Query 032438
Match_columns 141
No_of_seqs 129 out of 1335
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 23:11:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032438.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032438hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 7.5E-29 2.6E-33 184.9 11.2 105 28-132 25-130 (217)
2 3sr0_A Adenylate kinase; phosp 99.9 1.1E-27 3.7E-32 177.3 10.5 97 33-132 1-97 (206)
3 3gmt_A Adenylate kinase; ssgci 99.9 8.3E-25 2.8E-29 164.2 10.9 99 32-130 8-106 (230)
4 3tlx_A Adenylate kinase 2; str 99.9 3.8E-24 1.3E-28 161.1 12.2 124 7-130 4-127 (243)
5 3be4_A Adenylate kinase; malar 99.8 1.2E-20 4.1E-25 139.2 10.8 102 29-130 2-103 (217)
6 3dl0_A Adenylate kinase; phosp 99.8 2.4E-20 8.4E-25 136.8 10.7 99 33-131 1-99 (216)
7 1ak2_A Adenylate kinase isoenz 99.8 2.8E-20 9.6E-25 138.6 11.0 103 29-131 13-115 (233)
8 1aky_A Adenylate kinase; ATP:A 99.8 3.8E-20 1.3E-24 136.4 10.7 101 30-130 2-103 (220)
9 3fb4_A Adenylate kinase; psych 99.8 5.9E-20 2E-24 134.7 11.0 99 33-131 1-99 (216)
10 1e4v_A Adenylate kinase; trans 99.8 1.1E-19 3.7E-24 133.6 9.5 98 33-130 1-98 (214)
11 2cdn_A Adenylate kinase; phosp 99.8 1.5E-18 5.2E-23 126.1 11.0 103 28-130 16-118 (201)
12 1zak_A Adenylate kinase; ATP:A 99.8 6.7E-19 2.3E-23 129.9 9.0 100 31-130 4-104 (222)
13 2xb4_A Adenylate kinase; ATP-b 99.8 1.1E-18 3.7E-23 129.4 9.4 97 33-130 1-97 (223)
14 1zd8_A GTP:AMP phosphotransfer 99.8 4E-18 1.4E-22 126.2 11.4 100 30-130 5-104 (227)
15 2c95_A Adenylate kinase 1; tra 99.7 1.2E-17 4.1E-22 120.0 10.6 101 30-130 7-108 (196)
16 1qf9_A UMP/CMP kinase, protein 99.7 5.3E-17 1.8E-21 116.0 12.8 98 31-129 5-102 (194)
17 2bwj_A Adenylate kinase 5; pho 99.7 3.3E-17 1.1E-21 118.0 10.1 100 31-130 11-111 (199)
18 3cm0_A Adenylate kinase; ATP-b 99.7 4E-17 1.4E-21 116.7 10.4 94 31-129 3-96 (186)
19 1ukz_A Uridylate kinase; trans 99.7 8E-17 2.7E-21 116.8 11.3 103 29-131 12-117 (203)
20 1tev_A UMP-CMP kinase; ploop, 99.7 1.5E-16 5.2E-21 113.8 11.0 99 31-129 2-105 (196)
21 2bbw_A Adenylate kinase 4, AK4 99.6 9.1E-15 3.1E-19 109.3 12.4 99 30-129 25-123 (246)
22 3lw7_A Adenylate kinase relate 99.4 3.8E-13 1.3E-17 93.9 9.0 93 33-132 2-99 (179)
23 1ly1_A Polynucleotide kinase; 99.4 9.8E-13 3.4E-17 92.8 6.3 95 32-129 2-97 (181)
24 3vaa_A Shikimate kinase, SK; s 99.2 2.6E-11 8.9E-16 87.8 6.8 98 21-128 14-115 (199)
25 1ltq_A Polynucleotide kinase; 99.2 3.8E-11 1.3E-15 91.7 7.9 95 32-129 2-97 (301)
26 1kht_A Adenylate kinase; phosp 99.1 4.4E-11 1.5E-15 85.0 4.8 41 32-72 3-48 (192)
27 1nks_A Adenylate kinase; therm 99.1 2E-10 6.7E-15 81.6 7.0 39 33-71 2-45 (194)
28 2rhm_A Putative kinase; P-loop 99.1 8.1E-10 2.8E-14 78.6 9.7 41 30-70 3-43 (193)
29 3t61_A Gluconokinase; PSI-biol 99.1 2.4E-10 8.3E-15 82.5 6.5 88 30-130 16-106 (202)
30 1cke_A CK, MSSA, protein (cyti 99.0 1.7E-09 5.8E-14 79.0 10.2 40 32-71 5-44 (227)
31 2wwf_A Thymidilate kinase, put 99.0 2.7E-11 9.3E-16 87.7 0.2 90 30-121 8-105 (212)
32 2pbr_A DTMP kinase, thymidylat 99.0 8.1E-10 2.8E-14 78.5 7.3 54 34-93 2-58 (195)
33 1via_A Shikimate kinase; struc 99.0 9.3E-10 3.2E-14 77.7 7.3 37 34-70 6-42 (175)
34 3nwj_A ATSK2; P loop, shikimat 99.0 7.9E-10 2.7E-14 83.5 7.0 103 20-129 33-141 (250)
35 2iyv_A Shikimate kinase, SK; t 99.0 6.5E-10 2.2E-14 79.0 6.0 39 33-71 3-41 (184)
36 2pt5_A Shikimate kinase, SK; a 99.0 1.5E-09 5E-14 75.9 7.6 38 33-70 1-38 (168)
37 1zuh_A Shikimate kinase; alpha 99.0 9.8E-10 3.3E-14 77.0 6.4 39 33-71 8-46 (168)
38 2v54_A DTMP kinase, thymidylat 99.0 6.3E-10 2.1E-14 80.0 5.2 83 31-121 3-97 (204)
39 2p5t_B PEZT; postsegregational 99.0 6.3E-10 2.1E-14 83.5 5.1 92 29-128 29-127 (253)
40 1y63_A LMAJ004144AAA protein; 98.9 1E-09 3.5E-14 78.4 5.5 43 28-70 6-49 (184)
41 3trf_A Shikimate kinase, SK; a 98.9 1.5E-09 5E-14 77.1 5.4 40 31-70 4-43 (185)
42 3a4m_A L-seryl-tRNA(SEC) kinas 98.9 2.7E-09 9.2E-14 80.4 6.0 84 31-129 3-91 (260)
43 1gvn_B Zeta; postsegregational 98.9 5.3E-09 1.8E-13 80.2 7.2 39 29-67 30-70 (287)
44 3iij_A Coilin-interacting nucl 98.8 4.2E-09 1.4E-13 74.6 5.3 40 31-70 10-49 (180)
45 4e22_A Cytidylate kinase; P-lo 98.8 2.4E-08 8.2E-13 74.9 9.5 43 29-71 24-66 (252)
46 1e6c_A Shikimate kinase; phosp 98.8 4.4E-09 1.5E-13 73.6 4.8 38 33-70 3-40 (173)
47 2h92_A Cytidylate kinase; ross 98.8 4.4E-09 1.5E-13 76.6 4.7 39 32-70 3-41 (219)
48 1uj2_A Uridine-cytidine kinase 98.8 2.5E-09 8.6E-14 80.0 3.5 41 28-68 18-68 (252)
49 4eaq_A DTMP kinase, thymidylat 98.8 1.1E-08 3.6E-13 76.0 6.8 90 29-124 23-133 (229)
50 2z0h_A DTMP kinase, thymidylat 98.8 1.7E-08 5.7E-13 71.9 7.3 54 34-93 2-58 (197)
51 1nn5_A Similar to deoxythymidy 98.8 4.1E-09 1.4E-13 76.1 3.9 63 30-94 7-69 (215)
52 1kag_A SKI, shikimate kinase I 98.8 8E-09 2.7E-13 72.4 4.9 39 32-70 4-42 (173)
53 2grj_A Dephospho-COA kinase; T 98.7 1.4E-08 4.8E-13 73.7 5.6 43 31-73 11-53 (192)
54 1uf9_A TT1252 protein; P-loop, 98.7 1.3E-08 4.5E-13 72.8 5.4 42 29-71 5-46 (203)
55 1vht_A Dephospho-COA kinase; s 98.7 1.6E-08 5.6E-13 73.6 5.8 42 31-73 3-44 (218)
56 3kb2_A SPBC2 prophage-derived 98.7 6.5E-09 2.2E-13 72.4 3.5 37 33-69 2-38 (173)
57 2vli_A Antibiotic resistance p 98.7 2.4E-08 8.1E-13 70.4 6.2 31 31-61 4-34 (183)
58 2plr_A DTMP kinase, probable t 98.7 1.8E-08 6E-13 72.5 5.6 29 31-59 3-31 (213)
59 2f6r_A COA synthase, bifunctio 98.7 2E-08 6.9E-13 76.6 6.1 45 31-76 74-118 (281)
60 3zvl_A Bifunctional polynucleo 98.7 1.2E-08 4E-13 82.0 4.3 37 30-66 256-292 (416)
61 1jjv_A Dephospho-COA kinase; P 98.7 2.6E-08 8.9E-13 71.8 5.2 38 33-71 3-40 (206)
62 1qhx_A CPT, protein (chloramph 98.7 2.7E-08 9.2E-13 69.9 5.1 38 32-69 3-42 (178)
63 3ake_A Cytidylate kinase; CMP 98.6 2.9E-08 1E-12 71.2 5.3 38 34-71 4-41 (208)
64 4eun_A Thermoresistant glucoki 98.6 2.3E-07 7.8E-12 66.9 10.0 39 29-67 26-64 (200)
65 3ch4_B Pmkase, phosphomevalona 98.6 8.6E-08 2.9E-12 70.3 7.7 42 29-70 8-52 (202)
66 2if2_A Dephospho-COA kinase; a 98.6 2.4E-08 8.3E-13 71.8 4.6 39 33-72 2-40 (204)
67 3r20_A Cytidylate kinase; stru 98.6 3.7E-08 1.3E-12 73.6 5.3 42 30-71 7-48 (233)
68 1knq_A Gluconate kinase; ALFA/ 98.6 2.6E-08 9.1E-13 70.0 4.2 39 29-67 5-43 (175)
69 1q3t_A Cytidylate kinase; nucl 98.6 6.3E-08 2.2E-12 71.6 5.4 42 29-70 13-54 (236)
70 2axn_A 6-phosphofructo-2-kinas 98.5 1.3E-07 4.3E-12 78.1 6.4 42 30-71 33-79 (520)
71 3hdt_A Putative kinase; struct 98.5 1.4E-07 4.8E-12 70.0 5.9 45 27-72 9-53 (223)
72 4i1u_A Dephospho-COA kinase; s 98.5 3E-07 1E-11 67.7 7.3 51 34-85 11-61 (210)
73 2ze6_A Isopentenyl transferase 98.4 7E-08 2.4E-12 72.5 2.7 35 33-67 2-36 (253)
74 3v9p_A DTMP kinase, thymidylat 98.4 4.2E-07 1.4E-11 67.6 6.6 63 30-94 23-88 (227)
75 3uie_A Adenylyl-sulfate kinase 98.4 3E-07 1E-11 66.2 5.6 43 24-66 17-64 (200)
76 2qt1_A Nicotinamide riboside k 98.4 1.7E-07 5.8E-12 67.6 3.4 41 28-68 17-58 (207)
77 3fdi_A Uncharacterized protein 98.4 3.6E-07 1.2E-11 66.5 4.8 38 32-70 6-43 (201)
78 1zp6_A Hypothetical protein AT 98.4 2.8E-07 9.6E-12 65.3 4.0 40 29-68 6-47 (191)
79 2jaq_A Deoxyguanosine kinase; 98.3 4E-07 1.4E-11 64.9 3.9 30 33-62 1-30 (205)
80 2pez_A Bifunctional 3'-phospho 98.3 4.6E-07 1.6E-11 63.9 3.8 34 30-63 3-39 (179)
81 1m7g_A Adenylylsulfate kinase; 98.3 6.8E-07 2.3E-11 64.8 4.6 39 28-66 21-65 (211)
82 3c8u_A Fructokinase; YP_612366 98.3 6.5E-07 2.2E-11 64.9 4.3 50 16-65 6-60 (208)
83 3crm_A TRNA delta(2)-isopenten 98.3 3.6E-07 1.2E-11 71.3 2.8 36 32-67 5-40 (323)
84 2yvu_A Probable adenylyl-sulfa 98.3 7.7E-07 2.6E-11 63.1 4.3 38 29-66 10-52 (186)
85 2qor_A Guanylate kinase; phosp 98.2 1E-06 3.5E-11 63.5 4.8 28 30-57 10-37 (204)
86 1a7j_A Phosphoribulokinase; tr 98.2 3E-07 1E-11 70.5 2.0 39 30-68 3-46 (290)
87 3a8t_A Adenylate isopentenyltr 98.2 6.6E-07 2.3E-11 70.3 3.3 38 29-66 37-74 (339)
88 2jeo_A Uridine-cytidine kinase 98.2 1.3E-06 4.3E-11 64.9 4.6 39 21-59 14-52 (245)
89 4edh_A DTMP kinase, thymidylat 98.2 1.2E-06 4.2E-11 64.3 4.2 53 31-89 5-60 (213)
90 3asz_A Uridine kinase; cytidin 98.2 1E-06 3.4E-11 63.6 3.6 39 29-67 3-43 (211)
91 3t15_A Ribulose bisphosphate c 98.2 9.7E-07 3.3E-11 67.5 3.6 39 29-67 33-73 (293)
92 4b4t_M 26S protease regulatory 98.2 1.2E-06 4.1E-11 70.9 4.0 35 28-62 211-245 (434)
93 2ga8_A Hypothetical 39.9 kDa p 98.2 7.7E-07 2.6E-11 70.4 2.6 47 14-60 4-52 (359)
94 4b4t_K 26S protease regulatory 98.2 1.2E-06 4.3E-11 70.7 3.9 35 28-62 202-236 (428)
95 4b4t_L 26S protease subunit RP 98.1 1.5E-06 5.1E-11 70.4 4.3 35 28-62 211-245 (437)
96 2bdt_A BH3686; alpha-beta prot 98.1 2.1E-06 7.1E-11 60.9 4.4 36 33-68 3-39 (189)
97 3d3q_A TRNA delta(2)-isopenten 98.1 8.7E-07 3E-11 69.6 2.3 34 33-66 8-41 (340)
98 4b4t_J 26S protease regulatory 98.1 1.6E-06 5.5E-11 69.5 3.9 36 28-63 178-213 (405)
99 3foz_A TRNA delta(2)-isopenten 98.1 1.3E-06 4.4E-11 67.9 3.0 37 30-66 8-44 (316)
100 3syl_A Protein CBBX; photosynt 98.1 7.2E-07 2.5E-11 67.7 1.6 38 29-66 64-110 (309)
101 4hlc_A DTMP kinase, thymidylat 98.1 9E-06 3.1E-10 59.3 7.3 55 33-93 3-59 (205)
102 3lv8_A DTMP kinase, thymidylat 98.1 1.5E-06 5.3E-11 64.9 3.1 54 31-86 26-79 (236)
103 3exa_A TRNA delta(2)-isopenten 98.1 1.4E-06 4.7E-11 67.9 2.8 35 32-66 3-37 (322)
104 3ec2_A DNA replication protein 98.0 4.3E-06 1.5E-10 58.9 4.6 42 30-71 36-83 (180)
105 2j41_A Guanylate kinase; GMP, 98.0 2.9E-06 1E-10 60.5 3.7 27 30-56 4-30 (207)
106 4b4t_I 26S protease regulatory 98.0 2.8E-06 9.5E-11 68.7 3.9 36 28-63 212-247 (437)
107 4b4t_H 26S protease regulatory 98.0 2.7E-06 9.3E-11 69.3 3.9 35 28-62 239-273 (467)
108 1dek_A Deoxynucleoside monopho 98.0 5.1E-06 1.8E-10 62.3 5.0 40 33-72 2-41 (241)
109 1svm_A Large T antigen; AAA+ f 98.0 7.7E-06 2.6E-10 65.0 6.2 47 16-62 153-199 (377)
110 2qz4_A Paraplegin; AAA+, SPG7, 98.0 3.9E-06 1.3E-10 62.0 4.1 32 30-61 37-68 (262)
111 1bif_A 6-phosphofructo-2-kinas 98.0 6.3E-06 2.2E-10 66.9 5.6 41 30-70 37-82 (469)
112 2x8a_A Nuclear valosin-contain 98.0 4.2E-06 1.4E-10 63.5 4.2 30 30-59 42-71 (274)
113 3tau_A Guanylate kinase, GMP k 98.0 4E-06 1.4E-10 60.8 3.8 29 29-57 5-33 (208)
114 1lv7_A FTSH; alpha/beta domain 98.0 4E-06 1.4E-10 62.3 3.7 31 30-60 43-73 (257)
115 3cf0_A Transitional endoplasmi 98.0 4.8E-06 1.7E-10 63.6 4.0 42 29-70 46-89 (301)
116 3eph_A TRNA isopentenyltransfe 98.0 2.5E-06 8.7E-11 68.4 2.5 36 31-66 1-36 (409)
117 1odf_A YGR205W, hypothetical 3 98.0 1.1E-05 3.8E-10 61.8 5.9 52 16-67 11-74 (290)
118 3b9p_A CG5977-PA, isoform A; A 98.0 5.3E-06 1.8E-10 62.7 4.0 31 30-60 52-82 (297)
119 3h4m_A Proteasome-activating n 98.0 6.2E-06 2.1E-10 61.9 4.3 32 30-61 49-80 (285)
120 3tr0_A Guanylate kinase, GMP k 97.9 6.2E-06 2.1E-10 58.8 3.9 27 30-56 5-31 (205)
121 1rz3_A Hypothetical protein rb 97.9 1.4E-05 4.7E-10 57.6 5.8 41 16-56 5-46 (201)
122 1sq5_A Pantothenate kinase; P- 97.9 7E-06 2.4E-10 63.1 4.2 37 30-66 78-121 (308)
123 2c9o_A RUVB-like 1; hexameric 97.9 1.1E-05 3.7E-10 65.2 5.4 34 24-57 55-88 (456)
124 3eie_A Vacuolar protein sortin 97.9 7.3E-06 2.5E-10 63.2 4.2 39 29-67 48-88 (322)
125 2v9p_A Replication protein E1; 97.9 1.5E-05 5.3E-10 61.6 6.0 46 10-56 105-150 (305)
126 3hws_A ATP-dependent CLP prote 97.9 1.1E-05 3.7E-10 63.1 5.1 36 31-66 50-87 (363)
127 1kgd_A CASK, peripheral plasma 97.9 8.2E-06 2.8E-10 57.7 3.9 27 30-56 3-29 (180)
128 1jbk_A CLPB protein; beta barr 97.9 1.8E-05 6.2E-10 54.8 5.5 37 18-56 31-67 (195)
129 2w58_A DNAI, primosome compone 97.9 5E-05 1.7E-09 54.1 7.9 39 33-71 55-98 (202)
130 1d2n_A N-ethylmaleimide-sensit 97.9 8.8E-06 3E-10 60.9 4.0 34 29-62 61-94 (272)
131 1g8f_A Sulfate adenylyltransfe 97.9 8E-06 2.7E-10 67.3 4.0 36 30-65 393-435 (511)
132 3d8b_A Fidgetin-like protein 1 97.9 1.6E-05 5.3E-10 62.3 5.3 31 30-60 115-145 (357)
133 3lnc_A Guanylate kinase, GMP k 97.9 4.8E-06 1.6E-10 61.0 2.2 38 19-56 14-52 (231)
134 4tmk_A Protein (thymidylate ki 97.9 7.4E-06 2.5E-10 60.2 3.1 52 32-86 3-55 (213)
135 1z6g_A Guanylate kinase; struc 97.9 8.9E-06 3E-10 59.5 3.5 37 20-56 11-47 (218)
136 1ixz_A ATP-dependent metallopr 97.9 1.1E-05 3.8E-10 59.7 4.1 35 32-66 49-85 (254)
137 3ld9_A DTMP kinase, thymidylat 97.8 8.3E-06 2.8E-10 60.4 3.2 30 29-58 18-47 (223)
138 1g41_A Heat shock protein HSLU 97.8 8E-06 2.7E-10 66.3 3.3 34 31-64 49-82 (444)
139 1xwi_A SKD1 protein; VPS4B, AA 97.8 1.1E-05 3.7E-10 62.5 4.0 31 29-59 42-73 (322)
140 2r62_A Cell division protease 97.8 4.8E-06 1.6E-10 62.1 1.7 34 29-62 41-74 (268)
141 2p65_A Hypothetical protein PF 97.8 1.6E-05 5.4E-10 55.2 4.2 27 30-56 41-67 (187)
142 1x6v_B Bifunctional 3'-phospho 97.8 1E-05 3.5E-10 68.2 3.8 39 31-69 51-93 (630)
143 1ofh_A ATP-dependent HSL prote 97.8 9.7E-06 3.3E-10 61.1 3.3 31 30-60 48-78 (310)
144 3pfi_A Holliday junction ATP-d 97.8 2.3E-05 7.8E-10 60.2 5.4 33 29-61 52-84 (338)
145 2qp9_X Vacuolar protein sortin 97.8 1.1E-05 3.9E-10 63.1 3.7 38 30-67 82-121 (355)
146 1p5z_B DCK, deoxycytidine kina 97.8 6.1E-06 2.1E-10 61.7 2.0 33 29-61 21-54 (263)
147 3n70_A Transport activator; si 97.8 2.6E-05 8.9E-10 53.3 5.0 40 17-56 9-48 (145)
148 1gtv_A TMK, thymidylate kinase 97.8 3.1E-06 1.1E-10 60.8 0.2 25 34-58 2-26 (214)
149 3cf2_A TER ATPase, transitiona 97.8 1.1E-05 3.8E-10 69.7 3.5 40 28-67 234-275 (806)
150 3tmk_A Thymidylate kinase; pho 97.8 2E-05 6.8E-10 58.1 4.3 54 31-89 4-57 (216)
151 4gp7_A Metallophosphoesterase; 97.8 7.8E-06 2.7E-10 57.5 2.1 37 27-65 4-40 (171)
152 1l8q_A Chromosomal replication 97.8 4.8E-05 1.6E-09 58.3 6.6 40 31-70 36-80 (324)
153 1um8_A ATP-dependent CLP prote 97.8 1.3E-05 4.4E-10 62.9 3.3 32 30-61 70-101 (376)
154 1iy2_A ATP-dependent metallopr 97.8 2E-05 6.7E-10 59.3 4.1 35 32-66 73-109 (278)
155 3co5_A Putative two-component 97.8 7E-06 2.4E-10 56.1 1.4 51 17-67 12-63 (143)
156 3uk6_A RUVB-like 2; hexameric 97.8 3.5E-05 1.2E-09 59.7 5.6 33 26-58 64-96 (368)
157 3tqc_A Pantothenate kinase; bi 97.8 2.2E-05 7.4E-10 61.2 4.3 39 29-67 89-134 (321)
158 2ocp_A DGK, deoxyguanosine kin 97.7 2E-05 6.7E-10 58.1 3.8 26 31-56 1-26 (241)
159 1njg_A DNA polymerase III subu 97.7 4.2E-05 1.4E-09 54.7 5.5 29 29-57 42-70 (250)
160 2qmh_A HPR kinase/phosphorylas 97.7 1.6E-05 5.6E-10 58.2 3.3 36 30-66 32-67 (205)
161 2gks_A Bifunctional SAT/APS ki 97.7 2.9E-05 9.9E-10 64.4 5.2 40 30-70 370-414 (546)
162 1in4_A RUVB, holliday junction 97.7 2.1E-05 7.3E-10 60.9 4.1 30 30-59 49-78 (334)
163 1lvg_A Guanylate kinase, GMP k 97.7 1.7E-05 5.8E-10 57.1 3.2 26 31-56 3-28 (198)
164 3a00_A Guanylate kinase, GMP k 97.7 1.8E-05 6E-10 56.2 3.3 25 32-56 1-25 (186)
165 2chg_A Replication factor C sm 97.7 5.3E-05 1.8E-09 53.6 5.8 23 34-56 40-62 (226)
166 3bos_A Putative DNA replicatio 97.7 4.8E-05 1.7E-09 54.9 5.7 37 31-67 51-92 (242)
167 1m8p_A Sulfate adenylyltransfe 97.7 2.7E-05 9.1E-10 65.0 4.8 37 30-66 394-436 (573)
168 3u61_B DNA polymerase accessor 97.7 3.8E-05 1.3E-09 58.7 5.3 35 28-62 44-78 (324)
169 1htw_A HI0065; nucleotide-bind 97.7 5.8E-05 2E-09 52.8 5.6 36 21-56 22-57 (158)
170 4a74_A DNA repair and recombin 97.7 1.7E-05 5.7E-10 57.3 2.8 39 17-55 10-48 (231)
171 1tue_A Replication protein E1; 97.7 4.5E-05 1.5E-09 56.1 4.8 33 28-60 54-86 (212)
172 3vfd_A Spastin; ATPase, microt 97.7 2.4E-05 8.4E-10 61.7 3.7 32 30-61 146-177 (389)
173 1ye8_A Protein THEP1, hypothet 97.7 2.6E-05 9E-10 55.5 3.4 26 33-58 1-26 (178)
174 2ce7_A Cell division protein F 97.7 3.3E-05 1.1E-09 63.1 4.4 33 30-62 47-79 (476)
175 2zan_A Vacuolar protein sortin 97.7 2.6E-05 8.9E-10 62.9 3.6 41 30-70 165-208 (444)
176 3hjn_A DTMP kinase, thymidylat 97.6 0.00019 6.5E-09 51.8 7.7 23 34-56 2-24 (197)
177 3ney_A 55 kDa erythrocyte memb 97.6 3.7E-05 1.3E-09 55.9 3.7 28 30-57 17-44 (197)
178 2cvh_A DNA repair and recombin 97.6 4.4E-05 1.5E-09 54.7 4.1 46 19-64 7-54 (220)
179 2bjv_A PSP operon transcriptio 97.6 5E-05 1.7E-09 56.5 4.5 48 18-65 15-67 (265)
180 2kjq_A DNAA-related protein; s 97.6 2.3E-05 7.8E-10 54.2 2.4 36 31-66 35-75 (149)
181 3aez_A Pantothenate kinase; tr 97.6 6.7E-05 2.3E-09 58.0 5.2 28 29-56 87-114 (312)
182 3cr8_A Sulfate adenylyltranfer 97.6 3E-05 1E-09 64.5 3.3 40 29-68 366-411 (552)
183 1sxj_A Activator 1 95 kDa subu 97.6 3.7E-05 1.3E-09 63.0 3.6 32 31-62 76-107 (516)
184 2eyu_A Twitching motility prot 97.6 5.9E-05 2E-09 56.8 4.4 34 21-56 16-49 (261)
185 4fcw_A Chaperone protein CLPB; 97.6 7.1E-05 2.4E-09 56.6 4.8 27 30-56 45-71 (311)
186 1hqc_A RUVB; extended AAA-ATPa 97.6 5.8E-05 2E-09 57.4 4.3 31 30-60 36-66 (324)
187 1n0w_A DNA repair protein RAD5 97.6 4.3E-05 1.5E-09 55.6 3.4 37 18-54 10-46 (243)
188 2v1u_A Cell division control p 97.6 5.1E-05 1.8E-09 58.6 4.0 28 29-56 41-68 (387)
189 3hu3_A Transitional endoplasmi 97.6 8.7E-05 3E-09 60.7 5.4 39 29-67 235-275 (489)
190 1znw_A Guanylate kinase, GMP k 97.6 5.7E-05 1.9E-09 54.4 3.8 29 28-56 16-44 (207)
191 1s96_A Guanylate kinase, GMP k 97.5 5.6E-05 1.9E-09 55.6 3.8 27 30-56 14-40 (219)
192 1ex7_A Guanylate kinase; subst 97.5 4.8E-05 1.6E-09 54.8 3.3 22 35-56 4-25 (186)
193 3te6_A Regulatory protein SIR3 97.5 7.5E-05 2.6E-09 58.1 4.3 28 29-56 42-69 (318)
194 2qm8_A GTPase/ATPase; G protei 97.5 0.00013 4.6E-09 56.8 5.7 37 19-55 42-78 (337)
195 1a5t_A Delta prime, HOLB; zinc 97.5 0.00017 5.9E-09 55.8 6.2 41 18-59 11-51 (334)
196 3pxg_A Negative regulator of g 97.5 0.00012 4.3E-09 59.3 5.5 27 30-56 199-225 (468)
197 2qby_B CDC6 homolog 3, cell di 97.5 0.00012 4E-09 56.8 5.2 28 29-56 42-69 (384)
198 2qby_A CDC6 homolog 1, cell di 97.5 7.2E-05 2.5E-09 57.6 3.9 28 29-56 42-69 (386)
199 1cr0_A DNA primase/helicase; R 97.5 8.9E-05 3E-09 56.1 4.1 35 22-56 25-59 (296)
200 1jr3_A DNA polymerase III subu 97.5 0.00019 6.6E-09 55.3 6.1 30 29-58 35-64 (373)
201 1sxj_C Activator 1 40 kDa subu 97.5 0.00017 5.8E-09 55.7 5.8 23 34-56 48-70 (340)
202 1sxj_E Activator 1 40 kDa subu 97.5 9.9E-05 3.4E-09 56.8 4.4 23 34-56 38-60 (354)
203 2qgz_A Helicase loader, putati 97.5 0.00011 3.7E-09 56.6 4.5 40 32-71 152-197 (308)
204 2ehv_A Hypothetical protein PH 97.5 6.7E-05 2.3E-09 54.7 3.2 26 28-53 26-51 (251)
205 1ypw_A Transitional endoplasmi 97.5 8.1E-05 2.8E-09 64.3 4.1 34 28-61 234-267 (806)
206 2w0m_A SSO2452; RECA, SSPF, un 97.5 6.7E-05 2.3E-09 54.0 3.0 28 28-55 19-46 (235)
207 2dhr_A FTSH; AAA+ protein, hex 97.4 8.5E-05 2.9E-09 61.0 3.9 30 31-60 63-92 (499)
208 2z4s_A Chromosomal replication 97.4 0.00022 7.6E-09 57.4 6.3 39 32-70 130-175 (440)
209 1iqp_A RFCS; clamp loader, ext 97.4 0.00024 8.1E-09 53.7 5.9 23 34-56 48-70 (327)
210 1sxj_B Activator 1 37 kDa subu 97.4 0.00022 7.7E-09 53.7 5.8 27 29-56 40-66 (323)
211 1sxj_D Activator 1 41 kDa subu 97.4 0.00018 6E-09 55.2 5.2 24 34-57 60-83 (353)
212 1c9k_A COBU, adenosylcobinamid 97.4 7.1E-05 2.4E-09 53.7 2.7 28 35-63 2-31 (180)
213 3m6a_A ATP-dependent protease 97.4 9.9E-05 3.4E-09 61.0 3.9 30 30-59 106-135 (543)
214 3cf2_A TER ATPase, transitiona 97.4 6.5E-05 2.2E-09 64.9 2.9 41 29-69 508-550 (806)
215 1fnn_A CDC6P, cell division co 97.4 0.0002 6.8E-09 55.4 5.3 24 33-56 45-68 (389)
216 2dr3_A UPF0273 protein PH0284; 97.4 6.7E-05 2.3E-09 54.6 2.4 45 21-65 12-61 (247)
217 3pvs_A Replication-associated 97.4 0.00011 3.6E-09 59.5 3.7 29 33-61 51-79 (447)
218 3b9q_A Chloroplast SRP recepto 97.4 0.00012 4.3E-09 56.2 3.8 27 30-56 98-124 (302)
219 2chq_A Replication factor C sm 97.4 0.00021 7.3E-09 53.8 4.9 23 34-56 40-62 (319)
220 3p32_A Probable GTPase RV1496/ 97.4 0.00034 1.2E-08 54.7 6.2 36 21-56 68-103 (355)
221 3pxi_A Negative regulator of g 97.3 0.00023 7.8E-09 60.8 5.5 27 30-56 199-225 (758)
222 1xjc_A MOBB protein homolog; s 97.3 0.00016 5.3E-09 51.4 3.7 26 31-56 3-28 (169)
223 3tif_A Uncharacterized ABC tra 97.3 7.9E-05 2.7E-09 55.2 2.2 31 24-54 23-53 (235)
224 1vma_A Cell division protein F 97.3 0.00018 6.1E-09 55.5 4.2 27 30-56 102-128 (306)
225 3e70_C DPA, signal recognition 97.3 0.00019 6.6E-09 55.8 4.3 27 30-56 127-153 (328)
226 1rj9_A FTSY, signal recognitio 97.3 0.00019 6.6E-09 55.3 4.2 26 31-56 101-126 (304)
227 2r44_A Uncharacterized protein 97.3 8.8E-05 3E-09 56.9 2.3 28 33-60 47-74 (331)
228 2p67_A LAO/AO transport system 97.3 0.00041 1.4E-08 54.0 5.8 39 18-56 42-80 (341)
229 2og2_A Putative signal recogni 97.3 0.00019 6.4E-09 56.7 3.8 27 30-56 155-181 (359)
230 2cbz_A Multidrug resistance-as 97.2 0.00011 3.6E-09 54.6 2.2 33 23-55 22-54 (237)
231 2vp4_A Deoxynucleoside kinase; 97.2 0.00014 4.7E-09 53.4 2.6 27 29-55 17-43 (230)
232 1mv5_A LMRA, multidrug resista 97.2 0.00012 4E-09 54.5 2.2 33 23-55 19-51 (243)
233 2i3b_A HCR-ntpase, human cance 97.2 0.0002 6.8E-09 51.5 3.4 24 33-56 2-25 (189)
234 1b0u_A Histidine permease; ABC 97.2 0.00012 4.1E-09 55.1 2.1 33 23-55 23-55 (262)
235 2pcj_A ABC transporter, lipopr 97.2 8.9E-05 3E-09 54.5 1.3 31 24-54 22-52 (224)
236 3gfo_A Cobalt import ATP-bindi 97.2 9.9E-05 3.4E-09 56.1 1.6 34 22-55 24-57 (275)
237 2orw_A Thymidine kinase; TMTK, 97.2 0.00025 8.7E-09 50.5 3.6 25 32-56 3-27 (184)
238 2yhs_A FTSY, cell division pro 97.2 0.00011 3.9E-09 60.3 1.9 28 29-56 290-317 (503)
239 2qen_A Walker-type ATPase; unk 97.2 0.00058 2E-08 51.8 5.8 34 33-66 32-65 (350)
240 2gza_A Type IV secretion syste 97.2 0.00014 4.9E-09 57.1 2.4 34 23-56 166-199 (361)
241 1p9r_A General secretion pathw 97.2 0.00049 1.7E-08 55.3 5.6 35 20-56 157-191 (418)
242 2ixe_A Antigen peptide transpo 97.2 0.00013 4.5E-09 55.2 2.2 34 23-56 36-69 (271)
243 1u0j_A DNA replication protein 97.2 0.00076 2.6E-08 51.2 6.3 26 31-56 103-128 (267)
244 2zu0_C Probable ATP-dependent 97.2 0.00017 5.8E-09 54.4 2.6 31 25-55 39-69 (267)
245 2olj_A Amino acid ABC transpor 97.2 0.00014 4.8E-09 54.9 2.1 32 24-55 42-73 (263)
246 1pzn_A RAD51, DNA repair and r 97.2 0.00023 7.9E-09 55.7 3.3 38 19-56 118-155 (349)
247 3jvv_A Twitching mobility prot 97.2 0.00038 1.3E-08 54.8 4.6 27 30-56 121-147 (356)
248 2ff7_A Alpha-hemolysin translo 97.2 0.00012 4.2E-09 54.6 1.6 33 24-56 27-59 (247)
249 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00015 5.2E-09 54.1 2.2 31 24-54 21-51 (250)
250 4g1u_C Hemin import ATP-bindin 97.2 0.00012 4.1E-09 55.3 1.6 32 23-54 28-59 (266)
251 1ypw_A Transitional endoplasmi 97.2 0.00012 4E-09 63.3 1.7 32 30-61 509-540 (806)
252 2onk_A Molybdate/tungstate ABC 97.2 0.00018 6E-09 53.6 2.5 30 24-54 17-46 (240)
253 1g6h_A High-affinity branched- 97.1 0.00013 4.5E-09 54.7 1.8 32 24-55 25-56 (257)
254 2ghi_A Transport protein; mult 97.1 0.00015 5.3E-09 54.5 2.2 33 23-55 37-69 (260)
255 1ojl_A Transcriptional regulat 97.1 0.00049 1.7E-08 52.7 4.9 40 17-56 10-49 (304)
256 1g8p_A Magnesium-chelatase 38 97.1 0.00016 5.6E-09 55.3 2.2 25 33-57 46-70 (350)
257 2px0_A Flagellar biosynthesis 97.1 0.00031 1.1E-08 53.8 3.7 27 30-56 103-129 (296)
258 1ji0_A ABC transporter; ATP bi 97.1 0.00014 4.7E-09 54.1 1.6 32 24-55 24-55 (240)
259 1vpl_A ABC transporter, ATP-bi 97.1 0.00017 5.7E-09 54.3 2.1 32 24-55 33-64 (256)
260 1sgw_A Putative ABC transporte 97.1 0.00012 4.1E-09 53.7 1.3 32 24-55 27-58 (214)
261 3kl4_A SRP54, signal recogniti 97.1 0.00054 1.9E-08 55.3 5.1 26 31-56 96-121 (433)
262 2yz2_A Putative ABC transporte 97.1 0.00018 6E-09 54.3 2.2 33 23-55 24-56 (266)
263 1zu4_A FTSY; GTPase, signal re 97.1 0.00037 1.3E-08 54.0 3.9 27 30-56 103-129 (320)
264 1r6b_X CLPA protein; AAA+, N-t 97.1 0.00031 1.1E-08 59.8 3.8 36 31-66 487-524 (758)
265 1zcb_A G alpha I/13; GTP-bindi 97.1 0.00033 1.1E-08 55.2 3.7 42 15-56 16-57 (362)
266 2pze_A Cystic fibrosis transme 97.1 0.00015 5.2E-09 53.5 1.6 32 24-55 26-57 (229)
267 1np6_A Molybdopterin-guanine d 97.1 0.00037 1.3E-08 49.5 3.6 25 32-56 6-30 (174)
268 3hr8_A Protein RECA; alpha and 97.1 0.0003 1E-08 55.4 3.4 50 16-65 44-99 (356)
269 1lw7_A Transcriptional regulat 97.1 0.00026 8.7E-09 55.4 2.9 27 32-58 170-196 (365)
270 2ewv_A Twitching motility prot 97.1 0.00039 1.3E-08 54.9 4.0 28 29-56 133-160 (372)
271 3k1j_A LON protease, ATP-depen 97.1 0.00029 9.8E-09 58.8 3.3 36 22-57 50-85 (604)
272 2r2a_A Uncharacterized protein 97.1 0.00043 1.5E-08 50.2 3.8 25 30-54 3-27 (199)
273 2ihy_A ABC transporter, ATP-bi 97.1 0.00017 5.7E-09 54.9 1.6 32 24-55 39-70 (279)
274 1v5w_A DMC1, meiotic recombina 97.1 0.00048 1.6E-08 53.6 4.2 39 17-55 107-145 (343)
275 2lkc_A Translation initiation 97.1 0.00051 1.7E-08 47.1 3.9 26 29-54 5-30 (178)
276 3b85_A Phosphate starvation-in 97.1 0.00026 8.8E-09 51.6 2.5 25 30-54 20-44 (208)
277 2qi9_C Vitamin B12 import ATP- 97.0 0.00018 6E-09 53.9 1.6 33 23-55 17-49 (249)
278 3tqf_A HPR(Ser) kinase; transf 97.0 0.00036 1.2E-08 50.0 3.1 33 31-64 15-47 (181)
279 2hxs_A RAB-26, RAS-related pro 97.0 0.00054 1.9E-08 47.0 3.9 27 29-55 3-29 (178)
280 2nq2_C Hypothetical ABC transp 97.0 0.00018 6.2E-09 53.9 1.6 32 24-55 23-54 (253)
281 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00018 6.2E-09 55.9 1.5 36 21-56 160-195 (330)
282 3clv_A RAB5 protein, putative; 97.0 0.00062 2.1E-08 47.3 4.2 27 29-55 4-30 (208)
283 3lda_A DNA repair protein RAD5 97.0 0.00035 1.2E-08 55.9 3.1 35 19-53 165-199 (400)
284 1z2a_A RAS-related protein RAB 97.0 0.00046 1.6E-08 46.7 3.3 25 31-55 4-28 (168)
285 2dyk_A GTP-binding protein; GT 97.0 0.00046 1.6E-08 46.5 3.3 23 33-55 2-24 (161)
286 3fvq_A Fe(3+) IONS import ATP- 97.0 0.00027 9.2E-09 55.8 2.4 31 24-54 22-52 (359)
287 1kao_A RAP2A; GTP-binding prot 97.0 0.00049 1.7E-08 46.4 3.4 24 32-55 3-26 (167)
288 2qag_B Septin-6, protein NEDD5 97.0 0.00058 2E-08 55.1 4.3 33 22-54 30-64 (427)
289 2www_A Methylmalonic aciduria 97.0 0.00075 2.6E-08 52.7 4.9 26 30-55 72-97 (349)
290 1u8z_A RAS-related protein RAL 97.0 0.00047 1.6E-08 46.5 3.3 25 31-55 3-27 (168)
291 2yyz_A Sugar ABC transporter, 97.0 0.00031 1.1E-08 55.4 2.7 31 24-54 21-51 (359)
292 2zts_A Putative uncharacterize 97.0 0.00014 4.9E-09 52.9 0.6 37 18-54 16-52 (251)
293 2wjg_A FEOB, ferrous iron tran 97.0 0.00057 2E-08 47.4 3.7 25 30-54 5-29 (188)
294 3dm5_A SRP54, signal recogniti 97.0 0.00052 1.8E-08 55.6 3.9 26 31-56 99-124 (443)
295 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.0004 1.4E-08 56.4 3.2 32 24-55 130-161 (460)
296 1nrj_B SR-beta, signal recogni 97.0 0.00056 1.9E-08 48.8 3.7 28 29-56 9-36 (218)
297 3rlf_A Maltose/maltodextrin im 97.0 0.00033 1.1E-08 55.7 2.6 31 24-54 21-51 (381)
298 2hf9_A Probable hydrogenase ni 97.0 0.00059 2E-08 49.1 3.8 27 30-56 36-62 (226)
299 2gj8_A MNME, tRNA modification 97.0 0.00049 1.7E-08 47.7 3.3 26 30-55 2-27 (172)
300 2nzj_A GTP-binding protein REM 97.0 0.00055 1.9E-08 46.7 3.5 25 31-55 3-27 (175)
301 1nlf_A Regulatory protein REPA 97.0 0.00039 1.3E-08 52.2 2.9 26 29-54 27-52 (279)
302 2ged_A SR-beta, signal recogni 97.0 0.00065 2.2E-08 47.4 3.9 26 30-55 46-71 (193)
303 2b8t_A Thymidine kinase; deoxy 97.0 0.00065 2.2E-08 50.2 4.0 29 28-56 8-36 (223)
304 1ky3_A GTP-binding protein YPT 97.0 0.00055 1.9E-08 46.9 3.4 27 29-55 5-31 (182)
305 2wsm_A Hydrogenase expression/ 97.0 0.00062 2.1E-08 48.8 3.7 27 30-56 28-54 (221)
306 1v43_A Sugar-binding transport 97.0 0.00035 1.2E-08 55.3 2.6 31 24-54 29-59 (372)
307 1m2o_B GTP-binding protein SAR 97.0 0.0005 1.7E-08 48.4 3.2 34 20-54 12-45 (190)
308 1upt_A ARL1, ADP-ribosylation 97.0 0.0007 2.4E-08 46.0 3.9 25 30-54 5-29 (171)
309 2it1_A 362AA long hypothetical 97.0 0.00036 1.2E-08 55.1 2.6 31 24-54 21-51 (362)
310 2wji_A Ferrous iron transport 97.0 0.00055 1.9E-08 47.0 3.3 23 32-54 3-25 (165)
311 1fzq_A ADP-ribosylation factor 96.9 0.0007 2.4E-08 47.2 3.9 27 29-55 13-39 (181)
312 1z47_A CYSA, putative ABC-tran 96.9 0.0003 1E-08 55.4 2.2 32 23-54 32-63 (355)
313 2zr9_A Protein RECA, recombina 96.9 0.00046 1.6E-08 54.1 3.2 49 17-65 45-99 (349)
314 2f1r_A Molybdopterin-guanine d 96.9 0.00023 7.9E-09 50.4 1.4 24 33-56 3-26 (171)
315 2ce2_X GTPase HRAS; signaling 96.9 0.00054 1.9E-08 46.0 3.2 24 32-55 3-26 (166)
316 1qvr_A CLPB protein; coiled co 96.9 0.00061 2.1E-08 59.0 4.1 27 30-56 189-215 (854)
317 2oap_1 GSPE-2, type II secreti 96.9 0.00036 1.2E-08 57.4 2.5 35 22-56 250-284 (511)
318 3nbx_X ATPase RAVA; AAA+ ATPas 96.9 0.00061 2.1E-08 55.9 3.9 26 32-57 41-66 (500)
319 2f9l_A RAB11B, member RAS onco 96.9 0.00061 2.1E-08 48.2 3.5 24 32-55 5-28 (199)
320 3tui_C Methionine import ATP-b 96.9 0.0004 1.4E-08 54.9 2.6 31 24-54 46-76 (366)
321 1z08_A RAS-related protein RAB 96.9 0.00055 1.9E-08 46.5 3.0 26 30-55 4-29 (170)
322 1oix_A RAS-related protein RAB 96.9 0.00058 2E-08 48.2 3.2 24 32-55 29-52 (191)
323 2z43_A DNA repair and recombin 96.9 0.0005 1.7E-08 53.0 3.1 37 19-55 94-130 (324)
324 3bh0_A DNAB-like replicative h 96.9 0.00081 2.8E-08 51.7 4.3 37 28-64 64-105 (315)
325 1ek0_A Protein (GTP-binding pr 96.9 0.00051 1.7E-08 46.5 2.8 24 32-55 3-26 (170)
326 2i1q_A DNA repair and recombin 96.9 0.00054 1.9E-08 52.5 3.2 38 18-55 84-121 (322)
327 3nh6_A ATP-binding cassette SU 96.9 0.00019 6.6E-09 55.4 0.6 34 23-56 71-104 (306)
328 2bbs_A Cystic fibrosis transme 96.9 0.00033 1.1E-08 53.6 1.9 28 28-55 60-87 (290)
329 4dsu_A GTPase KRAS, isoform 2B 96.9 0.00063 2.2E-08 47.0 3.1 25 31-55 3-27 (189)
330 1c1y_A RAS-related protein RAP 96.9 0.00077 2.6E-08 45.5 3.5 23 32-54 3-25 (167)
331 1g29_1 MALK, maltose transport 96.9 0.00039 1.3E-08 55.1 2.2 31 24-54 21-51 (372)
332 3d31_A Sulfate/molybdate ABC t 96.9 0.00029 1E-08 55.3 1.4 31 24-54 18-48 (348)
333 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0014 4.7E-08 55.8 5.6 28 29-56 204-231 (758)
334 3q72_A GTP-binding protein RAD 96.8 0.00071 2.4E-08 45.8 3.1 22 32-53 2-23 (166)
335 2erx_A GTP-binding protein DI- 96.8 0.00076 2.6E-08 45.7 3.3 23 32-54 3-25 (172)
336 3b5x_A Lipid A export ATP-bind 96.8 0.0004 1.4E-08 57.7 2.2 36 21-56 358-393 (582)
337 3gd7_A Fusion complex of cysti 96.8 0.00045 1.5E-08 55.0 2.4 32 23-54 38-69 (390)
338 2fn4_A P23, RAS-related protei 96.8 0.00079 2.7E-08 46.1 3.3 26 30-55 7-32 (181)
339 1pui_A ENGB, probable GTP-bind 96.8 0.00044 1.5E-08 49.0 2.0 27 28-54 22-48 (210)
340 3tw8_B RAS-related protein RAB 96.8 0.00066 2.3E-08 46.5 2.9 26 29-54 6-31 (181)
341 3kkq_A RAS-related protein M-R 96.8 0.00089 3E-08 46.2 3.6 27 29-55 15-41 (183)
342 1j8m_F SRP54, signal recogniti 96.8 0.0017 5.8E-08 49.7 5.4 25 32-56 98-122 (297)
343 2bme_A RAB4A, RAS-related prot 96.8 0.0006 2.1E-08 47.2 2.7 26 30-55 8-33 (186)
344 1r2q_A RAS-related protein RAB 96.8 0.00053 1.8E-08 46.4 2.3 24 31-54 5-28 (170)
345 1u94_A RECA protein, recombina 96.8 0.00077 2.6E-08 53.0 3.5 47 18-64 48-100 (356)
346 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00078 2.7E-08 52.6 3.5 35 29-63 120-156 (331)
347 2a9k_A RAS-related protein RAL 96.8 0.00084 2.9E-08 46.2 3.3 27 29-55 15-41 (187)
348 1z0j_A RAB-22, RAS-related pro 96.8 0.00062 2.1E-08 46.2 2.6 25 31-55 5-29 (170)
349 2pjz_A Hypothetical protein ST 96.8 0.00044 1.5E-08 52.2 2.0 29 25-54 24-52 (263)
350 2zej_A Dardarin, leucine-rich 96.8 0.00068 2.3E-08 47.3 2.8 22 33-54 3-24 (184)
351 1wms_A RAB-9, RAB9, RAS-relate 96.8 0.00069 2.4E-08 46.4 2.8 25 31-55 6-30 (177)
352 1h65_A Chloroplast outer envel 96.8 0.0016 5.5E-08 48.6 5.0 38 18-55 25-62 (270)
353 1svi_A GTP-binding protein YSX 96.8 0.00082 2.8E-08 46.9 3.2 26 30-55 21-46 (195)
354 3bc1_A RAS-related protein RAB 96.8 0.00087 3E-08 46.4 3.3 25 30-54 9-33 (195)
355 1vg8_A RAS-related protein RAB 96.8 0.00086 2.9E-08 47.2 3.2 27 29-55 5-31 (207)
356 1m7b_A RND3/RHOE small GTP-bin 96.8 0.00084 2.9E-08 46.7 3.2 27 29-55 4-30 (184)
357 2j1l_A RHO-related GTP-binding 96.8 0.00082 2.8E-08 48.2 3.2 42 13-54 14-56 (214)
358 2v3c_C SRP54, signal recogniti 96.8 0.00076 2.6E-08 54.4 3.3 26 31-56 98-123 (432)
359 3bwd_D RAC-like GTP-binding pr 96.8 0.0011 3.8E-08 45.5 3.7 27 29-55 5-31 (182)
360 1tf7_A KAIC; homohexamer, hexa 96.8 0.00078 2.7E-08 55.2 3.4 32 21-52 27-59 (525)
361 1ksh_A ARF-like protein 2; sma 96.8 0.001 3.5E-08 46.1 3.5 26 30-55 16-41 (186)
362 1f6b_A SAR1; gtpases, N-termin 96.8 0.0014 4.6E-08 46.5 4.2 34 20-54 14-47 (198)
363 3pxi_A Negative regulator of g 96.8 0.00097 3.3E-08 56.9 4.0 34 34-67 523-561 (758)
364 1g16_A RAS-related protein SEC 96.8 0.00092 3.1E-08 45.3 3.2 23 32-54 3-25 (170)
365 2gno_A DNA polymerase III, gam 96.7 0.0016 5.5E-08 50.0 4.8 37 17-55 5-41 (305)
366 1zj6_A ADP-ribosylation factor 96.7 0.0017 5.8E-08 45.2 4.6 26 29-54 13-38 (187)
367 2bov_A RAla, RAS-related prote 96.7 0.0011 3.8E-08 46.5 3.6 26 30-55 12-37 (206)
368 1oxx_K GLCV, glucose, ABC tran 96.7 0.0003 1E-08 55.3 0.7 31 24-54 23-53 (353)
369 1moz_A ARL1, ADP-ribosylation 96.7 0.00065 2.2E-08 46.9 2.4 25 30-54 16-40 (183)
370 3q85_A GTP-binding protein REM 96.7 0.0011 3.7E-08 45.1 3.4 22 33-54 3-24 (169)
371 1tq4_A IIGP1, interferon-induc 96.7 0.00096 3.3E-08 53.6 3.6 24 31-54 68-91 (413)
372 2atv_A RERG, RAS-like estrogen 96.7 0.0012 4.2E-08 46.3 3.8 26 30-55 26-51 (196)
373 3con_A GTPase NRAS; structural 96.7 0.00091 3.1E-08 46.5 3.1 25 31-55 20-44 (190)
374 2oil_A CATX-8, RAS-related pro 96.7 0.001 3.4E-08 46.5 3.3 27 29-55 22-48 (193)
375 2r6a_A DNAB helicase, replicat 96.7 0.0014 4.8E-08 52.8 4.5 28 28-55 199-226 (454)
376 1zd9_A ADP-ribosylation factor 96.7 0.00099 3.4E-08 46.6 3.2 26 29-54 19-44 (188)
377 1mh1_A RAC1; GTP-binding, GTPa 96.7 0.0011 3.6E-08 45.7 3.3 24 31-54 4-27 (186)
378 2g6b_A RAS-related protein RAB 96.7 0.00099 3.4E-08 45.7 3.2 26 30-55 8-33 (180)
379 3sfz_A APAF-1, apoptotic pepti 96.7 0.014 4.6E-07 51.3 11.0 105 17-129 132-255 (1249)
380 3t1o_A Gliding protein MGLA; G 96.7 0.0012 4E-08 45.9 3.5 26 31-56 13-38 (198)
381 3tkl_A RAS-related protein RAB 96.7 0.001 3.6E-08 46.3 3.3 26 30-55 14-39 (196)
382 1z0f_A RAB14, member RAS oncog 96.7 0.0011 3.7E-08 45.3 3.3 25 31-55 14-38 (179)
383 4gzl_A RAS-related C3 botulinu 96.7 0.0011 3.8E-08 47.1 3.4 26 29-54 27-52 (204)
384 3def_A T7I23.11 protein; chlor 96.7 0.002 7E-08 47.9 5.0 38 18-55 22-59 (262)
385 2gf0_A GTP-binding protein DI- 96.7 0.0014 4.7E-08 45.8 3.8 26 29-54 5-30 (199)
386 2p5s_A RAS and EF-hand domain 96.7 0.0013 4.6E-08 46.3 3.7 27 29-55 25-51 (199)
387 3lxx_A GTPase IMAP family memb 96.7 0.0011 3.7E-08 48.4 3.3 26 29-54 26-51 (239)
388 1z06_A RAS-related protein RAB 96.7 0.0012 4.1E-08 46.0 3.4 25 30-54 18-42 (189)
389 3pqc_A Probable GTP-binding pr 96.7 0.0011 3.9E-08 45.9 3.3 24 32-55 23-46 (195)
390 2efe_B Small GTP-binding prote 96.7 0.0011 3.7E-08 45.5 3.0 26 30-55 10-35 (181)
391 1yrb_A ATP(GTP)binding protein 96.7 0.0016 5.6E-08 47.8 4.1 26 30-55 12-37 (262)
392 2b6h_A ADP-ribosylation factor 96.7 0.0015 5E-08 46.0 3.7 26 29-54 26-51 (192)
393 2iwr_A Centaurin gamma 1; ANK 96.6 0.0011 3.7E-08 45.6 2.9 26 30-55 5-30 (178)
394 1xx6_A Thymidine kinase; NESG, 96.6 0.0019 6.4E-08 46.5 4.2 28 29-56 5-32 (191)
395 1p6x_A Thymidine kinase; P-loo 96.6 0.00089 3.1E-08 52.3 2.7 27 31-57 6-32 (334)
396 3sop_A Neuronal-specific septi 96.6 0.0011 3.7E-08 50.1 3.1 24 33-56 3-26 (270)
397 3ihw_A Centg3; RAS, centaurin, 96.6 0.0016 5.4E-08 45.6 3.7 27 29-55 17-43 (184)
398 2y8e_A RAB-protein 6, GH09086P 96.6 0.00096 3.3E-08 45.6 2.5 23 32-54 14-36 (179)
399 3oes_A GTPase rhebl1; small GT 96.6 0.0012 4.2E-08 46.5 3.2 27 29-55 21-47 (201)
400 3c5c_A RAS-like protein 12; GD 96.6 0.0014 4.8E-08 45.9 3.4 27 29-55 18-44 (187)
401 2fh5_B SR-beta, signal recogni 96.6 0.0014 4.8E-08 46.6 3.5 27 29-55 4-30 (214)
402 1r8s_A ADP-ribosylation factor 96.6 0.0016 5.4E-08 44.0 3.6 22 34-55 2-23 (164)
403 1ls1_A Signal recognition part 96.6 0.0016 5.5E-08 49.7 3.9 26 31-56 97-122 (295)
404 2j37_W Signal recognition part 96.6 0.0015 5E-08 53.8 3.9 27 30-56 99-125 (504)
405 4bas_A ADP-ribosylation factor 96.6 0.0013 4.3E-08 46.0 3.1 26 29-54 14-39 (199)
406 2q6t_A DNAB replication FORK h 96.6 0.0019 6.4E-08 51.9 4.5 45 19-64 188-238 (444)
407 2fna_A Conserved hypothetical 96.6 0.0026 8.8E-08 48.3 5.1 31 33-63 31-63 (357)
408 2a5j_A RAS-related protein RAB 96.6 0.0014 4.9E-08 45.8 3.3 26 30-55 19-44 (191)
409 3t5g_A GTP-binding protein RHE 96.6 0.00093 3.2E-08 46.0 2.3 24 31-54 5-28 (181)
410 1z6t_A APAF-1, apoptotic prote 96.6 0.003 1E-07 51.9 5.7 38 17-54 132-169 (591)
411 1qvr_A CLPB protein; coiled co 96.6 0.0011 3.9E-08 57.3 3.2 24 33-56 589-612 (854)
412 3reg_A RHO-like small GTPase; 96.6 0.0014 4.7E-08 45.9 3.1 27 29-55 20-46 (194)
413 2xtp_A GTPase IMAP family memb 96.6 0.0015 5E-08 48.3 3.4 27 29-55 19-45 (260)
414 2h17_A ADP-ribosylation factor 96.6 0.0013 4.3E-08 45.7 2.8 26 30-55 19-44 (181)
415 2cxx_A Probable GTP-binding pr 96.6 0.0014 4.7E-08 45.4 2.9 23 33-55 2-24 (190)
416 1x3s_A RAS-related protein RAB 96.5 0.0014 4.8E-08 45.5 2.9 25 31-55 14-38 (195)
417 1gwn_A RHO-related GTP-binding 96.5 0.0016 5.4E-08 46.6 3.2 27 29-55 25-51 (205)
418 1ko7_A HPR kinase/phosphatase; 96.5 0.0029 9.9E-08 49.1 4.8 33 31-64 143-175 (314)
419 1xp8_A RECA protein, recombina 96.5 0.0015 5E-08 51.6 3.2 49 17-65 58-112 (366)
420 2fv8_A H6, RHO-related GTP-bin 96.5 0.0013 4.3E-08 46.8 2.6 32 24-55 17-48 (207)
421 1u0l_A Probable GTPase ENGC; p 96.5 0.0015 5.3E-08 49.8 3.2 33 32-67 169-201 (301)
422 3cph_A RAS-related protein SEC 96.5 0.0021 7E-08 45.4 3.7 25 30-54 18-42 (213)
423 3io5_A Recombination and repai 96.5 0.002 6.9E-08 50.3 3.9 48 18-66 11-69 (333)
424 2xxa_A Signal recognition part 96.5 0.0022 7.4E-08 51.7 4.2 27 30-56 98-124 (433)
425 2fg5_A RAB-22B, RAS-related pr 96.5 0.0014 4.9E-08 45.9 2.8 26 30-55 21-46 (192)
426 3k53_A Ferrous iron transport 96.5 0.0017 5.9E-08 48.5 3.3 24 32-55 3-26 (271)
427 1w5s_A Origin recognition comp 96.5 0.0016 5.4E-08 50.7 3.2 27 30-56 48-76 (412)
428 2q3h_A RAS homolog gene family 96.5 0.0021 7.1E-08 45.1 3.6 26 29-54 17-42 (201)
429 1tf7_A KAIC; homohexamer, hexa 96.5 0.0014 4.9E-08 53.7 3.1 37 19-55 268-304 (525)
430 2qu8_A Putative nucleolar GTP- 96.5 0.0023 7.7E-08 46.3 3.8 26 30-55 27-52 (228)
431 3dz8_A RAS-related protein RAB 96.5 0.002 6.8E-08 45.0 3.4 25 31-55 22-46 (191)
432 2o52_A RAS-related protein RAB 96.5 0.0015 5.3E-08 46.1 2.8 26 29-54 22-47 (200)
433 2gf9_A RAS-related protein RAB 96.5 0.0019 6.6E-08 45.0 3.3 24 32-55 22-45 (189)
434 3lxw_A GTPase IMAP family memb 96.4 0.0019 6.6E-08 47.8 3.4 26 29-54 18-43 (247)
435 1ega_A Protein (GTP-binding pr 96.4 0.0017 5.9E-08 49.5 3.2 25 30-54 6-30 (301)
436 2x77_A ADP-ribosylation factor 96.4 0.0014 4.8E-08 45.6 2.4 25 30-54 20-44 (189)
437 2j0v_A RAC-like GTP-binding pr 96.4 0.0023 8E-08 45.3 3.6 26 30-55 7-32 (212)
438 3llu_A RAS-related GTP-binding 96.4 0.0016 5.6E-08 45.8 2.7 28 29-56 17-44 (196)
439 2h57_A ADP-ribosylation factor 96.4 0.0016 5.4E-08 45.4 2.5 27 30-56 19-45 (190)
440 1nij_A Hypothetical protein YJ 96.4 0.0016 5.5E-08 50.1 2.8 24 32-55 4-27 (318)
441 2dpy_A FLII, flagellum-specifi 96.4 0.0033 1.1E-07 50.7 4.8 35 21-56 147-181 (438)
442 1zbd_A Rabphilin-3A; G protein 96.4 0.0023 7.9E-08 45.0 3.4 25 31-55 7-31 (203)
443 3cbq_A GTP-binding protein REM 96.4 0.0017 5.6E-08 46.0 2.6 23 31-53 22-44 (195)
444 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0021 7.2E-08 53.1 3.6 26 29-54 44-69 (538)
445 3b60_A Lipid A export ATP-bind 96.4 0.0011 3.7E-08 55.1 1.8 34 23-56 360-393 (582)
446 2ew1_A RAS-related protein RAB 96.4 0.002 6.8E-08 46.0 3.0 27 29-55 23-49 (201)
447 3kta_A Chromosome segregation 96.4 0.0028 9.6E-08 44.1 3.7 24 33-56 27-50 (182)
448 2rcn_A Probable GTPase ENGC; Y 96.4 0.0023 7.7E-08 50.5 3.5 24 31-54 214-237 (358)
449 4a1f_A DNAB helicase, replicat 96.4 0.003 1E-07 49.4 4.1 38 17-55 32-69 (338)
450 3upu_A ATP-dependent DNA helic 96.4 0.0051 1.7E-07 49.5 5.6 23 34-56 47-69 (459)
451 3qf4_B Uncharacterized ABC tra 96.4 0.0014 4.6E-08 54.8 2.2 35 22-56 371-405 (598)
452 2il1_A RAB12; G-protein, GDP, 96.3 0.0021 7.1E-08 45.1 2.9 23 32-54 26-48 (192)
453 1mky_A Probable GTP-binding pr 96.3 0.0059 2E-07 48.9 5.8 44 12-55 151-203 (439)
454 3f9v_A Minichromosome maintena 96.3 0.00086 2.9E-08 56.1 0.9 25 34-58 329-353 (595)
455 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0025 8.7E-08 44.9 3.3 24 31-54 7-30 (206)
456 2fu5_C RAS-related protein RAB 96.3 0.0013 4.4E-08 45.4 1.6 25 30-54 6-30 (183)
457 2ffh_A Protein (FFH); SRP54, s 96.3 0.003 1E-07 50.8 3.9 26 31-56 97-122 (425)
458 2r8r_A Sensor protein; KDPD, P 96.3 0.004 1.4E-07 46.1 4.3 34 31-64 5-43 (228)
459 1knx_A Probable HPR(Ser) kinas 96.3 0.002 6.9E-08 49.9 2.7 33 31-64 146-178 (312)
460 2cjw_A GTP-binding protein GEM 96.3 0.003 1E-07 44.5 3.5 25 31-55 5-29 (192)
461 3bgw_A DNAB-like replicative h 96.3 0.0034 1.2E-07 50.7 4.1 37 28-64 193-234 (444)
462 2yv5_A YJEQ protein; hydrolase 96.3 0.003 1E-07 48.3 3.6 24 32-56 165-188 (302)
463 1jwy_B Dynamin A GTPase domain 96.3 0.002 6.8E-08 48.8 2.6 26 30-55 22-47 (315)
464 1of1_A Thymidine kinase; trans 96.3 0.0019 6.5E-08 51.3 2.5 27 31-57 48-74 (376)
465 3e1s_A Exodeoxyribonuclease V, 96.2 0.0028 9.5E-08 52.8 3.5 25 32-56 204-228 (574)
466 2yl4_A ATP-binding cassette SU 96.2 0.0014 4.7E-08 54.6 1.7 34 23-56 361-394 (595)
467 1vt4_I APAF-1 related killer D 96.2 0.018 6.3E-07 51.5 8.7 38 16-54 135-172 (1221)
468 2obl_A ESCN; ATPase, hydrolase 96.2 0.0033 1.1E-07 49.2 3.6 35 21-56 61-95 (347)
469 2gco_A H9, RHO-related GTP-bin 96.2 0.0028 9.5E-08 44.8 3.0 25 31-55 24-48 (201)
470 1e2k_A Thymidine kinase; trans 96.2 0.0018 6E-08 50.6 2.0 26 32-57 4-29 (331)
471 3j16_B RLI1P; ribosome recycli 96.2 0.0027 9.1E-08 53.3 3.2 27 29-55 100-126 (608)
472 2f7s_A C25KG, RAS-related prot 96.2 0.0035 1.2E-07 44.6 3.4 25 30-54 23-47 (217)
473 2aka_B Dynamin-1; fusion prote 96.2 0.0068 2.3E-07 45.3 5.2 40 16-55 6-49 (299)
474 2hup_A RAS-related protein RAB 96.2 0.0029 9.9E-08 44.8 2.9 26 30-55 27-52 (201)
475 3ozx_A RNAse L inhibitor; ATP 96.2 0.0032 1.1E-07 52.0 3.4 27 29-55 22-48 (538)
476 2a5y_B CED-4; apoptosis; HET: 96.2 0.0065 2.2E-07 49.9 5.3 38 17-54 136-174 (549)
477 3q3j_B RHO-related GTP-binding 96.1 0.0042 1.4E-07 44.5 3.7 26 30-55 25-50 (214)
478 3szr_A Interferon-induced GTP- 96.1 0.0028 9.5E-08 53.1 3.0 24 31-54 44-67 (608)
479 3a1s_A Iron(II) transport prot 96.1 0.003 1E-07 47.1 2.9 24 31-54 4-27 (258)
480 3cpj_B GTP-binding protein YPT 96.1 0.0037 1.3E-07 44.9 3.2 26 30-55 11-36 (223)
481 2atx_A Small GTP binding prote 96.1 0.0039 1.3E-07 43.5 3.2 24 32-55 18-41 (194)
482 4a82_A Cystic fibrosis transme 96.1 0.0011 3.8E-08 55.0 0.4 33 24-56 359-391 (578)
483 4dhe_A Probable GTP-binding pr 96.1 0.0019 6.5E-08 46.1 1.5 26 30-55 27-52 (223)
484 3euj_A Chromosome partition pr 96.0 0.0033 1.1E-07 51.4 3.0 30 26-56 24-53 (483)
485 2wkq_A NPH1-1, RAS-related C3 96.0 0.0059 2E-07 46.1 4.2 31 24-54 147-177 (332)
486 2g3y_A GTP-binding protein GEM 96.0 0.0046 1.6E-07 44.7 3.5 25 30-54 35-59 (211)
487 3qf4_A ABC transporter, ATP-bi 96.0 0.0014 4.9E-08 54.5 0.8 33 24-56 361-393 (587)
488 3bk7_A ABC transporter ATP-bin 96.0 0.0038 1.3E-07 52.4 3.1 26 29-54 114-139 (607)
489 3iby_A Ferrous iron transport 96.0 0.0042 1.4E-07 46.3 3.0 23 33-55 2-24 (256)
490 1t9h_A YLOQ, probable GTPase E 96.0 0.0011 3.9E-08 51.1 -0.1 24 30-53 171-194 (307)
491 3ozx_A RNAse L inhibitor; ATP 96.0 0.0033 1.1E-07 51.9 2.7 25 30-54 292-316 (538)
492 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0041 1.4E-07 51.3 3.2 25 30-54 310-334 (538)
493 2qnr_A Septin-2, protein NEDD5 96.0 0.0039 1.3E-07 47.6 2.9 23 32-54 18-40 (301)
494 3r7w_A Gtpase1, GTP-binding pr 95.9 0.0052 1.8E-07 46.9 3.5 25 31-55 2-26 (307)
495 3bk7_A ABC transporter ATP-bin 95.9 0.005 1.7E-07 51.6 3.6 25 30-54 380-404 (607)
496 3b1v_A Ferrous iron uptake tra 95.9 0.0056 1.9E-07 46.1 3.5 23 32-54 3-25 (272)
497 3gj0_A GTP-binding nuclear pro 95.9 0.0041 1.4E-07 44.4 2.7 26 30-55 13-39 (221)
498 4ag6_A VIRB4 ATPase, type IV s 95.9 0.0057 1.9E-07 48.0 3.6 25 31-55 34-58 (392)
499 3bs4_A Uncharacterized protein 95.9 0.0034 1.2E-07 47.4 2.2 49 17-65 6-59 (260)
500 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.0072 2.5E-07 41.4 3.7 23 32-54 23-45 (149)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.96 E-value=7.5e-29 Score=184.86 Aligned_cols=105 Identities=36% Similarity=0.603 Sum_probs=97.7
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCC
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~ 107 (141)
.-+++++|+|+|||||||+|+|+.|+++||+.|+|++|++|+++..++++|+.++.+++.|.++|++++.+++.+++.+.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~ 104 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKL 104 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred -CCCCeEEEeCCCCCHHHHHhccccc
Q 032438 108 -SCQKGFILDGFPRTEVQAQKVSPSS 132 (141)
Q Consensus 108 -~~~~g~IldG~P~~~~q~~~l~~~~ 132 (141)
++..|||+|||||+..|++.|++.+
T Consensus 105 ~~~~~g~ilDGfPRt~~Qa~~l~~~~ 130 (217)
T 3umf_A 105 VDKNCHFLIDGYPRELDQGIKFEKEV 130 (217)
T ss_dssp TTTCSEEEEETBCSSHHHHHHHHHHT
T ss_pred cccccCcccccCCCcHHHHHHHHHhC
Confidence 4568999999999999999998754
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.95 E-value=1.1e-27 Score=177.25 Aligned_cols=97 Identities=48% Similarity=0.798 Sum_probs=91.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
++|+|+|||||||+|+|+.|+++||+.|+|+++++|++++.++++|..++.++.+|.++|++++.+++.+++.+. .|
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~---~~ 77 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKH---GN 77 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSS---SC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccC---Cc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999664 58
Q ss_pred EEEeCCCCCHHHHHhccccc
Q 032438 113 FILDGFPRTEVQAQKVSPSS 132 (141)
Q Consensus 113 ~IldG~P~~~~q~~~l~~~~ 132 (141)
||+|||||+..|++.|++.+
T Consensus 78 ~ilDGfPRt~~Qa~~l~~~l 97 (206)
T 3sr0_A 78 VIFDGFPRTVKQAEALDEML 97 (206)
T ss_dssp EEEESCCCSHHHHHHHHHHH
T ss_pred eEecCCchhHHHHHHHHhhH
Confidence 99999999999999986543
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.92 E-value=8.3e-25 Score=164.17 Aligned_cols=99 Identities=51% Similarity=0.931 Sum_probs=94.2
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCC
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK 111 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~ 111 (141)
..+.-|+|+|||||||+|+.|+++||+.|+++++++++++..++++|+.++.++.+|.++|++++.+++.++|.+.++.+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~ 87 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN 87 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999887888
Q ss_pred eEEEeCCCCCHHHHHhccc
Q 032438 112 GFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 112 g~IldG~P~~~~q~~~l~~ 130 (141)
|||||||||+..|++.|++
T Consensus 88 g~ILDGfPRt~~Qa~~L~~ 106 (230)
T 3gmt_A 88 GYLFDGFPRTIAQADAMKE 106 (230)
T ss_dssp CEEEESCCCSHHHHHHHHH
T ss_pred CeEecCCCCcHHHHHHHHH
Confidence 9999999999999999875
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.91 E-value=3.8e-24 Score=161.06 Aligned_cols=124 Identities=52% Similarity=0.948 Sum_probs=112.3
Q ss_pred hhcCCCCchhHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhh
Q 032438 7 ANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 86 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~ 86 (141)
++|++++..+.+.++..++.....+|.+|+|+|+|||||||+++.|+++||+.|+++++++++....+++.+..+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~ 83 (243)
T 3tlx_A 4 ENLENFSTIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIIN 83 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred chhhhcchHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHh
Confidence 45778999999999999888777789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHhccc
Q 032438 87 KGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 87 ~g~~ip~~~~~~ll~~~l~~~~~~~g~IldG~P~~~~q~~~l~~ 130 (141)
+|..+|++++..++..++...++..+||+||||++..|++.+++
T Consensus 84 ~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~ 127 (243)
T 3tlx_A 84 EGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNK 127 (243)
T ss_dssp TTCCCCHHHHHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHH
Confidence 99999999999999999988777889999999999999998765
No 5
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.84 E-value=1.2e-20 Score=139.25 Aligned_cols=102 Identities=47% Similarity=0.855 Sum_probs=91.1
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCC
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~ 108 (141)
+.++..|+|+|+|||||||+++.|++++|+.++++++++++....+++.+..+++++.+|..+|++++.+++..++....
T Consensus 2 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 81 (217)
T 3be4_A 2 NSKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGV 81 (217)
T ss_dssp GGGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 34567899999999999999999999999999999999999888889999999999999999999999999999988766
Q ss_pred CCCeEEEeCCCCCHHHHHhccc
Q 032438 109 CQKGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 109 ~~~g~IldG~P~~~~q~~~l~~ 130 (141)
+..+||+||||++..|++.+.+
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~ 103 (217)
T 3be4_A 82 CVNGFVLDGFPRTIPQAEGLAK 103 (217)
T ss_dssp TTTCEEEESCCCSHHHHHHHHH
T ss_pred cCCCEEEeCCCCCHHHHHHHHH
Confidence 6789999999999888887764
No 6
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.83 E-value=2.4e-20 Score=136.85 Aligned_cols=99 Identities=49% Similarity=0.904 Sum_probs=92.5
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
++|+|+|+|||||||+++.|++++|+.+++.++++++....+++.+..+.+++..|..+|++++..++..++...++..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999988777789
Q ss_pred EEEeCCCCCHHHHHhcccc
Q 032438 113 FILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 113 ~IldG~P~~~~q~~~l~~~ 131 (141)
||+||||++..|++.+.+.
T Consensus 81 ~ildg~p~~~~~~~~~~~~ 99 (216)
T 3dl0_A 81 FLLDGFPRTVAQAEALEEI 99 (216)
T ss_dssp EEEESCCCSHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHH
Confidence 9999999999999887653
No 7
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.83 E-value=2.8e-20 Score=138.58 Aligned_cols=103 Identities=51% Similarity=0.959 Sum_probs=92.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCC
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~ 108 (141)
..++..|+|+|+|||||||+++.|+++|++.++++++++++....+++.+..+++++..|..++++++.+++..++....
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 34567899999999999999999999999999999999999888888999999999999999999999999999998765
Q ss_pred CCCeEEEeCCCCCHHHHHhcccc
Q 032438 109 CQKGFILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 109 ~~~g~IldG~P~~~~q~~~l~~~ 131 (141)
+..|||+||||++..|++.|++.
T Consensus 93 ~~~g~ildg~~~~~~~~~~l~~~ 115 (233)
T 1ak2_A 93 CKNGFLLDGFPRTVRQAEMLDDL 115 (233)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHH
T ss_pred ccCcEEEeCCCCCHHHHHHHHHH
Confidence 66799999999999988876653
No 8
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.83 E-value=3.8e-20 Score=136.42 Aligned_cols=101 Identities=51% Similarity=0.963 Sum_probs=90.4
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhc-CCC
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK-KPS 108 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~-~~~ 108 (141)
+++..|+|+|+|||||||+++.|++++++.++++++++++....+++.+..+++++..|..+|++.+..++..++. ...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999999999999999999888889999999999999999999999999999886 444
Q ss_pred CCCeEEEeCCCCCHHHHHhccc
Q 032438 109 CQKGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 109 ~~~g~IldG~P~~~~q~~~l~~ 130 (141)
+..+||+||||++..|++.+.+
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~ 103 (220)
T 1aky_A 82 CKNGFILDGFPRTIPQAEKLDQ 103 (220)
T ss_dssp GGSCEEEESCCCSHHHHHHHHH
T ss_pred cCCCeEEeCCCCCHHHHHHHHH
Confidence 5679999999999988876654
No 9
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.82 E-value=5.9e-20 Score=134.67 Aligned_cols=99 Identities=49% Similarity=0.875 Sum_probs=92.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
++|+|+|+|||||||+++.|++++|+.+++.++++++....+++.+..+.+++..|..+|++++..++..++....+..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999988766789
Q ss_pred EEEeCCCCCHHHHHhcccc
Q 032438 113 FILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 113 ~IldG~P~~~~q~~~l~~~ 131 (141)
||+||||++..|++.+.+.
T Consensus 81 ~ildg~p~~~~~~~~l~~~ 99 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSL 99 (216)
T ss_dssp EEEESCCCSHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHH
Confidence 9999999999999887663
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.81 E-value=1.1e-19 Score=133.60 Aligned_cols=98 Identities=47% Similarity=0.844 Sum_probs=89.5
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
++|+|+|+|||||||+++.|++.+|+.++++++++++.+..+++.+..+++++..|..+|++++..++..++....+..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 36899999999999999999999999999999999998888889999999999999999999999999999977655679
Q ss_pred EEEeCCCCCHHHHHhccc
Q 032438 113 FILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 113 ~IldG~P~~~~q~~~l~~ 130 (141)
||+||||++..|++.+.+
T Consensus 81 ~i~dg~~~~~~~~~~l~~ 98 (214)
T 1e4v_A 81 FLLDGFPRTIPQADAMKE 98 (214)
T ss_dssp EEEESCCCSHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHh
Confidence 999999999998887754
No 11
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.78 E-value=1.5e-18 Score=126.06 Aligned_cols=103 Identities=36% Similarity=0.731 Sum_probs=90.5
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCC
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~ 107 (141)
....|..|+|+|+|||||||+++.|++.+|+.++++++++++....+++.+..+.+++.+|..++++....++..++...
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 95 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP 95 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc
Confidence 35667899999999999999999999999999999999999988888888999999999999999998888888888664
Q ss_pred CCCCeEEEeCCCCCHHHHHhccc
Q 032438 108 SCQKGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 108 ~~~~g~IldG~P~~~~q~~~l~~ 130 (141)
....+||+||||++..+.+.+.+
T Consensus 96 ~~~~~vIldg~~~~~~~~~~l~~ 118 (201)
T 2cdn_A 96 DAANGFILDGYPRSVEQAKALHE 118 (201)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHH
T ss_pred cCCCeEEEECCCCCHHHHHHHHH
Confidence 45578999999999888776554
No 12
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.78 E-value=6.7e-19 Score=129.88 Aligned_cols=100 Identities=42% Similarity=0.799 Sum_probs=88.4
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCC-
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC- 109 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~- 109 (141)
.+..|+|+|+|||||||+++.|++++++.+++++++++.....+++.|..+.+++.+|..+|++....++..++.....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ 83 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcccc
Confidence 4578999999999999999999999999999999999998888888999999999999999999888888888765332
Q ss_pred CCeEEEeCCCCCHHHHHhccc
Q 032438 110 QKGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 110 ~~g~IldG~P~~~~q~~~l~~ 130 (141)
..+||+||||++..+++.+.+
T Consensus 84 ~~~~vidg~~~~~~~~~~l~~ 104 (222)
T 1zak_A 84 ENGWLLDGYPRSYSQAMALET 104 (222)
T ss_dssp HTCEEEESCCCSHHHHHHHHT
T ss_pred CCcEEEECCCCCHHHHHHHHH
Confidence 468999999999988887765
No 13
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.77 E-value=1.1e-18 Score=129.38 Aligned_cols=97 Identities=43% Similarity=0.826 Sum_probs=87.2
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCCCe
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~~g 112 (141)
+.|+|+|+|||||||+++.|++.+|+.+++.++++++.+..+++.+..+++++.+|..+|++++..++..++.+.+ ..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~-g~~ 79 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG-KDG 79 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC-TTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc-CCe
Confidence 3689999999999999999999999999999999999877788899999999999999999999999998886643 579
Q ss_pred EEEeCCCCCHHHHHhccc
Q 032438 113 FILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 113 ~IldG~P~~~~q~~~l~~ 130 (141)
||+||||++..|++.+.+
T Consensus 80 vIlDg~~~~~~~~~~l~~ 97 (223)
T 2xb4_A 80 WLLDGFPRNTVQAQKLFE 97 (223)
T ss_dssp EEEESCCCSHHHHHHHHH
T ss_pred EEEeCCcCCHHHHHHHHH
Confidence 999999999888887754
No 14
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.76 E-value=4e-18 Score=126.23 Aligned_cols=100 Identities=38% Similarity=0.625 Sum_probs=87.4
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCC
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~ 109 (141)
.++..|+|+|+|||||||+++.|++++|+.+++++++++.....+++.|..+.+++.+|..++++....++.+++.+. .
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-~ 83 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-T 83 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-T
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-c
Confidence 346789999999999999999999999999999999999988788888999999999999999998888888888653 3
Q ss_pred CCeEEEeCCCCCHHHHHhccc
Q 032438 110 QKGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 110 ~~g~IldG~P~~~~q~~~l~~ 130 (141)
..+||+||||++..|++.+.+
T Consensus 84 ~~~~vid~~~~~~~~~~~l~~ 104 (227)
T 1zd8_A 84 QYSWLLDGFPRTLPQAEALDR 104 (227)
T ss_dssp TSCEEEESCCCSHHHHHHHHT
T ss_pred CCCEEEeCCCCCHHHHHHHHH
Confidence 468999999999988876654
No 15
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.74 E-value=1.2e-17 Score=120.03 Aligned_cols=101 Identities=40% Similarity=0.679 Sum_probs=86.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCC-C
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP-S 108 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~-~ 108 (141)
.++..|+|+|+|||||||+++.|++.+|+.+++.+++++.....+++.+..+.+.+.+|..++++....++...+... .
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence 356799999999999999999999999999999999999988777888999999999999999988877777776542 2
Q ss_pred CCCeEEEeCCCCCHHHHHhccc
Q 032438 109 CQKGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 109 ~~~g~IldG~P~~~~q~~~l~~ 130 (141)
...++|+||||++..+++.+.+
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~ 108 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFER 108 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHH
T ss_pred cCCcEEEeCCCCCHHHHHHHHH
Confidence 3578999999999988876544
No 16
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.73 E-value=5.3e-17 Score=116.05 Aligned_cols=98 Identities=31% Similarity=0.536 Sum_probs=87.3
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~ 110 (141)
.+..|+|+|+|||||||+++.|++.+|+.+++.+++++.....+++.+..+.+++..|...++++...++...+... ..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~-~~ 83 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN-QG 83 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS-TT
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc-CC
Confidence 45789999999999999999999999999999999999988788888999999999999999988888888888664 45
Q ss_pred CeEEEeCCCCCHHHHHhcc
Q 032438 111 KGFILDGFPRTEVQAQKVS 129 (141)
Q Consensus 111 ~g~IldG~P~~~~q~~~l~ 129 (141)
.++|+||||++..+.+.+.
T Consensus 84 ~~vi~d~~~~~~~~~~~~~ 102 (194)
T 1qf9_A 84 KNFLVDGFPRNEENNNSWE 102 (194)
T ss_dssp CCEEEETCCCSHHHHHHHH
T ss_pred CCEEEeCcCCCHHHHHHHH
Confidence 6899999999998877663
No 17
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=118.02 Aligned_cols=100 Identities=33% Similarity=0.661 Sum_probs=86.2
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCC-CC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP-SC 109 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~-~~ 109 (141)
++..|+|+|+|||||||+++.|++++|+.+++.+++++.....+++.+..+.+++.+|..++++.+..++...+... ..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence 35689999999999999999999999999999999999988777888889999999999999988888887776543 23
Q ss_pred CCeEEEeCCCCCHHHHHhccc
Q 032438 110 QKGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 110 ~~g~IldG~P~~~~q~~~l~~ 130 (141)
..+||+||||++..+++.+.+
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~ 111 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGR 111 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHH
T ss_pred CccEEEeCCCCCHHHHHHHHH
Confidence 578999999999888776654
No 18
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.72 E-value=4e-17 Score=116.69 Aligned_cols=94 Identities=44% Similarity=0.784 Sum_probs=83.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~ 110 (141)
++..|+|+|+|||||||+++.|++++|+.+++.+++++..+..+++.+..+.+++.+|...+++....++...+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~---- 78 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE---- 78 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC----
Confidence 4678999999999999999999999999999999999988777888899999999999999998888888887742
Q ss_pred CeEEEeCCCCCHHHHHhcc
Q 032438 111 KGFILDGFPRTEVQAQKVS 129 (141)
Q Consensus 111 ~g~IldG~P~~~~q~~~l~ 129 (141)
+||+||||++..+.+.+.
T Consensus 79 -~~i~dg~~~~~~~~~~l~ 96 (186)
T 3cm0_A 79 -RVIFDGFPRTLAQAEALD 96 (186)
T ss_dssp -EEEEESCCCSHHHHHHHH
T ss_pred -CEEEeCCCCCHHHHHHHH
Confidence 599999999988776544
No 19
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.71 E-value=8e-17 Score=116.84 Aligned_cols=103 Identities=29% Similarity=0.588 Sum_probs=84.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH-ccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCC
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~-~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~ 107 (141)
..++..|+|+|+|||||||+++.|++++|+.+++.|++++.... .++..+..++.++.+|...++++...++.+.+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 45567999999999999999999999999999999999998764 56778888898898999998887777777666432
Q ss_pred --CCCCeEEEeCCCCCHHHHHhcccc
Q 032438 108 --SCQKGFILDGFPRTEVQAQKVSPS 131 (141)
Q Consensus 108 --~~~~g~IldG~P~~~~q~~~l~~~ 131 (141)
....+||+||||++..++..+++.
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~ 117 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERD 117 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHh
Confidence 122689999999999988776553
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.70 E-value=1.5e-16 Score=113.78 Aligned_cols=99 Identities=26% Similarity=0.553 Sum_probs=80.6
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH-ccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcC---
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK--- 106 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~-~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~--- 106 (141)
+|..|+|+|+|||||||+++.|++++|+.+++.+++++.... ..+..+..+++++.+|...++++...++...+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 367899999999999999999999999999999999998765 3566788888889899999988777766655432
Q ss_pred -CCCCCeEEEeCCCCCHHHHHhcc
Q 032438 107 -PSCQKGFILDGFPRTEVQAQKVS 129 (141)
Q Consensus 107 -~~~~~g~IldG~P~~~~q~~~l~ 129 (141)
.....+||+||||++..+.+.+.
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~ 105 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWN 105 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHH
Confidence 12356899999999988766543
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.61 E-value=9.1e-15 Score=109.35 Aligned_cols=99 Identities=35% Similarity=0.602 Sum_probs=82.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCC
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~ 109 (141)
.++.+|+|+|+|||||||+++.|+++||+.+++.+++++.........+..+..+++++..+|+..+.+.+...+... .
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~-~ 103 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR-R 103 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC-T
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-C
Confidence 357899999999999999999999999999999999998876655667777888888899999988888888777543 3
Q ss_pred CCeEEEeCCCCCHHHHHhcc
Q 032438 110 QKGFILDGFPRTEVQAQKVS 129 (141)
Q Consensus 110 ~~g~IldG~P~~~~q~~~l~ 129 (141)
..+|++||||++..+++.+.
T Consensus 104 ~~~~il~g~~~~~~~~~~l~ 123 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALD 123 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHH
Confidence 46899999999987766654
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.45 E-value=3.8e-13 Score=93.95 Aligned_cols=93 Identities=22% Similarity=0.305 Sum_probs=68.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHcc----CcchHHHHHHhhc-CCcchHHHHHHHHHHHhcCC
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----TPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKP 107 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~----~~~g~~i~~~l~~-g~~ip~~~~~~ll~~~l~~~ 107 (141)
+.|+|+|+|||||||+++.| +++|+.++++++++++..... .........+... |. +...+++...+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~- 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGD----GVVARLCVEELGT- 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCT----THHHHHHHHHHCS-
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCH----HHHHHHHHHHHHh-
Confidence 57999999999999999999 999999999999999876543 2223333333332 33 3455566666643
Q ss_pred CCCCeEEEeCCCCCHHHHHhccccc
Q 032438 108 SCQKGFILDGFPRTEVQAQKVSPSS 132 (141)
Q Consensus 108 ~~~~g~IldG~P~~~~q~~~l~~~~ 132 (141)
.....+|+||+ ++..+.+.+.+.+
T Consensus 76 ~~~~~vi~dg~-~~~~~~~~l~~~~ 99 (179)
T 3lw7_A 76 SNHDLVVFDGV-RSLAEVEEFKRLL 99 (179)
T ss_dssp CCCSCEEEECC-CCHHHHHHHHHHH
T ss_pred cCCCeEEEeCC-CCHHHHHHHHHHh
Confidence 34578999999 9999888887654
No 23
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.36 E-value=9.8e-13 Score=92.80 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=61.1
Q ss_pred CeEEEEECCCCCChhhHHHHHHh-hhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCC
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKD-EYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~-~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~ 110 (141)
|..|+|.|+|||||||+++.|++ .+++.+++.+.+... ....+. +. ...+...+.....++..+++...+......
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQS-IMAHEE-RD-EYKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHH-HTTSCC-GG-GCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHH-hhCCCc-cc-hhhhchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 46899999999999999999999 689999998655443 332111 10 000001111222345556677777443445
Q ss_pred CeEEEeCCCCCHHHHHhcc
Q 032438 111 KGFILDGFPRTEVQAQKVS 129 (141)
Q Consensus 111 ~g~IldG~P~~~~q~~~l~ 129 (141)
.++|+||++.+..+.+.+.
T Consensus 79 ~~vi~d~~~~~~~~~~~l~ 97 (181)
T 1ly1_A 79 KGVIISDTNLNPERRLAWE 97 (181)
T ss_dssp CEEEECSCCCSHHHHHHHH
T ss_pred CeEEEeCCCCCHHHHHHHH
Confidence 7999999999877665554
No 24
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=2.6e-11 Score=87.75 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=57.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhc-CCcchHHHHHHH
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGI 99 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~-g~~ip~~~~~~l 99 (141)
.+..++....++.+|+|+|+|||||||+++.|++.+|+.+++.++++.... +..+.+.+.. |.....++..++
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~------g~~i~~~~~~~~~~~~~~~e~~~ 87 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF------HKTVGELFTERGEAGFRELERNM 87 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh------CCcHHHHHHhcChHHHHHHHHHH
Confidence 355666666777899999999999999999999999999999999987642 2223333322 222222333334
Q ss_pred HHHHhcCCCCCCeEEEe---CCCCCHHHHHhc
Q 032438 100 IDEAMKKPSCQKGFILD---GFPRTEVQAQKV 128 (141)
Q Consensus 100 l~~~l~~~~~~~g~Ild---G~P~~~~q~~~l 128 (141)
+.... ....+|++ |.+......+.+
T Consensus 88 l~~l~----~~~~~vi~~ggg~~~~~~~~~~l 115 (199)
T 3vaa_A 88 LHEVA----EFENVVISTGGGAPCFYDNMEFM 115 (199)
T ss_dssp HHHHT----TCSSEEEECCTTGGGSTTHHHHH
T ss_pred HHHHh----hcCCcEEECCCcEEccHHHHHHH
Confidence 44333 23567888 666655555444
No 25
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.20 E-value=3.8e-11 Score=91.67 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=60.0
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh-CccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhcCCCCC
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~-~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~~~~~~ 110 (141)
|..|+|+|+|||||||+++.|++++ ++.+++.|++ +......+. +.. ..+...+...+.+.+.+.+...+.+....
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~-r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH-HHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHH-HHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 4689999999999999999999985 9999999954 443332111 100 01111112223344455666666332345
Q ss_pred CeEEEeCCCCCHHHHHhcc
Q 032438 111 KGFILDGFPRTEVQAQKVS 129 (141)
Q Consensus 111 ~g~IldG~P~~~~q~~~l~ 129 (141)
.++|+||++.+..+.+.+.
T Consensus 79 ~~vi~d~~~~~~~~~~~l~ 97 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWE 97 (301)
T ss_dssp CEEEECSCCCCHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHH
Confidence 7899999998876655554
No 26
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.13 E-value=4.4e-11 Score=84.99 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=37.4
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhC-----ccccchHHHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVA 72 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~ll~~~~~ 72 (141)
+..|+|+|+|||||||+++.|+++++ +.+++.++++++...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~ 48 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK 48 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHh
Confidence 46899999999999999999999998 999999999987654
No 27
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.09 E-value=2e-10 Score=81.59 Aligned_cols=39 Identities=31% Similarity=0.335 Sum_probs=35.5
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhC-----ccccchHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAV 71 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~ll~~~~ 71 (141)
+.|+|+|+|||||||+++.|+++++ +.+++.++++++.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~ 45 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence 4799999999999999999999998 88999999998766
No 28
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.08 E-value=8.1e-10 Score=78.61 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=36.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
.++..|+|+|+|||||||+++.|++.+|..+++.|++....
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~ 43 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVM 43 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHH
Confidence 35679999999999999999999999999999998876543
No 29
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.06 E-value=2.4e-10 Score=82.54 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=57.1
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHH---HHHHHHHHhcC
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL---VVGIIDEAMKK 106 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~---~~~ll~~~l~~ 106 (141)
..+..|+|+|+|||||||+++.|++.+|..+++.+++...... ..+..|....+.. ....+...+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~l~~~~-- 83 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENI----------RKMSEGIPLTDDDRWPWLAAIGERL-- 83 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHH----------HHHHHTCCCCHHHHHHHHHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhH----------HHHhcCCCCCchhhHHHHHHHHHHH--
Confidence 3467899999999999999999999999999999987533211 1111222222211 122333333
Q ss_pred CCCCCeEEEeCCCCCHHHHHhccc
Q 032438 107 PSCQKGFILDGFPRTEVQAQKVSP 130 (141)
Q Consensus 107 ~~~~~g~IldG~P~~~~q~~~l~~ 130 (141)
....++|+|+........+.+.+
T Consensus 84 -~~~~~vivd~~~~~~~~~~~l~~ 106 (202)
T 3t61_A 84 -ASREPVVVSCSALKRSYRDKLRE 106 (202)
T ss_dssp -TSSSCCEEECCCCSHHHHHHHHH
T ss_pred -hcCCCEEEECCCCCHHHHHHHHH
Confidence 33467899987777666666654
No 30
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.04 E-value=1.7e-09 Score=78.98 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=37.1
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
+.+|.|+|+|||||||+++.|++.||+.+++.|++.+...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~ 44 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA 44 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhh
Confidence 4689999999999999999999999999999999998754
No 31
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.03 E-value=2.7e-11 Score=87.67 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=58.1
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHH-H-----
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE-A----- 103 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~-~----- 103 (141)
.++..|+|+|+|||||||+++.|++.++..+++++ ++++. ..+++.+..+.+++..+..+++.....+... +
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999988777763 32211 1234556667777766666665443333221 1
Q ss_pred -hcCC-CCCCeEEEeCCCCC
Q 032438 104 -MKKP-SCQKGFILDGFPRT 121 (141)
Q Consensus 104 -l~~~-~~~~g~IldG~P~~ 121 (141)
+... .....+|+|+|+.+
T Consensus 86 ~i~~~l~~~~~vi~D~~~~~ 105 (212)
T 2wwf_A 86 EIKSLLLKGIWVVCDRYAYS 105 (212)
T ss_dssp HHHHHHHHTCEEEEECCHHH
T ss_pred HHHHHHhCCCEEEEecchhh
Confidence 1110 12357899999864
No 32
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.01 E-value=8.1e-10 Score=78.53 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=41.9
Q ss_pred EEEEECCCCCChhhHHHHHHhhh---CccccchHHHHHHHHHccCcchHHHHHHhhcCCcchH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~---~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~ 93 (141)
.|+|+|+|||||||+++.|++++ |+.+++.++ ...+..+..+.+.+.+|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~ 58 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDER 58 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHH
Confidence 68999999999999999999998 899998753 1234456666777777766555
No 33
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.00 E-value=9.3e-10 Score=77.74 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=34.9
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
+|+|+|+|||||||+++.|++++++.+++.+++++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~ 42 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQK 42 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHH
Confidence 6999999999999999999999999999999998764
No 34
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.99 E-value=7.9e-10 Score=83.51 Aligned_cols=103 Identities=18% Similarity=0.262 Sum_probs=69.5
Q ss_pred HHHHHhhhcCCC---CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhc-CCcchHHH
Q 032438 20 ELLRRMKCASKP---DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDL 95 (141)
Q Consensus 20 ~~~~~~~~~~~~---~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~-g~~ip~~~ 95 (141)
.+++.++....+ +.+|+|+|++||||||+++.|++.+|+.+++.+++++.... +..+.++++. |.....+.
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-----g~~i~~i~~~~ge~~fr~~ 107 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-----GTSVAEIFEHFGESVFREK 107 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-----TSCHHHHHHHHCHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-----CccHHHHHHHhCcHHHHHH
Confidence 467777776676 88999999999999999999999999999999999887541 2234444433 55444445
Q ss_pred HHHHHHHHhcCCCCCCeEEEe--CCCCCHHHHHhcc
Q 032438 96 VVGIIDEAMKKPSCQKGFILD--GFPRTEVQAQKVS 129 (141)
Q Consensus 96 ~~~ll~~~l~~~~~~~g~Ild--G~P~~~~q~~~l~ 129 (141)
..+++.+..... ...+|.+ |.+...+..+.+.
T Consensus 108 e~~~l~~l~~~~--~~~Via~GgG~v~~~~~~~~l~ 141 (250)
T 3nwj_A 108 ETEALKKLSLMY--HQVVVSTGGGAVIRPINWKYMH 141 (250)
T ss_dssp HHHHHHHHHHHC--SSEEEECCGGGGGSHHHHHHHT
T ss_pred HHHHHHHHHhhc--CCcEEecCCCeecCHHHHHHHh
Confidence 555555544331 1233433 5666666666554
No 35
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.98 E-value=6.5e-10 Score=78.97 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=36.2
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
++|+|+|+|||||||+++.|++++|+.+++.|+++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~ 41 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT 41 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc
Confidence 579999999999999999999999999999999988753
No 36
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.98 E-value=1.5e-09 Score=75.86 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=35.4
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
++|+|+|+|||||||+++.|++++|+.+++.+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~ 38 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKR 38 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHH
Confidence 36999999999999999999999999999999998775
No 37
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.97 E-value=9.8e-10 Score=77.04 Aligned_cols=39 Identities=28% Similarity=0.334 Sum_probs=36.1
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
.+|+|+|+|||||||+++.|++++|+.+++.|++.++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~ 46 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV 46 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh
Confidence 479999999999999999999999999999999998753
No 38
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.96 E-value=6.3e-10 Score=79.97 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=53.2
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh-CccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHH-----------H
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-----------G 98 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~-~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~-----------~ 98 (141)
++..|+|+|+|||||||+++.|++++ |+.++++++.. ..+..+..+++++..+..++..... +
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 77 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFAS 77 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998 57777653211 1234556667777665444433221 1
Q ss_pred HHHHHhcCCCCCCeEEEeCCCCC
Q 032438 99 IIDEAMKKPSCQKGFILDGFPRT 121 (141)
Q Consensus 99 ll~~~l~~~~~~~g~IldG~P~~ 121 (141)
.+...+. ....+|+|+||++
T Consensus 78 ~i~~~l~---~~~~vi~Dr~~~s 97 (204)
T 2v54_A 78 FIQEQLE---QGITLIVDRYAFS 97 (204)
T ss_dssp HHHHHHH---TTCEEEEESCHHH
T ss_pred HHHHHHH---CCCEEEEECchhh
Confidence 1222222 2357899999865
No 39
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.95 E-value=6.3e-10 Score=83.52 Aligned_cols=92 Identities=18% Similarity=0.269 Sum_probs=52.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC--ccccchHHHHHHH-----HHccCcchHHHHHHhhcCCcchHHHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAA-----VAAKTPLGIKAKEAMDKGELVSDDLVVGIID 101 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~--~~~is~~~ll~~~-----~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~ 101 (141)
..+|..|+|+|+|||||||+++.|++.++ ..+++.+.+-... +. ...|..+.++.+. .....+..++.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~--~~~g~~~~~~~~~---~~~~~~~~~~~ 103 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQ--QEYGKDSVEYTKD---FAGKMVESLVT 103 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHH--TTCSSTTHHHHHH---HHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHH--HHcCchHHHHhhH---HHHHHHHHHHH
Confidence 34578999999999999999999999986 4566666542210 11 1111111122111 01122233333
Q ss_pred HHhcCCCCCCeEEEeCCCCCHHHHHhc
Q 032438 102 EAMKKPSCQKGFILDGFPRTEVQAQKV 128 (141)
Q Consensus 102 ~~l~~~~~~~g~IldG~P~~~~q~~~l 128 (141)
..+.. ..+||+||++++..+...+
T Consensus 104 ~~~~~---g~~vVid~~~~~~~~~~~~ 127 (253)
T 2p5t_B 104 KLSSL---GYNLLIEGTLRTVDVPKKT 127 (253)
T ss_dssp HHHHT---TCCEEEECCTTSSHHHHHH
T ss_pred HHHhc---CCCEEEeCCCCCHHHHHHH
Confidence 33322 2489999999887654433
No 40
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.94 E-value=1e-09 Score=78.45 Aligned_cols=43 Identities=23% Similarity=0.514 Sum_probs=38.8
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhh-hCccccchHHHHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDE-YCLCHLATGDMLRAA 70 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~-~~~~~is~~~ll~~~ 70 (141)
...++.+|+|+|+|||||||+++.|++. +|+.++++|+++++.
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~ 49 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN 49 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh
Confidence 3456779999999999999999999999 899999999999874
No 41
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.91 E-value=1.5e-09 Score=77.06 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=36.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
+++.|+|+|+|||||||+++.|++++|+.+++.|+++.+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~ 43 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKR 43 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHH
Confidence 3568999999999999999999999999999999998764
No 42
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.87 E-value=2.7e-09 Score=80.41 Aligned_cols=84 Identities=20% Similarity=0.159 Sum_probs=52.6
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh---hCcccc--chHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHHHHHHHhc
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE---YCLCHL--ATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~---~~~~~i--s~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~ll~~~l~ 105 (141)
++..|+|+|+|||||||+++.|++. +|..++ +.|++.... .. +. ..+...........+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l-~~---~~-------~~~e~~~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF-PV---WK-------EKYEEFIKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS-SS---CC-------GGGHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH-hh---hh-------HHHHHHHHHHHHHHHHHHhh
Confidence 3678999999999999999999997 677776 776654321 11 00 01111122233344555553
Q ss_pred CCCCCCeEEEeCCCCCHHHHHhcc
Q 032438 106 KPSCQKGFILDGFPRTEVQAQKVS 129 (141)
Q Consensus 106 ~~~~~~g~IldG~P~~~~q~~~l~ 129 (141)
. ..+|+|+.+....+.+.+.
T Consensus 72 ~----~~vIiD~~~~~~~~~~~l~ 91 (260)
T 3a4m_A 72 N----YWVIVDDTNYYNSMRRDLI 91 (260)
T ss_dssp T----SEEEECSCCCSHHHHHHHH
T ss_pred C----CEEEEeCCcccHHHHHHHH
Confidence 2 6899999877665555444
No 43
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.85 E-value=5.3e-09 Score=80.18 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=33.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh--CccccchHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDML 67 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~--~~~~is~~~ll 67 (141)
..+|..|+|.|+|||||||+++.|++++ +..++|.|++.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 3457899999999999999999999998 78889987664
No 44
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.82 E-value=4.2e-09 Score=74.57 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=37.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
++..|+|+|+|||||||+++.|++.+|+.+++.++++++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~ 49 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence 4568999999999999999999999999999999998875
No 45
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.81 E-value=2.4e-08 Score=74.88 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=38.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
..++.+|.|+||+||||||+++.|++++|+.+++.+++.+...
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~ 66 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLA 66 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhH
Confidence 3567899999999999999999999999999999999997643
No 46
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.80 E-value=4.4e-09 Score=73.60 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=35.4
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
+.|+|+|+|||||||+++.|++++|+.+++.+++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~ 40 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT 40 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH
Confidence 47999999999999999999999999999999998765
No 47
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.79 E-value=4.4e-09 Score=76.58 Aligned_cols=39 Identities=31% Similarity=0.453 Sum_probs=36.6
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
|..|.|+|++||||||+++.|++.+|+.+++.+++.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 568999999999999999999999999999999999874
No 48
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.79 E-value=2.5e-09 Score=80.00 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=34.8
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCcc----------ccchHHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC----------HLATGDMLR 68 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~----------~is~~~ll~ 68 (141)
...++.+|.|+|+|||||||+|+.|++.+|+. +++.|++.+
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 34567899999999999999999999999987 689998875
No 49
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.79 E-value=1.1e-08 Score=76.04 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=56.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCc--cccchHHHHHHHHHccCcchHHHHHHhhcCCcchHHHHHH-HHHHHhc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG-IIDEAMK 105 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~--~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~~~~~-ll~~~l~ 105 (141)
..++..|+|.|+|||||||+++.|++.++. .++... ...+++.+..+++++.++..+++....- ....+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~ 96 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE 96 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999999863 333321 2234667888888888887544433221 1122221
Q ss_pred CC--------CCCCeEEEe----------CCCCCHHH
Q 032438 106 KP--------SCQKGFILD----------GFPRTEVQ 124 (141)
Q Consensus 106 ~~--------~~~~g~Ild----------G~P~~~~q 124 (141)
.. .....+|+| |+|++..+
T Consensus 97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~ 133 (229)
T 4eaq_A 97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGV 133 (229)
T ss_dssp HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCH
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCH
Confidence 10 123578999 99987543
No 50
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.78 E-value=1.7e-08 Score=71.95 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=40.6
Q ss_pred EEEEECCCCCChhhHHHHHHhhh---CccccchHHHHHHHHHccCcchHHHHHHhhcCCcchH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~---~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~ 93 (141)
.|+|+|++||||||+++.|++.+ |+.++...+ ..+++.+..+++.+..+...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~ 58 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPK 58 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHH
Confidence 68999999999999999999999 988886543 2334556667777766665554
No 51
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.77 E-value=4.1e-09 Score=76.13 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=41.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCCcchHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~ 94 (141)
+++..|+|+|+|||||||+++.|+++++..+++++.+ ++. ..+++.+..+..++..+..+++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~ 69 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RFP-ERSTEIGKLLSSYLQKKSDVEDH 69 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESS-CTTSHHHHHHHHHHTTSSCCCHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe-eCC-CCCCcHHHHHHHHHhcCCCCCHH
Confidence 4577999999999999999999999887665554221 100 01234455566666655555544
No 52
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.75 E-value=8e-09 Score=72.36 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=35.6
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
+..|+|+|+|||||||+++.|+..++..+++.+++++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~ 42 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR 42 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHH
Confidence 458999999999999999999999999999999988764
No 53
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.73 E-value=1.4e-08 Score=73.67 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=38.7
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHc
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA 73 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~ 73 (141)
...+|.|+|++||||||+++.|++.+|+.+++.|++.++....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE 53 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence 3468999999999999999999999999999999999887653
No 54
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.73 E-value=1.3e-08 Score=72.79 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=37.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
..++..|.|+|++||||||+++.|++. |+.+++.|++.+...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~ 46 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR 46 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence 456789999999999999999999998 999999999988765
No 55
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.72 E-value=1.6e-08 Score=73.63 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=37.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHc
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA 73 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~ 73 (141)
++..|.|+|++||||||+++.|++ +|+.+++.|++.+.....
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~ 44 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEP 44 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTST
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcC
Confidence 457899999999999999999998 899999999998875443
No 56
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.72 E-value=6.5e-09 Score=72.44 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=33.1
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRA 69 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~ 69 (141)
..|+|+|+|||||||+++.|++++++.+++.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~ 38 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA 38 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccc
Confidence 3789999999999999999999999999988876653
No 57
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.71 E-value=2.4e-08 Score=70.44 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
++..|+|+|+|||||||+++.|++.++..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4578999999999999999999999998887
No 58
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.71 E-value=1.8e-08 Score=72.45 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=26.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
++..|+|.|+|||||||+++.|+++++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 46789999999999999999999998763
No 59
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.71 E-value=2e-08 Score=76.61 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=38.4
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCc
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP 76 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~ 76 (141)
.+..|.|+|+|||||||+++.|+ .+|+.+++.|++.++....+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~ 118 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGP 118 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTST
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChH
Confidence 36789999999999999999999 6899999999998876554433
No 60
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.68 E-value=1.2e-08 Score=81.97 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=34.0
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
..+..|+|+|+|||||||+++.|++.+++.+++.|++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 3467899999999999999999999999999999886
No 61
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.66 E-value=2.6e-08 Score=71.84 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=34.3
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
.+|.|+|++||||||+++.|++ +|+.+++.|++.+...
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~ 40 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVV 40 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHc
Confidence 4789999999999999999988 8999999999987643
No 62
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.65 E-value=2.7e-08 Score=69.94 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=31.5
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccc--cchHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 69 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~--is~~~ll~~ 69 (141)
+..|+|+|+|||||||+++.|+++++..+ ++.|+++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~ 42 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence 46899999999999999999999987554 457777653
No 63
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.65 E-value=2.9e-08 Score=71.23 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=35.8
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
.|.|+|++||||||+++.|++.+|+.+++.+++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~ 41 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAA 41 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhh
Confidence 89999999999999999999999999999999998754
No 64
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.65 E-value=2.3e-07 Score=66.85 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=34.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll 67 (141)
..++..|+|+|++||||||+++.|+..+|..+++.+++.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~ 64 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFH 64 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccc
Confidence 356789999999999999999999999999999988874
No 65
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.65 E-value=8.6e-08 Score=70.27 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=37.2
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC---ccccchHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAA 70 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~---~~~is~~~ll~~~ 70 (141)
..|..+|+|+|.|||||+|+++.+.+.+| +..+++++-++++
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~ 52 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQ 52 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHH
Confidence 45778999999999999999999988884 7889999999964
No 66
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.64 E-value=2.4e-08 Score=71.81 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=35.1
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~ 72 (141)
.+|.|+|++||||||+++.|++ +|+.+++.|++.++...
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~ 40 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYR 40 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGS
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhc
Confidence 3799999999999999999999 99999999999886543
No 67
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.62 E-value=3.7e-08 Score=73.64 Aligned_cols=42 Identities=29% Similarity=0.335 Sum_probs=37.4
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~ 71 (141)
.++..|+|.|||||||||+++.|++++|+.+++.+.+.+...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 346799999999999999999999999999999999988753
No 68
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.62 E-value=2.6e-08 Score=69.97 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=35.1
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll 67 (141)
+.++..|+|+|+|||||||+++.|+..+|..+++.+++.
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~ 43 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH 43 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGC
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcccc
Confidence 345679999999999999999999999999999998875
No 69
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.58 E-value=6.3e-08 Score=71.59 Aligned_cols=42 Identities=36% Similarity=0.538 Sum_probs=38.0
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
..++.+|.|+|++||||||+++.|++++|+.+++.+++.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 355679999999999999999999999999999999999874
No 70
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.53 E-value=1.3e-07 Score=78.14 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=33.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCc-----cccchHHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL-----CHLATGDMLRAAV 71 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~-----~~is~~~ll~~~~ 71 (141)
..+..|+++|.|||||||+++.|++.++. .+++.|++.+...
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~ 79 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAV 79 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhc
Confidence 34678999999999999999999998853 3468899766643
No 71
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.52 E-value=1.4e-07 Score=69.96 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=37.4
Q ss_pred hcCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH
Q 032438 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (141)
Q Consensus 27 ~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~ 72 (141)
+...+..+|.|.|++||||||+++.||+++|+.+++ +++++....
T Consensus 9 ~m~~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~ 53 (223)
T 3hdt_A 9 FMGNKNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE 53 (223)
T ss_dssp ---CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred ccCCCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence 344456799999999999999999999999999999 777777654
No 72
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.50 E-value=3e-07 Score=67.75 Aligned_cols=51 Identities=18% Similarity=0.103 Sum_probs=42.9
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAM 85 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l 85 (141)
-|-|+|.+||||||+++.|++ +|+++++.|.+.++..+.+.+....+.+.+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~f 61 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTF 61 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHh
Confidence 588999999999999999988 899999999999998876665555554443
No 73
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.45 E-value=7e-08 Score=72.50 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=32.4
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll 67 (141)
+.|+|+|||||||||+|+.|+++++..+++.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 36899999999999999999999999999999875
No 74
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.43 E-value=4.2e-07 Score=67.58 Aligned_cols=63 Identities=21% Similarity=0.170 Sum_probs=40.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchH---HHHHHHHHccCcchHHHHHHhhcCCcchHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG---DMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~---~ll~~~~~~~~~~g~~i~~~l~~g~~ip~~ 94 (141)
.++..|+|.|++||||||+++.|++.++..+++.+ .+.++ -.+++.|..+++++.++...|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~re--p~~t~~g~~ir~~l~~~~~~~~~ 88 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTRE--PGGTRLGETLREILLNQPMDLET 88 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEES--SSSSHHHHHHHHHHHHSCCCHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecC--CCCChHHHHHHHHHHcCCCCHHH
Confidence 46789999999999999999999998844322111 01111 13567788888888887655543
No 75
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.43 E-value=3e-07 Score=66.19 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=34.7
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh---Ccc--ccchHHH
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY---CLC--HLATGDM 66 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~---~~~--~is~~~l 66 (141)
+......++..|+|+|++||||||+++.|+..+ |.. +++.+++
T Consensus 17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 334446778899999999999999999999988 554 7776665
No 76
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.38 E-value=1.7e-07 Score=67.64 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=36.5
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhh-CccccchHHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLR 68 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~-~~~~is~~~ll~ 68 (141)
..+++..|.|+|+|||||||+++.|++.+ ++.+++.|+++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~ 58 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK 58 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence 45667899999999999999999999998 899999998765
No 77
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.37 E-value=3.6e-07 Score=66.48 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=34.7
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~ 70 (141)
.++|.|.|++||||||+++.||+++|+.+++ +++++..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~ 43 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEV 43 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHH
Confidence 3589999999999999999999999999999 8888663
No 78
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.36 E-value=2.8e-07 Score=65.34 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=32.8
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC--ccccchHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLR 68 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~--~~~is~~~ll~ 68 (141)
..++..|+|+|+|||||||+++.|+..++ ..+++.+++..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 47 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence 46678999999999999999999998764 34777777654
No 79
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.31 E-value=4e-07 Score=64.86 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=26.6
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
+.|+|.|+|||||||+++.|+++++..++.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 368999999999999999999999976654
No 80
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.29 E-value=4.6e-07 Score=63.92 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=28.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh---Cccccch
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---CLCHLAT 63 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~---~~~~is~ 63 (141)
.++..|+|+|++||||||+++.|++.+ |+.++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 467899999999999999999999987 8666644
No 81
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.28 E-value=6.8e-07 Score=64.85 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=32.7
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhC------ccccchHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDM 66 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~------~~~is~~~l 66 (141)
...++..|+|+|+|||||||+++.|++.++ +.+++.+.+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 356678999999999999999999999876 777775544
No 82
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.27 E-value=6.5e-07 Score=64.87 Aligned_cols=50 Identities=24% Similarity=0.297 Sum_probs=37.5
Q ss_pred hHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhC-----ccccchHH
Q 032438 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGD 65 (141)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~ 65 (141)
++.+++.+.+.-...++..|.|+||+||||||+++.|+..+. ..+++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 456666666653356778999999999999999999998764 45555554
No 83
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.26 E-value=3.6e-07 Score=71.35 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=32.6
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll 67 (141)
+..|+|+||+||||||++..|+++++..+++.|.+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 468999999999999999999999999999987663
No 84
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.26 E-value=7.7e-07 Score=63.12 Aligned_cols=38 Identities=26% Similarity=0.205 Sum_probs=30.5
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC-----ccccchHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDM 66 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~l 66 (141)
..++..|+|+|+|||||||+++.|++.++ +.+++.+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 45678999999999999999999998874 345665544
No 85
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.24 E-value=1e-06 Score=63.55 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=25.2
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
.++..|+|+|||||||||+++.|++.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4677999999999999999999999873
No 86
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.24 E-value=3e-07 Score=70.50 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=31.2
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhC-----ccccchHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLR 68 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~ll~ 68 (141)
+++..|.|+|++||||||+++.|++.++ +.+++.|++.+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 4567899999999999999999999887 78888888764
No 87
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.21 E-value=6.6e-07 Score=70.26 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=33.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
.++++.|+|+||+||||||++..||++++..+||.|.+
T Consensus 37 ~~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 37 HRKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34567999999999999999999999999999998877
No 88
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.20 E-value=1.3e-06 Score=64.92 Aligned_cols=39 Identities=18% Similarity=0.012 Sum_probs=27.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
++..++....++.+|.|+||+||||||+++.|+..+|..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 466777777888999999999999999999999988865
No 89
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.18 E-value=1.2e-06 Score=64.33 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=39.4
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhC---ccccchHHHHHHHHHccCcchHHHHHHhhcCC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE 89 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~---~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~ 89 (141)
++..|+|.|++||||||+++.|++.++ +.++.+.+ ..++++|..+++++.++.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~ 60 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPS 60 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCC
Confidence 467899999999999999999999874 33333321 135677888888887763
No 90
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.18 E-value=1e-06 Score=63.56 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=31.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC--ccccchHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDML 67 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~--~~~is~~~ll 67 (141)
++++.+|.|+|++||||||+++.|+..++ +.+++.+..+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 45678999999999999999999999888 7777766543
No 91
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.17 E-value=9.7e-07 Score=67.49 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=31.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCcc--ccchHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDML 67 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~--~is~~~ll 67 (141)
.++|..++|.||||+|||++|+.+|+.++.. .++.+++.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~ 73 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE 73 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh
Confidence 4556788899999999999999999998754 45666654
No 92
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.2e-06 Score=70.91 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=30.7
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
+.++|..|++.||||+|||.+|+.+|..++..++.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 46778999999999999999999999999866543
No 93
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.15 E-value=7.7e-07 Score=70.36 Aligned_cols=47 Identities=26% Similarity=0.283 Sum_probs=36.5
Q ss_pred chhHHHHHHHHhhhcCCC--CeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 14 SVDLMTELLRRMKCASKP--DKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~--~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
...+.+.+++.+.....+ .+.|+|+|+|||||||+++.|++.+++.+
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 345666777777644333 34699999999999999999999988777
No 94
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.2e-06 Score=70.68 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=30.7
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
+.++|..|++.||||+|||++|+.+|..+++.++.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 56788899999999999999999999999866543
No 95
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.5e-06 Score=70.41 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=30.9
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
+.++|..|++.||||+|||++|+.+|..+++.++.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 46788999999999999999999999999876543
No 96
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.13 E-value=2.1e-06 Score=60.92 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=30.2
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCc-cccchHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCL-CHLATGDMLR 68 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~-~~is~~~ll~ 68 (141)
..++|+||+||||||+++.|+..++. .+++.+++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 47899999999999999999987754 6788777643
No 97
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.12 E-value=8.7e-07 Score=69.62 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=32.0
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
+.|+|.||+||||||++..|++.++..+++.|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 5899999999999999999999999999998877
No 98
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=1.6e-06 Score=69.54 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=31.3
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccch
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~ 63 (141)
+.++|..|++.||||+|||.+|+.+|..++..++++
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 467788999999999999999999999998765443
No 99
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.11 E-value=1.3e-06 Score=67.94 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=32.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
+.++.|+|.||+||||||++..|+++++..++|.|.+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 4467899999999999999999999999888887764
No 100
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.10 E-value=7.2e-07 Score=67.74 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=29.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh---------CccccchHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY---------CLCHLATGDM 66 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~---------~~~~is~~~l 66 (141)
.+++..++|.||||+|||++|+.+++.+ .+..++..++
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 3455689999999999999999999877 3445555554
No 101
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.10 E-value=9e-06 Score=59.28 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=37.1
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh--CccccchHHHHHHHHHccCcchHHHHHHhhcCCcchH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~--~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~~ip~ 93 (141)
..|+|.|+.||||||+++.|++.+ |..++.+.+ -.+++.+..+++.+.++..++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~ 59 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDI 59 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCH
Confidence 478999999999999999999887 333332211 1235566666666666655554
No 102
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.09 E-value=1.5e-06 Score=64.89 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=38.7
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 86 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~ 86 (141)
++..|+|.|++||||||+++.|++.++...++...+.++ ..++++|..+++++.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~ 79 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVK 79 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHh
Confidence 467999999999999999999999885444442122222 135677788888775
No 103
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.09 E-value=1.4e-06 Score=67.95 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=31.6
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
++.|+|.||+||||||++..|+++++..++|.|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 56899999999999999999999999888887766
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.05 E-value=4.3e-06 Score=58.86 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=33.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh----C--ccccchHHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY----C--LCHLATGDMLRAAV 71 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~----~--~~~is~~~ll~~~~ 71 (141)
.++..++|+||||+||||+++.++..+ | +.+++..+++....
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK 83 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 446799999999999999999998765 3 56688888876543
No 105
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.04 E-value=2.9e-06 Score=60.54 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++..|+|+|++||||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467799999999999999999999876
No 106
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=2.8e-06 Score=68.71 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=31.3
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccch
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~ 63 (141)
..++|..|++.||||+|||.+|+.+|.+++..++++
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 467789999999999999999999999998765443
No 107
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=2.7e-06 Score=69.31 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=31.0
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
+.++|..|++.||||+|||++|+.+|.+++..++.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 46788999999999999999999999999876543
No 108
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.03 E-value=5.1e-06 Score=62.28 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=35.9
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~ 72 (141)
.+|.|+|++||||||+++.|.+.+|+.++++++-+++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 4789999999999999999999999999999988877654
No 109
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.03 E-value=7.7e-06 Score=65.02 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=38.4
Q ss_pred hHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
+.+..+++.++...+++..++|.|||||||||+++.|+..++..++.
T Consensus 153 ~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 153 SVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred HHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 34556677777778888999999999999999999999888655544
No 110
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.02 E-value=3.9e-06 Score=62.01 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=27.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
.++..++|.||||+|||++++.+++.++..++
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45678999999999999999999998875543
No 111
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.02 E-value=6.3e-06 Score=66.86 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=32.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhC-----ccccchHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAA 70 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~ll~~~ 70 (141)
..+..|+++|.|||||||+++.|++.++ ..+++.+++.+..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~ 82 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM 82 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhh
Confidence 4567999999999999999999998864 4567777765553
No 112
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.01 E-value=4.2e-06 Score=63.48 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=25.2
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
..+..++|+||||+||||+++.++..++..
T Consensus 42 ~~~~GvlL~Gp~GtGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 42 VTPAGVLLAGPPGCGKTLLAKAVANESGLN 71 (274)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHcCCC
Confidence 334559999999999999999999887643
No 113
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.00 E-value=4e-06 Score=60.79 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
.+++..|+|+||+||||||+++.|++.+.
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35678999999999999999999998873
No 114
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.99 E-value=4e-06 Score=62.25 Aligned_cols=31 Identities=35% Similarity=0.530 Sum_probs=26.4
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
..+..++|+||||+||||+++.++..++...
T Consensus 43 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~ 73 (257)
T 1lv7_A 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF 73 (257)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCCE
Confidence 3466799999999999999999999887443
No 115
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.97 E-value=4.8e-06 Score=63.65 Aligned_cols=42 Identities=26% Similarity=0.450 Sum_probs=33.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccc--cchHHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRAA 70 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~--is~~~ll~~~ 70 (141)
..++..++|.||||+|||++|+.++..++..+ ++..++....
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 46678999999999999999999999887554 5666766544
No 116
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.97 E-value=2.5e-06 Score=68.45 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=32.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
|++.|+|.||+||||||++..|+++++..++|.|.+
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~ 36 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM 36 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTT
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCCCeEeecCcc
Confidence 456899999999999999999999999888887764
No 117
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.97 E-value=1.1e-05 Score=61.81 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=37.0
Q ss_pred hHHHHHHHHhhh----cCCCCeEEEEECCCCCChhhHHHHHHhhhC-------cccc-chHHHH
Q 032438 16 DLMTELLRRMKC----ASKPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHL-ATGDML 67 (141)
Q Consensus 16 ~~~~~~~~~~~~----~~~~~~~I~i~G~pgsGKstla~~La~~~~-------~~~i-s~~~ll 67 (141)
+.++.+.+.+.. ...++..|.|.|++||||||+++.|+..++ ...+ +.|+.+
T Consensus 11 ~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 345555554432 356678999999999999999999998774 3344 666654
No 118
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.96 E-value=5.3e-06 Score=62.72 Aligned_cols=31 Identities=35% Similarity=0.630 Sum_probs=27.2
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
.++..++|.||||+|||++++.+++.++..+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 3567999999999999999999999987544
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.96 E-value=6.2e-06 Score=61.88 Aligned_cols=32 Identities=31% Similarity=0.603 Sum_probs=28.1
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
.++..++|.||||+|||++++.+++.++..++
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 56778999999999999999999999876543
No 120
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.95 E-value=6.2e-06 Score=58.84 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++..|.|+||+||||||+++.|+..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 456789999999999999999999765
No 121
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.95 E-value=1.4e-05 Score=57.55 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=32.2
Q ss_pred hHHHHHHHHhhh-cCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 16 DLMTELLRRMKC-ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.++.+.+.+.- ...++..|.|+|++||||||+++.|+..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456666666653 24567899999999999999999999865
No 122
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.93 E-value=7e-06 Score=63.13 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=30.4
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhC-------ccccchHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDM 66 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~-------~~~is~~~l 66 (141)
.++.+|.|+|++||||||+++.|+..++ +.+++++..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 6678999999999999999999998766 555555643
No 123
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.93 E-value=1.1e-05 Score=65.24 Aligned_cols=34 Identities=29% Similarity=0.538 Sum_probs=28.6
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
.+.....++..+++.||||+|||++|+.+|+.++
T Consensus 55 ~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 55 LIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp HHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred HHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 3344455678899999999999999999999987
No 124
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.93 E-value=7.3e-06 Score=63.16 Aligned_cols=39 Identities=28% Similarity=0.583 Sum_probs=31.5
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCcc--ccchHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDML 67 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~--~is~~~ll 67 (141)
..++..++|.||||+|||++|+.+++..+.. .++..++.
T Consensus 48 ~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 48 RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 3456789999999999999999999988754 45555554
No 125
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.92 E-value=1.5e-05 Score=61.61 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=36.9
Q ss_pred CCCCchhHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 10 EDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++..... ..+++.++...+++.++.|+||+||||||+++.|+.-+
T Consensus 105 ~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 105 QNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34444332 45678888888999999999999999999999999766
No 126
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.92 E-value=1.1e-05 Score=63.06 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=29.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCcccc--chHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDM 66 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~i--s~~~l 66 (141)
++..++|.||||+|||++|+.+++.++..++ +..++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l 87 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL 87 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHh
Confidence 5678999999999999999999999876554 44444
No 127
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.91 E-value=8.2e-06 Score=57.74 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++..++|+||+||||||+++.|+..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345789999999999999999999865
No 128
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.89 E-value=1.8e-05 Score=54.81 Aligned_cols=37 Identities=16% Similarity=0.396 Sum_probs=27.6
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.++.+.+. ...+..++|.|+||+|||++++.+++.+
T Consensus 31 ~~~l~~~l~--~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 31 IRRTIQVLQ--RRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHHHT--SSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 344444433 2445678999999999999999999875
No 129
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.89 E-value=5e-05 Score=54.11 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=31.9
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAV 71 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~~ 71 (141)
..++|.|+||+|||++++.++..+ .+.+++..+++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK 98 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH
Confidence 789999999999999999999765 345578888776544
No 130
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.89 E-value=8.8e-06 Score=60.94 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=29.1
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
..++..++|.||||+|||++|+.+++..+..++.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~ 94 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK 94 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4566799999999999999999999998866543
No 131
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.88 E-value=8e-06 Score=67.33 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=30.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCc-------cccchHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL-------CHLATGD 65 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~-------~~is~~~ 65 (141)
..+..|+|+|.+||||||+++.|+++++. .+++.|+
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 45689999999999999999999999985 4666555
No 132
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.87 E-value=1.6e-05 Score=62.29 Aligned_cols=31 Identities=32% Similarity=0.559 Sum_probs=27.4
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
.++..++|.||||+|||++|+.+++.++..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 145 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATF 145 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 4577999999999999999999999987554
No 133
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.87 E-value=4.8e-06 Score=61.05 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=21.1
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHH-hhh
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIK-DEY 56 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La-~~~ 56 (141)
.+.+..++....++..|.|+||+||||||+++.|+ ..+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34455666667788899999999999999999999 554
No 134
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.86 E-value=7.4e-06 Score=60.18 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=36.0
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCcccc-chHHHHHHHHHccCcchHHHHHHhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL-ATGDMLRAAVAAKTPLGIKAKEAMD 86 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~i-s~~~ll~~~~~~~~~~g~~i~~~l~ 86 (141)
+..|+|.|++||||||+++.|++.+.-..+ ++ .+.++ -.++++|..+++++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~re--p~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTRE--PGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEES--SCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeC--CCCCHHHHHHHHHHh
Confidence 578999999999999999999988743222 11 01111 135677778887776
No 135
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.86 E-value=8.9e-06 Score=59.49 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=24.3
Q ss_pred HHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 20 ~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..++.++....++..+.|+||+||||||+.+.|+..+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3466777777888999999999999999999999765
No 136
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.86 E-value=1.1e-05 Score=59.71 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=27.2
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCc--cccchHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCL--CHLATGDM 66 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~--~~is~~~l 66 (141)
+..++|+||||+||||+++.++...+. ..++..++
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 445999999999999999999987754 34444443
No 137
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.85 E-value=8.3e-06 Score=60.44 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=25.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
..++..|+|.|++||||||+++.|++.++.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456789999999999999999999987654
No 138
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.85 E-value=8e-06 Score=66.26 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=29.2
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~ 64 (141)
++..|++.||||+||||+++.||+.++..++.++
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 5678999999999999999999999987665443
No 139
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.85 E-value=1.1e-05 Score=62.46 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=26.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh-Ccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-CLC 59 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~-~~~ 59 (141)
..++..|+|.||||+|||++|+.+++.+ +..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 73 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEANNST 73 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCE
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHcCCCc
Confidence 3566899999999999999999999987 543
No 140
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.83 E-value=4.8e-06 Score=62.07 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=27.8
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
...+..++|.||||+|||++|+.+++.++..++.
T Consensus 41 ~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 41 AKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3445679999999999999999999988755443
No 141
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.83 E-value=1.6e-05 Score=55.18 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..+..++|+|+||+|||++++.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445688999999999999999999876
No 142
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.82 E-value=1e-05 Score=68.19 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=32.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh---CccccchH-HHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY---CLCHLATG-DMLRA 69 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~---~~~~is~~-~ll~~ 69 (141)
++..|+|+|.|||||||+++.|++++ |..++.++ +.++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~ 93 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 93 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh
Confidence 56789999999999999999999998 87766653 44443
No 143
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.82 E-value=9.7e-06 Score=61.12 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=26.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
.++..++|.||||+|||++++.+++.++...
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~ 78 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3467899999999999999999999887543
No 144
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.82 E-value=2.3e-05 Score=60.22 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=27.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
..++..++|+||||+|||++|+.+++.++..++
T Consensus 52 ~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 455668999999999999999999998876543
No 145
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.82 E-value=1.1e-05 Score=63.11 Aligned_cols=38 Identities=29% Similarity=0.601 Sum_probs=30.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccc--cchHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDML 67 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~--is~~~ll 67 (141)
.++..|+|.||||+|||++|+.+++.++..+ ++..++.
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 4567899999999999999999999998654 4555554
No 146
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.81 E-value=6.1e-06 Score=61.72 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=27.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh-Ccccc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-CLCHL 61 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~-~~~~i 61 (141)
..++..|+|.|++||||||+++.|++.+ +..++
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 3567899999999999999999999998 55444
No 147
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.81 E-value=2.6e-05 Score=53.28 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.+.++.+.+......+..|+|.|+||+|||++|+.+++..
T Consensus 9 ~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 9 WINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3444544444333445579999999999999999999754
No 148
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.80 E-value=3.1e-06 Score=60.83 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.9
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCc
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
.|+|.|++||||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999998853
No 149
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.79 E-value=1.1e-05 Score=69.67 Aligned_cols=40 Identities=25% Similarity=0.535 Sum_probs=32.8
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCcccc--chHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDML 67 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~i--s~~~ll 67 (141)
...+|..|++.||||+|||++|+.+|..+|...+ +..+++
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 3467899999999999999999999999986654 444554
No 150
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.78 E-value=2e-05 Score=58.07 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=39.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchHHHHHHHHHccCcchHHHHHHhhcCC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE 89 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll~~~~~~~~~~g~~i~~~l~~g~ 89 (141)
++..|+|.|++||||||+++.|++.++.... +.++ -..++++|..+++++....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~----~~~e-p~~~t~~g~~ir~~l~~~~ 57 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK----LLKF-PERSTRIGGLINEYLTDDS 57 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE----EEES-SCTTSHHHHHHHHHHHCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccce----EEEe-cCCCChHHHHHHHHHHhcc
Confidence 5779999999999999999999999975211 1111 1135677777888777643
No 151
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.78 E-value=7.8e-06 Score=57.52 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=26.9
Q ss_pred hcCCCCeEEEEECCCCCChhhHHHHHHhhhCccccchHH
Q 032438 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (141)
Q Consensus 27 ~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ 65 (141)
....++..+.|+||+||||||+++.+.. +...++.+.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~ 40 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDF 40 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHH
Confidence 3456788999999999999999997542 334444443
No 152
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.78 E-value=4.8e-05 Score=58.29 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAA 70 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll~~~ 70 (141)
.+..++|.||||+||||+++.++..+ .+.+++..++....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~ 80 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM 80 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
Confidence 45689999999999999999999865 36677887776543
No 153
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.77 E-value=1.3e-05 Score=62.88 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=27.1
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
.++..++|+||||+|||++|+.+++.++..++
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34668999999999999999999999875443
No 154
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.76 E-value=2e-05 Score=59.32 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=27.0
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCc--cccchHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCL--CHLATGDM 66 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~--~~is~~~l 66 (141)
+..++|+||||+||||+++.++...+. ..++..++
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 445999999999999999999987754 34444443
No 155
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.76 E-value=7e-06 Score=56.11 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhC-ccccchHHHH
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC-LCHLATGDML 67 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~-~~~is~~~ll 67 (141)
.+..+.+.+......+..|+|.|+||+|||++|+.++...+ +..++..++.
T Consensus 12 ~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~ 63 (143)
T 3co5_A 12 AIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYL 63 (143)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCC
Confidence 34444444432223445699999999999999999998765 5556655554
No 156
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.76 E-value=3.5e-05 Score=59.68 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=27.4
Q ss_pred hhcCCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 26 ~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
.....++..++|.||||+|||++|+.+++.++.
T Consensus 64 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 333445679999999999999999999998863
No 157
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.75 E-value=2.2e-05 Score=61.19 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=30.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC-------ccccchHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDML 67 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~-------~~~is~~~ll 67 (141)
..+|.+|.|+||+||||||+++.|+..++ +..++.|...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 34577999999999999999999998764 4456776643
No 158
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.75 E-value=2e-05 Score=58.14 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+|..|+|.|++||||||+++.|++.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999998
No 159
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.75 E-value=4.2e-05 Score=54.67 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=24.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
...+..++|.|+||+||||+++.+++.++
T Consensus 42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44456899999999999999999998764
No 160
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.74 E-value=1.6e-05 Score=58.17 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=29.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
..+..|+|+||+||||||+|..|+++.. ..++.|.+
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 3467899999999999999999999866 66666643
No 161
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.74 E-value=2.9e-05 Score=64.40 Aligned_cols=40 Identities=25% Similarity=0.239 Sum_probs=31.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCc-----cccchHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL-----CHLATGDMLRAA 70 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~-----~~is~~~ll~~~ 70 (141)
..+..|+++|+|||||||+++.|++.++. .+++.|. ++..
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~-ir~~ 414 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV-VRTH 414 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH-HHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH-hhhh
Confidence 44678999999999999999999998863 6677655 4443
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.74 E-value=2.1e-05 Score=60.93 Aligned_cols=30 Identities=37% Similarity=0.526 Sum_probs=25.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
.++..++|.||||+||||+++.++..++..
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 345789999999999999999999988643
No 163
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.74 E-value=1.7e-05 Score=57.10 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..++|+||+||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998754
No 164
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.73 E-value=1.8e-05 Score=56.22 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+..+.|+||+||||||+++.|+..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999999654
No 165
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.73 E-value=5.3e-05 Score=53.60 Aligned_cols=23 Identities=30% Similarity=0.726 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhhHHHHHHhhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++|.|+||+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999865
No 166
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.73 E-value=4.8e-05 Score=54.86 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=29.7
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhC-----ccccchHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDML 67 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~ll 67 (141)
++..++|.||||+||||+++.+++.++ +.+++..++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 567899999999999999999998653 4566665544
No 167
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.73 E-value=2.7e-05 Score=64.99 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=29.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhC------ccccchHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDM 66 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~------~~~is~~~l 66 (141)
.++..|+|+|+|||||||+++.|+++++ +.+++.+.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 4467899999999999999999999876 345554443
No 168
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.73 E-value=3.8e-05 Score=58.68 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=28.0
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
....+..+++.||||+|||++++.+++.++..++.
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence 44556678888889999999999999998755543
No 169
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.71 E-value=5.8e-05 Score=52.84 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=30.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..++...+++.++.|+||.||||||+.+.|+..+
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345566677888999999999999999999999765
No 170
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.70 E-value=1.7e-05 Score=57.31 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..++.-+.....++..+.|+||+||||||+++.|+..
T Consensus 10 G~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 10 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 455666666556788899999999999999999999863
No 171
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.68 E-value=4.5e-05 Score=56.11 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=26.4
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
..++...++|.||||+||||+|..|++.++-..
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 344445799999999999999999998875333
No 172
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.68 E-value=2.4e-05 Score=61.69 Aligned_cols=32 Identities=31% Similarity=0.599 Sum_probs=27.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
.++..++|.||||+|||++|+.++..++..++
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 45679999999999999999999999876543
No 173
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.67 E-value=2.6e-05 Score=55.49 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.0
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
.++.|+||+||||||+.+.|+..+++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999987763
No 174
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.67 E-value=3.3e-05 Score=63.10 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=28.0
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
+.|..|+|+||||+|||++++.++...+.+++.
T Consensus 47 ~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 47 RMPKGILLVGPPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 456679999999999999999999998865543
No 175
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.66 E-value=2.6e-05 Score=62.88 Aligned_cols=41 Identities=24% Similarity=0.491 Sum_probs=29.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh-Cc--cccchHHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-CL--CHLATGDMLRAA 70 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~-~~--~~is~~~ll~~~ 70 (141)
.++..|+|.||||+|||++|+.++..+ +. ..++..++....
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence 466899999999999999999999987 53 445666665543
No 176
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.64 E-value=0.00019 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhhHHHHHHhhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~ 56 (141)
.|+|.|+-||||||+++.|++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999876
No 177
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.63 E-value=3.7e-05 Score=55.92 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
-++..|+|+||+||||||+++.|.+.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999998764
No 178
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.63 E-value=4.4e-05 Score=54.73 Aligned_cols=46 Identities=20% Similarity=0.050 Sum_probs=33.0
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh--CccccchH
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATG 64 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~--~~~~is~~ 64 (141)
..++.-+....+++..++|.|+|||||||++..++... ++.+++.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 34444444456778899999999999999999998633 34455543
No 179
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.62 E-value=5e-05 Score=56.51 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=32.2
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhC-----ccccchHH
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGD 65 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~-----~~~is~~~ 65 (141)
+..+.+.+......+..++|+|+||+|||++|+.+++..+ +..++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 15 FLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp HHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 3344444433233456799999999999999999998653 44555443
No 180
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.62 E-value=2.3e-05 Score=54.24 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=28.9
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh---C--ccccchHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDM 66 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~---~--~~~is~~~l 66 (141)
++..++|+|++|+||||+++.++..+ | ..+++..++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 67789999999999999999999866 5 455555444
No 181
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.61 E-value=6.7e-05 Score=58.01 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=25.1
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..++.+|.|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 5678899999999999999999999755
No 182
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.61 E-value=3e-05 Score=64.46 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=32.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhC------ccccchHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLR 68 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~------~~~is~~~ll~ 68 (141)
..++..|+|+|++||||||+++.|+..++ +.+++.+++..
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 45678999999999999999999999874 44577766643
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=3.7e-05 Score=63.01 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=27.7
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccc
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is 62 (141)
++..++|.||||+|||++|+.+++.+++.++.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 45789999999999999999999999866543
No 184
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.58 E-value=5.9e-05 Score=56.85 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=28.1
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++ ..++..+.|+||+||||||+.+.|+..+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 455555 5677899999999999999999998654
No 185
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.58 E-value=7.1e-05 Score=56.56 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++...++|+||||+|||++|+.+++.+
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 334589999999999999999999876
No 186
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.57 E-value=5.8e-05 Score=57.36 Aligned_cols=31 Identities=39% Similarity=0.648 Sum_probs=26.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
.++..++|.|+||+|||++|+.+++.++...
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~ 66 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4557899999999999999999999887544
No 187
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.57 E-value=4.3e-05 Score=55.61 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+..++.-+.....++..+.|.|+|||||||++..++.
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4556666655677888999999999999999999997
No 188
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.57 E-value=5.1e-05 Score=58.56 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=24.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...+..++|.||||+|||++++.+++.+
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4566799999999999999999999876
No 189
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.56 E-value=8.7e-05 Score=60.74 Aligned_cols=39 Identities=26% Similarity=0.551 Sum_probs=31.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccc--cchHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDML 67 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~--is~~~ll 67 (141)
..++..++|.||||+|||++|+.++..++..+ ++..++.
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 46677899999999999999999999987544 5555554
No 190
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.55 E-value=5.7e-05 Score=54.43 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=23.6
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...++..+.|+||+||||||+.+.|+..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34667899999999999999999998655
No 191
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.55 E-value=5.6e-05 Score=55.57 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++..++|+||+||||||+.+.|+..+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 457799999999999999999999765
No 192
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.54 E-value=4.8e-05 Score=54.78 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=20.3
Q ss_pred EEEECCCCCChhhHHHHHHhhh
Q 032438 35 LILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 35 I~i~G~pgsGKstla~~La~~~ 56 (141)
|+|+||+||||+|+++.|.+++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8899999999999999998765
No 193
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.52 E-value=7.5e-05 Score=58.06 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=25.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..+|..++|.||||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999999999877
No 194
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.51 E-value=0.00013 Score=56.80 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=31.8
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+++.++....++.++.|+|+|||||||+.+.|+..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3466777777888999999999999999999999853
No 195
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.51 E-value=0.00017 Score=55.78 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
+..+.+.+. ..+.+..+++.||||+|||++|+.+++.+.+.
T Consensus 11 ~~~l~~~i~-~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 11 FEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp HHHHHHHHH-TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHH-cCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 344444443 45667789999999999999999999988654
No 196
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.50 E-value=0.00012 Score=59.26 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.....++|+||||+|||++++.+++.+
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 445578999999999999999999886
No 197
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.50 E-value=0.00012 Score=56.80 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...+..++|.||||+|||++++.+++.+
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4556699999999999999999999865
No 198
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.49 E-value=7.2e-05 Score=57.62 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=24.8
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..++..++|.|+||+||||+++.+++.+
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4556799999999999999999999866
No 199
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.48 E-value=8.9e-05 Score=56.12 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=29.0
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+..+.....++..++|.|+||+||||+++.++..+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44555667888999999999999999999988543
No 200
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.47 E-value=0.00019 Score=55.34 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=25.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
.+.+..++|.||||+||||+++.+++.++.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444567899999999999999999998764
No 201
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.47 E-value=0.00017 Score=55.68 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhhHHHHHHhhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++|.||||+||||+++.+++.+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999875
No 202
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.47 E-value=9.9e-05 Score=56.82 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.9
Q ss_pred EEEEECCCCCChhhHHHHHHhhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++|+||+|+||||+++.++..+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999854
No 203
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.46 E-value=0.00011 Score=56.56 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=32.2
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhC------ccccchHHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAV 71 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~------~~~is~~~ll~~~~ 71 (141)
+..++|.||||+|||+++..++..+. +.+++..+++.+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~ 197 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK 197 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence 57899999999999999999987443 44578888877654
No 204
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.46 E-value=6.7e-05 Score=54.74 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.7
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIK 53 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La 53 (141)
...++..+.|+||+||||||+++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56778899999999999999999888
No 205
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.45 E-value=8.1e-05 Score=64.29 Aligned_cols=34 Identities=29% Similarity=0.580 Sum_probs=29.0
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
...++..|+|+||||+||||+++.++..++..++
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i 267 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEE
Confidence 3567789999999999999999999998875543
No 206
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.45 E-value=6.7e-05 Score=53.97 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.5
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
...++..++|+|+|||||||+++.++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567789999999999999999999854
No 207
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.45 E-value=8.5e-05 Score=61.04 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=25.4
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
.|..++|+||||+||||+++.++...+...
T Consensus 63 ip~GvLL~GppGtGKTtLaraIa~~~~~~~ 92 (499)
T 2dhr_A 63 IPKGVLLVGPPGVGKTHLARAVAGEARVPF 92 (499)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356799999999999999999998876443
No 208
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.44 E-value=0.00022 Score=57.40 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=31.5
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh-----C--ccccchHHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY-----C--LCHLATGDMLRAA 70 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~-----~--~~~is~~~ll~~~ 70 (141)
+..++|.||||+||||+++.++..+ + +.+++..++..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~ 175 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 6789999999999999999999865 3 4567877776543
No 209
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=0.00024 Score=53.71 Aligned_cols=23 Identities=39% Similarity=0.748 Sum_probs=21.4
Q ss_pred EEEEECCCCCChhhHHHHHHhhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++|.||||+|||++++.+++.+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 49999999999999999999875
No 210
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=0.00022 Score=53.74 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=22.8
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...+. ++|.||||+|||++++.+++.+
T Consensus 40 ~~~~~-~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 40 GNMPH-MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCe-EEEECcCCCCHHHHHHHHHHHh
Confidence 33344 9999999999999999999875
No 211
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=0.00018 Score=55.16 Aligned_cols=24 Identities=29% Similarity=0.678 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhhHHHHHHhhhC
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~ 57 (141)
.++|.||||+||||+++.+++.++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999998753
No 212
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.41 E-value=7.1e-05 Score=53.71 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=23.2
Q ss_pred EEEECCCCCChhhHHHHHHhhhCc--cccch
Q 032438 35 LILVGPPGSGKGTQSPIIKDEYCL--CHLAT 63 (141)
Q Consensus 35 I~i~G~pgsGKstla~~La~~~~~--~~is~ 63 (141)
|+|+|++|||||++|+.|+.. +. .|+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 799999999999999999977 63 34444
No 213
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.41 E-value=9.9e-05 Score=61.03 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=26.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCcc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~ 59 (141)
.++..++|+||||+||||+++.++..++..
T Consensus 106 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 106 LKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 367899999999999999999999887643
No 214
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.41 E-value=6.5e-05 Score=64.94 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=33.1
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhhCccc--cchHHHHHH
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 69 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~~~~~--is~~~ll~~ 69 (141)
..++..|++.||||+|||.+|+.+|.+.+..+ ++..+++..
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 45678999999999999999999999998665 455566543
No 215
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.40 E-value=0.0002 Score=55.42 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=22.2
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.++|+||||+||||+++.+++.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999876
No 216
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.38 E-value=6.7e-05 Score=54.62 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=32.4
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHH
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGD 65 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ 65 (141)
++.-+.....++..++|.|+|||||||++..++... ++.+++.++
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 344445556778899999999999999998887532 455665543
No 217
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.38 E-value=0.00011 Score=59.53 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=25.5
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
..++|.||||+||||+++.+++.++..++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~ 79 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVE 79 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 68999999999999999999998875543
No 218
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.37 E-value=0.00012 Score=56.25 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++.++.|+|++||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457799999999999999999999755
No 219
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.35 E-value=0.00021 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.726 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhhHHHHHHhhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++|.||||+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999999875
No 220
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.35 E-value=0.00034 Score=54.67 Aligned_cols=36 Identities=31% Similarity=0.368 Sum_probs=27.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.+.....+..+|.|+|+||+||||++..|+..+
T Consensus 68 ~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 68 LLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334443335567899999999999999999998664
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.35 E-value=0.00023 Score=60.78 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.+..++|+||||+|||++|+.|++.+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 445579999999999999999999986
No 222
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.33 E-value=0.00016 Score=51.38 Aligned_cols=26 Identities=23% Similarity=0.028 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..+.+.|.|++||||||++..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999999764
No 223
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.32 E-value=7.9e-05 Score=55.23 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=26.6
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....++..+.|+||+||||||+.+.|+-
T Consensus 23 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3455567888999999999999999999984
No 224
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.32 E-value=0.00018 Score=55.52 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++..|.|+|++||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 456789999999999999999999755
No 225
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.31 E-value=0.00019 Score=55.85 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++.++.|+||+||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999654
No 226
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.31 E-value=0.00019 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..|.|+||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56799999999999999999999654
No 227
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.30 E-value=8.8e-05 Score=56.90 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=24.6
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccc
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~ 60 (141)
..++|.||||+|||++++.+++.++...
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4799999999999999999999887543
No 228
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.28 E-value=0.00041 Score=53.97 Aligned_cols=39 Identities=28% Similarity=0.262 Sum_probs=31.7
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...+.+++.....++.+|.|+|+||+||||+...|+..+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345566666667788999999999999999999998543
No 229
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.27 E-value=0.00019 Score=56.67 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++.+|.|+|++||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 457899999999999999999999755
No 230
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.25 E-value=0.00011 Score=54.60 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=27.5
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+.++....++.++.|+||+||||||+.+.|+.-
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344555678889999999999999999999853
No 231
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.23 E-value=0.00014 Score=53.36 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=24.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+++..|.|.|+.||||||+++.|+..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 466789999999999999999999876
No 232
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.23 E-value=0.00012 Score=54.49 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=27.9
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+.++....++.++.|+||+||||||+.+.|+.-
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345556788899999999999999999999843
No 233
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.23 E-value=0.0002 Score=51.46 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.8
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++.|+|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 478999999999999999999766
No 234
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.21 E-value=0.00012 Score=55.14 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=27.5
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..++....++.++.|+||+||||||+.+.|+--
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344556678899999999999999999999843
No 235
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.21 E-value=8.9e-05 Score=54.55 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=26.1
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....++.++.|+||+||||||+.+.|+-
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445566788999999999999999999984
No 236
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.20 E-value=9.9e-05 Score=56.13 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=28.0
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++.++....++.++.|+||+||||||+.+.|+--
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3445556678899999999999999999999843
No 237
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.20 E-value=0.00025 Score=50.53 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+..++++|+|||||||++..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999997777654
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.19 E-value=0.00011 Score=60.33 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..++.+|.|+|++||||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4567899999999999999999999654
No 239
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.19 E-value=0.00058 Score=51.85 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=29.0
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhCccccchHHH
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~~~~is~~~l 66 (141)
..++|.|++|+|||++++.+++..+..+++....
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~ 65 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCREL 65 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecc
Confidence 5899999999999999999999887667766543
No 240
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.19 E-value=0.00014 Score=57.12 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=29.4
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.++...+++..++|+||+||||||+.+.|+..+
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 5666666778899999999999999999999765
No 241
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.19 E-value=0.00049 Score=55.31 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=28.0
Q ss_pred HHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 20 ~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++..+ . ..+...++|+||+||||||+.+.++..+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 355555 2 3666789999999999999999998765
No 242
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.19 E-value=0.00013 Score=55.20 Aligned_cols=34 Identities=35% Similarity=0.610 Sum_probs=27.9
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.++....++.++.|+||+||||||+.+.|+.-+
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445556778899999999999999999998543
No 243
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.18 E-value=0.00076 Score=51.19 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+...++|.||||+|||+++..|+..+
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34579999999999999999999864
No 244
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.18 E-value=0.00017 Score=54.43 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=26.3
Q ss_pred hhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 25 MKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 25 ~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++....++.++.|+||.||||||+.+.|+--
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445677889999999999999999999953
No 245
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.17 E-value=0.00014 Score=54.95 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=26.7
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.++....++.++.|+||+||||||+.+.|+--
T Consensus 42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 34455677889999999999999999999843
No 246
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.16 E-value=0.00023 Score=55.71 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=30.4
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..++.-+....+++..+.|.|+|||||||++..++..+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444445566788999999999999999999999765
No 247
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.16 E-value=0.00038 Score=54.78 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.0
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.+...++|+||+||||||+.+.++..+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 445599999999999999999998654
No 248
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.16 E-value=0.00012 Score=54.65 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=27.2
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++....++.++.|+||+||||||+.+.|+.-+
T Consensus 27 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 27 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344556778899999999999999999998543
No 249
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.16 E-value=0.00015 Score=54.14 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=26.4
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....++.++.|+||+||||||+.+.|+.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 21 GVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445567788999999999999999999995
No 250
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.15 E-value=0.00012 Score=55.33 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=26.9
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+.++....++.++.|+||+||||||+.+.|+-
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 34455567789999999999999999999984
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.15 E-value=0.00012 Score=63.30 Aligned_cols=32 Identities=31% Similarity=0.585 Sum_probs=27.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhhCcccc
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~~~~~i 61 (141)
.++..++|.||||+|||++++.++..++..++
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i 540 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46678999999999999999999998865443
No 252
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.15 E-value=0.00018 Score=53.62 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=25.2
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....+ .++.|+||+||||||+.+.|+-
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHhC
Confidence 34455567 8999999999999999999994
No 253
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.15 E-value=0.00013 Score=54.69 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=26.8
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.++....++.++.|+||.||||||+.+.|+--
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34555677889999999999999999999843
No 254
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.15 E-value=0.00015 Score=54.47 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+.++....++.++.|+||+||||||+.+.|+.-
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344555677889999999999999999999854
No 255
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.14 E-value=0.00049 Score=52.68 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.+..+.+.+......+..|+|+|+||+|||++|+.+++..
T Consensus 10 ~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 10 AMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp HHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3444544444333456679999999999999999999843
No 256
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.13 E-value=0.00016 Score=55.35 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.6
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhC
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
..++|.|+||+|||++|+.+++.++
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 3599999999999999999998775
No 257
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.13 E-value=0.00031 Score=53.82 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++.+|.|+|++||||||++..|+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998544
No 258
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.13 E-value=0.00014 Score=54.07 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=26.7
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.++....++.++.|+||.||||||+.+.|+--
T Consensus 24 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455677889999999999999999999843
No 259
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.13 E-value=0.00017 Score=54.28 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=26.7
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.++....++.++.|+||.||||||+.+.|+--
T Consensus 33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34455677889999999999999999999843
No 260
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.12 E-value=0.00012 Score=53.67 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=26.6
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.++....++.++.|+||.||||||+.+.|+.-
T Consensus 27 ~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34455677889999999999999999999843
No 261
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.11 E-value=0.00054 Score=55.33 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+|.+|+++|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999654
No 262
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.11 E-value=0.00018 Score=54.29 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=27.5
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+.++....++.++.|+||.||||||+.+.|+--
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344556678889999999999999999999843
No 263
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.10 E-value=0.00037 Score=54.04 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++.+|.|+|++|+||||++..||..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 557799999999999999999999655
No 264
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.10 E-value=0.00031 Score=59.81 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=28.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCcc--ccchHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDM 66 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~--~is~~~l 66 (141)
|...++|.||||+|||++|+.+++.++.. .+++.++
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 34479999999999999999999988744 4455544
No 265
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.10 E-value=0.00033 Score=55.23 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=23.8
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.+-|+.-+++-....++..+|+|+|.+||||||+++.+.--|
T Consensus 16 s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 16 SKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp ---------------CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 344444444434345778999999999999999999986444
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.10 E-value=0.00015 Score=53.46 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=26.7
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.++....++.++.|+||.||||||+.+.|+..
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455667889999999999999999999854
No 267
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.09 E-value=0.00037 Score=49.47 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.+.+.|+|++||||||+.+.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998754
No 268
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.09 E-value=0.0003 Score=55.45 Aligned_cols=50 Identities=12% Similarity=-0.002 Sum_probs=37.6
Q ss_pred hHHHHHHHHhh-hcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHH
Q 032438 16 DLMTELLRRMK-CASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGD 65 (141)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ 65 (141)
-.+.+++.-+. ...+++..+.|.|||||||||++..++..+ .+.+++..+
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 34566666666 567778899999999999999999998653 244566554
No 269
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.09 E-value=0.00026 Score=55.44 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.2
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCc
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
..++.|+|++||||||+++.|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 679999999999999999999977653
No 270
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.09 E-value=0.00039 Score=54.88 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..++..++|+||+||||||+.+.|+..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4667799999999999999999998754
No 271
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.07 E-value=0.00029 Score=58.84 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=28.0
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
.+.+.....++..++|+||||+||||+++.++..+.
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 344444344556999999999999999999998764
No 272
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.07 E-value=0.00043 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+=+..++++|+||||||++|..+..
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHH
Confidence 3466899999999999999988643
No 273
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.06 E-value=0.00017 Score=54.92 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=26.6
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.++....++.++.|+||.||||||+.+.|+-.
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34445667889999999999999999999843
No 274
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.06 E-value=0.00048 Score=53.65 Aligned_cols=39 Identities=13% Similarity=-0.059 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..++.-+....+++..+.|.|+||||||+++..++..
T Consensus 107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555545677889999999999999999999875
No 275
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.05 E-value=0.00051 Score=47.12 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=23.2
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..++.+|+|+|++|+||||+...+..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45678999999999999999999975
No 276
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.05 E-value=0.00026 Score=51.61 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++.++.|+||+||||||+.+.|+-
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999999984
No 277
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.05 E-value=0.00018 Score=53.92 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=27.2
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..++....++.++.|+||.||||||+.+.|+--
T Consensus 17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344555677889999999999999999999843
No 278
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.04 E-value=0.00036 Score=49.98 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=27.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~ 64 (141)
...-|+|.|++|+||||+|..|.++ |...++-|
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD 47 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLVCDD 47 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCC
Confidence 4568999999999999999999875 66655544
No 279
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.03 E-value=0.00054 Score=46.97 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=23.2
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|++|+||||+...+...
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhC
Confidence 345679999999999999999999853
No 280
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.03 E-value=0.00018 Score=53.90 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=26.6
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.++....++.++.|+||+||||||+.+.|+.-
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455677889999999999999999999843
No 281
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.03 E-value=0.00018 Score=55.93 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=29.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..++...+++..+.|+|++||||||+.+.|+..+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456666656677899999999999999999999765
No 282
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.02 E-value=0.00062 Score=47.34 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|++|+||||+...|...
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 355789999999999999999999864
No 283
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.02 E-value=0.00035 Score=55.87 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=27.3
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHH
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIK 53 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La 53 (141)
.+++.-+.....++..+.|.|+|||||||++..++
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 33444444456778899999999999999999776
No 284
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.01 E-value=0.00046 Score=46.75 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
...+|+|+|++|+||||+...+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999853
No 285
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.01 E-value=0.00046 Score=46.47 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.9
Q ss_pred eEEEEECCCCCChhhHHHHHHhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~ 55 (141)
++|+++|++|+||||+...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999864
No 286
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.01 E-value=0.00027 Score=55.81 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=26.4
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....++..+.|+||+||||||+.+.|+-
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHhc
Confidence 3445567788999999999999999999993
No 287
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.01 E-value=0.00049 Score=46.37 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCChhhHHHHHHhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+.+|+|+|++|+||||+...+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998753
No 288
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.00 E-value=0.00058 Score=55.09 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=28.4
Q ss_pred HHHhhhcCCCCeE--EEEECCCCCChhhHHHHHHh
Q 032438 22 LRRMKCASKPDKR--LILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 22 ~~~~~~~~~~~~~--I~i~G~pgsGKstla~~La~ 54 (141)
++.++...+++.. +.|+|++||||||+.+.|+.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 6677777888888 99999999999999999984
No 289
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.00 E-value=0.00075 Score=52.73 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|.|+|+|||||||+...|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999864
No 290
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.00 E-value=0.00047 Score=46.52 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+..+|+|+|++|+||||+...+...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999853
No 291
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.00 E-value=0.00031 Score=55.39 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=26.5
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....++..+.|+||+||||||+.+.|+-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 3455567788999999999999999999993
No 292
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.99 E-value=0.00014 Score=52.88 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=28.2
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+..+++-+..+..++..++|.|+||+|||++|..++.
T Consensus 16 i~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3344444444567788999999999999999988763
No 293
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.99 E-value=0.00057 Score=47.44 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++.+|+|+|++|+||||+.+.|..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457999999999999999999986
No 294
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.98 E-value=0.00052 Score=55.59 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+|.+|+++|++||||||++..||..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999644
No 295
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0004 Score=56.44 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=27.5
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.++....++.++.|+||.||||||+++.|+.-
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 35556778899999999999999999999854
No 296
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.98 E-value=0.00056 Score=48.85 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..+..+|+|+|++|+||||+...|....
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456799999999999999999998643
No 297
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.98 E-value=0.00033 Score=55.74 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=26.5
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....++..+.|+||+||||||+.+.|+-
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 3445567888999999999999999999994
No 298
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.97 E-value=0.00059 Score=49.06 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.+..+|+|+|.+|+||||+...++...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999764
No 299
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.97 E-value=0.00049 Score=47.74 Aligned_cols=26 Identities=15% Similarity=0.414 Sum_probs=21.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+++.+|+|+|+||+||||+...|...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999854
No 300
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.97 E-value=0.00055 Score=46.74 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+..+|+|+|++|+||||+.+.+...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 4578999999999999999999743
No 301
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.97 E-value=0.00039 Score=52.23 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..++..+.|.|+|||||||++..++.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34677999999999999999999885
No 302
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.00065 Score=47.41 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|++|+||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45679999999999999999999864
No 303
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.96 E-value=0.00065 Score=50.17 Aligned_cols=29 Identities=17% Similarity=0.059 Sum_probs=23.5
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...++..++++|+||+||||.+..++.++
T Consensus 8 ~~~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 8 SKKIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp ---CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred ccCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34567899999999999999999888766
No 304
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.96 E-value=0.00055 Score=46.93 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.2
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|++|+||||+...+...
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 345679999999999999999998753
No 305
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.95 E-value=0.00062 Score=48.80 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.+.++|+|+|.+||||||+...|+..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998764
No 306
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.95 E-value=0.00035 Score=55.33 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=26.5
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....++..+.|+||+||||||+.+.|+-
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 3445567788999999999999999999994
No 307
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.95 E-value=0.0005 Score=48.43 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=20.8
Q ss_pred HHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 20 ~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.+++.++. ..+..+|+|+|++|+||||+...+..
T Consensus 12 ~~l~~~~~-~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGL-WNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -------------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhc-cCCccEEEEECCCCCCHHHHHHHHhc
Confidence 33444442 45567999999999999999999986
No 308
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.95 E-value=0.0007 Score=46.00 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
++..+|+|+|++|+||||+...+..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999999975
No 309
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.95 E-value=0.00036 Score=55.11 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=26.5
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....++..+.|+||+||||||+.+.|+-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 3455567788999999999999999999994
No 310
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.95 E-value=0.00055 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCChhhHHHHHHh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+|+|+|++|+||||+.+.+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999985
No 311
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.95 E-value=0.0007 Score=47.19 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+.+..+|+|+|++|+||||+...+...
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999999854
No 312
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.95 E-value=0.0003 Score=55.44 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=26.9
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..++....++..+.|+||+||||||+.+.|+-
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 34455567788999999999999999999983
No 313
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.95 E-value=0.00046 Score=54.09 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=36.0
Q ss_pred HHHHHHHHhh-hcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHH
Q 032438 17 LMTELLRRMK-CASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGD 65 (141)
Q Consensus 17 ~~~~~~~~~~-~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ 65 (141)
.+..++.-+. ....++..+.|.|+|||||||++..++... .+.+++.++
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4455665555 456678899999999999999999998543 355666553
No 314
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.94 E-value=0.00023 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.6
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..+.|+|++||||||+++.|+..|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999765
No 315
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.94 E-value=0.00054 Score=46.01 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCChhhHHHHHHhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+|+++|++|+||||+...+...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999999754
No 316
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.92 E-value=0.00061 Score=58.99 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..+..++|+|+||+|||++++.+++.+
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 344578999999999999999999876
No 317
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.92 E-value=0.00036 Score=57.41 Aligned_cols=35 Identities=29% Similarity=0.158 Sum_probs=27.2
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++.+.....++..++|+||+||||||+.+.|+..+
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34444444566789999999999999999998644
No 318
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.92 E-value=0.00061 Score=55.93 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
+..++|.||||+|||++|+.++...+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 45899999999999999999998763
No 319
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.92 E-value=0.00061 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCChhhHHHHHHhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+|+|+|++||||||+.+.++..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999864
No 320
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.91 E-value=0.0004 Score=54.94 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=26.4
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....++..+.|+||+||||||+.+.|+-
T Consensus 46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 3445567788999999999999999999984
No 321
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.91 E-value=0.00055 Score=46.50 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=22.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|++|+||||+...+...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45679999999999999999999853
No 322
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.91 E-value=0.00058 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCChhhHHHHHHhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+|+|+|++||||||+.+.++..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999864
No 323
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.91 E-value=0.0005 Score=52.98 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=28.7
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..++.-+....+++..++|.|+||||||+++..++..
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3444444445567789999999999999999999864
No 324
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.91 E-value=0.00081 Score=51.70 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=28.6
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~ 64 (141)
.-.++..++|.|+||+||||++..++... .+.+++++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 45667899999999999999999998543 34455543
No 325
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.90 E-value=0.00051 Score=46.52 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCChhhHHHHHHhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+|+|+|++|+||||+...+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998753
No 326
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.89 E-value=0.00054 Score=52.52 Aligned_cols=38 Identities=18% Similarity=0.037 Sum_probs=29.0
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+..++.-+....+++..++|.|+||||||+++..++..
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444444567789999999999999999999853
No 327
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.89 E-value=0.00019 Score=55.38 Aligned_cols=34 Identities=32% Similarity=0.549 Sum_probs=27.6
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.++...+++..+.|+||+||||||+.+.|+.-+
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3344455778899999999999999999998644
No 328
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.88 E-value=0.00033 Score=53.62 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.2
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
...++.++.|+||.||||||+.+.|+.-
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3456789999999999999999999854
No 329
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.86 E-value=0.00063 Score=47.02 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+..+|+|+|++|+||||+...|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999853
No 330
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.86 E-value=0.00077 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCChhhHHHHHHh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+|+|+|.+|+||||+.+.+..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999985
No 331
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.86 E-value=0.00039 Score=55.09 Aligned_cols=31 Identities=35% Similarity=0.551 Sum_probs=26.0
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....++..+.|+||+||||||+.+.|+-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHc
Confidence 3444556788999999999999999999993
No 332
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.85 E-value=0.00029 Score=55.33 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=26.6
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....++..+.|+||+||||||+.+.|+-
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHc
Confidence 4455567888999999999999999999993
No 333
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.84 E-value=0.0014 Score=55.81 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...+..++|+|+||+|||++++.+++.+
T Consensus 204 ~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 204 RRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999876
No 334
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.84 E-value=0.00071 Score=45.83 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.1
Q ss_pred CeEEEEECCCCCChhhHHHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIK 53 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La 53 (141)
..+|+|+|++|+||||+.+.+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999986
No 335
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.84 E-value=0.00076 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCChhhHHHHHHh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+|+|+|++|+||||+...+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999985
No 336
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.84 E-value=0.0004 Score=57.68 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=30.8
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+++.++...+++..+.|+||+||||||+.+.|+.-+
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 566667677888999999999999999999998654
No 337
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.84 E-value=0.00045 Score=55.05 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=26.9
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+.++....++..+.|+||+||||||+.+.|+-
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 34455567789999999999999999999984
No 338
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.83 E-value=0.00079 Score=46.09 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|.+|+||||+...|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34579999999999999999999864
No 339
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.83 E-value=0.00044 Score=49.05 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=23.4
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
...++.+|.|+|++||||||+.+.|+.
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 456678999999999999999998874
No 340
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.82 E-value=0.00066 Score=46.48 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+..+|+|+|++|+||||+...|..
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhc
Confidence 34567999999999999999999864
No 341
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.82 E-value=0.00089 Score=46.23 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.2
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|.+|+||||+...+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 445679999999999999999999854
No 342
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.82 E-value=0.0017 Score=49.74 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.+|.++|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999655
No 343
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.82 E-value=0.0006 Score=47.15 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
....+|+|+|++|+||||+...+...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 44579999999999999999999753
No 344
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.81 E-value=0.00053 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCChhhHHHHHHh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+..+|+|+|++|+||||+...+..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 457999999999999999999985
No 345
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.81 E-value=0.00077 Score=53.02 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=34.7
Q ss_pred HHHHHHHhh-hcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchH
Q 032438 18 MTELLRRMK-CASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (141)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~ 64 (141)
+..++.-+. ....++..++|.|+||+||||+|..++... .+.+++..
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 445555554 345677899999999999999999998643 46677764
No 346
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.81 E-value=0.00078 Score=52.60 Aligned_cols=35 Identities=14% Similarity=0.027 Sum_probs=27.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh--hCccccch
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE--YCLCHLAT 63 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~--~~~~~is~ 63 (141)
..++..++|.||||+|||++|..++.. ..+.+++.
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 344567899999999999999999964 33556666
No 347
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.81 E-value=0.00084 Score=46.19 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|++|+||||+...|...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhC
Confidence 345679999999999999999999853
No 348
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.80 E-value=0.00062 Score=46.17 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+..+|+|+|++|+||||+.+.+...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999854
No 349
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.80 E-value=0.00044 Score=52.15 Aligned_cols=29 Identities=31% Similarity=0.554 Sum_probs=24.7
Q ss_pred hhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 25 MKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 25 ~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
++.... +.++.|+||+||||||+.+.|+-
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 444556 88999999999999999999984
No 350
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.80 E-value=0.00068 Score=47.34 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.4
Q ss_pred eEEEEECCCCCChhhHHHHHHh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~ 54 (141)
.+|+|+|++|+||||+.+.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999985
No 351
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.80 E-value=0.00069 Score=46.39 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+..+|+|+|++|+||||+...+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3579999999999999999999743
No 352
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.79 E-value=0.0016 Score=48.62 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=28.7
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+.+++.+......+..+|+++|.+|+||||+...|...
T Consensus 25 l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 25 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 33344445444556789999999999999999999853
No 353
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.79 E-value=0.00082 Score=46.89 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=22.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|++|+||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34679999999999999999999753
No 354
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.79 E-value=0.00087 Score=46.36 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.1
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
....+|+|+|++|+||||+...|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 3457999999999999999999985
No 355
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.78 E-value=0.00086 Score=47.24 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=22.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|++|+||||+...|...
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcC
Confidence 345679999999999999999999754
No 356
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.78 E-value=0.00084 Score=46.70 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=22.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+.+..+|+|+|++|+||||+.+.+...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 345679999999999999999999864
No 357
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.78 E-value=0.00082 Score=48.18 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=22.3
Q ss_pred CchhHHHHHHHHhh-hcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 13 PSVDLMTELLRRMK-CASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+..|++.+....-. ....+..+|+|+|.+|+||||+...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 14 GTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp ------------------CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ccccccccccccccCCCCcceEEEEEECcCCCCHHHHHHHHHc
Confidence 44455554443332 2234567999999999999999999974
No 358
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.77 E-value=0.00076 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++.+|.|+|+||+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999764
No 359
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.77 E-value=0.0011 Score=45.53 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=22.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|.+|+||||+...+...
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 345679999999999999999999854
No 360
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.77 E-value=0.00078 Score=55.24 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=27.6
Q ss_pred HHHHhhh-cCCCCeEEEEECCCCCChhhHHHHH
Q 032438 21 LLRRMKC-ASKPDKRLILVGPPGSGKGTQSPII 52 (141)
Q Consensus 21 ~~~~~~~-~~~~~~~I~i~G~pgsGKstla~~L 52 (141)
.+..+.. ..+++..+.|+|++||||||+++.+
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3667776 6778899999999999999999994
No 361
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.76 E-value=0.001 Score=46.09 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++..+|+|+|++|+||||+...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999999999753
No 362
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.76 E-value=0.0014 Score=46.49 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=26.8
Q ss_pred HHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 20 ~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.+++.++. ..+..+|+|+|++|+||||+.+.+..
T Consensus 14 ~~l~~~~~-~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGL-YKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTC-TTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhc-cCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 44555553 45567899999999999999999974
No 363
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.76 E-value=0.00097 Score=56.91 Aligned_cols=34 Identities=18% Similarity=0.496 Sum_probs=27.8
Q ss_pred EEEEECCCCCChhhHHHHHHhhh-----CccccchHHHH
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDML 67 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ll 67 (141)
.++|.||||+|||++|+.+++.+ .+..+++.++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 69999999999999999999875 25556666554
No 364
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.75 E-value=0.00092 Score=45.28 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCChhhHHHHHHh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+|+|+|++|+||||+...+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999974
No 365
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.75 E-value=0.0016 Score=50.04 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++..+.+.+.. .+ ++.+++.||||+||||+++.+++.
T Consensus 5 ~~~~L~~~i~~-~~-~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 5 QLETLKRIIEK-SE-GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHHHHT-CS-SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CC-CcEEEEECCCCCCHHHHHHHHHHh
Confidence 44444455543 33 779999999999999999999985
No 366
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.0017 Score=45.16 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++..+|+|+|.+|+||||+...+..
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 46678999999999999999999984
No 367
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.74 E-value=0.0011 Score=46.53 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|++|+||||+...+...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 44579999999999999999999753
No 368
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.74 E-value=0.0003 Score=55.30 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=26.7
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++....++..+.|+||+||||||+.+.|+-
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4455567888999999999999999999993
No 369
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.74 E-value=0.00065 Score=46.85 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.+..+|+|+|++|+||||+...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5778999999999999999999873
No 370
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.74 E-value=0.0011 Score=45.06 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.0
Q ss_pred eEEEEECCCCCChhhHHHHHHh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~ 54 (141)
.+|+|+|++|+||||+...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999963
No 371
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.74 E-value=0.00096 Score=53.56 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.+..+.|+|++||||||+.+.|+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 345999999999999999999985
No 372
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.0012 Score=46.30 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|.+|+||||+...+...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45689999999999999999999854
No 373
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.73 E-value=0.00091 Score=46.53 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+..+|+|+|.+|+||||+...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4579999999999999999999854
No 374
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.73 E-value=0.001 Score=46.51 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.2
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|++|+||||+...|...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 445679999999999999999999853
No 375
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.73 E-value=0.0014 Score=52.80 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.1
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.-.++..++|.|+||+||||++..++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4566789999999999999999998863
No 376
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.73 E-value=0.00099 Score=46.56 Aligned_cols=26 Identities=42% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++..+|+|+|.+|+||||+...+..
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHc
Confidence 34567999999999999999999985
No 377
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.72 E-value=0.0011 Score=45.72 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+..+|+|+|.+|+||||+...+..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999974
No 378
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.00099 Score=45.71 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|.+|+||||+...+...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 44679999999999999999999753
No 379
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.71 E-value=0.014 Score=51.33 Aligned_cols=105 Identities=10% Similarity=0.077 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh---------CccccchHH-----HHHHHHHccCcchHHHH
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY---------CLCHLATGD-----MLRAAVAAKTPLGIKAK 82 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~---------~~~~is~~~-----ll~~~~~~~~~~g~~i~ 82 (141)
..+++.+.+......+..|.|.|+.|+||||+|+.++... ++.++++.. ++... .....
T Consensus 132 ~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~ 204 (1249)
T 3sfz_A 132 LVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL-------QNLCM 204 (1249)
T ss_dssp HHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH-------HHHHH
Confidence 3445555554334566789999999999999999887652 122444322 11111 00111
Q ss_pred HHhhcC---C--cchHHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHhcc
Q 032438 83 EAMDKG---E--LVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKVS 129 (141)
Q Consensus 83 ~~l~~g---~--~ip~~~~~~ll~~~l~~~~~~~g~IldG~P~~~~q~~~l~ 129 (141)
.....+ . ....+.+.+.++..+......--+|||+. .+..+.+.+.
T Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~-~~~~~~~~~~ 255 (1249)
T 3sfz_A 205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV-WDPWVLKAFD 255 (1249)
T ss_dssp HHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESC-CCHHHHTTTC
T ss_pred HhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecC-CCHHHHHhhc
Confidence 111111 1 12234455666666655433457899997 4566666553
No 380
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.71 E-value=0.0012 Score=45.89 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+..+|+|+|.+|+||||+.+.+...+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 35699999999999999998887654
No 381
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.71 E-value=0.001 Score=46.29 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
....+|+|+|++|+||||+...|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 34579999999999999999999853
No 382
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.71 E-value=0.0011 Score=45.28 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+..+|+|+|.+|+||||+...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999999854
No 383
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.70 E-value=0.0011 Score=47.14 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=21.5
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+..+|+|+|.+|+||||+...+..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 45678999999999999999999885
No 384
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.70 E-value=0.002 Score=47.88 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=29.2
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 18 ~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..++.+++.....+..+|+|+|.+|+||||+...|...
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33444555544556789999999999999999999853
No 385
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.70 E-value=0.0014 Score=45.80 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.8
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+..+|+|+|.+|+||||+...|..
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 34567999999999999999999975
No 386
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.69 E-value=0.0013 Score=46.31 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|++|+||||+...+...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 455789999999999999999999753
No 387
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.68 E-value=0.0011 Score=48.45 Aligned_cols=26 Identities=31% Similarity=0.541 Sum_probs=22.0
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+..+|+|+|++|+||||+...|..
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcC
Confidence 34568999999999999999999985
No 388
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.68 E-value=0.0012 Score=46.00 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.+..+|+|+|.+|+||||+...+..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 4567999999999999999999974
No 389
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.68 E-value=0.0011 Score=45.91 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCChhhHHHHHHhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.++|+|+|++|+||||+...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999854
No 390
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.66 E-value=0.0011 Score=45.54 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.2
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|++|+||||+...+...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 34579999999999999999999753
No 391
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.66 E-value=0.0016 Score=47.83 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.....+++.|.+|+||||++..|+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999854
No 392
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.65 E-value=0.0015 Score=46.02 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+..+|+|+|++|+||||+...+..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999999999963
No 393
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.64 E-value=0.0011 Score=45.58 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|.+|+||||+...+...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45679999999999999999999863
No 394
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.64 E-value=0.0019 Score=46.47 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=24.5
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..++..++++|++||||||.+-.++.++
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4556899999999999999999998877
No 395
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.64 E-value=0.00089 Score=52.34 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
++..|+|.|+-||||||+++.|++.++
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999999875
No 396
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.64 E-value=0.0011 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.0
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..+.|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999543
No 397
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.63 E-value=0.0016 Score=45.62 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|.+|+||||+...+...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 344579999999999999999887753
No 398
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.62 E-value=0.00096 Score=45.56 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCChhhHHHHHHh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+|+|+|++|+||||+...+..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999974
No 399
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.62 E-value=0.0012 Score=46.54 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=22.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 345689999999999999999999864
No 400
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.62 E-value=0.0014 Score=45.85 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=22.0
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|.+|+||||+...+...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 344579999999999999999998753
No 401
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.62 E-value=0.0014 Score=46.57 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=21.2
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|++|+||||+...+...
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345679999999999999999999853
No 402
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.62 E-value=0.0016 Score=43.98 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.0
Q ss_pred EEEEECCCCCChhhHHHHHHhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~ 55 (141)
+|+|+|++|+||||+...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999753
No 403
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.61 E-value=0.0016 Score=49.71 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++.+|.++|++|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999654
No 404
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.61 E-value=0.0015 Score=53.75 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=22.1
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++.+|.|+|+|||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999644
No 405
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.61 E-value=0.0013 Score=45.98 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=21.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+..+|+|+|.+|+||||+...+..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34467999999999999999999874
No 406
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.60 E-value=0.0019 Score=51.88 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=31.8
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh----C--ccccchH
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY----C--LCHLATG 64 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~----~--~~~is~~ 64 (141)
..++..+ .+-.++..++|.|+||+|||+++..++... | +.++|+.
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3344333 346677899999999999999999988533 2 4555553
No 407
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.60 E-value=0.0026 Score=48.25 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=25.0
Q ss_pred eEEEEECCCCCChhhHHHHHHhhhC--ccccch
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEYC--LCHLAT 63 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~~--~~~is~ 63 (141)
..++|.|++|+|||++++.+++..+ ..+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 4899999999999999999998753 334443
No 408
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.60 E-value=0.0014 Score=45.77 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|++|+||||+...+...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 33569999999999999999999853
No 409
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.60 E-value=0.00093 Score=46.04 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCChhhHHHHHHh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+..+|+|+|.+|+||||+...+..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 457999999999999999999984
No 410
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.60 E-value=0.003 Score=51.87 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+.+.+.+......+..|+|.|++|+||||+|..++.
T Consensus 132 ~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 132 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp HHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 34444444443334567899999999999999998864
No 411
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.58 E-value=0.0011 Score=57.29 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=22.4
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..++|+||||+|||++|+.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 412
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.57 E-value=0.0014 Score=45.91 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.0
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|.+|+||||+...+...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 445679999999999999999999864
No 413
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.56 E-value=0.0015 Score=48.26 Aligned_cols=27 Identities=37% Similarity=0.619 Sum_probs=22.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+..+|+|+|.+|+||||+...|...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence 345689999999999999999999753
No 414
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.56 E-value=0.0013 Score=45.66 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|.+|+||||+...+...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 44679999999999999999999853
No 415
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.55 E-value=0.0014 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.5
Q ss_pred eEEEEECCCCCChhhHHHHHHhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+|+|+|++|+||||+...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 47999999999999999999853
No 416
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0014 Score=45.51 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+..+|+|+|++|+||||+...|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3579999999999999999999753
No 417
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.52 E-value=0.0016 Score=46.58 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=22.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+....+|+|+|++|+||||+...+...
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 455679999999999999999999864
No 418
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.52 E-value=0.0029 Score=49.05 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=26.9
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~ 64 (141)
.+..++|+|++|+||||++..|.++ |...++-|
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD 175 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD 175 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence 3678999999999999999999875 66555443
No 419
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.51 E-value=0.0015 Score=51.60 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=36.5
Q ss_pred HHHHHHHHhh-hcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHH
Q 032438 17 LMTELLRRMK-CASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGD 65 (141)
Q Consensus 17 ~~~~~~~~~~-~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ 65 (141)
.+..++.-+. ....++..++|.|+||+||||+|..++... .+.+++.+.
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4556666665 455677899999999999999999988643 466677654
No 420
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.0013 Score=46.80 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=24.7
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++.+......+|+|+|.+|+||||+...+...
T Consensus 17 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 17 NLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp --CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 33344455679999999999999999999853
No 421
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.50 E-value=0.0015 Score=49.82 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhCccccchHHHH
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~~~~is~~~ll 67 (141)
...+.|+|++||||||+.+.|+ |....+.+++.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~---g~~~~~~G~i~ 201 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAIN---PGLKLRVSEVS 201 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHS---TTCCCC-----
T ss_pred CCeEEEECCCCCcHHHHHHHhc---cccccccccee
Confidence 5689999999999999999998 55555555554
No 422
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.50 E-value=0.0021 Score=45.43 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.+..+|+|+|++|+||||+...|..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4467999999999999999999984
No 423
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.50 E-value=0.002 Score=50.27 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=33.2
Q ss_pred HHHHHHHhh----hcCCCCeEEEEECCCCCChhhHHHHHHhhh-----C--ccccchHHH
Q 032438 18 MTELLRRMK----CASKPDKRLILVGPPGSGKGTQSPIIKDEY-----C--LCHLATGDM 66 (141)
Q Consensus 18 ~~~~~~~~~----~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~--~~~is~~~l 66 (141)
+.+++.-+. ....++ ++.|.|+||+||||++-.++... | +.+++..+-
T Consensus 11 i~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 11 IPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp CHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 455555555 455666 89999999999999988876432 2 455665543
No 424
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.49 E-value=0.0022 Score=51.71 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++.+|+++|++|+||||++..||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999544
No 425
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.49 E-value=0.0014 Score=45.87 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|++|+||||+...+...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 34579999999999999999999753
No 426
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.49 E-value=0.0017 Score=48.49 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCChhhHHHHHHhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+|.|+|+||+||||+...|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999843
No 427
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.48 E-value=0.0016 Score=50.74 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.0
Q ss_pred CCCeEEEE--ECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLIL--VGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i--~G~pgsGKstla~~La~~~ 56 (141)
..+..++| .|+||+|||++++.+++.+
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 34568888 9999999999999998765
No 428
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.48 E-value=0.0021 Score=45.15 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=21.3
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+..+|+|+|.+|+||||+...+..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 45567999999999999999999974
No 429
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.48 E-value=0.0014 Score=53.66 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=29.0
Q ss_pred HHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 19 ~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+++.-+.....++..+.|.|+|||||||+++.++..
T Consensus 268 ~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 268 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3444434456678889999999999999999999854
No 430
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.47 E-value=0.0023 Score=46.26 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|.+|+||||+...|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34689999999999999999999753
No 431
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.002 Score=45.02 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+..+|+|+|.+|+||||+...+...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 4579999999999999999999854
No 432
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.47 E-value=0.0015 Score=46.13 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+..+|+|+|.+|+||||+...|..
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHh
Confidence 45578999999999999999999974
No 433
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.46 E-value=0.0019 Score=44.95 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCChhhHHHHHHhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+|+|+|++|+||||+...|...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 469999999999999999999753
No 434
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.45 E-value=0.0019 Score=47.75 Aligned_cols=26 Identities=38% Similarity=0.626 Sum_probs=21.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..++.+|+|+|.||+||||+...|..
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhC
Confidence 35578999999999999999999874
No 435
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.45 E-value=0.0017 Score=49.53 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.0
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.+...|.|+|+||+||||+...|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 4456899999999999999999984
No 436
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.44 E-value=0.0014 Score=45.61 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
++..+|+|+|++|+||||+...+..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 6788999999999999999999853
No 437
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.42 E-value=0.0023 Score=45.32 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=22.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|.+|+||||+...+...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 45679999999999999999999853
No 438
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.42 E-value=0.0016 Score=45.77 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
..+..+|+|+|.+|+|||++.+.+..++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3446799999999999999999887643
No 439
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.41 E-value=0.0016 Score=45.44 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=22.2
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.+..+|+|+|.+|+||||+...+....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 446799999999999999999997543
No 440
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.41 E-value=0.0016 Score=50.08 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCChhhHHHHHHhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~ 55 (141)
-+.++|+|+.||||||+.+.|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 468899999999999999999854
No 441
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.41 E-value=0.0033 Score=50.67 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=30.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..+ ....++.++.|+|++||||||+.+.|+..+
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 56666 677888999999999999999999999765
No 442
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.40 E-value=0.0023 Score=44.96 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
...+|+|+|++|+||||+...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3479999999999999999999753
No 443
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.40 E-value=0.0017 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCChhhHHHHHH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIK 53 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La 53 (141)
+..+|+|+|.+|+||||+...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999985
No 444
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.39 E-value=0.0021 Score=53.09 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..++.++.|+|+.||||||+.+.|+-
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46778999999999999999999994
No 445
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.38 E-value=0.0011 Score=55.09 Aligned_cols=34 Identities=35% Similarity=0.525 Sum_probs=27.7
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.++...+++..+.|+||+||||||+.+.|+.-+
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3344455678899999999999999999998654
No 446
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.002 Score=45.96 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.0
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.....+|+|+|.+|+||||+.+.+...
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhC
Confidence 345679999999999999999998753
No 447
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.38 E-value=0.0028 Score=44.10 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.1
Q ss_pred eEEEEECCCCCChhhHHHHHHhhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~~ 56 (141)
-..+|+|+.||||||+.+.|.--+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999998544
No 448
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.38 E-value=0.0023 Score=50.48 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~ 54 (141)
++..+.|+|++|+||||+.+.|+.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCEEEEECCCCccHHHHHHHHhc
Confidence 356899999999999999999984
No 449
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.36 E-value=0.003 Score=49.41 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.|..++..+. .-.++..++|.|+||+||||++..++..
T Consensus 32 G~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 32 GFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp SCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4555555443 5677889999999999999999999865
No 450
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.36 E-value=0.0051 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=21.2
Q ss_pred EEEEECCCCCChhhHHHHHHhhh
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++|.|+||+||||++..+++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998765
No 451
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.35 E-value=0.0014 Score=54.76 Aligned_cols=35 Identities=37% Similarity=0.642 Sum_probs=28.7
Q ss_pred HHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 22 ~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++.++...+++..+.|+||+||||||+.+.|+.-+
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34445556778999999999999999999998654
No 452
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.34 E-value=0.0021 Score=45.09 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCChhhHHHHHHh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+|+|+|.+|+||||+...|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999874
No 453
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.33 E-value=0.0059 Score=48.87 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=32.4
Q ss_pred CCchhHHHHHHHHhhhc---------CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 12 VPSVDLMTELLRRMKCA---------SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 12 ~~~~~~~~~~~~~~~~~---------~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+.++++.+.+.+... ...+.+|.|+|+||+||||+.+.|...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 34567777776665421 123579999999999999999999854
No 454
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.33 E-value=0.00086 Score=56.06 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.7
Q ss_pred EEEEECCCCCChhhHHHHHHhhhCc
Q 032438 34 RLILVGPPGSGKGTQSPIIKDEYCL 58 (141)
Q Consensus 34 ~I~i~G~pgsGKstla~~La~~~~~ 58 (141)
.++|.||||+|||++|+.+++..+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCC
Confidence 7999999999999999999987653
No 455
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.32 E-value=0.0025 Score=44.93 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCChhhHHHHHHh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~ 54 (141)
...+|+|+|++|+||||+...|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999975
No 456
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.31 E-value=0.0013 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=11.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
....+|+|+|++|+||||+...+..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp SEEEEEEEECCCCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999998874
No 457
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.30 E-value=0.003 Score=50.84 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++.+|.++|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999655
No 458
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.30 E-value=0.004 Score=46.14 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=25.5
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhh---C--ccccchH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATG 64 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~---~--~~~is~~ 64 (141)
...+|++.|+||+||||++-.++..+ | +..++++
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 34689999999999999988888543 3 4444554
No 459
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.29 E-value=0.002 Score=49.91 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.4
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhCccccchH
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~~~~is~~ 64 (141)
.+.-++|+|++|+||||+|..|.++ |...++-|
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~-G~~lv~DD 178 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK-NHLFVGDD 178 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCEEEeCC
Confidence 3678999999999999999999764 65555544
No 460
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.28 E-value=0.003 Score=44.47 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+..+|+|+|.||+||||+..++...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999853
No 461
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.28 E-value=0.0034 Score=50.67 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=29.1
Q ss_pred cCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchH
Q 032438 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (141)
Q Consensus 28 ~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~ 64 (141)
+-.++..++|.|+||+||||++..++... .+.++|++
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 45667899999999999999999998644 35556554
No 462
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.27 E-value=0.003 Score=48.32 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...+.|+|++||||||+.+.|+ ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 5689999999999999999998 54
No 463
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.26 E-value=0.002 Score=48.76 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+.++|+|+|.|++||||+...|...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45679999999999999999999743
No 464
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.25 E-value=0.0019 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
++..|+|.|+-||||||+++.|++.+.
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456799999999999999999998764
No 465
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.24 E-value=0.0028 Score=52.78 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
...++|+|+||+||||++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988654
No 466
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.24 E-value=0.0014 Score=54.61 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=27.6
Q ss_pred HHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 23 ~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+.++...+++..+.|+||+||||||+.+.|+.-+
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3344455678899999999999999999998654
No 467
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.21 E-value=0.018 Score=51.51 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+..+++.+.+.. ..+...|.|.|+.|+||||+|+.++.
T Consensus 135 ~eLeeL~elL~~-~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 135 QPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp HHHHHHHHHHHH-CCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 445555555543 23467999999999999999998874
No 468
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.21 E-value=0.0033 Score=49.20 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 21 ~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
++..+ ....++.++.|+|++|+||||+.+.|+...
T Consensus 61 ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 61 AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45555 567788999999999999999999999765
No 469
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.21 E-value=0.0028 Score=44.76 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
...+|+|+|.+|+||||+...+...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4569999999999999999999853
No 470
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.20 E-value=0.0018 Score=50.60 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCChhhHHHHHHhhhC
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDEYC 57 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~~~ 57 (141)
...|+|.|+-||||||+++.|++.++
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999998764
No 471
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0027 Score=53.33 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=23.7
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..++.++.|+||.||||||+.+.|+-.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 356789999999999999999999943
No 472
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.19 E-value=0.0035 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.1
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
....+|+|+|.+|+||||+...|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 4457999999999999999999984
No 473
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.19 E-value=0.0068 Score=45.30 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=28.4
Q ss_pred hHHHHHHHHhhh----cCCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 16 DLMTELLRRMKC----ASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 16 ~~~~~~~~~~~~----~~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
++++.+...+.. .....++|+|+|.|++||||+...|...
T Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 6 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 344555444432 1234679999999999999999999854
No 474
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.18 E-value=0.0029 Score=44.79 Aligned_cols=26 Identities=27% Similarity=0.242 Sum_probs=22.3
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
....+|+|+|.+|+||||+...+...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 34579999999999999999999743
No 475
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.15 E-value=0.0032 Score=52.05 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=23.4
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+++.++.|+||.||||||+.+.|+-.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 345689999999999999999999843
No 476
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.15 E-value=0.0065 Score=49.90 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhc-CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 17 LMTELLRRMKCA-SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 17 ~~~~~~~~~~~~-~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+++.+.+... ......|.|.|++|+||||+|+.++.
T Consensus 136 ~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 136 HVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp HHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 344444444432 33467999999999999999999995
No 477
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.15 E-value=0.0042 Score=44.50 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=21.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+..+|+|+|.+|+||||+...+...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 34579999999999999999999753
No 478
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.14 E-value=0.0028 Score=53.09 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCCChhhHHHHHHh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.-+.|.|+|++||||||+.+.|+.
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHS
T ss_pred cCCeEEEECCCCChHHHHHHHHhC
Confidence 344699999999999999999984
No 479
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.13 E-value=0.003 Score=47.10 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCChhhHHHHHHh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~ 54 (141)
+..+|+|+|.||+||||+...|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 456899999999999999999985
No 480
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0037 Score=44.90 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
....+|+|+|++|+||||+...|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 34579999999999999999999853
No 481
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.10 E-value=0.0039 Score=43.45 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCChhhHHHHHHhh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~~ 55 (141)
..+|+|+|++|+||||+...+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999854
No 482
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.09 E-value=0.0011 Score=55.04 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=27.1
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++...+++..+.|+||+||||||+.+.|+..+
T Consensus 359 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 344445778899999999999999999998654
No 483
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.07 E-value=0.0019 Score=46.10 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=22.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
.+.++|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34679999999999999999999764
No 484
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.05 E-value=0.0033 Score=51.45 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=24.6
Q ss_pred hhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 26 ~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
+....+ ..+.|+||+||||||+.+.|+--+
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 334555 899999999999999999998543
No 485
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.04 E-value=0.0059 Score=46.06 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=24.9
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
++....+...+|+|+|.+|+||||+...+..
T Consensus 147 ~~~~~~~~~~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 147 NIDEAAKELIKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp HHHHHHTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cchhcccceeEEEEECCCCCChHHHHHHHHh
Confidence 3333345678999999999999999998875
No 486
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.04 E-value=0.0046 Score=44.74 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.8
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.+..+|+|+|.||+||||+..++..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999974
No 487
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.03 E-value=0.0014 Score=54.50 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=27.2
Q ss_pred HhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh
Q 032438 24 RMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (141)
Q Consensus 24 ~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~ 56 (141)
.++...+++..+.|+||+||||||+.+.|+.-+
T Consensus 361 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 361 GVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344455678899999999999999999998654
No 488
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.98 E-value=0.0038 Score=52.36 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.6
Q ss_pred CCCCeEEEEECCCCCChhhHHHHHHh
Q 032438 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 29 ~~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
..++.++.|+|+.||||||+.+.|+-
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhC
Confidence 46778999999999999999999984
No 489
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.97 E-value=0.0042 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.5
Q ss_pred eEEEEECCCCCChhhHHHHHHhh
Q 032438 33 KRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 33 ~~I~i~G~pgsGKstla~~La~~ 55 (141)
++|+|+|.||+||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999754
No 490
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.97 E-value=0.0011 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHH
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIK 53 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La 53 (141)
.++..+.|+|+||+||||+.+.|+
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHhc
Confidence 346799999999999999999997
No 491
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.96 E-value=0.0033 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.7
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++.++.|+||.||||||+.+.|+.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999985
No 492
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.96 E-value=0.0041 Score=51.34 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++.++.|+|+.||||||+.+.|+-
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999985
No 493
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.95 E-value=0.0039 Score=47.62 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.4
Q ss_pred CeEEEEECCCCCChhhHHHHHHh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~ 54 (141)
...|.|+|++|+||||+.+.|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 46889999999999999999863
No 494
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.92 E-value=0.0052 Score=46.88 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
+..+|+|+|.||+|||++...+...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999998754
No 495
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.92 E-value=0.005 Score=51.65 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.9
Q ss_pred CCCeEEEEECCCCCChhhHHHHHHh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~La~ 54 (141)
.++.++.|+||.||||||+.+.|+-
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999995
No 496
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.90 E-value=0.0056 Score=46.13 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCChhhHHHHHHh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~ 54 (141)
..+|+|+|.||+||||+...|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46899999999999999999985
No 497
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.90 E-value=0.0041 Score=44.44 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=21.4
Q ss_pred CCCeEEEEECCCCCChhhHHHH-HHhh
Q 032438 30 KPDKRLILVGPPGSGKGTQSPI-IKDE 55 (141)
Q Consensus 30 ~~~~~I~i~G~pgsGKstla~~-La~~ 55 (141)
.+..+|+|+|.+|+||||+... +...
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4457999999999999999998 4433
No 498
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.89 E-value=0.0057 Score=48.02 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCChhhHHHHHHhh
Q 032438 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (141)
Q Consensus 31 ~~~~I~i~G~pgsGKstla~~La~~ 55 (141)
....++|+|++||||||+++.+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998854
No 499
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=95.89 E-value=0.0034 Score=47.37 Aligned_cols=49 Identities=16% Similarity=-0.025 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCChhhHHHHHHhhh-----CccccchHH
Q 032438 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGD 65 (141)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~I~i~G~pgsGKstla~~La~~~-----~~~~is~~~ 65 (141)
.+..++.-+.....++..++|.|.||+||+|++..++..- .+.+++.++
T Consensus 6 Gi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e 59 (260)
T 3bs4_A 6 EIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY 59 (260)
T ss_dssp SSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC
Confidence 3566777777778888999999999999999988776432 245555543
No 500
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.87 E-value=0.0072 Score=41.39 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCChhhHHHHHHh
Q 032438 32 DKRLILVGPPGSGKGTQSPIIKD 54 (141)
Q Consensus 32 ~~~I~i~G~pgsGKstla~~La~ 54 (141)
+...+|+||.||||||+...|.-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 55789999999999999998874
Done!