3455666778899999999999999999999943
No 329
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.32 E-value=8.8e-05 Score=55.11 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34566667788999999999999999999999843
No 330
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.32 E-value=9.4e-05 Score=54.46 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=29.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45566666788899999999999999999999853
No 331
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00017 Score=54.75 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=30.9
Q ss_pred HHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 20 ~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
++++.++-..+++..-.|+||.||||||++..|+-
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G 52 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG 52 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 66777777788899999999999999999999993
No 332
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00011 Score=54.62 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=29.7
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|+.||||||+.+.|+-.
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44566666788899999999999999999999953
No 333
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.00047 Score=58.16 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=27.4
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
..+-+.-++|+||||+||||+|+.+++.+++.
T Consensus 34 ~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 34 QQRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45556678999999999999999999998763
No 334
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.32 E-value=9.1e-05 Score=54.43 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=29.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..+++...++.++.|+|++||||||+.+.|+-.+
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345666667788999999999999999999999543
No 335
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.0002 Score=50.88 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=28.6
Q ss_pred ECCCCCChhhHHHHHHhhhCccccchHHHHH
Q 032438 38 VGPPGSGKGTQSPIIKDEYCLCHLATGDMLR 68 (141)
Q Consensus 38 ~G~pgsGKstla~~La~~~~~~~is~~~ll~ 68 (141)
+|..||||||+++.||+++|..+++-|+|--
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp 31 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHP 31 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCC
Confidence 5899999999999999999999999998864
No 336
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.00049 Score=58.27 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=26.2
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
..+-+..++|+||||+||||+|+.+|+.+++
T Consensus 34 ~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 34 TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445566899999999999999999998865
No 337
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.32 E-value=0.00012 Score=54.59 Aligned_cols=36 Identities=33% Similarity=0.353 Sum_probs=30.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456667777889999999999999999999999543
No 338
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.32 E-value=0.00012 Score=54.78 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.+++...++.++.|+|++||||||+.+.|+..
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45566666788899999999999999999999943
No 339
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=8.5e-05 Score=55.82 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=30.0
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+-.
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45666777788899999999999999999999954
No 340
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.31 E-value=0.00011 Score=55.39 Aligned_cols=35 Identities=31% Similarity=0.482 Sum_probs=29.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34566667788999999999999999999999954
No 341
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.31 E-value=0.0003 Score=52.62 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=29.7
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+++-+....+++..+.|.|+||||||+++..++.
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~ 41 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAV 41 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445555555778889999999999999999999973
No 342
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.31 E-value=0.00024 Score=50.48 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=26.7
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~ 64 (141)
..-++|+|++|+||||++..|.++ |...++-|
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 568999999999999999998876 66666555
No 343
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.31 E-value=0.00011 Score=55.05 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=30.3
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455666677889999999999999999999999543
No 344
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.31 E-value=0.00028 Score=53.22 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=27.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
.+.|..++|.|+||+||||+|+.++.+ ..+++.+..
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~ 44 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMS 44 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCCC--CEEEecccc
Confidence 344678999999999999999999732 455555553
No 345
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.30 E-value=0.00065 Score=46.98 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.6
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..++|.++.+.|+||+||+.+++.||+.+
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 35678899999999999999999999873
No 346
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00017 Score=57.93 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=34.8
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccc--cchHHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRAAV 71 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~--is~~~ll~~~~ 71 (141)
-+|++.|++.||||+|||-+|+.+|++-|... ++++.+..+++
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 46789999999999999999999999987655 55556665554
No 347
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=9.2e-05 Score=55.64 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=29.5
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556666788899999999999999999999943
No 348
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.0001 Score=55.39 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566667788999999999999999999999843
No 349
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.00011 Score=55.49 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=29.7
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+-.
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566667788899999999999999999999953
No 350
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.30 E-value=0.00013 Score=55.35 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.+++...++.++.|+|++||||||+.+.|+-.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45667777788999999999999999999999844
No 351
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.30 E-value=0.00015 Score=56.25 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=27.5
Q ss_pred EEEEECCCCCChhhHHHHHHhhh---CccccchHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDML 67 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~---~~~~is~~~ll 67 (141)
.|.|+|++||||||+++.|+..+ +..+++.+++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 36799999999999999999776 45567777654
No 352
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.30 E-value=0.0001 Score=55.53 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+-.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556667788999999999999999999999943
No 353
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.29 E-value=0.00012 Score=54.73 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445666677889999999999999999999999543
No 354
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00016 Score=54.03 Aligned_cols=36 Identities=31% Similarity=0.610 Sum_probs=30.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++...+++.++.|+|++||||||+.+.|+..+
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 566777778888999999999999999999999543
No 355
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.29 E-value=0.00029 Score=47.39 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=27.9
Q ss_pred hcCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHH
Q 032438 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (141)
Q Consensus 27 ~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll 67 (141)
...++...+.|.||+||||||+++.+. . |-..+.-+++.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~-~-G~i~~~g~di~ 48 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI-K-RKHRLVGDDNV 48 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh-C-CeEEEeeEeHH
Confidence 344566899999999999999999987 2 32334444443
No 356
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.29 E-value=0.00011 Score=54.95 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=30.4
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+-.+
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455666667889999999999999999999999654
No 357
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00011 Score=54.20 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=27.5
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++ ++.|+|++||||||+.+.|+..
T Consensus 15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 345556656667 9999999999999999999943
No 358
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00029 Score=61.74 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=29.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccc--cchHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDML 67 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~--is~~~ll 67 (141)
|...+++.||||+|||++|+.||+.++..+ +++.+..
T Consensus 487 p~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~ 525 (758)
T PRK11034 487 PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhc
Confidence 334799999999999999999999987554 4555543
No 359
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.29 E-value=0.00013 Score=56.10 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=31.2
Q ss_pred hhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchH
Q 032438 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (141)
Q Consensus 26 ~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~ 64 (141)
....+++..++|.|+||+|||++|..++... .+.+++.+
T Consensus 30 ~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 30 LGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4567788899999999999999999987532 46677765
No 360
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.29 E-value=0.00022 Score=50.33 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.8
Q ss_pred eEEEEECCCCCChhhHHHHHHhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~ 55 (141)
++|.|+|++|||||||++.|-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999853
No 361
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.28 E-value=0.00022 Score=49.36 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=26.4
Q ss_pred EEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLR 68 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~ 68 (141)
+++|.|+||+||||++..++... .+.+++.+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 37899999999999999998765 245566554443
No 362
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.00012 Score=55.98 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=30.1
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++...+++.++.|+|++||||||+.+.|+..
T Consensus 28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45666777788999999999999999999999954
No 363
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=9.3e-05 Score=55.09 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=29.4
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34556666788899999999999999999999853
No 364
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.28 E-value=0.00015 Score=53.87 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=30.5
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56667777788999999999999999999999954
No 365
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.28 E-value=0.00034 Score=50.90 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++.+.|+|++||||||+++.|...+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45689999999999999999998665
No 366
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.28 E-value=0.00015 Score=53.84 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=30.1
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45666777788899999999999999999999954
No 367
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.27 E-value=0.00011 Score=54.68 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++..++....++.++.|+|++||||||+.+.|+..
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44556666788899999999999999999999854
No 368
>PRK05973 replicative DNA helicase; Provisional
Probab=97.27 E-value=0.00028 Score=53.80 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=31.0
Q ss_pred hhcCCCCeEEEEECCCCCChhhHHHHHHhhh---C--ccccchHHH
Q 032438 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDM 66 (141)
Q Consensus 26 ~~~~~~~~~I~i~G~pgsGKstla~~La~~~---~--~~~is~~~l 66 (141)
..+..++..++|.|+||+|||+++..++... | +.++++++-
T Consensus 58 ~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 58 FSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred cCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 3456778899999999999999999887533 3 556666543
No 369
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.27 E-value=0.00043 Score=60.91 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=27.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
..+++.+++.||||+||||+++.+++.++..+
T Consensus 346 ~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 346 KIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 34667899999999999999999999887554
No 370
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.00014 Score=55.20 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=30.0
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+-.
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45566777788999999999999999999999954
No 371
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=97.26 E-value=0.00028 Score=55.10 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=33.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCcccc---chHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL---ATGDMLR 68 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~i---s~~~ll~ 68 (141)
.-+++.|++.|+.|||||++|+.||+++|+.|+ .++++.-
T Consensus 68 ~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyv 110 (393)
T KOG3877|consen 68 HENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYV 110 (393)
T ss_pred cccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceee
Confidence 455789999999999999999999999998875 4555443
No 372
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.26 E-value=0.00013 Score=54.32 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=27.2
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+.+++...++.++.|+|++||||||+.+.|+.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34555667788999999999999999999994
No 373
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.26 E-value=0.00033 Score=51.87 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
|..|.|+|++||||||+.+.+.+.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998764
No 374
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.26 E-value=0.00013 Score=55.33 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=29.8
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45666677889999999999999999999999543
No 375
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.26 E-value=0.00017 Score=51.70 Aligned_cols=36 Identities=33% Similarity=0.641 Sum_probs=30.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..++....++..+.|+|++||||||+.+.|+-.+
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456667777889999999999999999999999543
No 376
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.26 E-value=0.00015 Score=54.35 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=30.4
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.+++..+++.++.|+|++||||||+.+.|+-.+
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456666777889999999999999999999998543
No 377
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.25 E-value=0.00017 Score=55.99 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=28.1
Q ss_pred EEEEECCCCCChhhHHHHHHhhhC-----ccccchHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLR 68 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~ll~ 68 (141)
+|.|+|++||||||+++.|++.++ ..+++.|+.-+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 478999999999999999998763 45677666655
No 378
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.00064 Score=58.09 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=27.2
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
.++-+.-+++.||+|+||||+|+.+|+.+.+.
T Consensus 34 ~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 34 NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34556679999999999999999999988654
No 379
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.25 E-value=0.00012 Score=52.82 Aligned_cols=36 Identities=25% Similarity=0.511 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455666677889999999999999999999999543
No 380
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.25 E-value=0.0003 Score=51.89 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhhHHHHHHhhhC
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~ 57 (141)
.|+|.||+||||||+.+.+...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999998887653
No 381
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.25 E-value=0.00014 Score=52.92 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=26.9
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHH
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIK 53 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La 53 (141)
+.++....++.++.|+||+||||||+.+.+.
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556667888999999999999999999885
No 382
>PRK13695 putative NTPase; Provisional
Probab=97.25 E-value=0.00032 Score=50.44 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.2
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.+|+|+|+||+||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999987654
No 383
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.00013 Score=52.39 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=29.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++..+.|+|++||||||+.+.|+..
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45566666788899999999999999999999854
No 384
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.24 E-value=0.00015 Score=52.50 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=30.7
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..++....++..+.|+|++||||||+.+.|+..+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456667777888999999999999999999999543
No 385
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.00018 Score=54.19 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=37.0
Q ss_pred CCCCchhHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 10 EDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.++++-+--.+.++.++...++..+..++||+||||||+.+.|-+.
T Consensus 11 ~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 11 RDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred cceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhh
Confidence 3455555556778888877888889999999999999999998653
No 386
>COG4639 Predicted kinase [General function prediction only]
Probab=97.24 E-value=0.0018 Score=46.39 Aligned_cols=36 Identities=25% Similarity=0.124 Sum_probs=28.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
..+++.|+|||||||+++..-. ....++++++-...
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~~--~~~~lsld~~r~~l 38 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENFL--QNYVLSLDDLRLLL 38 (168)
T ss_pred eEEEEecCCCCchhHHHHHhCC--CcceecHHHHHHHh
Confidence 4688999999999999986432 56788888877643
No 387
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00013 Score=55.04 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=29.7
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+-.
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566666788899999999999999999999943
No 388
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.24 E-value=0.00013 Score=53.70 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=29.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45566667788999999999999999999999854
No 389
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.23 E-value=0.00035 Score=54.74 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
+...|+|+|++||||||+++.|.+ .|+..+
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~ 34 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED-LGYYCV 34 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH-cCCeEE
Confidence 345899999999999999999964 465443
No 390
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00028 Score=56.48 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=33.7
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCcccc---------------chHHHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL---------------ATGDMLRAAVA 72 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~i---------------s~~~ll~~~~~ 72 (141)
|++|+++||.|+|||.+|++||+-.|.+++ +++.++|+.++
T Consensus 50 PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve 105 (444)
T COG1220 50 PKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVE 105 (444)
T ss_pred ccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHH
Confidence 889999999999999999999987765554 56677777654
No 391
>PRK14974 cell division protein FtsY; Provisional
Probab=97.23 E-value=0.00036 Score=55.76 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+|.+|+++|+||+||||++..|+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47799999999999999888888654
No 392
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.00054 Score=58.79 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=30.5
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
+++.....+-+.-++|+|++|+||||+++.|++.+++.
T Consensus 28 L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 28 LTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34444455667788999999999999999999998763
No 393
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.00014 Score=55.00 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=29.7
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44566666788899999999999999999999954
No 394
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.23 E-value=0.0002 Score=53.45 Aligned_cols=35 Identities=31% Similarity=0.555 Sum_probs=30.5
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++...+++.++.|+|+.||||||+.+.|+..
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56677777788999999999999999999999954
No 395
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.23 E-value=0.00013 Score=54.52 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=29.7
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.+++...++.++.|+|++||||||+.+.|+..
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 34566667788999999999999999999999954
No 396
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.23 E-value=0.0002 Score=53.17 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=30.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.+++...++..+.|+|++||||||+.+.|+-.
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 56677777788999999999999999999999854
No 397
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.23 E-value=0.00013 Score=55.83 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=29.7
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++..++....++.++.|+|++||||||+.+.|+..
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44566667788999999999999999999999943
No 398
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.00015 Score=54.98 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=30.1
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+-.
T Consensus 19 ~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 45666777788899999999999999999999943
No 399
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.23 E-value=0.00015 Score=60.73 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=31.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++...+++.++.|+|++||||||+++.|..-|
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 566666677889999999999999999999999665
No 400
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.23 E-value=0.00033 Score=56.39 Aligned_cols=44 Identities=23% Similarity=0.474 Sum_probs=32.8
Q ss_pred hhhcCCCCeEEEEECCCCCChhhHHHHHHhhhC----ccccchHHHHH
Q 032438 25 MKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC----LCHLATGDMLR 68 (141)
Q Consensus 25 ~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~----~~~is~~~ll~ 68 (141)
+.-.-..+..|++.||||+|||.+|-.+|+.+| +.-++-+++..
T Consensus 58 ik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 58 IKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred HHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 333335578999999999999999999999997 33444444443
No 401
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.23 E-value=0.00013 Score=55.71 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=30.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.+++...++.++.|+|++||||||+.+.|+..+
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456667778899999999999999999999999543
No 402
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.00014 Score=55.26 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=30.1
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45566667788999999999999999999999954
No 403
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.22 E-value=0.00014 Score=53.58 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=29.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++...+++.++.|+|++||||||+.+.|+..
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34566677788999999999999999999999954
No 404
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.22 E-value=0.00014 Score=53.60 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=29.4
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.+++...++.++.|+|++||||||+.+.|+..
T Consensus 15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44556666778899999999999999999999843
No 405
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.00013 Score=53.44 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=28.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+++.++....++.++.|+|++||||||+.+.|+-
T Consensus 22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3455666667889999999999999999999994
No 406
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.22 E-value=0.00016 Score=51.86 Aligned_cols=35 Identities=31% Similarity=0.614 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45556666788899999999999999999999854
No 407
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.22 E-value=0.00016 Score=53.71 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=30.3
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.+.++....++.++.|+|++||||||+.+.|+..+
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 456666677888999999999999999999999543
No 408
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.22 E-value=0.00018 Score=54.55 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45666777788999999999999999999999843
No 409
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.22 E-value=0.00018 Score=53.46 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=30.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.+.++....++.++.|+|++||||||+.+.|+-.+
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 556677777889999999999999999999999543
No 410
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.21 E-value=0.00015 Score=54.97 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=29.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+++.+++..+++.++.|+|++||||||+.+.|+.
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4566677778899999999999999999999985
No 411
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0023 Score=49.74 Aligned_cols=47 Identities=17% Similarity=0.449 Sum_probs=37.0
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhC--ccccchHHHHHHHHHcc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAK 74 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~--~~~is~~~ll~~~~~~~ 74 (141)
+..||..+++.||||+|||-+++..|.... +..+.-++++.+++-++
T Consensus 185 gidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgeg 233 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG 233 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC
Confidence 478889999999999999999999998764 44455667777665443
No 412
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.00015 Score=54.97 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=29.3
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+++.++....++.++.|+|++||||||+.+.|+.
T Consensus 18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3556666778899999999999999999999994
No 413
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.21 E-value=0.00015 Score=53.61 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=29.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++...+++.++.|+|++||||||+.+.|+..
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35566667788999999999999999999999954
No 414
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.00017 Score=54.78 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=30.1
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45666777788999999999999999999999954
No 415
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.20 E-value=0.00055 Score=48.38 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=23.0
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|++||||||+.+.+...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Confidence 44678999999999999999999864
No 416
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.20 E-value=0.00016 Score=54.52 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=29.7
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45566666788999999999999999999999954
No 417
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.20 E-value=0.00089 Score=57.33 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=31.6
Q ss_pred EEEEECCCCCChhhHHHHHHhhh-------CccccchHHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAAV 71 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~-------~~~~is~~~ll~~~~ 71 (141)
.++|.|++|+|||.|+..++... .+.+++..+++.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence 48999999999999999999753 467899988886654
No 418
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.00018 Score=54.59 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=29.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+++.++....++.++.|+|++||||||+.+.|+-
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4566677778899999999999999999999984
No 419
>PRK10908 cell division protein FtsE; Provisional
Probab=97.20 E-value=0.00015 Score=54.04 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=30.0
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..++....++.++.|+|++||||||+.+.|+-.+
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566667889999999999999999999999543
No 420
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.20 E-value=0.0009 Score=52.79 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=25.8
Q ss_pred hhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 25 MKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 25 ~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+.....++..+.|.|+||||||++|..++-.
T Consensus 95 l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 95 LGGGIETQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred hcCCccCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3334567889999999999999999999854
No 421
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=9.5e-05 Score=56.17 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.3
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++..+.|+|++||||||+.+.|+..
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34555666778899999999999999999999943
No 422
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.00015 Score=55.13 Aligned_cols=34 Identities=29% Similarity=0.578 Sum_probs=29.0
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
++..+++...+...++|+|++||||||+.+.|+-
T Consensus 19 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4456666778889999999999999999999983
No 423
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.20 E-value=0.00028 Score=54.81 Aligned_cols=41 Identities=22% Similarity=0.459 Sum_probs=34.6
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCcc--ccchHHHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVA 72 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~--~is~~~ll~~~~~ 72 (141)
|+.|++.||||.|||-+|+.||.+.+.+ ++...+|+.+.+-
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence 8899999999999999999999988755 5566677777653
No 424
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.00079 Score=53.94 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=26.5
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
....+..++|.||||+||||+++.+++.++.
T Consensus 35 ~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 35 NNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3455678999999999999999999988754
No 425
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.00016 Score=55.21 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=30.0
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45666667788999999999999999999999953
No 426
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.00019 Score=54.41 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=30.3
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45666777788999999999999999999999853
No 427
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.20 E-value=0.00027 Score=51.76 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=26.9
Q ss_pred hhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 25 MKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 25 ~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++....++.++.|+|++||||||+.+.|+..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4555678899999999999999999999954
No 428
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.19 E-value=0.00018 Score=54.07 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=30.1
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.+++...++..+.|+|++||||||+.+.|+-.
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 45666677788999999999999999999999954
No 429
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00079 Score=53.29 Aligned_cols=42 Identities=24% Similarity=0.510 Sum_probs=34.4
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhC--ccccchHHHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVA 72 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~--~~~is~~~ll~~~~~ 72 (141)
|-.-|++.||||.|||.+|+..|.+-+ +.-+|.+||+-.++-
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 165 PWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred cceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 346899999999999999999998876 445677788877653
No 430
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.00014 Score=52.52 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=29.0
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34555666778899999999999999999999843
No 431
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.00017 Score=55.34 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=29.3
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+++.++....++.++.|+|++||||||+.+.|+.
T Consensus 36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4556666678899999999999999999999985
No 432
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.18 E-value=0.00017 Score=54.36 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=29.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|+.||||||+.+.|+..
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34555666678899999999999999999999953
No 433
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.18 E-value=0.00019 Score=53.99 Aligned_cols=36 Identities=33% Similarity=0.537 Sum_probs=30.1
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++..+.|+|++||||||+.+.|+-.+
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 445666667889999999999999999999999543
No 434
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.18 E-value=0.00017 Score=53.76 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=30.4
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455666677889999999999999999999999543
No 435
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.18 E-value=0.00017 Score=54.79 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=29.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+++.++....++.++.|+|++||||||+.+.|+.
T Consensus 20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556666678889999999999999999999984
No 436
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.18 E-value=0.00019 Score=55.20 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=29.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45566666788999999999999999999999954
No 437
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.18 E-value=0.00017 Score=52.23 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=29.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445566667888999999999999999999998543
No 438
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.18 E-value=0.00021 Score=54.30 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=30.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.+++...++.++.|+|++||||||+.+.|+..
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56677777888999999999999999999999853
No 439
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.18 E-value=0.00016 Score=53.00 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=29.4
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++.++....++.++.|+|+.||||||+.+.|+..+
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44556667889999999999999999999998543
No 440
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.17 E-value=0.00019 Score=51.63 Aligned_cols=36 Identities=33% Similarity=0.618 Sum_probs=29.7
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.+.++....++..+.|+|++||||||+.+.|+..+
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345556667788999999999999999999999543
No 441
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00014 Score=53.61 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 455666667888999999999999999999999543
No 442
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.17 E-value=0.00021 Score=53.75 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=26.3
Q ss_pred hhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 25 MKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 25 ~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++...++.++.|+|++||||||+.+.|+..
T Consensus 4 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445677889999999999999999999843
No 443
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00039 Score=49.88 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=28.3
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++....-++..|||+|.+||||||+|-.|.+.+
T Consensus 22 eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L 55 (207)
T KOG0635|consen 22 ERQKLLKQKGCVIWITGLSGSGKSTLACALSQAL 55 (207)
T ss_pred HHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHH
Confidence 3444556788999999999999999999998755
No 444
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00054 Score=57.74 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=30.2
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~ 64 (141)
+=|+.|+++||||.|||-+|+.+|-+-|++++...
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s 369 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS 369 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcccCCCeEecc
Confidence 33889999999999999999999988888776543
No 445
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.0002 Score=55.08 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45666777788899999999999999999999843
No 446
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.17 E-value=0.00041 Score=48.65 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.2
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++|.|+|+.+|||||+++.|...+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998765
No 447
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.17 E-value=0.00025 Score=52.28 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=30.3
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred cccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56667777788999999999999999999999854
No 448
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.17 E-value=0.00014 Score=54.47 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=27.9
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++.+++...++.++.|+|++||||||+.+.|+-.
T Consensus 38 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444555677899999999999999999999953
No 449
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.17 E-value=0.00023 Score=52.23 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=30.7
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566667677888999999999999999999999543
No 450
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.00018 Score=54.75 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=29.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+++.++....++.++.|+|++||||||+.+.|+.
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4556666678899999999999999999999983
No 451
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.00018 Score=55.61 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++..++....++.++.|+|++||||||+.+.|+..
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45666777788999999999999999999999854
No 452
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.16 E-value=0.00017 Score=54.48 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=29.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++..++....++.++.|+|++||||||+.+.|+-.
T Consensus 16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45566677788999999999999999999999843
No 453
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.16 E-value=0.00047 Score=53.71 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=27.3
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh-------CccccchHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGD 65 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~-------~~~~is~~~ 65 (141)
++.+|.|+||+|+||||++..|+..+ .+.+++.|.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 45689999999999999999998654 244566664
No 454
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.16 E-value=0.00016 Score=55.26 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=29.5
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45556666788899999999999999999999853
No 455
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.15 E-value=0.00016 Score=51.67 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=29.3
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34555666788999999999999999999999843
No 456
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.15 E-value=0.00036 Score=60.43 Aligned_cols=44 Identities=32% Similarity=0.494 Sum_probs=32.0
Q ss_pred HHHHHh-hhcCCCC-eEEEEECCCCCChhhHHHHHHhhhCccccch
Q 032438 20 ELLRRM-KCASKPD-KRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (141)
Q Consensus 20 ~~~~~~-~~~~~~~-~~I~i~G~pgsGKstla~~La~~~~~~~is~ 63 (141)
++..+. ..+.+|+ ++.+++||||.||||+|..+|+.-|+.++.+
T Consensus 312 e~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 312 EVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred hhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 444333 3345555 4566699999999999999999888777654
No 457
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.15 E-value=0.0006 Score=50.68 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+.++++-+....++...+.|.|+||+|||+++..++..
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 44556656567788899999999999999999999853
No 458
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.0002 Score=53.68 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+-.
T Consensus 16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44556666788899999999999999999999954
No 459
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.15 E-value=0.00019 Score=55.14 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=29.7
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|+.||||||+.+.|+..
T Consensus 27 il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45566666778899999999999999999999954
No 460
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.00016 Score=54.47 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+-.
T Consensus 18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34556666788999999999999999999999954
No 461
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.15 E-value=0.00041 Score=46.31 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEECCCCCChhhHHHHHHh
Q 032438 34 RLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~ 54 (141)
+|+|+|+||+||||+...|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 462
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.15 E-value=0.0008 Score=54.12 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=28.5
Q ss_pred HHHHHHHHhhh--cCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 17 LMTELLRRMKC--ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 17 ~~~~~~~~~~~--~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++++..-+.. ....+..++|.|+||+|||++++.+++.+
T Consensus 38 e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 38 QIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34444444422 23455678999999999999999999765
No 463
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.15 E-value=0.00035 Score=57.80 Aligned_cols=25 Identities=28% Similarity=0.664 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...|+|-|+||+||||+|+.||+-|
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHH
Confidence 4589999999999999999999866
No 464
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.15 E-value=0.0005 Score=56.90 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
...|++.||||+|||++|+.++..++
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 55899999999999999999998774
No 465
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.15 E-value=0.00017 Score=54.77 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=29.4
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556666788999999999999999999999953
No 466
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.14 E-value=0.00078 Score=56.76 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=27.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
+.+..+.+|+||+|+||||..+.|++.+|+.+
T Consensus 107 ~l~~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 107 KLGSRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred CCCceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 34456888999999999999999999998654
No 467
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.14 E-value=0.00051 Score=59.97 Aligned_cols=37 Identities=32% Similarity=0.415 Sum_probs=29.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ 65 (141)
......++|.||||+||||+|+.+++.++..++.++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 3445578999999999999999999988766555443
No 468
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.14 E-value=0.00023 Score=53.96 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=30.4
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45666777788999999999999999999999954
No 469
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.00076 Score=57.57 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=29.8
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
+++...+.+-+.-++|.||+|+||||+|+.+|+.+++.
T Consensus 25 L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 25 LSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 33333345556678999999999999999999988764
No 470
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.14 E-value=0.00022 Score=54.35 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=29.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+-.
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45666667788999999999999999999999843
No 471
>PRK10867 signal recognition particle protein; Provisional
Probab=97.14 E-value=0.00051 Score=56.64 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=27.0
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh----C--ccccchH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY----C--LCHLATG 64 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~----~--~~~is~~ 64 (141)
.+|..|+++|++||||||++..||..+ | +..++.|
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 447899999999999999888888643 2 4556666
No 472
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.14 E-value=0.00092 Score=57.97 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=27.7
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
..+-+..++|+|++|+||||+|+.|++.+++.
T Consensus 34 ~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 34 EGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 45556789999999999999999999988764
No 473
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.00085 Score=57.68 Aligned_cols=38 Identities=18% Similarity=0.377 Sum_probs=29.8
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
+++.....+-+..++|.||||+||||+|+.+|+.+++.
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 34443344446689999999999999999999998764
No 474
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.14 E-value=0.00022 Score=52.46 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45666777788999999999999999999999854
No 475
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.13 E-value=0.00017 Score=55.99 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=30.5
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456667777888999999999999999999998543
No 476
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00032 Score=51.76 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=28.4
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++....++.++.|+|+.||||||+.+.|+..+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 556667889999999999999999999998543
No 477
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.13 E-value=0.0015 Score=46.37 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
+.+...-+++.+|++.|.=||||||+++.+++.+|.
T Consensus 16 ~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 16 ERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred HHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 444444467889999999999999999999999873
No 478
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.00087 Score=57.81 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=27.3
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
.++-+.-++|+|++|+||||+|+.+++.+++.
T Consensus 34 ~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 34 LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 44556668999999999999999999998774
No 479
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.13 E-value=0.00036 Score=58.09 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=28.1
Q ss_pred hHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHH
Q 032438 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSP 50 (141)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~ 50 (141)
.-+..++..++....++..++|+||+||||||+.+
T Consensus 16 ~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 16 TDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 33344456666667889999999999999999999
No 480
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.13 E-value=0.00045 Score=47.62 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCChhhHHHHHHhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+|.++|+|||||||+...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998753
No 481
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.00021 Score=54.28 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++..+.|+|++||||||+.+.|+-.
T Consensus 20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45566666788999999999999999999999843
No 482
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.00023 Score=54.05 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+++.++....++.++.|+|++||||||+.+.|+-
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4566666778899999999999999999999995
No 483
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.0002 Score=55.11 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=28.5
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 40 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445556788999999999999999999998543
No 484
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.13 E-value=0.00029 Score=61.29 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=32.1
Q ss_pred HHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 20 ~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.+++.++...+++.+|.|+|.+||||||+++.|..-|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567777778899999999999999999999999655
No 485
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.00021 Score=54.12 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=29.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+-.
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45666667788899999999999999999999853
No 486
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.12 E-value=0.001 Score=58.32 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=27.6
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
.++-+..++|+|++|+||||+++.|++.+++.
T Consensus 34 ~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 34 GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 45556788999999999999999999998764
No 487
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.12 E-value=0.00021 Score=54.80 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=30.3
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+-.+
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455666677889999999999999999999999543
No 488
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.00021 Score=55.05 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=29.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++..++....++.++.|+|++||||||+.+.|+..
T Consensus 28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45566667788999999999999999999999854
No 489
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.00025 Score=51.97 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=30.9
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
+..++.+.+.+.++++.||+|+||||+.+.|...|.
T Consensus 27 ~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~ 62 (235)
T COG4778 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL 62 (235)
T ss_pred eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC
Confidence 345566778899999999999999999999998773
No 490
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.00086 Score=57.24 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=27.5
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
..+-+..++|.||||+||||+++.+++.+++..
T Consensus 34 ~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~ 66 (585)
T PRK14950 34 EGRVAHAYLFTGPRGVGKTSTARILAKAVNCTT 66 (585)
T ss_pred hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 345566789999999999999999999887543
No 491
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.12 E-value=0.00021 Score=54.71 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=29.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45666667788899999999999999999999954
No 492
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.11 E-value=0.00083 Score=52.23 Aligned_cols=24 Identities=38% Similarity=0.743 Sum_probs=21.7
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.++|+|+||+||||+++.+++.+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999875
No 493
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.00022 Score=54.48 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=29.5
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+++.++....++.++.|+|++||||||+.+.|+.
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4566666778899999999999999999999994
No 494
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.001 Score=57.41 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=30.1
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
+.+....++-+.-++|+|++|+||||+++.|++.+++
T Consensus 28 L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 28 LTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3333445666778899999999999999999999977
No 495
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.00023 Score=53.93 Aligned_cols=34 Identities=32% Similarity=0.449 Sum_probs=29.3
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+++.++....++.++.|+|++||||||+.+.|+.
T Consensus 20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4566667778889999999999999999999984
No 496
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.00024 Score=53.94 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=30.4
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++....++.++.|+|++||||||+.+.|+..+
T Consensus 19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456666677889999999999999999999998543
No 497
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00025 Score=52.46 Aligned_cols=48 Identities=25% Similarity=0.330 Sum_probs=38.6
Q ss_pred hhhcCCCCchhHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHH
Q 032438 6 AANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIK 53 (141)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La 53 (141)
+...+|.+.+..--++++.++..-+++-.|.|+|.+||||||+.+.+-
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN 53 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN 53 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH
Confidence 344455666666677888888777888999999999999999998874
No 498
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.0002 Score=53.89 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=29.9
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.++....++.++.|+|++||||||+.+.|+..
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 45666677788999999999999999999999843
No 499
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.10 E-value=0.00052 Score=49.06 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~ 55 (141)
++++++|.||+||||+...|++.
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHc
Confidence 58899999999999999999976
No 500
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.10 E-value=0.0008 Score=58.81 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
....++++||||+|||++++.||+++
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34588999999999999999999876
Done!