BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032439
         (140 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0CO18|SWR1_CRYNJ Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
           (strain JEC21 / ATCC MYA-565) GN=SWR1 PE=3 SV=1
          Length = 1246

 Score = 32.7 bits (73), Expect = 0.65,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 18  NKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESV----RVRQLQRP 73
           N++  P N  S T N G F L + S   VS A+ PA    + R+        R R+++  
Sbjct: 66  NRLEEPHNPVSSTANIGNFALLESSSAEVSDASCPATMPILVRQSPKTCSQPRTRKVKLS 125

Query: 74  LIEYMSLPASQYSVLDAERIERVDDN 99
            +   S P    +  D E   R++D+
Sbjct: 126 TLSLSSDPDPDIN--DPEFKARLEDS 149


>sp|P0CO19|SWR1_CRYNB Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
           (strain B-3501A) GN=SWR1 PE=3 SV=1
          Length = 1246

 Score = 32.7 bits (73), Expect = 0.65,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 18  NKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESV----RVRQLQRP 73
           N++  P N  S T N G F L + S   VS A+ PA    + R+        R R+++  
Sbjct: 66  NRLEEPHNPVSSTANIGNFALLESSSAEVSDASCPATMPILVRQSPKTCSQPRTRKVKLS 125

Query: 74  LIEYMSLPASQYSVLDAERIERVDDN 99
            +   S P    +  D E   R++D+
Sbjct: 126 TLSLSSDPDPDIN--DPEFKARLEDS 149


>sp|Q6LZS1|OTC_METMP Ornithine carbamoyltransferase OS=Methanococcus maripaludis (strain
           S2 / LL) GN=argF PE=3 SV=1
          Length = 304

 Score = 32.7 bits (73), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 8   SSSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRV 67
           S ST    S++   N     SL +N G  HL +K      A T+   +RFV      V+ 
Sbjct: 45  SPSTRTRMSFDLAVNELGGHSLMMNEGEIHLGKKESI---ADTARVMSRFVDAIVARVKN 101

Query: 68  RQLQRPLIEYMSLP 81
            +    L EY S+P
Sbjct: 102 HKTLEDLAEYGSVP 115


>sp|A7ICB3|RLMN_XANP2 Dual-specificity RNA methyltransferase RlmN OS=Xanthobacter
           autotrophicus (strain ATCC BAA-1158 / Py2) GN=rlmN PE=3
           SV=1
          Length = 414

 Score = 30.8 bits (68), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 51  SPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRC 103
           SPA AR + +  E V  +     LI +   P +QY   D E IER  D  FR 
Sbjct: 321 SPADARALVKLLEGVPAKI---NLIPFNPWPGTQYECSDWETIERFSDIVFRA 370


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.135    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,540,681
Number of Sequences: 539616
Number of extensions: 1565183
Number of successful extensions: 4388
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4386
Number of HSP's gapped (non-prelim): 6
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)