Query 032440
Match_columns 140
No_of_seqs 139 out of 1279
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 14:07:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.5 1.8E-13 3.9E-18 117.8 10.3 100 28-137 27-128 (968)
2 PLN03150 hypothetical protein; 99.2 8.8E-11 1.9E-15 97.6 8.6 101 26-136 368-499 (623)
3 PF08263 LRRNT_2: Leucine rich 98.8 1.1E-08 2.4E-13 56.1 3.8 38 29-69 2-43 (43)
4 PF13855 LRR_8: Leucine rich r 98.4 2.5E-07 5.5E-12 54.1 3.2 58 74-137 2-59 (61)
5 PLN03150 hypothetical protein; 98.2 2E-06 4.4E-11 71.8 4.1 56 75-136 468-524 (623)
6 PF12799 LRR_4: Leucine Rich r 97.9 8.2E-06 1.8E-10 44.8 2.6 32 103-136 2-33 (44)
7 PLN00113 leucine-rich repeat r 97.6 7.3E-05 1.6E-09 65.0 3.8 39 97-136 542-580 (968)
8 PF00560 LRR_1: Leucine Rich R 97.4 5.3E-05 1.1E-09 35.3 0.8 22 103-126 1-22 (22)
9 PF12799 LRR_4: Leucine Rich r 97.0 0.00061 1.3E-08 37.3 2.4 40 74-120 2-41 (44)
10 PF13855 LRR_8: Leucine rich r 96.6 0.0016 3.5E-08 37.7 1.9 35 102-137 1-35 (61)
11 KOG4579 Leucine-rich repeat (L 96.4 0.00077 1.7E-08 46.4 -0.2 58 73-137 53-110 (177)
12 KOG4237 Extracellular matrix p 96.2 0.0037 8E-08 49.7 2.5 53 74-132 68-120 (498)
13 KOG0617 Ras suppressor protein 96.2 0.00079 1.7E-08 48.2 -1.2 55 74-136 34-88 (264)
14 KOG0472 Leucine-rich repeat pr 95.7 0.0061 1.3E-07 48.7 2.0 43 93-137 496-538 (565)
15 PF14580 LRR_9: Leucine-rich r 95.5 0.011 2.3E-07 42.0 2.5 17 99-115 61-77 (175)
16 KOG4194 Membrane glycoprotein 94.9 0.022 4.7E-07 47.7 2.8 59 73-137 173-231 (873)
17 PF14580 LRR_9: Leucine-rich r 94.9 0.021 4.4E-07 40.6 2.2 59 74-137 65-123 (175)
18 KOG0472 Leucine-rich repeat pr 94.7 0.014 3E-07 46.7 1.0 55 73-136 252-306 (565)
19 KOG4194 Membrane glycoprotein 94.5 0.019 4.1E-07 48.1 1.5 39 98-137 289-327 (873)
20 KOG4658 Apoptotic ATPase [Sign 94.0 0.026 5.6E-07 49.4 1.5 40 95-135 564-603 (889)
21 PF13504 LRR_7: Leucine rich r 93.6 0.049 1.1E-06 23.5 1.3 14 102-115 1-14 (17)
22 PRK15387 E3 ubiquitin-protein 93.3 0.056 1.2E-06 46.7 2.2 33 103-137 423-455 (788)
23 PLN03210 Resistant to P. syrin 93.2 0.12 2.5E-06 46.6 4.2 38 98-136 653-690 (1153)
24 KOG0444 Cytoskeletal regulator 93.2 0.026 5.6E-07 47.9 0.1 56 75-137 128-183 (1255)
25 PF13516 LRR_6: Leucine Rich r 92.8 0.029 6.4E-07 26.2 -0.1 20 101-120 1-20 (24)
26 KOG4658 Apoptotic ATPase [Sign 92.5 0.054 1.2E-06 47.5 1.1 41 95-137 588-628 (889)
27 KOG0618 Serine/threonine phosp 92.4 0.045 9.8E-07 47.8 0.5 37 74-115 384-420 (1081)
28 PLN03210 Resistant to P. syrin 91.4 0.24 5.2E-06 44.6 3.9 39 96-136 796-834 (1153)
29 KOG0617 Ras suppressor protein 90.5 0.071 1.5E-06 38.3 -0.2 37 98-136 75-111 (264)
30 smart00369 LRR_TYP Leucine-ric 90.2 0.24 5.3E-06 23.3 1.7 19 101-120 1-19 (26)
31 smart00370 LRR Leucine-rich re 90.2 0.24 5.3E-06 23.3 1.7 19 101-120 1-19 (26)
32 cd00116 LRR_RI Leucine-rich re 89.6 0.13 2.8E-06 38.8 0.6 34 102-136 250-287 (319)
33 KOG2739 Leucine-rich acidic nu 89.5 0.21 4.6E-06 37.5 1.6 32 102-135 91-124 (260)
34 cd00116 LRR_RI Leucine-rich re 88.6 0.2 4.4E-06 37.7 1.0 37 99-136 133-174 (319)
35 PRK15387 E3 ubiquitin-protein 88.2 0.16 3.4E-06 44.0 0.2 31 95-126 438-468 (788)
36 PRK15370 E3 ubiquitin-protein 86.8 0.79 1.7E-05 39.7 3.6 31 103-137 263-293 (754)
37 KOG0444 Cytoskeletal regulator 86.2 0.28 6.1E-06 41.9 0.6 57 74-137 104-160 (1255)
38 PRK15370 E3 ubiquitin-protein 86.0 0.99 2.1E-05 39.1 3.8 19 25-43 58-76 (754)
39 COG4886 Leucine-rich repeat (L 85.8 0.69 1.5E-05 36.3 2.6 55 75-137 118-173 (394)
40 smart00368 LRR_RI Leucine rich 85.4 0.67 1.4E-05 22.5 1.5 14 102-115 2-15 (28)
41 KOG2982 Uncharacterized conser 84.9 0.24 5.3E-06 38.5 -0.3 44 74-120 72-115 (418)
42 KOG2739 Leucine-rich acidic nu 84.9 0.57 1.2E-05 35.3 1.6 39 98-137 61-101 (260)
43 smart00365 LRR_SD22 Leucine-ri 84.8 0.82 1.8E-05 22.0 1.6 15 101-115 1-15 (26)
44 KOG1259 Nischarin, modulator o 84.4 0.41 8.9E-06 37.4 0.7 35 100-137 305-339 (490)
45 KOG0618 Serine/threonine phosp 84.1 0.29 6.3E-06 43.0 -0.2 57 75-137 361-417 (1081)
46 KOG4237 Extracellular matrix p 83.9 0.29 6.3E-06 39.3 -0.3 61 74-135 275-354 (498)
47 KOG3207 Beta-tubulin folding c 81.1 0.37 8E-06 39.0 -0.7 59 74-135 147-205 (505)
48 KOG1859 Leucine-rich repeat pr 80.6 0.31 6.7E-06 42.1 -1.3 36 99-137 184-219 (1096)
49 KOG1644 U2-associated snRNP A' 79.4 2.3 5E-05 31.3 3.0 12 123-134 109-120 (233)
50 KOG1259 Nischarin, modulator o 79.0 1.4 3E-05 34.5 1.9 36 74-116 308-343 (490)
51 KOG1644 U2-associated snRNP A' 76.8 4.4 9.5E-05 29.9 3.8 55 74-137 43-98 (233)
52 COG4886 Leucine-rich repeat (L 74.5 1.3 2.8E-05 34.7 0.7 55 74-136 141-195 (394)
53 COG5238 RNA1 Ran GTPase-activa 74.1 3.2 6.9E-05 32.1 2.6 40 98-137 88-130 (388)
54 KOG1859 Leucine-rich repeat pr 73.3 1 2.2E-05 39.1 -0.2 16 123-138 250-265 (1096)
55 KOG0531 Protein phosphatase 1, 70.8 2.4 5.1E-05 33.8 1.3 56 74-138 96-151 (414)
56 smart00364 LRR_BAC Leucine-ric 70.2 2.8 6E-05 20.2 1.0 18 102-120 2-19 (26)
57 KOG0531 Protein phosphatase 1, 70.0 3.2 7E-05 33.1 2.0 53 75-137 120-172 (414)
58 KOG4579 Leucine-rich repeat (L 59.7 0.53 1.1E-05 32.7 -3.6 53 75-135 79-131 (177)
59 KOG3665 ZYG-1-like serine/thre 59.4 4.8 0.0001 34.7 1.2 14 99-112 217-230 (699)
60 KOG0532 Leucine-rich repeat (L 59.2 5.8 0.00013 33.6 1.6 31 103-135 212-242 (722)
61 KOG3665 ZYG-1-like serine/thre 56.6 4.9 0.00011 34.7 0.8 17 99-115 170-186 (699)
62 PF13306 LRR_5: Leucine rich r 44.0 48 0.0011 21.0 3.9 54 74-135 36-89 (129)
63 KOG1909 Ran GTPase-activating 42.9 8.2 0.00018 30.6 0.0 36 99-134 89-127 (382)
64 KOG0532 Leucine-rich repeat (L 42.7 20 0.00043 30.6 2.2 40 74-120 212-251 (722)
65 KOG3207 Beta-tubulin folding c 41.5 13 0.00028 30.5 0.9 12 74-85 247-258 (505)
66 PF07172 GRP: Glycine rich pro 40.2 26 0.00057 22.3 2.1 12 1-13 1-12 (95)
67 smart00367 LRR_CC Leucine-rich 34.1 29 0.00063 15.9 1.2 12 102-113 2-13 (26)
68 TIGR00864 PCC polycystin catio 33.3 29 0.00062 34.7 2.0 33 79-116 1-33 (2740)
69 smart00446 LRRcap occurring C- 30.3 24 0.00051 16.9 0.5 15 122-136 8-22 (26)
70 KOG0473 Leucine-rich repeat pr 29.6 5.1 0.00011 30.3 -2.8 61 73-135 42-119 (326)
71 KOG2982 Uncharacterized conser 28.7 58 0.0013 25.7 2.6 69 63-137 86-156 (418)
72 KOG3864 Uncharacterized conser 26.2 17 0.00038 26.7 -0.5 37 100-137 149-186 (221)
73 KOG2120 SCF ubiquitin ligase, 25.5 14 0.0003 29.1 -1.2 38 98-136 206-243 (419)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.49 E-value=1.8e-13 Score=117.79 Aligned_cols=100 Identities=23% Similarity=0.455 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHhhCC-CCCCCCCCCCCCCCCCCeeeeeeEEcCCCCCEEEEEcCCCCcccccccccCcccccCCcCCcE
Q 032440 28 LEQERSALLQLKHFFN-DDHRLQNWVDDENYSDCCQWERVECNNTTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLES 106 (140)
Q Consensus 28 ~~~~~~~L~~~k~~l~-~~~~l~~W~~~~~~~~~C~w~gv~c~~~~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~ 106 (140)
.+.|..+|++||+.+. +.+.+.+|+ ...++|.|.||.|+. .++|+.++++++++. |. + +..+..+++|+.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~--~~--~-~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNIS--GK--I-SSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCcc--cc--C-ChHHhCCCCCCE
Confidence 5688999999999987 666778997 567899999999986 579999999998875 53 2 445788999999
Q ss_pred EEccCCccccccCchhhh-CCCCCCeeeeece
Q 032440 107 LDLIGNNIAGCVENEGLE-RLSRWSFITQTLI 137 (140)
Q Consensus 107 L~Ls~N~l~G~iP~~~l~-~l~~L~~L~L~~~ 137 (140)
|+|++|+++|.+|. .+. .+++|++|+|+.+
T Consensus 98 L~Ls~n~~~~~ip~-~~~~~l~~L~~L~Ls~n 128 (968)
T PLN00113 98 INLSNNQLSGPIPD-DIFTTSSSLRYLNLSNN 128 (968)
T ss_pred EECCCCccCCcCCh-HHhccCCCCCEEECcCC
Confidence 99999999999998 455 8888888888653
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.18 E-value=8.8e-11 Score=97.59 Aligned_cols=101 Identities=23% Similarity=0.264 Sum_probs=63.5
Q ss_pred CCcHHHHHHHHHHHhhCC-CCCCCCCCCCCCCCCCCe-----eeeeeEEcCC--C--CCEEEEEcCCCCccccccc----
Q 032440 26 GCLEQERSALLQLKHFFN-DDHRLQNWVDDENYSDCC-----QWERVECNNT--T--GRVIKLDLTQTRKWESAEW---- 91 (140)
Q Consensus 26 ~~~~~~~~~L~~~k~~l~-~~~~l~~W~~~~~~~~~C-----~w~gv~c~~~--~--~~v~~l~l~~~~l~~~g~~---- 91 (140)
...+.|..+|..+|+.+. +. ..+|. ++|| .|.||.|... . ..++.++|+++++. |.+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~--~~~W~-----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~--g~ip~~i 438 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPL--RFGWN-----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR--GFIPNDI 438 (623)
T ss_pred ccCchHHHHHHHHHHhcCCcc--cCCCC-----CCCCCCcccccccceeeccCCCCceEEEEEECCCCCcc--ccCCHHH
Confidence 445678999999999886 32 13797 2566 6999999531 1 24788888887764 321
Q ss_pred --------------c---cCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 92 --------------Y---MNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 92 --------------~---~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
. ..|+.++.+++|+.|||++|+++|.+|. .++++++|++|+|+.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNLNG 499 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCEEECcC
Confidence 0 0122345566666666666666666666 466666666666654
No 3
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.76 E-value=1.1e-08 Score=56.08 Aligned_cols=38 Identities=42% Similarity=0.809 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhCC-C-CCCCCCCCCCCCC--CCCeeeeeeEEc
Q 032440 29 EQERSALLQLKHFFN-D-DHRLQNWVDDENY--SDCCQWERVECN 69 (140)
Q Consensus 29 ~~~~~~L~~~k~~l~-~-~~~l~~W~~~~~~--~~~C~w~gv~c~ 69 (140)
++|+++|++||+.+. + .+.+.+|+ .. .+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~---~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN---PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT-----TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC---CcCCCCCeeeccEEeC
Confidence 578999999999998 3 47799998 33 799999999995
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.5e-07 Score=54.14 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=48.7
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
++..++++++.+. .+++..|..+++|++|++++|.++.--|. .+..+++|++|+++.+
T Consensus 2 ~L~~L~l~~n~l~-----~i~~~~f~~l~~L~~L~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLT-----EIPPDSFSNLPNLETLDLSNNNLTSIPPD-AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTES-----EECTTTTTTGTTESEEEETSSSESEEETT-TTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCC-----ccCHHHHcCCCCCCEeEccCCccCccCHH-HHcCCCCCCEEeCcCC
Confidence 4678889988775 45566789999999999999999866666 7999999999999764
No 5
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=2e-06 Score=71.76 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=36.9
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCC-CCCCeeeeec
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERL-SRWSFITQTL 136 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l-~~L~~L~L~~ 136 (140)
+..+++++|.+. |.+ |+.++.+++|+.|+|++|+++|.+|. .++.. .++..+++.-
T Consensus 468 L~~LdLs~N~ls--g~i---P~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 468 LEVLDLSYNSFN--GSI---PESLGQLTSLRILNLNGNSLSGRVPA-ALGGRLLHRASFNFTD 524 (623)
T ss_pred CCEEECCCCCCC--CCC---chHHhcCCCCCEEECcCCcccccCCh-HHhhccccCceEEecC
Confidence 445555555554 422 45577888888888888888888888 57653 3555665543
No 6
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=8.2e-06 Score=44.85 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=16.8
Q ss_pred CCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 103 QLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 103 ~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+|++|++++|+++ .||+ .+++|++|++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETS
T ss_pred cceEEEccCCCCc-ccCc-hHhCCCCCCEEEecC
Confidence 4555555555555 4555 355555555555554
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.56 E-value=7.3e-05 Score=64.99 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=22.7
Q ss_pred cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..++.|+.||+++|+++|.+|. .+.++++|++|+++.
T Consensus 542 ~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~l~ls~ 580 (968)
T PLN00113 542 SFSEMPVLSQLDLSQNQLSGEIPK-NLGNVESLVQVNISH 580 (968)
T ss_pred hHhCcccCCEEECCCCcccccCCh-hHhcCcccCEEeccC
Confidence 345555666666666666666665 455666666666554
No 8
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.44 E-value=5.3e-05 Score=35.34 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=18.4
Q ss_pred CCcEEEccCCccccccCchhhhCC
Q 032440 103 QLESLDLIGNNIAGCVENEGLERL 126 (140)
Q Consensus 103 ~L~~L~Ls~N~l~G~iP~~~l~~l 126 (140)
+|++||+++|+++ .||+ .+++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~-~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPS-SFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGT-TTTT-
T ss_pred CccEEECCCCcCE-eCCh-hhcCC
Confidence 4799999999999 9999 57654
No 9
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.03 E-value=0.00061 Score=37.28 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCc
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVEN 120 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~ 120 (140)
.+..++++++++. ++++ .+..++.|+.|++++|.++ .||+
T Consensus 2 ~L~~L~l~~N~i~-----~l~~-~l~~l~~L~~L~l~~N~i~-~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQIT-----DLPP-ELSNLPNLETLNLSNNPIS-DISP 41 (44)
T ss_dssp T-SEEEETSSS-S-----SHGG-HGTTCTTSSEEEETSSCCS-BEGG
T ss_pred cceEEEccCCCCc-----ccCc-hHhCCCCCCEEEecCCCCC-CCcC
Confidence 3567889999875 3434 4889999999999999998 4543
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.57 E-value=0.0016 Score=37.71 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=29.4
Q ss_pred cCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 102 QQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 102 ~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
++|++|++++|+++ .||++.+..+++|++|+++-+
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N 35 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNN 35 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSS
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCC
Confidence 47899999999999 455447899999999999854
No 11
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.39 E-value=0.00077 Score=46.43 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=45.8
Q ss_pred CCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 73 ~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
-+++.+++++|.+. ++++..-..++.++.|++++|.++ .+|.| ++.++.|+.|+++||
T Consensus 53 ~el~~i~ls~N~fk-----~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-----KFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPALRSLNLRFN 110 (177)
T ss_pred ceEEEEecccchhh-----hCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHhhhcccccC
Confidence 46888999999775 454443344668899999999987 58984 999999999999987
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.18 E-value=0.0037 Score=49.67 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=42.9
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCee
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFI 132 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L 132 (140)
..++|+|..|... .+++..|..+++|+.||||+|+++--=|+ .|..+.+|..|
T Consensus 68 ~tveirLdqN~I~-----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~L 120 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-----SIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSL 120 (498)
T ss_pred cceEEEeccCCcc-----cCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHH
Confidence 4788999999765 56677899999999999999999977777 57777666544
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.16 E-value=0.00079 Score=48.15 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=34.2
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.++.+.+++|.++ .+ |+.+..+.+|+.|++++|++. .+|. +++++++|+.|+++.
T Consensus 34 ~ITrLtLSHNKl~-----~v-ppnia~l~nlevln~~nnqie-~lp~-~issl~klr~lnvgm 88 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-----VV-PPNIAELKNLEVLNLSNNQIE-ELPT-SISSLPKLRILNVGM 88 (264)
T ss_pred hhhhhhcccCcee-----ec-CCcHHHhhhhhhhhcccchhh-hcCh-hhhhchhhhheecch
Confidence 4667777777664 22 233666777777777777665 4555 466666666666553
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.73 E-value=0.0061 Score=48.74 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=36.9
Q ss_pred cCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 93 MNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 93 ~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
++++.+.++.+|..|||.+|.+. .||+ .+|+|++|++|+|..+
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp-~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPP-ILGNMTNLRHLELDGN 538 (565)
T ss_pred cChHHhhhhhhcceeccCCCchh-hCCh-hhccccceeEEEecCC
Confidence 44555788999999999999987 6888 6999999999999764
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.52 E-value=0.011 Score=42.00 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=3.5
Q ss_pred cCCcCCcEEEccCCccc
Q 032440 99 TPFQQLESLDLIGNNIA 115 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~ 115 (140)
..++.|+.|++++|.++
T Consensus 61 ~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 61 PGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ---TT--EEE--SS---
T ss_pred cChhhhhhcccCCCCCC
Confidence 33444455555555444
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.93 E-value=0.022 Score=47.70 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 73 ~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
..+..++|++|..+. +....|..+.+|..+.|+.|+++- +|...|.++++|+.|+|.+|
T Consensus 173 ~ni~~L~La~N~It~-----l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 173 VNIKKLNLASNRITT-----LETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred CCceEEeeccccccc-----cccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhcccc
Confidence 356777777776542 334568889999999999999985 55446888999999999876
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=94.85 E-value=0.021 Score=40.58 Aligned_cols=59 Identities=25% Similarity=0.252 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
++..+++++|...+++ +.....+++|+.|++++|++..----..++.+++|++|+|..|
T Consensus 65 ~L~~L~L~~N~I~~i~-----~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 65 RLKTLDLSNNRISSIS-----EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp T--EEE--SS---S-C-----HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred hhhhcccCCCCCCccc-----cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 4667777777664222 1111357889999999988865211114778888888888654
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.65 E-value=0.014 Score=46.75 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=43.6
Q ss_pred CCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 73 ~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.++.-+|+..|.+.++ |+.++-+++|++||+|+|.++| +|. ++|++ +|++|.+-.
T Consensus 252 ~~l~vLDLRdNklke~------Pde~clLrsL~rLDlSNN~is~-Lp~-sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKEV------PDEICLLRSLERLDLSNNDISS-LPY-SLGNL-HLKFLALEG 306 (565)
T ss_pred ccceeeeccccccccC------chHHHHhhhhhhhcccCCcccc-CCc-ccccc-eeeehhhcC
Confidence 3577788888877522 5668899999999999999997 566 49999 899887654
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.51 E-value=0.019 Score=48.06 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=31.7
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+.+|+.|+.|+||+|.+.--=++ +|..+++|+.|+|++|
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d-~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHID-SWSFTQKLKELDLSSN 327 (873)
T ss_pred ccccchhhhhccchhhhheeecc-hhhhcccceeEecccc
Confidence 56788888888888888876666 6888888888888876
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.03 E-value=0.026 Score=49.40 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=27.0
Q ss_pred cccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
.+.|-.++.|+.||||+|.=-+.+|. .|+.+-+|++|+|.
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLS 603 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhccccc
Confidence 33456677777777777666666777 47777777777664
No 21
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.64 E-value=0.049 Score=23.47 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=9.5
Q ss_pred cCCcEEEccCCccc
Q 032440 102 QQLESLDLIGNNIA 115 (140)
Q Consensus 102 ~~L~~L~Ls~N~l~ 115 (140)
++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 47899999999976
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=93.29 E-value=0.056 Score=46.72 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=23.2
Q ss_pred CCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 103 QLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 103 ~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.|+.|++++|+++ .||. .+.++++|++|+|+.|
T Consensus 423 ~L~~L~Ls~NqLt-~LP~-sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPE-SLIHLSSETTVNLEGN 455 (788)
T ss_pred hhhhhhhccCccc-ccCh-HHhhccCCCeEECCCC
Confidence 4566666666666 6777 5778888888887654
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.21 E-value=0.12 Score=46.60 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=28.4
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
++.+++|+.|++++|..-..+|. .++++++|+.|+++.
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSR 690 (1153)
T ss_pred cccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCC
Confidence 56677788888887776777887 577788787777753
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=93.20 E-value=0.026 Score=47.85 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=39.2
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+-++|+.|+.. .||.+.+-+|+.|-.||||+|.+. .+|+ .+..+.+|++|+|+-|
T Consensus 128 ~iVLNLS~N~Ie-----tIPn~lfinLtDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 128 SIVLNLSYNNIE-----TIPNSLFINLTDLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNN 183 (1255)
T ss_pred cEEEEcccCccc-----cCCchHHHhhHhHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCC
Confidence 334455555432 344555778888888999999887 5777 4888888888888754
No 25
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.76 E-value=0.029 Score=26.18 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=13.9
Q ss_pred CcCCcEEEccCCccccccCc
Q 032440 101 FQQLESLDLIGNNIAGCVEN 120 (140)
Q Consensus 101 l~~L~~L~Ls~N~l~G~iP~ 120 (140)
+++|+.|++++|.++..-..
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHH
Confidence 36789999999999876554
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.53 E-value=0.054 Score=47.46 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=37.2
Q ss_pred cccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
|+.++.|-+|++|+++...++ .+|. .++++..|.+|++.+.
T Consensus 588 P~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVT 628 (889)
T ss_pred ChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhheeccccc
Confidence 566899999999999999999 8999 7999999999999863
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=92.40 E-value=0.045 Score=47.76 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccc
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIA 115 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~ 115 (140)
++.-++|+.|++. .++...+.++..|+.|+||+|.++
T Consensus 384 hLKVLhLsyNrL~-----~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLN-----SFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred ceeeeeecccccc-----cCCHHHHhchHHhHHHhcccchhh
Confidence 4666777777653 355555667777777777777766
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=91.38 E-value=0.24 Score=44.64 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=25.2
Q ss_pred ccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 96 ~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
..++++++|+.|+++++..-+.+|. .+ ++++|++|+|+.
T Consensus 796 ~si~~L~~L~~L~Ls~C~~L~~LP~-~~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 796 SSIQNLHKLEHLEIENCINLETLPT-GI-NLESLESLDLSG 834 (1153)
T ss_pred hhhhCCCCCCEEECCCCCCcCeeCC-CC-CccccCEEECCC
Confidence 3466777777777777665666776 34 566666666653
No 29
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=90.53 E-value=0.071 Score=38.33 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=18.6
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
++.++.|+.|+++-|.+. ..|. .+|.++.|+.|||+.
T Consensus 75 issl~klr~lnvgmnrl~-~lpr-gfgs~p~levldlty 111 (264)
T KOG0617|consen 75 ISSLPKLRILNVGMNRLN-ILPR-GFGSFPALEVLDLTY 111 (264)
T ss_pred hhhchhhhheecchhhhh-cCcc-ccCCCchhhhhhccc
Confidence 445555555555555544 2333 455555555555544
No 30
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.24 E-value=0.24 Score=23.33 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=15.5
Q ss_pred CcCCcEEEccCCccccccCc
Q 032440 101 FQQLESLDLIGNNIAGCVEN 120 (140)
Q Consensus 101 l~~L~~L~Ls~N~l~G~iP~ 120 (140)
+++|+.|+|++|+++- ||.
T Consensus 1 L~~L~~L~L~~N~l~~-lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSS-LPP 19 (26)
T ss_pred CCCCCEEECCCCcCCc-CCH
Confidence 4689999999999884 565
No 31
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.24 E-value=0.24 Score=23.33 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=15.5
Q ss_pred CcCCcEEEccCCccccccCc
Q 032440 101 FQQLESLDLIGNNIAGCVEN 120 (140)
Q Consensus 101 l~~L~~L~Ls~N~l~G~iP~ 120 (140)
+++|+.|+|++|+++- ||.
T Consensus 1 L~~L~~L~L~~N~l~~-lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSS-LPP 19 (26)
T ss_pred CCCCCEEECCCCcCCc-CCH
Confidence 4689999999999884 565
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=89.63 E-value=0.13 Score=38.77 Aligned_cols=34 Identities=18% Similarity=0.038 Sum_probs=15.1
Q ss_pred cCCcEEEccCCccc----cccCchhhhCCCCCCeeeeec
Q 032440 102 QQLESLDLIGNNIA----GCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 102 ~~L~~L~Ls~N~l~----G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+.|+.|++++|.++ ..++. .+..+++|++++++.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~-~~~~~~~L~~l~l~~ 287 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAE-VLAEKESLLELDLRG 287 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHH-HHhcCCCccEEECCC
Confidence 34455555555444 12223 233444555555543
No 33
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.46 E-value=0.21 Score=37.54 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=15.4
Q ss_pred cCCcEEEccCCccc--cccCchhhhCCCCCCeeeee
Q 032440 102 QQLESLDLIGNNIA--GCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 102 ~~L~~L~Ls~N~l~--G~iP~~~l~~l~~L~~L~L~ 135 (140)
++|+++++|+|++. -++++ +..+.+|..|++.
T Consensus 91 P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLF 124 (260)
T ss_pred CceeEEeecCCccccccccch--hhhhcchhhhhcc
Confidence 55555555555544 22332 3444445555443
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=88.65 E-value=0.2 Score=37.69 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=23.4
Q ss_pred cCC-cCCcEEEccCCccccc----cCchhhhCCCCCCeeeeec
Q 032440 99 TPF-QQLESLDLIGNNIAGC----VENEGLERLSRWSFITQTL 136 (140)
Q Consensus 99 ~~l-~~L~~L~Ls~N~l~G~----iP~~~l~~l~~L~~L~L~~ 136 (140)
..+ +.|+.|++++|.+++. ++. .+..+++|++|+|+.
T Consensus 133 ~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 174 (319)
T cd00116 133 KDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLAN 174 (319)
T ss_pred HhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcC
Confidence 344 6777777777777743 333 355566777777754
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=88.22 E-value=0.16 Score=44.02 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=25.6
Q ss_pred cccccCCcCCcEEEccCCccccccCchhhhCC
Q 032440 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERL 126 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l 126 (140)
|+.++.++.|+.|++++|.|+|.+|. .+..+
T Consensus 438 P~sl~~L~~L~~LdLs~N~Ls~~~~~-~L~~l 468 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNPLSERTLQ-ALREI 468 (788)
T ss_pred ChHHhhccCCCeEECCCCCCCchHHH-HHHHH
Confidence 34477899999999999999999988 57444
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=86.83 E-value=0.79 Score=39.69 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=18.6
Q ss_pred CCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 103 QLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 103 ~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.|+.|++++|+++ .||. .+. ++|++|+|+.+
T Consensus 263 ~L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPE-NLP--EELRYLSVYDN 293 (754)
T ss_pred CCCEEECcCCccC-cccc-ccC--CCCcEEECCCC
Confidence 5666777777666 4665 343 35666666543
No 37
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=86.16 E-value=0.28 Score=41.87 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=39.2
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.++-+||+.|.+..+ |..+...+++-.|+||+|++. +||.+-+.+++.|-+|||+-|
T Consensus 104 dLt~lDLShNqL~Ev------P~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREV------PTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred cceeeecchhhhhhc------chhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 466677777766421 344666777778888888876 577755568888888888754
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=86.02 E-value=0.99 Score=39.10 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=12.2
Q ss_pred cCCcHHHHHHHHHHHhhCC
Q 032440 25 EGCLEQERSALLQLKHFFN 43 (140)
Q Consensus 25 ~~~~~~~~~~L~~~k~~l~ 43 (140)
....+.+...+.++.+.+.
T Consensus 58 ~~~~~~~~~~~~~~~~~l~ 76 (754)
T PRK15370 58 ETASPEEIKSKFECLRMLA 76 (754)
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 3445667777777776665
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=85.78 E-value=0.69 Score=36.25 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcccccccccCcccccCCc-CCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQ-QLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~-~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..+++.+++.. ++++ ....+. +|+.+++++|.+. .+|. .++++++|+.|+++++
T Consensus 118 l~~L~l~~n~i~-----~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N 173 (394)
T COG4886 118 LTSLDLDNNNIT-----DIPP-LIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeEEecCCcccc-----cCcc-ccccchhhcccccccccchh-hhhh-hhhccccccccccCCc
Confidence 555666665543 2333 234453 7888888888876 3444 4778888888887764
No 40
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.41 E-value=0.67 Score=22.45 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.0
Q ss_pred cCCcEEEccCCccc
Q 032440 102 QQLESLDLIGNNIA 115 (140)
Q Consensus 102 ~~L~~L~Ls~N~l~ 115 (140)
+.|+.|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 47899999999885
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.95 E-value=0.24 Score=38.47 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=26.2
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCc
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVEN 120 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~ 120 (140)
+|.++||.+|....-..+ ...+.++++|+.|++|.|.++..|-.
T Consensus 72 ~v~elDL~~N~iSdWseI---~~ile~lP~l~~LNls~N~L~s~I~~ 115 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEI---GAILEQLPALTTLNLSCNSLSSDIKS 115 (418)
T ss_pred hhhhhhcccchhccHHHH---HHHHhcCccceEeeccCCcCCCcccc
Confidence 466667766654310000 11245788888888888888766544
No 42
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.89 E-value=0.57 Score=35.28 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=31.3
Q ss_pred ccCCcCCcEEEccCC--ccccccCchhhhCCCCCCeeeeece
Q 032440 98 FTPFQQLESLDLIGN--NIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N--~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+-.++.|++|++|.| +.+|.++. ...++++|++|+|+.|
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGN 101 (260)
T ss_pred CCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCC
Confidence 445788999999999 67777777 5667899999998865
No 43
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.79 E-value=0.82 Score=21.97 Aligned_cols=15 Identities=47% Similarity=0.636 Sum_probs=12.7
Q ss_pred CcCCcEEEccCCccc
Q 032440 101 FQQLESLDLIGNNIA 115 (140)
Q Consensus 101 l~~L~~L~Ls~N~l~ 115 (140)
++.|+.|++++|.++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 467899999999885
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=84.36 E-value=0.41 Score=37.36 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=19.2
Q ss_pred CCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 100 PFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 100 ~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
-++.++.|++|+|.+.- + . .++.+++|+.|||+.|
T Consensus 305 L~Pkir~L~lS~N~i~~-v-~-nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRT-V-Q-NLAELPQLQLLDLSGN 339 (490)
T ss_pred hccceeEEeccccceee-e-h-hhhhcccceEeecccc
Confidence 35556666666666542 1 1 2555666666666654
No 45
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=84.13 E-value=0.29 Score=42.98 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=41.3
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..+.+.+|.+. . +.-| .+.+..+|+.|+|++|++. ++|++.+.++..|+.|+|+.|
T Consensus 361 Lq~LylanN~Lt--d--~c~p-~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 361 LQELYLANNHLT--D--SCFP-VLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred HHHHHHhcCccc--c--cchh-hhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccc
Confidence 334445555553 2 1222 3778999999999999986 678766788999999999876
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=83.86 E-value=0.29 Score=39.29 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=44.0
Q ss_pred CEEEEEcCCCCccccc----------------cc---ccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeee
Q 032440 74 RVIKLDLTQTRKWESA----------------EW---YMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQ 134 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g----------------~~---~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L 134 (140)
++..|+|++|.+..+. .. .+....|-++..|+.|+|++|+++---|. .|..+.+|..|+|
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-AFQTLFSLSTLNL 353 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-cccccceeeeeeh
Confidence 6788888888763110 00 11222367889999999999999999888 6888888888876
Q ss_pred e
Q 032440 135 T 135 (140)
Q Consensus 135 ~ 135 (140)
-
T Consensus 354 ~ 354 (498)
T KOG4237|consen 354 L 354 (498)
T ss_pred c
Confidence 4
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=81.06 E-value=0.37 Score=39.04 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=36.0
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
.|+.+||+.|-+...-++ .+....|++|+.|++|.|.+.-++.+..-..+++|+.|.|+
T Consensus 147 ~v~~LdLS~NL~~nw~~v---~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~ 205 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPV---LKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLN 205 (505)
T ss_pred cceeecchhhhHHhHHHH---HHHHHhcccchhcccccccccCCccccchhhhhhhheEEec
Confidence 477777777644310000 12235688888889998888777665322356677777664
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=80.62 E-value=0.31 Score=42.11 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=26.5
Q ss_pred cCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 99 TPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
--++.|+.||||+|.|+-.= .+..|++|++|||+||
T Consensus 184 qll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYN 219 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH---HHHhcccccccccccc
Confidence 34677888888888887542 3667888888888876
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=79.38 E-value=2.3 Score=31.26 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=6.0
Q ss_pred hhCCCCCCeeee
Q 032440 123 LERLSRWSFITQ 134 (140)
Q Consensus 123 l~~l~~L~~L~L 134 (140)
++.|++|++|.+
T Consensus 109 La~~p~L~~Ltl 120 (233)
T KOG1644|consen 109 LASCPKLEYLTL 120 (233)
T ss_pred hccCCccceeee
Confidence 444555555544
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=78.95 E-value=1.4 Score=34.51 Aligned_cols=36 Identities=33% Similarity=0.402 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCcccc
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAG 116 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G 116 (140)
.+..++++.|+...++ .+..+.+|+.||||+|.++-
T Consensus 308 kir~L~lS~N~i~~v~-------nLa~L~~L~~LDLS~N~Ls~ 343 (490)
T KOG1259|consen 308 KLRRLILSQNRIRTVQ-------NLAELPQLQLLDLSGNLLAE 343 (490)
T ss_pred ceeEEeccccceeeeh-------hhhhcccceEeecccchhHh
Confidence 3555666666543222 25678899999999998774
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=76.82 E-value=4.4 Score=29.85 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=39.4
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhh-CCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLE-RLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~-~l~~L~~L~L~~~ 137 (140)
....|||+.|++..+ ..|..++.|++|.|++|+++--=|. +. .+++|+.|.|+-|
T Consensus 43 ~~d~iDLtdNdl~~l-------~~lp~l~rL~tLll~nNrIt~I~p~--L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-------DNLPHLPRLHTLLLNNNRITRIDPD--LDTFLPNLKTLILTNN 98 (233)
T ss_pred ccceecccccchhhc-------ccCCCccccceEEecCCcceeeccc--hhhhccccceEEecCc
Confidence 356788888876321 2366789999999999999865554 44 4677888887653
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=74.52 E-value=1.3 Score=34.72 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=33.8
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.++.++++.+... .+ +..+..++.|+.|++++|+++ .+|. ..+.++.|+.|+++-
T Consensus 141 nL~~L~l~~N~i~-----~l-~~~~~~l~~L~~L~l~~N~l~-~l~~-~~~~~~~L~~L~ls~ 195 (394)
T COG4886 141 NLKELDLSDNKIE-----SL-PSPLRNLPNLKNLDLSFNDLS-DLPK-LLSNLSNLNNLDLSG 195 (394)
T ss_pred hcccccccccchh-----hh-hhhhhccccccccccCCchhh-hhhh-hhhhhhhhhheeccC
Confidence 4666666666543 11 123567778888888888777 3555 344666777776654
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=74.12 E-value=3.2 Score=32.12 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=31.8
Q ss_pred ccCCcCCcEEEccCCccccccCch---hhhCCCCCCeeeeece
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENE---GLERLSRWSFITQTLI 137 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~---~l~~l~~L~~L~L~~~ 137 (140)
+..+++|+.++||.|.|.-..|+. -|++-+.|++|.|.-+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 467899999999999999998873 3456788888887643
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=73.32 E-value=1 Score=39.12 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=11.1
Q ss_pred hhCCCCCCeeeeecee
Q 032440 123 LERLSRWSFITQTLII 138 (140)
Q Consensus 123 l~~l~~L~~L~L~~~~ 138 (140)
+.++.+|+.||+++|+
T Consensus 250 ie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNL 265 (1096)
T ss_pred HHhhhhhhccchhHhh
Confidence 5566777777777765
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=70.78 E-value=2.4 Score=33.84 Aligned_cols=56 Identities=21% Similarity=0.187 Sum_probs=36.2
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeecee
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLII 138 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~~ 138 (140)
.+..+++..+.+..+. . .+..+++|+.|++|+|.++.-.+ +..++.|+.|++.-|-
T Consensus 96 ~l~~l~l~~n~i~~i~-----~-~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIE-----N-LLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNL 151 (414)
T ss_pred ceeeeeccccchhhcc-----c-chhhhhcchheeccccccccccc---hhhccchhhheeccCc
Confidence 4566666666554111 1 14568888888888888876543 5567778888776653
No 56
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.18 E-value=2.8 Score=20.19 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=13.9
Q ss_pred cCCcEEEccCCccccccCc
Q 032440 102 QQLESLDLIGNNIAGCVEN 120 (140)
Q Consensus 102 ~~L~~L~Ls~N~l~G~iP~ 120 (140)
.+|+.|+.++|+|+ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 36889999999987 3554
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=70.04 E-value=3.2 Score=33.06 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..++++.|... ++.+ +..++.|+.|++++|.++. ++ .+..++.|+.++++.+
T Consensus 120 L~~L~ls~N~I~-----~i~~--l~~l~~L~~L~l~~N~i~~-~~--~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 120 LQVLDLSFNKIT-----KLEG--LSTLTLLKELNLSGNLISD-IS--GLESLKSLKLLDLSYN 172 (414)
T ss_pred chheeccccccc-----cccc--hhhccchhhheeccCcchh-cc--CCccchhhhcccCCcc
Confidence 455566666543 1211 4455567777777776663 22 2444666666666543
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=59.74 E-value=0.53 Score=32.71 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=38.1
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
.+.+++.+|.+. ++ |+.+..++.|+.|+++.|.|+-.. . .+..+.+|-+||..
T Consensus 79 ~t~lNl~~neis-----dv-PeE~Aam~aLr~lNl~~N~l~~~p-~-vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 79 ATTLNLANNEIS-----DV-PEELAAMPALRSLNLRFNPLNAEP-R-VIAPLIKLDMLDSP 131 (177)
T ss_pred hhhhhcchhhhh-----hc-hHHHhhhHHhhhcccccCccccch-H-HHHHHHhHHHhcCC
Confidence 566788888664 33 445899999999999999998654 3 36666666666543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=59.36 E-value=4.8 Score=34.68 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=7.8
Q ss_pred cCCcCCcEEEccCC
Q 032440 99 TPFQQLESLDLIGN 112 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N 112 (140)
.+|++|+.||+|..
T Consensus 217 F~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 217 FNLKKLRVLDISRD 230 (699)
T ss_pred hcccCCCeeecccc
Confidence 44556666666544
No 60
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=59.23 E-value=5.8 Score=33.59 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=24.5
Q ss_pred CCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 103 QLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 103 ~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
.|..||+|.|+++ .||. .|.++++|++|-|.
T Consensus 212 pLi~lDfScNkis-~iPv-~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 212 PLIRLDFSCNKIS-YLPV-DFRKMRHLQVLQLE 242 (722)
T ss_pred ceeeeecccCcee-ecch-hhhhhhhheeeeec
Confidence 4677888888887 5888 58888888888764
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=56.55 E-value=4.9 Score=34.65 Aligned_cols=17 Identities=47% Similarity=0.800 Sum_probs=9.3
Q ss_pred cCCcCCcEEEccCCccc
Q 032440 99 TPFQQLESLDLIGNNIA 115 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~ 115 (140)
.++++|..||+|+.+++
T Consensus 170 ~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNIS 186 (699)
T ss_pred hccCccceeecCCCCcc
Confidence 34555666666655444
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=43.96 E-value=48 Score=21.00 Aligned_cols=54 Identities=11% Similarity=0.244 Sum_probs=26.7
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
.+..+.+..+ +.. +....|..++.|+.+++.++ +. .++...+..+++|+.+++.
T Consensus 36 ~l~~i~~~~~-~~~-----i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 36 SLKSINFPNN-LTS-----IGDNAFSNCKSLESITFPNN-LK-SIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T-SEEEESST-TSC-----E-TTTTTT-TT-EEEEETST-T--EE-TTTTTT-TTECEEEET
T ss_pred cccccccccc-ccc-----cceeeeeccccccccccccc-cc-ccccccccccccccccccC
Confidence 3555555543 321 22334677777888888652 21 2333246668888887764
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=42.88 E-value=8.2 Score=30.59 Aligned_cols=36 Identities=17% Similarity=0.028 Sum_probs=24.2
Q ss_pred cCCcCCcEEEccCCccccccCch---hhhCCCCCCeeee
Q 032440 99 TPFQQLESLDLIGNNIAGCVENE---GLERLSRWSFITQ 134 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~G~iP~~---~l~~l~~L~~L~L 134 (140)
-..+.|+++|||.|.|.-.-+.. -+.+++.|+.|.|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L 127 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL 127 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh
Confidence 34568888888888887664441 3446777777665
No 64
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=42.70 E-value=20 Score=30.59 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=31.9
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCc
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVEN 120 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~ 120 (140)
.++.+|++.|+.. .+ |-.|..++.||+|.|-+|-|..+ |.
T Consensus 212 pLi~lDfScNkis-----~i-Pv~fr~m~~Lq~l~LenNPLqSP-PA 251 (722)
T KOG0532|consen 212 PLIRLDFSCNKIS-----YL-PVDFRKMRHLQVLQLENNPLQSP-PA 251 (722)
T ss_pred ceeeeecccCcee-----ec-chhhhhhhhheeeeeccCCCCCC-hH
Confidence 5788889988764 23 44689999999999999999864 44
No 65
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=41.53 E-value=13 Score=30.50 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=8.0
Q ss_pred CEEEEEcCCCCc
Q 032440 74 RVIKLDLTQTRK 85 (140)
Q Consensus 74 ~v~~l~l~~~~l 85 (140)
++.++||++|++
T Consensus 247 ~L~~LdLs~N~l 258 (505)
T KOG3207|consen 247 TLQELDLSNNNL 258 (505)
T ss_pred HHhhccccCCcc
Confidence 466677777765
No 66
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=40.22 E-value=26 Score=22.26 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=5.5
Q ss_pred CCCcchhHHHHHH
Q 032440 1 MCGSKRVWVSELI 13 (140)
Q Consensus 1 m~~~~~~~~~~ll 13 (140)
|. .|.++.+.++
T Consensus 1 Ma-SK~~llL~l~ 12 (95)
T PF07172_consen 1 MA-SKAFLLLGLL 12 (95)
T ss_pred Cc-hhHHHHHHHH
Confidence 44 5554444443
No 67
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=34.06 E-value=29 Score=15.95 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=8.5
Q ss_pred cCCcEEEccCCc
Q 032440 102 QQLESLDLIGNN 113 (140)
Q Consensus 102 ~~L~~L~Ls~N~ 113 (140)
++|+.|++++..
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567888877753
No 68
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.33 E-value=29 Score=34.66 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=22.9
Q ss_pred EcCCCCcccccccccCcccccCCcCCcEEEccCCcccc
Q 032440 79 DLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAG 116 (140)
Q Consensus 79 ~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G 116 (140)
||++|++. .+++..|..+++|+.|+|++|.|.-
T Consensus 1 DLSnN~Ls-----tLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKIS-----TIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCC-----ccChHHhccCCCceEEEeeCCcccc
Confidence 45666654 3455567778888888888886654
No 69
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=30.25 E-value=24 Score=16.92 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=10.7
Q ss_pred hhhCCCCCCeeeeec
Q 032440 122 GLERLSRWSFITQTL 136 (140)
Q Consensus 122 ~l~~l~~L~~L~L~~ 136 (140)
.+..+++|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 366788888888654
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=29.60 E-value=5.1 Score=30.33 Aligned_cols=61 Identities=15% Similarity=-0.031 Sum_probs=36.9
Q ss_pred CCEEEEEcCCCCccccccc-----------------ccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 73 GRVIKLDLTQTRKWESAEW-----------------YMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 73 ~~v~~l~l~~~~l~~~g~~-----------------~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
.+++.||++.+++..+|.. .+-|..+..+..++.+++..|+.+ ..|. +.+..++++++++-
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEPHPKKNEQK 119 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCc-cccccCCcchhhhc
Confidence 4688888888765322320 122333455555556666555554 6777 58888888887753
No 71
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.73 E-value=58 Score=25.75 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=43.6
Q ss_pred eeeeEEc-CCCCCEEEEEcCCCCccc-ccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 63 WERVECN-NTTGRVIKLDLTQTRKWE-SAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 63 w~gv~c~-~~~~~v~~l~l~~~~l~~-~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
|..|.|- ..-.+++.++++.|.+.+ ++. .| ..+.+|+.|.|.+.+++-.--.+.+.+++.++.|.++-|
T Consensus 86 WseI~~ile~lP~l~~LNls~N~L~s~I~~--lp----~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 86 WSEIGAILEQLPALTTLNLSCNSLSSDIKS--LP----LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHHHHHHHhcCccceEeeccCCcCCCcccc--Cc----ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 5555442 114578899999998752 121 11 346788888888888776644434667777777766544
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.24 E-value=17 Score=26.68 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=25.1
Q ss_pred CCcCCcEEEccCC-ccccccCchhhhCCCCCCeeeeece
Q 032440 100 PFQQLESLDLIGN-NIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 100 ~l~~L~~L~Ls~N-~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
..++|+.|+++++ ++|-.=-. .+..+++|+.|.|.+.
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDL 186 (221)
T ss_pred cccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCc
Confidence 4678999999977 45543223 4667788887776653
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=25.47 E-value=14 Score=29.14 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=28.6
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..++.|+.|.+-++.+.-+|-. .++.-++|+.|+|+.
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSM 243 (419)
T ss_pred HHHHHhhhhccccccccCcHHHH-HHhccccceeecccc
Confidence 34566777788888888888877 588888888887764
Done!