BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032439
MKMALNCSSSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVAR
RKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLL
VRVEEQPNGCCIKLLSCKLL

High Scoring Gene Products

Symbol, full name Information P value
AT5G04440 protein from Arabidopsis thaliana 5.2e-42
AT4G31115 protein from Arabidopsis thaliana 2.2e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032439
        (140 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2184377 - symbol:AT5G04440 "AT5G04440" species...   445  5.2e-42   1
TAIR|locus:1005716370 - symbol:AT4G31115 species:3702 "Ar...   132  2.2e-08   1


>TAIR|locus:2184377 [details] [associations]
            symbol:AT5G04440 "AT5G04440" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009507 InterPro:IPR018971
            Pfam:PF09366 EMBL:BT022095 EMBL:BT024482 IPI:IPI00525146
            RefSeq:NP_196064.2 UniGene:At.33125 ProteinModelPortal:Q500X2
            STRING:Q500X2 PaxDb:Q500X2 PRIDE:Q500X2 EnsemblPlants:AT5G04440.1
            GeneID:830323 KEGG:ath:AT5G04440 TAIR:At5g04440 eggNOG:NOG284302
            InParanoid:Q500X2 OMA:VYRFRFF PhylomeDB:Q500X2
            ProtClustDB:CLSN2690780 Genevestigator:Q500X2 Uniprot:Q500X2
        Length = 255

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 85/98 (86%), Positives = 93/98 (94%)

Query:    42 SPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTF 101
             SP RVS++++P KARF+AR+K+SV VRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTF
Sbjct:    55 SPIRVSSSSTP-KARFIARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTF 113

Query:   102 RCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL 139
             RCYVY FKFF FE+CPVLLVRVEEQPNGCCIKLLSCKL
Sbjct:   114 RCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKL 151


>TAIR|locus:1005716370 [details] [associations]
            symbol:AT4G31115 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] EMBL:CP002687 EMBL:AL161578
            UniGene:At.31771 UniGene:At.44014 IPI:IPI00891853
            RefSeq:NP_001119084.1 PRIDE:B3H5W4 EnsemblPlants:AT4G31115.2
            GeneID:829239 KEGG:ath:AT4G31115 TAIR:At4g31115 eggNOG:NOG294453
            HOGENOM:HOG000064647 OMA:PGNLVMQ PhylomeDB:B3H5W4
            ProtClustDB:CLSN2680195 Genevestigator:B3H5W4 InterPro:IPR018971
            Pfam:PF09366 Uniprot:B3H5W4
        Length = 274

 Score = 132 (51.5 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 31/103 (30%), Positives = 58/103 (56%)

Query:    45 RVSAATSPAKARFVARRKESVRVR---QLQRPLIEYMSLPASQYSVLDAERIER---VDD 98
             R    +S  KA   A RK+ +++    + +    E++  P+   +V++A+ ++    VDD
Sbjct:    72 RAMVISSLKKANISASRKQRIKLEINGEKELTFSEFLKHPSGMEAVINAKALQSYHLVDD 131

Query:    99 N--TFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL 139
             +  T+RC + + +  +FE+ PVL++RV      C ++LLSCKL
Sbjct:   132 SDDTYRCTLPKVQLMSFEVYPVLVLRVTPTQEDCTVELLSCKL 174


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.138   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       130   0.00091  102 3  11 22  0.42    30
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  126 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.20u 0.13s 12.33t   Elapsed:  00:00:00
  Total cpu time:  12.20u 0.13s 12.33t   Elapsed:  00:00:00
  Start:  Sat May 11 05:16:43 2013   End:  Sat May 11 05:16:43 2013

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