BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032439
         (140 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2O7I|A Chain A, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
           Binding Protein Bound With Cellobiose
 pdb|3I5O|A Chain A, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
           Binding Protein Bound With Cellopentaose
 pdb|3I5O|B Chain B, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
           Binding Protein Bound With Cellopentaose
          Length = 592

 Score = 31.2 bits (69), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 7/37 (18%)

Query: 76  EYMSLPASQYSV-------LDAERIERVDDNTFRCYV 105
           ++M LPA QY +       + AER E VDD T R Y+
Sbjct: 37  QFMYLPAFQYDLGRDAWIPVIAERYEFVDDKTLRIYI 73


>pdb|2CRJ|A Chain A, Solution Structure Of The Hmg Domain Of Mouse Hmg Domain
           Protein Hmgx2
          Length = 92

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 56  RFVARRKESVRVRQLQRPLIEYMSLPASQYSVLD-AERIERVDDNTFRCYVYRFKFFAFE 114
           RF+  R+E +R R    P  E   +  +++S L  AE+   +D+       Y  + +A++
Sbjct: 17  RFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQ 76

Query: 115 ICPVLLVRVEEQPN 128
                 V  E  P+
Sbjct: 77  QSEAYKVCTESGPS 90


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,279,903
Number of Sequences: 62578
Number of extensions: 101869
Number of successful extensions: 193
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 4
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)