Query 032439
Match_columns 140
No_of_seqs 80 out of 82
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 23:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ejx_A ST0812; arcaea, unknown 45.6 21 0.00073 27.0 3.8 57 64-121 8-68 (139)
2 2or7_A T-cell immunoglobulin a 37.2 18 0.00062 23.4 2.0 35 88-125 76-110 (115)
3 4gos_A V-SET domain-containing 36.2 33 0.0011 23.1 3.3 34 88-124 86-119 (125)
4 1qfo_A Protein (sialoadhesin); 35.7 20 0.00069 23.2 2.1 38 88-125 81-118 (119)
5 3udw_C Poliovirus receptor; PV 33.9 42 0.0014 20.8 3.3 36 88-125 81-116 (118)
6 1dr9_A B7-1 (CD80), T lymphocy 27.5 1.1E+02 0.0039 20.7 5.0 17 91-107 70-86 (201)
7 2or8_A Hepatitis A virus cellu 27.0 47 0.0016 20.9 2.7 20 88-107 75-94 (116)
8 1xn5_A BH1534 unknown conserve 26.3 1.5E+02 0.0053 20.0 6.3 18 118-135 79-96 (146)
9 1nko_A Sialic acid binding IG- 25.9 52 0.0018 21.6 2.9 36 91-127 93-129 (132)
10 2nn5_A Hypothetical protein EF 23.6 1.9E+02 0.0066 21.0 5.9 39 97-135 75-127 (184)
11 1zox_A CLM-1; IG-superfamily, 21.5 69 0.0024 20.3 2.7 21 88-108 76-96 (113)
12 1neu_A Myelin P0 protein; stru 21.0 71 0.0024 20.2 2.7 37 90-127 85-121 (124)
No 1
>2ejx_A ST0812; arcaea, unknown function, NPPSFA; 1.79A {Sulfolobus tokodaii str}
Probab=45.60 E-value=21 Score=26.98 Aligned_cols=57 Identities=11% Similarity=0.185 Sum_probs=44.1
Q ss_pred Eeeeecc--CcchhhhhcCcc-eeeeecCccceeE-ecCCeEEEEeeeeeEEEEEEceEEEE
Q 032439 64 SVRVRQL--QRPLIEYMSLPA-SQYSVLDAERIER-VDDNTFRCYVYRFKFFAFEICPVLLV 121 (140)
Q Consensus 64 ~i~V~e~--~~~L~eYLrqPa-~vyALLDp~~ler-Lgd~tFR~~v~~L~ff~leV~PVVdL 121 (140)
++.++.. ...|.+-|++|. ....||-+....- .++|.|+++. .+-.+.++++-.|-+
T Consensus 8 ~~~i~t~hd~~~v~~ILSDP~F~lp~llp~~k~~~~~~~~~F~~~g-~f~~~~~~~~G~vy~ 68 (139)
T 2ejx_A 8 EKEIKTNQDIDVVMTIFSDPAFTIPQIFPGIASIKCIEPEIFEAEG-KFLAFSYKVKGRVYK 68 (139)
T ss_dssp EEEEECSSCHHHHHHHHTCHHHHHHHHSTTEEEEECCSTTEEEEEE-EETTEEEEEEEEEEE
T ss_pred EEEeccCCChhheEEEecCCceEehhhCCcEEEEEecCCCeEEEEE-EEeeEEEEEEEEEEE
Confidence 3444443 457899999999 7999999988777 8999999998 566677777766543
No 2
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}
Probab=37.24 E-value=18 Score=23.38 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=22.7
Q ss_pred cCccceeEecCCeEEEEeeeeeEEEEEEceEEEEEEEE
Q 032439 88 LDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEE 125 (140)
Q Consensus 88 LDp~~lerLgd~tFR~~v~~L~ff~leV~PVVdLrV~~ 125 (140)
|--..++.-|.|+|+|.+..-..++ .-.+.|.|.+
T Consensus 76 L~I~~v~~~DsG~Y~C~v~~~~~~~---~~~v~L~V~~ 110 (115)
T 2or7_A 76 LTIENTVVGDGGPYCCVVEIPGAFH---FVDYMLEVKP 110 (115)
T ss_dssp EEESSCCGGGCEEEEEEECCTTSCE---EEEEEEEEES
T ss_pred EEEccCCHHHCEEEEEEEECCCcee---EEEEEEEEcC
Confidence 4445566679999999998654333 4455566644
No 3
>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}
Probab=36.22 E-value=33 Score=23.06 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=23.3
Q ss_pred cCccceeEecCCeEEEEeeeeeEEEEEEceEEEEEEE
Q 032439 88 LDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVE 124 (140)
Q Consensus 88 LDp~~lerLgd~tFR~~v~~L~ff~leV~PVVdLrV~ 124 (140)
|--+.++.-|.|+|+|.+..-.. .-+-.+.|+|-
T Consensus 86 L~I~~v~~~D~G~Y~C~v~~~~g---~~~~~v~LkVG 119 (125)
T 4gos_A 86 LRLKNVQLTDAGTYKCYIITSKG---KGNANLEYKTG 119 (125)
T ss_dssp EEESSCCGGGCEEEEEEEEETTE---EEEEEEEEEEE
T ss_pred EEECCCChHHCEEEEEEEEeCCC---eEEEEEEEEEC
Confidence 33455666799999999875433 34677788774
No 4
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*
Probab=35.70 E-value=20 Score=23.20 Aligned_cols=38 Identities=13% Similarity=-0.042 Sum_probs=23.2
Q ss_pred cCccceeEecCCeEEEEeeeeeEEEEEEceEEEEEEEE
Q 032439 88 LDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEE 125 (140)
Q Consensus 88 LDp~~lerLgd~tFR~~v~~L~ff~leV~PVVdLrV~~ 125 (140)
|--..++.-|.|+|.|.+..-.-..+...+-+.|.|.+
T Consensus 81 L~I~~v~~~Dsg~Y~C~v~~~~~~~~~~~~~~~L~V~~ 118 (119)
T 1qfo_A 81 LLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVTT 118 (119)
T ss_dssp EEECSCCGGGCEEEEEEEECC-CCEEECSSCEEEEEEC
T ss_pred EEEccCCcccCceEEEEEEeCCCceecccCCeEEEEec
Confidence 33355666799999999875421123334667777754
No 5
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}
Probab=33.95 E-value=42 Score=20.81 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=22.1
Q ss_pred cCccceeEecCCeEEEEeeeeeEEEEEEceEEEEEEEE
Q 032439 88 LDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEE 125 (140)
Q Consensus 88 LDp~~lerLgd~tFR~~v~~L~ff~leV~PVVdLrV~~ 125 (140)
|--..++.-|.|+|+|.+...... ...-.+.|.|..
T Consensus 81 L~I~~v~~~D~G~Y~C~v~~~~~~--~~~~~~~L~V~~ 116 (118)
T 3udw_C 81 LRMFGLRVEDEGNYTCLFVTFPQG--SRSVDIWLRVLA 116 (118)
T ss_dssp EEECSCCGGGCEEEEEEEEEETTE--EEEEEEEEEEEC
T ss_pred EEEeecChHHCeEEEEEEEECCCC--CccceEEEEEEe
Confidence 333556667999999998753221 344555666654
No 6
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=27.46 E-value=1.1e+02 Score=20.68 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=13.2
Q ss_pred cceeEecCCeEEEEeee
Q 032439 91 ERIERVDDNTFRCYVYR 107 (140)
Q Consensus 91 ~~lerLgd~tFR~~v~~ 107 (140)
..++.-|.|.|+|.+..
T Consensus 70 ~~v~~~D~G~Y~C~~~~ 86 (201)
T 1dr9_A 70 LALRPSDEGTYECVVLK 86 (201)
T ss_dssp CSCCGGGCEEEEEEEEE
T ss_pred ecccchhCeEEEEEEEc
Confidence 44556689999999875
No 7
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}
Probab=26.95 E-value=47 Score=20.94 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=15.3
Q ss_pred cCccceeEecCCeEEEEeee
Q 032439 88 LDAERIERVDDNTFRCYVYR 107 (140)
Q Consensus 88 LDp~~lerLgd~tFR~~v~~ 107 (140)
|--+.++.-|.|+|.|.+..
T Consensus 75 L~I~~v~~~DsG~Y~C~v~~ 94 (116)
T 2or8_A 75 LTIENSVESDSGLYCCRVEI 94 (116)
T ss_dssp EEESSCCGGGCEEEEEEECC
T ss_pred EEECCCCcccCEEEEEEEEc
Confidence 44456666799999999875
No 8
>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5
Probab=26.35 E-value=1.5e+02 Score=20.04 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=12.9
Q ss_pred EEEEEEEEcCCceEEEEe
Q 032439 118 VLLVRVEEQPNGCCIKLL 135 (140)
Q Consensus 118 VVdLrV~~~~~~c~v~~l 135 (140)
.+.+.+.+.++++.+.+.
T Consensus 79 ~~~~~l~~~~~gT~l~~~ 96 (146)
T 1xn5_A 79 SVTFHLKEEENGTIFTIV 96 (146)
T ss_dssp EEEEEEEECSSSEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEE
Confidence 466777777787777665
No 9
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Probab=25.95 E-value=52 Score=21.64 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=23.5
Q ss_pred cceeEecCCeEEEEeeeeeEEEEEE-ceEEEEEEEEcC
Q 032439 91 ERIERVDDNTFRCYVYRFKFFAFEI-CPVLLVRVEEQP 127 (140)
Q Consensus 91 ~~lerLgd~tFR~~v~~L~ff~leV-~PVVdLrV~~~~ 127 (140)
+.++.-|.|+|.|.+..-. ..+.. .+.+.|.|.+-+
T Consensus 93 ~~v~~~DsG~Y~C~v~~~~-~~~~~~~~~~~l~V~~~~ 129 (132)
T 1nko_A 93 RDARMSDAGRYFFRMEKGN-IKWNYKYDQLSVNVTALT 129 (132)
T ss_dssp CSCCGGGCEEEEEEEEETT-EEEECTTSCEEEEEECCC
T ss_pred cccCcccCeeEEEEEEcCC-CcccccCCceEEEecccC
Confidence 4455668999999987543 23333 567777776543
No 10
>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5
Probab=23.61 E-value=1.9e+02 Score=21.02 Aligned_cols=39 Identities=8% Similarity=0.114 Sum_probs=24.4
Q ss_pred cCCeEEEEeee--eeEEEEEEce-----------EEEEEEEE-cCCceEEEEe
Q 032439 97 DDNTFRCYVYR--FKFFAFEICP-----------VLLVRVEE-QPNGCCIKLL 135 (140)
Q Consensus 97 gd~tFR~~v~~--L~ff~leV~P-----------VVdLrV~~-~~~~c~v~~l 135 (140)
.+|.|++.+.. ...--.++.| ++.+.+.+ .++++.+.+.
T Consensus 75 ~Gg~~~~~~~~~~~~~~v~e~~p~~rl~~~~~~~~v~~~l~~~~~~gT~l~~~ 127 (184)
T 2nn5_A 75 VNGFWRFILPDFEETMPFTDYAEEKYLGVTWDTGIIYFDLKEQAPHQTLLVFS 127 (184)
T ss_dssp TTCEEEEEETTEEEEEEEEEEETTTEEEEEETTEEEEEEEEEEETTEEEEEEE
T ss_pred CCCEEEEEEeCCCceEEEEEecCCCEEEEEEcCeEEEEEEEECCCCCEEEEEE
Confidence 56788887752 2222234444 56777777 7788877766
No 11
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}
Probab=21.47 E-value=69 Score=20.32 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=15.0
Q ss_pred cCccceeEecCCeEEEEeeee
Q 032439 88 LDAERIERVDDNTFRCYVYRF 108 (140)
Q Consensus 88 LDp~~lerLgd~tFR~~v~~L 108 (140)
|--+.++.-|.|+|.|.+..-
T Consensus 76 L~I~~~~~~DsG~Y~C~v~~~ 96 (113)
T 1zox_A 76 VTMEDLRMSDAGIYWCGITKG 96 (113)
T ss_dssp EEECSCCGGGCEEEEEEECCS
T ss_pred EEEccCCHHHCEEEEEeeEcC
Confidence 334556667999999998754
No 12
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Probab=20.95 E-value=71 Score=20.17 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=19.8
Q ss_pred ccceeEecCCeEEEEeeeeeEEEEEEceEEEEEEEEcC
Q 032439 90 AERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQP 127 (140)
Q Consensus 90 p~~lerLgd~tFR~~v~~L~ff~leV~PVVdLrV~~~~ 127 (140)
-+.++.-|.|+|.|.+....-.. ...-.+.|.|...+
T Consensus 85 I~~v~~~D~G~Y~C~v~~~~~~~-~~~~~v~L~V~~~p 121 (124)
T 1neu_A 85 IHNLDYSDNGTFTCDVKNPPDIV-GKTSQVTLYVFEKV 121 (124)
T ss_dssp ECSCCGGGCEEEEEEEEC----C-CEEEEEEEEEEC--
T ss_pred EccCChhhCEEEEEEEEcCCCCc-CcEeeEEEEEecCC
Confidence 34556669999999987543211 12335566665543
Done!