Query 032440
Match_columns 140
No_of_seqs 139 out of 1279
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 23:14:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.7 5.3E-16 1.8E-20 117.0 10.1 104 26-137 2-111 (313)
2 3rgz_A Protein brassinosteroid 99.6 3.3E-16 1.1E-20 130.5 8.2 105 24-137 6-136 (768)
3 4eco_A Uncharacterized protein 99.5 2E-13 6.9E-18 111.8 9.1 75 29-112 29-115 (636)
4 4ecn_A Leucine-rich repeat pro 99.4 3.3E-13 1.1E-17 114.4 8.1 80 27-117 266-363 (876)
5 4fcg_A Uncharacterized protein 99.1 1.8E-11 6.3E-16 92.7 0.2 102 26-135 23-135 (328)
6 2ifg_A High affinity nerve gro 98.6 8.2E-08 2.8E-12 72.5 5.6 72 60-137 7-90 (347)
7 3e6j_A Variable lymphocyte rec 98.5 1.8E-07 6.1E-12 67.2 6.8 74 56-135 14-96 (229)
8 2o6r_A Variable lymphocyte rec 98.4 4E-07 1.4E-11 62.5 6.1 38 98-136 72-109 (177)
9 3g39_A Variable lymphocyte rec 98.4 4.3E-07 1.5E-11 62.4 6.2 38 98-136 74-111 (170)
10 2o6s_A Variable lymphocyte rec 98.4 4.7E-07 1.6E-11 63.6 6.2 71 59-135 5-84 (208)
11 3rgz_A Protein brassinosteroid 98.4 3.1E-07 1.1E-11 76.5 5.3 40 97-137 675-714 (768)
12 1w8a_A SLIT protein; signaling 98.4 6.8E-07 2.3E-11 62.5 5.9 57 74-136 30-87 (192)
13 2v9t_B SLIT homolog 2 protein 98.3 6.9E-07 2.4E-11 63.8 5.7 71 60-136 10-89 (220)
14 2z81_A CD282 antigen, TOLL-lik 98.3 6.2E-07 2.1E-11 71.3 5.7 71 59-136 2-83 (549)
15 2z80_A TOLL-like receptor 2, v 98.2 1.4E-06 5E-11 65.8 5.9 74 56-136 25-109 (353)
16 3v47_A TOLL-like receptor 5B a 98.2 1.5E-06 5.1E-11 67.5 5.9 77 58-135 5-111 (455)
17 1w8a_A SLIT protein; signaling 98.2 1.4E-06 4.7E-11 60.8 4.7 58 74-137 79-136 (192)
18 3g39_A Variable lymphocyte rec 98.2 1.9E-06 6.6E-11 59.1 5.2 72 60-137 8-88 (170)
19 2r9u_A Variable lymphocyte rec 98.2 2.4E-06 8.2E-11 58.9 5.2 38 98-136 77-114 (174)
20 2z66_A Variable lymphocyte rec 98.1 2.9E-06 1E-10 62.8 5.6 72 60-137 6-88 (306)
21 2wfh_A SLIT homolog 2 protein 98.1 3.4E-06 1.2E-10 59.1 5.5 40 96-136 72-111 (193)
22 2r9u_A Variable lymphocyte rec 98.1 3.6E-06 1.2E-10 58.0 5.4 58 74-137 34-91 (174)
23 2o6q_A Variable lymphocyte rec 98.1 3.9E-06 1.3E-10 61.3 5.5 56 75-136 39-94 (270)
24 2wfh_A SLIT homolog 2 protein 98.1 7.5E-06 2.6E-10 57.3 6.0 71 60-137 9-88 (193)
25 2v70_A SLIT-2, SLIT homolog 2 98.1 6.1E-06 2.1E-10 58.8 5.6 42 95-137 122-163 (220)
26 2v70_A SLIT-2, SLIT homolog 2 98.1 4.8E-06 1.6E-10 59.3 5.0 57 75-137 83-139 (220)
27 2v9t_B SLIT homolog 2 protein 98.0 7E-06 2.4E-10 58.4 5.4 57 74-136 81-137 (220)
28 2ft3_A Biglycan; proteoglycan, 98.0 6.8E-06 2.3E-10 61.6 5.5 72 60-137 32-112 (332)
29 1xku_A Decorin; proteoglycan, 98.0 1.1E-05 3.9E-10 60.2 6.5 73 59-137 29-110 (330)
30 2o6r_A Variable lymphocyte rec 98.0 8.4E-06 2.9E-10 55.8 5.2 39 97-136 95-133 (177)
31 4g8a_A TOLL-like receptor 4; l 98.0 5.6E-06 1.9E-10 66.3 4.7 58 74-137 53-110 (635)
32 3e6j_A Variable lymphocyte rec 98.0 1E-05 3.4E-10 57.9 5.5 57 74-137 89-145 (229)
33 1ogq_A PGIP-2, polygalacturona 97.9 4.4E-06 1.5E-10 62.4 3.0 56 74-135 77-133 (313)
34 3vq2_A TLR4, TOLL-like recepto 97.9 1.6E-05 5.5E-10 63.9 6.2 41 95-136 73-113 (606)
35 4g8a_A TOLL-like receptor 4; l 97.9 1.1E-05 3.8E-10 64.5 5.2 57 74-136 495-551 (635)
36 4fcg_A Uncharacterized protein 97.9 1.7E-05 5.8E-10 59.7 5.4 36 98-134 273-308 (328)
37 2je0_A Acidic leucine-rich nuc 97.9 1.1E-05 3.9E-10 53.5 3.8 35 100-135 86-121 (149)
38 2o6s_A Variable lymphocyte rec 97.9 2.2E-05 7.4E-10 55.0 5.4 37 98-135 120-156 (208)
39 4ay9_X Follicle-stimulating ho 97.9 2E-05 6.9E-10 59.7 5.5 67 61-132 9-84 (350)
40 3m19_A Variable lymphocyte rec 97.8 2.1E-05 7.3E-10 56.7 5.2 39 97-136 78-116 (251)
41 3m19_A Variable lymphocyte rec 97.8 2.4E-05 8.3E-10 56.4 5.4 39 97-136 150-188 (251)
42 4eco_A Uncharacterized protein 97.8 1.5E-05 5.2E-10 65.1 4.3 61 73-137 206-283 (636)
43 2ell_A Acidic leucine-rich nuc 97.8 1.8E-05 6.3E-10 53.5 4.0 37 99-136 92-129 (168)
44 2xot_A Amphoterin-induced prot 97.8 3.6E-05 1.2E-09 58.5 5.7 37 98-135 84-120 (361)
45 3zyi_A Leucine-rich repeat-con 97.8 3.3E-05 1.1E-09 60.3 5.6 68 63-136 56-132 (452)
46 4ezg_A Putative uncharacterize 97.8 2.1E-05 7.2E-10 54.8 4.0 58 74-137 89-146 (197)
47 2z7x_B TOLL-like receptor 1, v 97.7 1.7E-05 5.7E-10 62.8 3.6 58 74-137 22-79 (520)
48 3a79_B TLR6, VLRB.59, TOLL-lik 97.7 3.1E-05 1.1E-09 62.0 5.1 58 74-137 53-110 (562)
49 3oja_A Leucine-rich immune mol 97.7 3.4E-05 1.2E-09 61.2 5.3 68 63-137 111-179 (487)
50 3rfs_A Internalin B, repeat mo 97.7 4.6E-05 1.6E-09 55.7 5.4 39 97-136 176-214 (272)
51 3rfs_A Internalin B, repeat mo 97.7 5.5E-05 1.9E-09 55.2 5.4 38 98-136 129-166 (272)
52 3t6q_A CD180 antigen; protein- 97.7 3.7E-05 1.3E-09 61.8 4.8 56 74-135 34-89 (606)
53 1ozn_A Reticulon 4 receptor; N 97.7 4.6E-05 1.6E-09 55.8 4.9 38 98-136 173-210 (285)
54 2xot_A Amphoterin-induced prot 97.7 4.3E-05 1.5E-09 58.1 4.9 58 74-137 89-146 (361)
55 3vq2_A TLR4, TOLL-like recepto 97.7 3.7E-05 1.3E-09 61.8 4.7 57 74-136 33-89 (606)
56 3j0a_A TOLL-like receptor 5; m 97.7 2.9E-05 9.7E-10 65.4 3.9 44 93-137 64-107 (844)
57 3v47_A TOLL-like receptor 5B a 97.7 4.7E-05 1.6E-09 59.0 4.8 59 74-137 80-139 (455)
58 1ozn_A Reticulon 4 receptor; N 97.7 5E-05 1.7E-09 55.6 4.7 57 74-136 33-89 (285)
59 2je0_A Acidic leucine-rich nuc 97.6 1.7E-05 5.7E-10 52.7 1.9 55 74-136 43-97 (149)
60 2z81_A CD282 antigen, TOLL-lik 97.6 3.6E-05 1.2E-09 61.1 4.1 38 98-136 94-132 (549)
61 2xwt_C Thyrotropin receptor; s 97.6 0.00012 4E-09 52.3 6.3 56 74-135 32-88 (239)
62 2z62_A TOLL-like receptor 4, v 97.6 6E-05 2.1E-09 54.9 4.8 41 95-136 69-109 (276)
63 2ifg_A High affinity nerve gro 97.6 5.3E-05 1.8E-09 57.0 4.5 58 73-137 56-113 (347)
64 2id5_A Lingo-1, leucine rich r 97.6 5.3E-05 1.8E-09 59.2 4.6 57 74-136 33-89 (477)
65 4ecn_A Leucine-rich repeat pro 97.6 4.7E-05 1.6E-09 64.8 4.3 61 73-137 448-525 (876)
66 1ziw_A TOLL-like receptor 3; i 97.6 6.5E-05 2.2E-09 61.2 5.0 57 74-136 26-82 (680)
67 1p9a_G Platelet glycoprotein I 97.6 8.7E-05 3E-09 54.9 5.2 36 99-135 145-180 (290)
68 2o6q_A Variable lymphocyte rec 97.6 9.9E-05 3.4E-09 53.7 5.4 37 98-135 129-165 (270)
69 3t6q_A CD180 antigen; protein- 97.6 5.8E-05 2E-09 60.6 4.5 57 74-136 58-114 (606)
70 2z62_A TOLL-like receptor 4, v 97.6 7.5E-05 2.6E-09 54.4 4.5 57 74-136 77-133 (276)
71 1dce_A Protein (RAB geranylger 97.6 7.5E-05 2.6E-09 60.5 4.9 56 74-137 487-543 (567)
72 2z66_A Variable lymphocyte rec 97.5 0.0001 3.5E-09 54.4 5.1 37 98-135 219-256 (306)
73 1a9n_A U2A', U2A'; complex (nu 97.5 7.3E-05 2.5E-09 51.0 4.0 37 99-136 85-122 (176)
74 1a9n_A U2A', U2A'; complex (nu 97.5 5.1E-05 1.7E-09 51.9 3.2 37 98-135 60-96 (176)
75 3j0a_A TOLL-like receptor 5; m 97.5 8.8E-05 3E-09 62.4 4.9 40 98-137 119-158 (844)
76 3oja_B Anopheles plasmodium-re 97.5 0.00011 3.9E-09 59.4 5.3 57 75-137 125-181 (597)
77 2z63_A TOLL-like receptor 4, v 97.5 9.7E-05 3.3E-09 58.7 4.8 56 75-136 54-109 (570)
78 4b8c_D Glucose-repressible alc 97.5 4E-05 1.4E-09 63.8 2.6 39 97-137 265-303 (727)
79 3zyi_A Leucine-rich repeat-con 97.5 0.00011 3.8E-09 57.3 5.0 57 74-136 100-156 (452)
80 3o6n_A APL1; leucine-rich repe 97.5 0.00011 3.9E-09 56.0 4.8 38 97-135 88-125 (390)
81 2id5_A Lingo-1, leucine rich r 97.5 0.00014 4.9E-09 56.8 5.4 56 75-136 82-137 (477)
82 4b8c_D Glucose-repressible alc 97.5 9.2E-05 3.2E-09 61.6 4.4 56 74-137 271-326 (727)
83 1dce_A Protein (RAB geranylger 97.5 0.0001 3.5E-09 59.7 4.6 55 74-137 464-518 (567)
84 3zyj_A Leucine-rich repeat-con 97.5 0.00011 3.9E-09 57.1 4.5 37 98-135 227-263 (440)
85 3oja_B Anopheles plasmodium-re 97.4 0.00012 4.1E-09 59.2 4.8 39 97-136 94-132 (597)
86 1wwl_A Monocyte differentiatio 97.4 7.5E-05 2.6E-09 55.6 3.3 58 74-137 150-211 (312)
87 1xku_A Decorin; proteoglycan, 97.4 0.00013 4.4E-09 54.5 4.6 36 98-135 236-271 (330)
88 3oja_A Leucine-rich immune mol 97.4 9.5E-05 3.2E-09 58.6 4.0 56 74-137 35-90 (487)
89 2z80_A TOLL-like receptor 2, v 97.4 0.00011 3.6E-09 55.5 4.1 57 74-136 77-133 (353)
90 3o6n_A APL1; leucine-rich repe 97.4 0.00019 6.4E-09 54.8 5.4 58 74-137 118-175 (390)
91 2ell_A Acidic leucine-rich nuc 97.4 0.00015 5E-09 49.0 4.3 58 74-137 96-157 (168)
92 2ft3_A Biglycan; proteoglycan, 97.4 9.1E-05 3.1E-09 55.4 3.5 41 95-137 234-274 (332)
93 2xwt_C Thyrotropin receptor; s 97.4 0.00011 3.8E-09 52.4 3.8 58 74-137 56-115 (239)
94 3zyj_A Leucine-rich repeat-con 97.4 0.00014 4.8E-09 56.5 4.7 38 98-136 108-145 (440)
95 4ezg_A Putative uncharacterize 97.4 0.00013 4.3E-09 50.7 4.0 56 74-137 67-122 (197)
96 1p9a_G Platelet glycoprotein I 97.4 0.00022 7.6E-09 52.7 5.5 57 74-136 101-157 (290)
97 2z63_A TOLL-like receptor 4, v 97.4 0.00016 5.5E-09 57.4 4.8 57 74-136 77-133 (570)
98 1ziw_A TOLL-like receptor 3; i 97.4 0.0002 6.9E-09 58.3 5.4 41 95-136 114-154 (680)
99 2z7x_B TOLL-like receptor 1, v 97.4 0.00018 6.3E-09 56.7 4.9 55 74-137 70-125 (520)
100 3a79_B TLR6, VLRB.59, TOLL-lik 97.3 0.00025 8.5E-09 56.7 4.5 37 100-137 119-156 (562)
101 1wwl_A Monocyte differentiatio 97.3 0.00014 4.8E-09 54.1 2.8 57 74-137 122-183 (312)
102 3o53_A Protein LRIM1, AGAP0063 97.2 0.00023 8E-09 53.0 3.6 56 74-137 192-247 (317)
103 4glp_A Monocyte differentiatio 97.2 0.00021 7.2E-09 53.0 3.2 58 74-136 146-206 (310)
104 3o53_A Protein LRIM1, AGAP0063 97.1 0.00054 1.8E-08 51.0 5.1 57 75-137 122-179 (317)
105 3rw6_A Nuclear RNA export fact 97.0 0.0005 1.7E-08 50.8 3.4 57 74-136 171-229 (267)
106 1h6t_A Internalin B; cell adhe 96.9 0.00082 2.8E-08 49.6 4.4 36 98-136 108-143 (291)
107 3cvr_A Invasion plasmid antige 96.9 0.00019 6.5E-09 58.4 0.9 66 56-136 38-109 (571)
108 2ast_B S-phase kinase-associat 96.9 0.0002 6.9E-09 53.2 0.6 38 98-136 114-151 (336)
109 4fmz_A Internalin; leucine ric 96.8 0.00098 3.3E-08 49.7 4.1 39 98-137 283-321 (347)
110 4glp_A Monocyte differentiatio 96.8 0.00093 3.2E-08 49.4 3.9 38 99-137 142-179 (310)
111 1h6t_A Internalin B; cell adhe 96.8 0.0016 5.6E-08 47.9 5.1 37 98-137 174-210 (291)
112 3g06_A SSPH2 (leucine-rich rep 96.8 0.0016 5.4E-08 53.4 5.4 36 100-137 259-294 (622)
113 1ds9_A Outer arm dynein; leuci 96.8 0.00011 3.8E-09 51.1 -1.3 55 74-137 49-103 (198)
114 1h6u_A Internalin H; cell adhe 96.8 0.0013 4.6E-08 48.7 4.4 36 98-136 103-138 (308)
115 3rw6_A Nuclear RNA export fact 96.8 0.00073 2.5E-08 49.9 2.9 37 100-137 168-206 (267)
116 1ds9_A Outer arm dynein; leuci 96.7 0.00012 4.3E-09 50.8 -1.7 55 74-137 71-125 (198)
117 1xeu_A Internalin C; cellular 96.7 0.0022 7.7E-08 46.5 5.0 35 98-135 124-158 (263)
118 2ca6_A RAN GTPase-activating p 96.7 0.00031 1.1E-08 53.5 0.4 38 98-136 212-253 (386)
119 1xeu_A Internalin C; cellular 96.6 0.0028 9.5E-08 46.0 5.2 38 97-137 145-182 (263)
120 1m9s_A Internalin B; cell inva 96.6 0.0019 6.6E-08 52.7 4.6 37 98-137 171-207 (605)
121 1h6u_A Internalin H; cell adhe 96.6 0.0025 8.6E-08 47.3 4.8 36 98-136 125-160 (308)
122 4fmz_A Internalin; leucine ric 96.6 0.00089 3E-08 50.0 2.3 55 75-137 289-343 (347)
123 1jl5_A Outer protein YOPM; leu 96.5 0.0015 5.2E-08 51.3 3.2 37 100-137 355-406 (454)
124 2ast_B S-phase kinase-associat 96.4 0.0014 4.8E-08 48.6 2.5 57 74-137 71-128 (336)
125 1m9s_A Internalin B; cell inva 96.4 0.0038 1.3E-07 50.9 4.9 34 99-135 128-161 (605)
126 3goz_A Leucine-rich repeat-con 96.3 0.0012 4.1E-08 50.0 1.7 58 74-137 52-119 (362)
127 3bz5_A Internalin-J, INLJ; leu 96.2 0.0059 2E-07 47.9 4.8 52 74-137 65-116 (457)
128 1o6v_A Internalin A; bacterial 96.1 0.0052 1.8E-07 47.9 4.4 37 98-137 108-144 (466)
129 1jl5_A Outer protein YOPM; leu 96.1 0.00013 4.4E-09 57.4 -4.9 50 73-129 11-60 (454)
130 1o6v_A Internalin A; bacterial 96.1 0.0071 2.4E-07 47.2 5.0 37 98-137 349-385 (466)
131 3cvr_A Invasion plasmid antige 96.0 0.0061 2.1E-07 49.5 4.4 31 105-137 210-240 (571)
132 2ca6_A RAN GTPase-activating p 95.9 0.0032 1.1E-07 47.9 2.1 37 99-136 91-131 (386)
133 3goz_A Leucine-rich repeat-con 95.8 0.0018 6.1E-08 49.0 0.4 59 73-137 80-148 (362)
134 3bz5_A Internalin-J, INLJ; leu 95.7 0.012 4.1E-07 46.2 4.9 35 98-136 208-242 (457)
135 4ay9_X Follicle-stimulating ho 95.6 0.014 4.8E-07 43.9 4.6 60 73-137 54-114 (350)
136 1z7x_W Ribonuclease inhibitor; 95.4 0.0023 7.7E-08 49.5 -0.3 36 101-137 369-408 (461)
137 1z7x_W Ribonuclease inhibitor; 95.3 0.0024 8.3E-08 49.3 -0.6 37 100-137 254-294 (461)
138 3sb4_A Hypothetical leucine ri 95.2 0.024 8.3E-07 42.1 4.7 55 74-135 227-282 (329)
139 3g06_A SSPH2 (leucine-rich rep 94.9 0.0046 1.6E-07 50.7 0.1 33 100-137 79-111 (622)
140 3rfe_A Platelet glycoprotein I 94.8 0.026 8.8E-07 36.8 3.4 35 102-137 31-65 (130)
141 3un9_A NLR family member X1; l 94.5 0.0052 1.8E-07 47.1 -0.5 38 99-137 208-249 (372)
142 3ogk_B Coronatine-insensitive 94.2 0.013 4.3E-07 46.7 1.1 58 75-137 465-523 (592)
143 3un9_A NLR family member X1; l 94.1 0.0085 2.9E-07 45.9 -0.2 38 99-137 180-221 (372)
144 3rfe_A Platelet glycoprotein I 93.6 0.059 2E-06 35.1 3.3 37 74-115 32-68 (130)
145 1io0_A Tropomodulin; LRR prote 93.0 0.017 5.7E-07 39.7 -0.1 12 74-85 66-77 (185)
146 3sb4_A Hypothetical leucine ri 92.1 0.14 4.7E-06 37.9 3.9 38 95-133 290-327 (329)
147 1io0_A Tropomodulin; LRR prote 91.3 0.04 1.4E-06 37.8 0.1 63 73-137 93-161 (185)
148 3e4g_A ATP synthase subunit S, 90.1 0.21 7.3E-06 34.4 2.9 34 74-112 62-95 (176)
149 3ogk_B Coronatine-insensitive 89.3 0.19 6.3E-06 39.9 2.5 37 100-137 461-498 (592)
150 2ra8_A Uncharacterized protein 88.3 0.12 4E-06 39.5 0.6 17 101-117 251-267 (362)
151 2p1m_B Transport inhibitor res 85.1 0.35 1.2E-05 38.3 1.8 34 101-135 455-489 (594)
152 2p1m_B Transport inhibitor res 83.9 0.42 1.5E-05 37.7 1.8 36 100-136 128-165 (594)
153 4h09_A Hypothetical leucine ri 82.9 1.3 4.4E-05 33.2 4.1 38 95-134 303-340 (379)
154 3e4g_A ATP synthase subunit S, 81.2 1.1 3.7E-05 30.8 2.8 34 102-136 61-94 (176)
155 4fdw_A Leucine rich hypothetic 79.9 1.5 5.1E-05 33.7 3.5 40 95-134 264-307 (401)
156 2ra8_A Uncharacterized protein 78.5 0.58 2E-05 35.6 0.8 36 101-137 278-317 (362)
157 4fs7_A Uncharacterized protein 77.7 2.4 8E-05 32.0 4.0 39 95-135 336-374 (394)
158 4gt6_A Cell surface protein; l 75.1 4.9 0.00017 30.2 5.2 38 96-135 328-365 (394)
159 4fdw_A Leucine rich hypothetic 70.0 6.9 0.00023 29.9 4.9 21 95-115 173-193 (401)
160 4h09_A Hypothetical leucine ri 69.8 4.4 0.00015 30.1 3.8 38 97-135 281-318 (379)
161 1pgv_A TMD-1, tropomodulin TMD 64.2 2 6.7E-05 30.0 0.8 12 74-85 71-82 (197)
162 4gt6_A Cell surface protein; l 57.2 12 0.0004 28.1 4.0 37 97-135 306-342 (394)
163 4fs7_A Uncharacterized protein 56.3 8.3 0.00028 28.9 3.1 38 96-135 314-351 (394)
164 2lz0_A Uncharacterized protein 49.6 22 0.00077 21.5 3.8 17 96-112 37-53 (100)
165 3ox7_P MH027; urokinase-type p 21.7 29 0.001 14.9 0.6 11 58-68 5-15 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=5.3e-16 Score=117.00 Aligned_cols=104 Identities=29% Similarity=0.503 Sum_probs=81.9
Q ss_pred CCcHHHHHHHHHHHhhCC-CCCCCCCCCCCCCCCCCee--eeeeEEcCCC--CCEEEEEcCCCCcccccccccCcccccC
Q 032440 26 GCLEQERSALLQLKHFFN-DDHRLQNWVDDENYSDCCQ--WERVECNNTT--GRVIKLDLTQTRKWESAEWYMNASLFTP 100 (140)
Q Consensus 26 ~~~~~~~~~L~~~k~~l~-~~~~l~~W~~~~~~~~~C~--w~gv~c~~~~--~~v~~l~l~~~~l~~~g~~~~~~~~l~~ 100 (140)
.|.++|+++|++||+++. +. .+.+|. ...+||. |.||.|+... ++|+.++++++++. |...+ |+.+..
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~--~~~~~-~~~l~~ 74 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP--KPYPI-PSSLAN 74 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCS--SCEEC-CGGGGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCcc--CCccc-ChhHhC
Confidence 588999999999999997 43 678997 5678998 9999998633 79999999999876 41012 445777
Q ss_pred CcCCcEEEccC-CccccccCchhhhCCCCCCeeeeece
Q 032440 101 FQQLESLDLIG-NNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 101 l~~L~~L~Ls~-N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+++|++|++++ |+++|.+|. .++++++|++|+|+.+
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHT 111 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEE
T ss_pred CCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCC
Confidence 88888888884 888888888 5888888888887654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.64 E-value=3.3e-16 Score=130.51 Aligned_cols=105 Identities=24% Similarity=0.371 Sum_probs=85.3
Q ss_pred ccCCcHHHHHHHHHHHhhCC-CCCCCCCCCCCCCCCCCeeeeeeEEcCCCCCEEEEEcCCCCcccccc---c--------
Q 032440 24 SEGCLEQERSALLQLKHFFN-DDHRLQNWVDDENYSDCCQWERVECNNTTGRVIKLDLTQTRKWESAE---W-------- 91 (140)
Q Consensus 24 ~~~~~~~~~~~L~~~k~~l~-~~~~l~~W~~~~~~~~~C~w~gv~c~~~~~~v~~l~l~~~~l~~~g~---~-------- 91 (140)
+....++|++||++||+.+. +. .+.+|. .+.+||.|.||.|+ .++|++++++++++. |. +
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~--g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPLN--VGFSAVSSSLLSLT 77 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCCC--EEHHHHHHHTTTCT
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCCCcC--CccCccChhHhccC
Confidence 33456789999999999998 65 889997 66789999999998 489999999988764 42 1
Q ss_pred ----------cc--CcccccCCcCCcEEEccCCccccccCc--hhhhCCCCCCeeeeece
Q 032440 92 ----------YM--NASLFTPFQQLESLDLIGNNIAGCVEN--EGLERLSRWSFITQTLI 137 (140)
Q Consensus 92 ----------~~--~~~~l~~l~~L~~L~Ls~N~l~G~iP~--~~l~~l~~L~~L~L~~~ 137 (140)
.+ .++.++.+++|++|||++|.++|.+|. + ++++++|++|+|+.+
T Consensus 78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-l~~l~~L~~L~Ls~n 136 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSN 136 (768)
T ss_dssp TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGG-GGGCTTCCEEECCSS
T ss_pred cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHH-HhCCCCCCEEECcCC
Confidence 00 014578899999999999999999987 5 899999999998754
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.45 E-value=2e-13 Score=111.76 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhhCC-C-CC-------CCCCCCCCCCCCCCeee---eeeEEcCCCCCEEEEEcCCCCcccccccccCcc
Q 032440 29 EQERSALLQLKHFFN-D-DH-------RLQNWVDDENYSDCCQW---ERVECNNTTGRVIKLDLTQTRKWESAEWYMNAS 96 (140)
Q Consensus 29 ~~~~~~L~~~k~~l~-~-~~-------~l~~W~~~~~~~~~C~w---~gv~c~~~~~~v~~l~l~~~~l~~~g~~~~~~~ 96 (140)
..|..||.+++.++. + .. ...+|+ .+.++|.| .||.|+. .++|++++|+++++. |.+ |+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~--g~l---p~ 99 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGAS--GRV---PD 99 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCE--EEE---CG
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecCcccC--CcC---Ch
Confidence 468999999999876 2 11 123798 66889999 9999987 589999999999987 743 45
Q ss_pred cccCCcCCcEEEccCC
Q 032440 97 LFTPFQQLESLDLIGN 112 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N 112 (140)
.++++++|++|||++|
T Consensus 100 ~l~~L~~L~~L~Ls~N 115 (636)
T 4eco_A 100 AIGQLTELEVLALGSH 115 (636)
T ss_dssp GGGGCTTCCEEESCCG
T ss_pred HHhcCccceEEECcCC
Confidence 6899999999999988
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=3.3e-13 Score=114.37 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=64.1
Q ss_pred CcHHHHHHHHHHHhhCC-CCCCCCCCCCCC--CCCCC--eee------------eeeEEcCCCCCEEEEEcCCCCccccc
Q 032440 27 CLEQERSALLQLKHFFN-DDHRLQNWVDDE--NYSDC--CQW------------ERVECNNTTGRVIKLDLTQTRKWESA 89 (140)
Q Consensus 27 ~~~~~~~~L~~~k~~l~-~~~~l~~W~~~~--~~~~~--C~w------------~gv~c~~~~~~v~~l~l~~~~l~~~g 89 (140)
...+|..||++||+++. + +|+.+. ...+| |.| .||.|+. .++|++++|+++++. |
T Consensus 266 ~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~--G 337 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK--G 337 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE--E
T ss_pred cchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC--C
Confidence 34579999999999986 3 787210 01356 999 9999987 689999999999987 7
Q ss_pred ccccCcccccCCcCCcEEEc-cCCccccc
Q 032440 90 EWYMNASLFTPFQQLESLDL-IGNNIAGC 117 (140)
Q Consensus 90 ~~~~~~~~l~~l~~L~~L~L-s~N~l~G~ 117 (140)
.+ |+.+++|++|+.||| ++|.++|.
T Consensus 338 ~i---p~~l~~L~~L~~LdLss~N~lsG~ 363 (876)
T 4ecn_A 338 RV---PDAIGQLTELKVLSFGTHSETVSG 363 (876)
T ss_dssp EE---CGGGGGCTTCCEEESCCTTHHHHT
T ss_pred cC---chHHhccccceEeeeccccccccc
Confidence 43 456999999999999 88877776
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.05 E-value=1.8e-11 Score=92.73 Aligned_cols=102 Identities=11% Similarity=0.138 Sum_probs=61.8
Q ss_pred CCcHHHHHHHHHHHhhCC--CCCCCCCCC-CCCCCCCCeeeeeeEEcC--------CCCCEEEEEcCCCCcccccccccC
Q 032440 26 GCLEQERSALLQLKHFFN--DDHRLQNWV-DDENYSDCCQWERVECNN--------TTGRVIKLDLTQTRKWESAEWYMN 94 (140)
Q Consensus 26 ~~~~~~~~~L~~~k~~l~--~~~~l~~W~-~~~~~~~~C~w~gv~c~~--------~~~~v~~l~l~~~~l~~~g~~~~~ 94 (140)
.+..+|+++|.+||..+. +.+....|. ......++|.|.|+.|+. ...+++.++++++++. .++
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-----~lp 97 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-----QFP 97 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-----SCC
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-----hcC
Confidence 455688999999999874 333456672 001456899999999952 2367899999988764 122
Q ss_pred cccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
+ .+..+++|++|++++|.++ .||. .++++++|++|+|+
T Consensus 98 ~-~l~~l~~L~~L~L~~n~l~-~lp~-~~~~l~~L~~L~Ls 135 (328)
T 4fcg_A 98 D-QAFRLSHLQHMTIDAAGLM-ELPD-TMQQFAGLETLTLA 135 (328)
T ss_dssp S-CGGGGTTCSEEEEESSCCC-CCCS-CGGGGTTCSEEEEE
T ss_pred h-hhhhCCCCCEEECCCCCcc-chhH-HHhccCCCCEEECC
Confidence 2 2344445555555555544 4444 34444444444444
No 6
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.55 E-value=8.2e-08 Score=72.52 Aligned_cols=72 Identities=8% Similarity=0.119 Sum_probs=58.5
Q ss_pred CeeeeeeEEcCC-----------CCCEEEEEcCC-CCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCC
Q 032440 60 CCQWERVECNNT-----------TGRVIKLDLTQ-TRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLS 127 (140)
Q Consensus 60 ~C~w~gv~c~~~-----------~~~v~~l~l~~-~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~ 127 (140)
.|.|..+.|.+. ..++..++|++ |.+. .+++..|..+++|+.|+|++|+|+|.+|. .|++++
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~ 80 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ-----HLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTP 80 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC-----EECGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCS
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCC-----CcChhHhccccCCCEEECCCCccceeCHH-HhcCCc
Confidence 378888888753 12478899986 7764 34566689999999999999999998888 699999
Q ss_pred CCCeeeeece
Q 032440 128 RWSFITQTLI 137 (140)
Q Consensus 128 ~L~~L~L~~~ 137 (140)
+|++|+|+.|
T Consensus 81 ~L~~L~l~~N 90 (347)
T 2ifg_A 81 RLSRLNLSFN 90 (347)
T ss_dssp CCCEEECCSS
T ss_pred CCCEEeCCCC
Confidence 9999999865
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.54 E-value=1.8e-07 Score=67.20 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=41.3
Q ss_pred CCCCCeeeeeeEEcCC---------CCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCC
Q 032440 56 NYSDCCQWERVECNNT---------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERL 126 (140)
Q Consensus 56 ~~~~~C~w~gv~c~~~---------~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l 126 (140)
.....|.|.++.|... ...+..++++++.+. + +.+..+..+++|+.|++++|.+++-.+. .++.+
T Consensus 14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~--~---~~~~~~~~l~~L~~L~L~~N~l~~i~~~-~~~~l 87 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQIT--K---LEPGVFDSLINLKELYLGSNQLGALPVG-VFDSL 87 (229)
T ss_dssp CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCC--C---CCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTC
T ss_pred CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccC--c---cCHHHhhCccCCcEEECCCCCCCCcChh-hcccC
Confidence 4678999999999741 124677888888764 1 2233344455555555555555322222 34444
Q ss_pred CCCCeeeee
Q 032440 127 SRWSFITQT 135 (140)
Q Consensus 127 ~~L~~L~L~ 135 (140)
++|++|+|+
T Consensus 88 ~~L~~L~Ls 96 (229)
T 3e6j_A 88 TQLTVLDLG 96 (229)
T ss_dssp TTCCEEECC
T ss_pred CCcCEEECC
Confidence 555555444
No 8
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.43 E-value=4e-07 Score=62.49 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=19.3
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..+++|+.|++++|.+++..|. .++.+++|++|+|+.
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNG-VFDKLTQLKELALDT 109 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred ccCCCccCEEECCCCCccccCHH-HhhCCcccCEEECcC
Confidence 34455555555555555544443 345555555555543
No 9
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.43 E-value=4.3e-07 Score=62.39 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=18.4
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
|..+++|++|+|++|++++-.|. .+.++++|++|+|+.
T Consensus 74 f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQLKSIPRG-AFDNLKSLTHIWLLN 111 (170)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred ccCCCCCCEEECCCCccCEeCHH-HhcCCCCCCEEEeCC
Confidence 34445555555555555543333 344555555555543
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.41 E-value=4.7e-07 Score=63.63 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=38.3
Q ss_pred CCeeeeeeEEcCC---------CCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCC
Q 032440 59 DCCQWERVECNNT---------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRW 129 (140)
Q Consensus 59 ~~C~w~gv~c~~~---------~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L 129 (140)
-.|.|.++.|... ...++.++++++.+. .+++..+..+++|++|++++|++++-.+. .++.+++|
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L 78 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLK-----SLPNGVFDELTSLTQLYLGGNKLQSLPNG-VFNKLTSL 78 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccC-----cCChhhhcccccCcEEECCCCccCccChh-hcCCCCCc
Confidence 3578999999641 124778888887764 12233344455555555555555433222 24445555
Q ss_pred Ceeeee
Q 032440 130 SFITQT 135 (140)
Q Consensus 130 ~~L~L~ 135 (140)
++|+|+
T Consensus 79 ~~L~Ls 84 (208)
T 2o6s_A 79 TYLNLS 84 (208)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 555444
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.38 E-value=3.1e-07 Score=76.49 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=22.3
Q ss_pred cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.++.++.|+.||||+|+++|.||. .++++++|++|+|+.+
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNN 714 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCG-GGGGCCCCSEEECCSS
T ss_pred HHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECcCC
Confidence 355555555555555555555555 3555555555555543
No 12
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.36 E-value=6.8e-07 Score=62.45 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=28.9
Q ss_pred CEEEEEcCCCCcccccccccCcc-cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNAS-LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~-~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.++.++++++.+. .+++. .+..+++|++|++++|.+++.+|. .++.+++|++|+|+.
T Consensus 30 ~l~~L~l~~n~i~-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 30 HTTELLLNDNELG-----RISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGE 87 (192)
T ss_dssp TCSEEECCSCCCC-----SBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCC-----ccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCC
Confidence 4556666666543 11221 244555555555555555555555 355555555555543
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.34 E-value=6.9e-07 Score=63.75 Aligned_cols=71 Identities=18% Similarity=0.367 Sum_probs=43.7
Q ss_pred CeeeeeeEEcCC---------CCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCC
Q 032440 60 CCQWERVECNNT---------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWS 130 (140)
Q Consensus 60 ~C~w~gv~c~~~---------~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~ 130 (140)
.|.|..+.|... ...++.++++++.+. .+++..|..+++|+.|++++|.+++-.|. .+..+++|+
T Consensus 10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~-----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~ 83 (220)
T 2v9t_B 10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIK-----VIPPGAFSPYKKLRRIDLSNNQISELAPD-AFQGLRSLN 83 (220)
T ss_dssp EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCC-----EECTTSSTTCTTCCEEECCSSCCCEECTT-TTTTCSSCC
T ss_pred EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCC-----CcCHhHhhCCCCCCEEECCCCcCCCcCHH-HhhCCcCCC
Confidence 356778888641 124777888887664 23343456666666666666666666566 466666666
Q ss_pred eeeeec
Q 032440 131 FITQTL 136 (140)
Q Consensus 131 ~L~L~~ 136 (140)
+|+|+.
T Consensus 84 ~L~Ls~ 89 (220)
T 2v9t_B 84 SLVLYG 89 (220)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 666654
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.33 E-value=6.2e-07 Score=71.28 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=41.0
Q ss_pred CCeeeeeeEEcCC-----------CCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCC
Q 032440 59 DCCQWERVECNNT-----------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLS 127 (140)
Q Consensus 59 ~~C~w~gv~c~~~-----------~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~ 127 (140)
..|.|.|+ |+.. ...++.++++++.+. .+.+..+..+++|++|++++|++++..|. .+++++
T Consensus 2 ~~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~ 74 (549)
T 2z81_A 2 LSCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKIT-----YIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLG 74 (549)
T ss_dssp CEECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCC-----EECSSTTSSCTTCCEEECTTSCCCEECTT-TTTTCT
T ss_pred ccCCCCce-EECCCCccccccccCCCCccEEECcCCccC-----ccChhhhhcCCcccEEECCCCCcCccChh-hccccc
Confidence 35888887 7531 125778888888764 12233455555555555555555555555 355555
Q ss_pred CCCeeeeec
Q 032440 128 RWSFITQTL 136 (140)
Q Consensus 128 ~L~~L~L~~ 136 (140)
+|++|+|+.
T Consensus 75 ~L~~L~Ls~ 83 (549)
T 2z81_A 75 SLEHLDLSD 83 (549)
T ss_dssp TCCEEECTT
T ss_pred cCCEEECCC
Confidence 555555543
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.25 E-value=1.4e-06 Score=65.83 Aligned_cols=74 Identities=24% Similarity=0.364 Sum_probs=44.5
Q ss_pred CCCCCeeeeeeEEcCC-----------CCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhh
Q 032440 56 NYSDCCQWERVECNNT-----------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLE 124 (140)
Q Consensus 56 ~~~~~C~w~gv~c~~~-----------~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~ 124 (140)
....+|.|.++ |+-. ...++.++++++.+. .+++..+..+++|++|++++|.+++..|. .++
T Consensus 25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~ 97 (353)
T 2z80_A 25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-----YISNSDLQRCVNLQALVLTSNGINTIEED-SFS 97 (353)
T ss_dssp --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECTT-TTT
T ss_pred ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCc-----ccCHHHhccCCCCCEEECCCCccCccCHh-hcC
Confidence 34567888877 5421 125777888887664 22333456666666666666666665555 466
Q ss_pred CCCCCCeeeeec
Q 032440 125 RLSRWSFITQTL 136 (140)
Q Consensus 125 ~l~~L~~L~L~~ 136 (140)
++++|++|+|+.
T Consensus 98 ~l~~L~~L~Ls~ 109 (353)
T 2z80_A 98 SLGSLEHLDLSY 109 (353)
T ss_dssp TCTTCCEEECCS
T ss_pred CCCCCCEEECCC
Confidence 666666666654
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.24 E-value=1.5e-06 Score=67.53 Aligned_cols=77 Identities=21% Similarity=0.185 Sum_probs=39.5
Q ss_pred CCCeeeee--eEEcCCC--------CCEEEEEcCCCCcccccc----------------c----ccCcccccCCcCCcEE
Q 032440 58 SDCCQWER--VECNNTT--------GRVIKLDLTQTRKWESAE----------------W----YMNASLFTPFQQLESL 107 (140)
Q Consensus 58 ~~~C~w~g--v~c~~~~--------~~v~~l~l~~~~l~~~g~----------------~----~~~~~~l~~l~~L~~L 107 (140)
...|.|.+ +.|.... .+++.++++++.+..+.. . .+++..|..+++|++|
T Consensus 5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L 84 (455)
T 3v47_A 5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84 (455)
T ss_dssp --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence 34566655 7776421 357788888876541100 0 1222334455555555
Q ss_pred EccCCccccccCchhhhCCCCCCeeeee
Q 032440 108 DLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 108 ~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
++++|.+++.+|. .++++++|++|+|+
T Consensus 85 ~Ls~n~l~~~~~~-~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 85 KLDYNQFLQLETG-AFNGLANLEVLTLT 111 (455)
T ss_dssp ECTTCTTCEECTT-TTTTCTTCCEEECT
T ss_pred eCCCCccCccChh-hccCcccCCEEeCC
Confidence 5555555555555 35555555555554
No 17
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.21 E-value=1.4e-06 Score=60.85 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=39.1
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..+++++|.+. .+++..+..+++|++|++++|++++.+|. .++.+++|++|+|+.+
T Consensus 79 ~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 79 HIQELQLGENKIK-----EISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASN 136 (192)
T ss_dssp TCCEEECCSCCCC-----EECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTC
T ss_pred cCCEEECCCCcCC-----ccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCC
Confidence 3555666666553 23344466777778888888888877777 5777777887777654
No 18
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.20 E-value=1.9e-06 Score=59.07 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=56.9
Q ss_pred CeeeeeeEEcCC---------CCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCC
Q 032440 60 CCQWERVECNNT---------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWS 130 (140)
Q Consensus 60 ~C~w~gv~c~~~---------~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~ 130 (140)
.|.|..+.|... ...+..+++++|.+. .+++..|..+++|++|+|++|++++-.|. .+..+++|+
T Consensus 8 ~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~-----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~f~~l~~L~ 81 (170)
T 3g39_A 8 SCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQIT-----KLEPGVFDRLTQLTRLDLDNNQLTVLPAG-VFDKLTQLT 81 (170)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCC
T ss_pred CcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCC-----ccChhhhcCcccCCEEECCCCCcCccChh-hccCCCCCC
Confidence 366777888641 135778999999876 34466789999999999999999976666 578999999
Q ss_pred eeeeece
Q 032440 131 FITQTLI 137 (140)
Q Consensus 131 ~L~L~~~ 137 (140)
+|+|+.+
T Consensus 82 ~L~L~~N 88 (170)
T 3g39_A 82 QLSLNDN 88 (170)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 9999865
No 19
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.17 E-value=2.4e-06 Score=58.93 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=20.1
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
|..+++|+.|+|++|++++-.|. .+..+++|++|+|+.
T Consensus 77 ~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDNHLKSIPRG-AFDNLKSLTHIYLYN 114 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCS
T ss_pred hCCcchhhEEECCCCccceeCHH-HhccccCCCEEEeCC
Confidence 44555555555555555543333 355555555555544
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.14 E-value=2.9e-06 Score=62.76 Aligned_cols=72 Identities=18% Similarity=0.409 Sum_probs=52.7
Q ss_pred CeeeeeeEEcCC---------CCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccc--cccCchhhhCCCC
Q 032440 60 CCQWERVECNNT---------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIA--GCVENEGLERLSR 128 (140)
Q Consensus 60 ~C~w~gv~c~~~---------~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~--G~iP~~~l~~l~~ 128 (140)
.|.|.++.|... ...++.++++++++. .+++..+..+++|+.|++++|.++ |.+|. .+..+++
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~ 79 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-SDFGTTS 79 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEH-HHHSCSC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC-----ccCHhHhhccccCCEEECCCCccCcccCccc-ccccccc
Confidence 478999999751 135888999998764 344555778888999999888887 44566 4777778
Q ss_pred CCeeeeece
Q 032440 129 WSFITQTLI 137 (140)
Q Consensus 129 L~~L~L~~~ 137 (140)
|++|+|+.+
T Consensus 80 L~~L~Ls~n 88 (306)
T 2z66_A 80 LKYLDLSFN 88 (306)
T ss_dssp CCEEECCSC
T ss_pred cCEEECCCC
Confidence 888877654
No 21
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.14 E-value=3.4e-06 Score=59.06 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=22.5
Q ss_pred ccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 96 ~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
..|..+++|+.|+|++|.+++-.|. .+..+++|++|+|+.
T Consensus 72 ~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 72 QSFSNMTQLLTLILSYNRLRCIPPR-TFDGLKSLRLLSLHG 111 (193)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECCS
T ss_pred hHccCCCCCCEEECCCCccCEeCHH-HhCCCCCCCEEECCC
Confidence 3355555666666666666555554 455555666655543
No 22
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.13 E-value=3.6e-06 Score=58.04 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=48.4
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..+++++|.+. .+++..|..+++|+.|+|++|++++-.|. .++++++|++|+|+.+
T Consensus 34 ~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 34 DKQRLWLNNNQIT-----KLEPGVFDHLVNLQQLYFNSNKLTAIPTG-VFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TCSEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred CCcEEEeCCCCcc-----ccCHHHhcCCcCCCEEECCCCCCCccChh-HhCCcchhhEEECCCC
Confidence 5778999999875 34466789999999999999999985555 5789999999999865
No 23
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.11 E-value=3.9e-06 Score=61.31 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
++.++++++.+. .+++..+..+++|++|++++|.++. +|+..+.++++|++|+|+.
T Consensus 39 l~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 39 TKKLDLQSNKLS-----SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp CSEEECCSSCCS-----CCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCS
T ss_pred CCEEECcCCCCC-----eeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCC
Confidence 455555555443 1223345556666666666666653 3331345566666665543
No 24
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.06 E-value=7.5e-06 Score=57.27 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=56.1
Q ss_pred CeeeeeeEEcCC---------CCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCC
Q 032440 60 CCQWERVECNNT---------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWS 130 (140)
Q Consensus 60 ~C~w~gv~c~~~---------~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~ 130 (140)
.|.+..+.|... ...++.++++++.+. .++ ..+..+++|+.|++++|.+++-.|. .+.++++|+
T Consensus 9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-----~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~ 81 (193)
T 2wfh_A 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-----LVP-KELSNYKHLTLIDLSNNRISTLSNQ-SFSNMTQLL 81 (193)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-----SCC-GGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCC
T ss_pred EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-----hhH-HHhhcccCCCEEECCCCcCCEeCHh-HccCCCCCC
Confidence 456777777531 125788999998774 233 4688999999999999999988777 699999999
Q ss_pred eeeeece
Q 032440 131 FITQTLI 137 (140)
Q Consensus 131 ~L~L~~~ 137 (140)
+|+|+.+
T Consensus 82 ~L~Ls~N 88 (193)
T 2wfh_A 82 TLILSYN 88 (193)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 9999865
No 25
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.06 E-value=6.1e-06 Score=58.78 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=25.4
Q ss_pred cccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..+..+++|+.|++++|++++..|. .+..+++|++|+|+.|
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECCSC
T ss_pred HhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEecCc
Confidence 34455566666666666666666666 4666666666666543
No 26
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.05 E-value=4.8e-06 Score=59.32 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=37.8
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..+++++|.+. .+++..+..+++|++|++++|.+++..|. .+..+++|++|+|+.+
T Consensus 83 L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 83 VNEILLTSNRLE-----NVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDN 139 (220)
T ss_dssp CCEEECCSSCCC-----CCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTS
T ss_pred CCEEECCCCccC-----ccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCC
Confidence 455555555443 23344466777777888888887777777 5777777887777654
No 27
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.03 E-value=7e-06 Score=58.45 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..+++++|.+. .+++..|..+++|+.|+|++|.+++..|. .+..+++|++|+|+.
T Consensus 81 ~L~~L~Ls~N~l~-----~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 81 SLNSLVLYGNKIT-----ELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYD 137 (220)
T ss_dssp SCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCC-----ccCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCC
Confidence 3445555555443 22333345555566666666666555555 455555566555554
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.02 E-value=6.8e-06 Score=61.60 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=58.3
Q ss_pred CeeeeeeEEcCC---------CCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCC
Q 032440 60 CCQWERVECNNT---------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWS 130 (140)
Q Consensus 60 ~C~w~gv~c~~~---------~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~ 130 (140)
.|.+..+.|... ...++.++++++.+. .+++..+..+++|++|++++|.+++..|. .++++++|+
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 105 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-----ELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQ 105 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCC
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCC-----ccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCC
Confidence 478999998641 125788999998765 34455689999999999999999998888 699999999
Q ss_pred eeeeece
Q 032440 131 FITQTLI 137 (140)
Q Consensus 131 ~L~L~~~ 137 (140)
+|+|+.+
T Consensus 106 ~L~L~~n 112 (332)
T 2ft3_A 106 KLYISKN 112 (332)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 9999764
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.00 E-value=1.1e-05 Score=60.22 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=58.6
Q ss_pred CCeeeeeeEEcCC---------CCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCC
Q 032440 59 DCCQWERVECNNT---------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRW 129 (140)
Q Consensus 59 ~~C~w~gv~c~~~---------~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L 129 (140)
..|.+..+.|... ...++.++++++.+. .+++..+..+++|++|++++|.+++..|. .++++++|
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L 102 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-----EIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKL 102 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC-----CBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCC-----EeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCC
Confidence 3567888888641 125778999998775 34455688999999999999999998898 69999999
Q ss_pred Ceeeeece
Q 032440 130 SFITQTLI 137 (140)
Q Consensus 130 ~~L~L~~~ 137 (140)
++|+|+.+
T Consensus 103 ~~L~Ls~n 110 (330)
T 1xku_A 103 ERLYLSKN 110 (330)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 99999764
No 30
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.99 E-value=8.4e-06 Score=55.76 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=20.7
Q ss_pred cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..+++|+.|++++|++++-.+. .+..+++|++|+|+.
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHT 133 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCS
T ss_pred HhhCCcccCEEECcCCcceEeCHH-HhcCCcccCEEEecC
Confidence 345555666666666666533332 345555666665544
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.99 E-value=5.6e-06 Score=66.29 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=39.2
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.++.++|++|.+. .+++..|.++++|++|||++|++++-.|. .|+++++|++|+|+.+
T Consensus 53 ~~~~LdLs~N~i~-----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~-~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 53 STKNLDLSFNPLR-----HLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGN 110 (635)
T ss_dssp TCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTC
T ss_pred CCCEEEeeCCCCC-----CCCHHHHhCCCCCCEEECCCCcCCCcChh-HhcCCCCCCEEEccCC
Confidence 5789999999875 23444566677777777777777665555 4666777777766543
No 32
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.98 E-value=1e-05 Score=57.94 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=30.9
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..+++++|.+. .+++..+..+++|+.|++++|.++ .||. .+..+++|++|+|+.+
T Consensus 89 ~L~~L~Ls~N~l~-----~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 89 QLTVLDLGTNQLT-----VLPSAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQN 145 (229)
T ss_dssp TCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSS
T ss_pred CcCEEECCCCcCC-----ccChhHhCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCC
Confidence 3455555555443 123333455666666666666665 5555 4566666666665543
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.93 E-value=4.4e-06 Score=62.44 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=24.1
Q ss_pred CEEEEEcCC-CCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 74 RVIKLDLTQ-TRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 74 ~v~~l~l~~-~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
.+..+++++ +++. +. + |..+..+++|++|++++|+++|.+|. .++++++|++|+|+
T Consensus 77 ~L~~L~L~~~n~l~--~~--~-p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 77 YLNFLYIGGINNLV--GP--I-PPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFS 133 (313)
T ss_dssp TCSEEEEEEETTEE--SC--C-CGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCCEEECC
T ss_pred CCCeeeCCCCCccc--cc--C-ChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCCCCEEeCC
Confidence 355666663 4442 21 1 22234444444444444444444444 24444444444443
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.91 E-value=1.6e-05 Score=63.89 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=23.9
Q ss_pred cccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..|.++++|++|++++|.+++..|. .++++++|++|+|+.
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVE 113 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEEECTT
T ss_pred HHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEEEccC
Confidence 33455566666666666666665555 466666666666543
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.91 E-value=1.1e-05 Score=64.55 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=33.5
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..++++++.+. .++|..|.++++|+.|+|++|++++-.|. .++.+++|++|+|+.
T Consensus 495 ~L~~L~Ls~N~L~-----~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~-~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 495 NLTFLDLSQCQLE-----QLSPTAFNSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSL 551 (635)
T ss_dssp TCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTSCCCBCCCG-GGTTCTTCCEEECTT
T ss_pred ccCEEECCCCccC-----CcChHHHcCCCCCCEEECCCCcCCCCChh-HHhCCCCCCEEECCC
Confidence 4556666666554 22344456666666666666666665555 466666666666654
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.88 E-value=1.7e-05 Score=59.73 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=15.4
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeee
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQ 134 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L 134 (140)
+..+++|+.|++++|++.|.+|. .++++++|+.+++
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l 308 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILV 308 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEEC
T ss_pred hhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeC
Confidence 33444444444444444444444 3444444444443
No 37
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.86 E-value=1.1e-05 Score=53.53 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=17.0
Q ss_pred CCcCCcEEEccCCcccc-ccCchhhhCCCCCCeeeee
Q 032440 100 PFQQLESLDLIGNNIAG-CVENEGLERLSRWSFITQT 135 (140)
Q Consensus 100 ~l~~L~~L~Ls~N~l~G-~iP~~~l~~l~~L~~L~L~ 135 (140)
.+++|+.|++++|.+++ +.|. .++.+++|++|+++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~-~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIE-PLKKLENLKSLDLF 121 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHG-GGGGCTTCCEEECT
T ss_pred hCCCCCEEECCCCcCCChHHHH-HHhhCCCCCEEeCc
Confidence 34555555555555554 2333 35555555555544
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.86 E-value=2.2e-05 Score=54.97 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=16.8
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
+..+++|+.|++++|.+++-.+. .+..+++|++|+|+
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLH 156 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECC
T ss_pred hccCCcCCEEECCCCccceeCHH-HhccCCCccEEEec
Confidence 34444444444444444433333 34444455554444
No 39
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.86 E-value=2e-05 Score=59.67 Aligned_cols=67 Identities=19% Similarity=0.391 Sum_probs=50.2
Q ss_pred eeeeeeEEcCC---------CCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCe
Q 032440 61 CQWERVECNNT---------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSF 131 (140)
Q Consensus 61 C~w~gv~c~~~---------~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~ 131 (140)
|.+..|.|... ...+++++|+++.+. .+++..|.++++|++|+|++|.+.+.||...+.++++++.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-----VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-----EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-----CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 67888999641 124788999998775 3556668899999999999999988888644666766654
Q ss_pred e
Q 032440 132 I 132 (140)
Q Consensus 132 L 132 (140)
+
T Consensus 84 ~ 84 (350)
T 4ay9_X 84 I 84 (350)
T ss_dssp E
T ss_pred h
Confidence 3
No 40
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.84 E-value=2.1e-05 Score=56.70 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=21.7
Q ss_pred cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..+++|++|++++|++++-.|. .++.+++|++|+|+.
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASLPLG-VFDHLTQLDKLYLGG 116 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred HhccCCcCCEEECCCCcccccChh-HhcccCCCCEEEcCC
Confidence 345555566666666665544444 455566666666554
No 41
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.83 E-value=2.4e-05 Score=56.42 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=21.6
Q ss_pred cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..+++|+.|++++|.+++..|. .+..+++|++|+|+.
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHG-AFDRLGKLQTITLFG 188 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCS
T ss_pred HcCcCcCCCEEECCCCcCCccCHH-HHhCCCCCCEEEeeC
Confidence 345555556666666665554444 355555666655544
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.80 E-value=1.5e-05 Score=65.10 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCCcccccc-c--c------------cCccccc--CCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 73 GRVIKLDLTQTRKWESAE-W--Y------------MNASLFT--PFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 73 ~~v~~l~l~~~~l~~~g~-~--~------------~~~~~l~--~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
..+..++++++.+. |. + . + |+.++ ++++|++|++++|++.|.+|. .++++++|++|+|+
T Consensus 206 ~~L~~L~Ls~n~l~--~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 206 TKLRQFYMGNSPFV--AENICEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVA 281 (636)
T ss_dssp TTCCEEEEESCCCC--GGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECT
T ss_pred cCCCEEECcCCccc--cccccccccccccchhcccC-chhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECc
Confidence 46788999998876 42 0 0 2 45577 899999999999999999999 69999999999988
Q ss_pred ce
Q 032440 136 LI 137 (140)
Q Consensus 136 ~~ 137 (140)
.+
T Consensus 282 ~n 283 (636)
T 4eco_A 282 CN 283 (636)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 43
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.79 E-value=1.8e-05 Score=53.51 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=17.8
Q ss_pred cCCcCCcEEEccCCccccc-cCchhhhCCCCCCeeeeec
Q 032440 99 TPFQQLESLDLIGNNIAGC-VENEGLERLSRWSFITQTL 136 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~G~-iP~~~l~~l~~L~~L~L~~ 136 (140)
..+++|+.|++++|.+++- .+. .++.+++|++|+++.
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~-~l~~l~~L~~L~l~~ 129 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLE-PLKKLECLKSLDLFN 129 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGG-GGSSCSCCCEEECCS
T ss_pred hhCCCCCEEeccCCccCcchhHH-HHhcCCCCCEEEeeC
Confidence 3355555555555555442 113 355555555555543
No 44
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.77 E-value=3.6e-05 Score=58.53 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=18.3
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
|..+++|+.|+|++|++++-.|. .+..+++|++|+|+
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLDEF-LFSDLQALEVLLLY 120 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECC
T ss_pred ccCCCCCCEEECCCCcCCcCCHH-HhCCCcCCCEEECC
Confidence 44445555555555555444333 34555555555554
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.76 E-value=3.3e-05 Score=60.29 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=39.4
Q ss_pred eeeeEEcCC---------CCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeee
Q 032440 63 WERVECNNT---------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFIT 133 (140)
Q Consensus 63 w~gv~c~~~---------~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~ 133 (140)
+..+.|... ...++.++++++++. .+.+..|..+++|+.|++++|.+++-.|. .+.++++|++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~ 129 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQ-----MIQADTFRHLHHLEVLQLGRNSIRQIEVG-AFNGLASLNTLE 129 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEE
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCc-----eECHHHcCCCCCCCEEECCCCccCCcChh-hccCcccCCEEE
Confidence 456777531 125777888887764 12334455566666666666666655555 455556666655
Q ss_pred eec
Q 032440 134 QTL 136 (140)
Q Consensus 134 L~~ 136 (140)
|+.
T Consensus 130 L~~ 132 (452)
T 3zyi_A 130 LFD 132 (452)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 46
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.76 E-value=2.1e-05 Score=54.77 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=41.3
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..++++++.+. +. .+..+..+++|++|++++|.+++.+|. .++.+++|++|+|+.+
T Consensus 89 ~L~~L~l~~n~l~--~~---~~~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 89 NLERLRIMGKDVT--SD---KIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYN 146 (197)
T ss_dssp TCCEEEEECTTCB--GG---GSCCCTTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSC
T ss_pred CCCEEEeECCccC--cc---cChhhcCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCC
Confidence 4666777776654 21 133467788888888888888887777 5888888888888765
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.74 E-value=1.7e-05 Score=62.75 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=37.4
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+++.++++++.+. .+++..+..+++|++|++++|++++..|. .++++++|++|+|+.+
T Consensus 22 ~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 22 KTTILNISQNYIS-----ELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHN 79 (520)
T ss_dssp TCSEEECCSSCCC-----CCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSS
T ss_pred cccEEECCCCccc-----ccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCCC
Confidence 4666777776654 22344466677777777777777766666 4777777777776643
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.74 E-value=3.1e-05 Score=62.00 Aligned_cols=58 Identities=16% Similarity=0.057 Sum_probs=38.7
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.++.++++++.+. .+++..+..+++|++|++++|.+++-.|. .++++++|++|+|+.+
T Consensus 53 ~L~~L~Ls~N~i~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 53 RTKALSLSQNSIS-----ELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYLDVSHN 110 (562)
T ss_dssp TCCEEECCSSCCC-----CCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEECTTS
T ss_pred CcCEEECCCCCcc-----ccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEEECCCC
Confidence 4667777777654 23344567777777777777777776666 5777777777776643
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.74 E-value=3.4e-05 Score=61.21 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=47.9
Q ss_pred eeeeEEcCCCCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhh-CCCCCCeeeeece
Q 032440 63 WERVECNNTTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLE-RLSRWSFITQTLI 137 (140)
Q Consensus 63 w~gv~c~~~~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~-~l~~L~~L~L~~~ 137 (140)
..++.|.. -..+..++++++.+. + +.+..++.+++|+.|++++|.++|.+|. .+. ++++|++|+|+.+
T Consensus 111 l~~~~~~~-l~~L~~L~L~~N~l~--~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 111 ISRVSCSR-GQGKKNIYLANNKIT--M---LRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CCCEEECC-CSSCEEEECCSSCCC--S---GGGBCGGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTS
T ss_pred CCCCCccc-cCCCCEEECCCCCCC--C---CCchhhcCCCCCCEEECCCCCCCCcChH-HHhhhCCcccEEecCCC
Confidence 34444433 245677777777765 2 2244577888999999999999998888 576 7888888888754
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.72 E-value=4.6e-05 Score=55.66 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=23.6
Q ss_pred cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..+++|+.|++++|.+++..|. .++++++|++|+|+.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHD 214 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCS
T ss_pred HhcCCccCCEEECCCCcCCccCHH-HHhCCcCCCEEEccC
Confidence 345566666666666666665555 456666666666654
No 51
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.69 E-value=5.5e-05 Score=55.23 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=19.0
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..+++|++|++++|.+++..|. .++++++|++|+|+.
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTELDLSY 166 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred hccCCCCCEEECCCCccCccCHH-HhccCccCCEEECCC
Confidence 44455555555555555544443 345555555555543
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.68 E-value=3.7e-05 Score=61.80 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=28.8
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
.++.++++++.+. .+.+..|..+++|++|++++|.+++..|. .++++++|++|+|+
T Consensus 34 ~l~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 34 STECLEFSFNVLP-----TIQNTTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLT 89 (606)
T ss_dssp TCCEEECTTCCCS-----EECTTTSTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECT
T ss_pred cCcEEEccCCccC-----cCChhHhccCccceEEECCCCccceeChh-hccCccccCeeeCC
Confidence 4667777777654 12233344555555555555555544444 35555555555544
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.68 E-value=4.6e-05 Score=55.76 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=20.7
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..+++|+.|++++|.+++.+|. .++++++|++|+|+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFA 210 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCS
T ss_pred hcCccccCEEECCCCcccccCHh-HccCcccccEeeCCC
Confidence 44555555555555555555555 355555555555543
No 54
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.68 E-value=4.3e-05 Score=58.10 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=36.1
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..+++++|.+. .+++..|..+++|+.|+|++|.+++-.|. .+..+++|++|+|+.+
T Consensus 89 ~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 89 NLRYLDLSSNHLH-----TLDEFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQN 146 (361)
T ss_dssp TCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCcCC-----cCCHHHhCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCC
Confidence 4556666666553 23344466677777777777777766666 4666777777766543
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.68 E-value=3.7e-05 Score=61.80 Aligned_cols=57 Identities=21% Similarity=0.206 Sum_probs=31.4
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+++.++++++.+. .+++..|.++++|++|++++|.+++-.|. .++++++|++|+|+.
T Consensus 33 ~l~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 33 STKNIDLSFNPLK-----ILKSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTG 89 (606)
T ss_dssp TCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTT
T ss_pred CcCEEECCCCCcC-----EeChhhccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeECCC
Confidence 4555666665543 12233455566666666666666655555 455666666666554
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.66 E-value=2.9e-05 Score=65.35 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=30.7
Q ss_pred cCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 93 MNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 93 ~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+++..|.++++|++|+|++|.+++..|. .++++++|++|+|+.+
T Consensus 64 i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 64 IDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFHLFELRLYFC 107 (844)
T ss_dssp ECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSSCCCEECTTC
T ss_pred cCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcccCEeeCcCC
Confidence 3345567777777777777777777777 5777777777777643
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.65 E-value=4.7e-05 Score=59.01 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=47.6
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCch-hhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENE-GLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~-~l~~l~~L~~L~L~~~ 137 (140)
.++.++++++.+. .+.+..+..+++|++|++++|+++|.+|.. .++++++|++|+|+.+
T Consensus 80 ~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 80 SLIILKLDYNQFL-----QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp TCCEEECTTCTTC-----EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred cCCEEeCCCCccC-----ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC
Confidence 5777888877664 234566899999999999999999987761 3889999999999864
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.65 E-value=5e-05 Score=55.56 Aligned_cols=57 Identities=18% Similarity=0.078 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.++.++++++.+. .+++..+..+++|++|++++|.+++..|. .++.+++|++|+|+.
T Consensus 33 ~l~~L~l~~n~i~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 33 ASQRIFLHGNRIS-----HVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSD 89 (285)
T ss_dssp TCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCS
T ss_pred CceEEEeeCCcCC-----ccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCC
Confidence 3555555555543 12233344455555555555555544444 355555555555443
No 59
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.64 E-value=1.7e-05 Score=52.68 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=30.8
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..++++++.+. + + ..+..+++|++|++++|.+++.+|. .++.+++|++|+++.
T Consensus 43 ~L~~L~l~~n~l~--~---~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 43 ELEFLSTINVGLT--S---I--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHLNLSG 97 (149)
T ss_dssp TCCEEECTTSCCC--C---C--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEEECTT
T ss_pred CCcEEECcCCCCC--C---c--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEEECCC
Confidence 3555666665543 1 1 2345566666666666666666555 455566666666554
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.64 E-value=3.6e-05 Score=61.07 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=18.6
Q ss_pred ccCCcCCcEEEccCCcccc-ccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAG-CVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G-~iP~~~l~~l~~L~~L~L~~ 136 (140)
++.+++|++|++++|.+++ .+|. .++++++|++|+++.
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGN 132 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEE
T ss_pred hccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCC
Confidence 4445555555555555544 3444 355555555555543
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.63 E-value=0.00012 Score=52.26 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=29.8
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCc-cccccCchhhhCCCCCCeeeee
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNN-IAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~-l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
.++.++++++.+. .+++..+..+++|++|++++|. +++-.|. .++++++|++|+|+
T Consensus 32 ~l~~L~l~~n~l~-----~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~ 88 (239)
T 2xwt_C 32 STQTLKLIETHLR-----TIPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIR 88 (239)
T ss_dssp TCCEEEEESCCCS-----EECTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEE
T ss_pred cccEEEEeCCcce-----EECHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECC
Confidence 4666777776654 2233345555566666666654 4433333 35555555555554
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.62 E-value=6e-05 Score=54.87 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=25.4
Q ss_pred cccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..+..+++|++|++++|.+++..|. .++++++|++|+++.
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 69 DGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVE 109 (276)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTT
T ss_pred HHHccCCcCCCEEECCCCccCccChh-hhcCCccccEEECCC
Confidence 33455666666666666666666555 466666666666643
No 63
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.61 E-value=5.3e-05 Score=56.96 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=45.9
Q ss_pred CCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 73 ~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
..+..++|++|.+. + +++..|..+++|+.|+|++|+|++-.|. .+..++ |++|+|.-|
T Consensus 56 ~~L~~L~l~~N~l~--~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 56 GELRNLTIVKSGLR--F---VAPDAFHFTPRLSRLNLSFNALESLSWK-TVQGLS-LQELVLSGN 113 (347)
T ss_dssp CCCSEEECCSSCCC--E---ECTTGGGSCSCCCEEECCSSCCSCCCST-TTCSCC-CCEEECCSS
T ss_pred cCCCEEECCCCccc--e---eCHHHhcCCcCCCEEeCCCCccceeCHH-HcccCC-ceEEEeeCC
Confidence 45888999999886 3 4566789999999999999999965444 455555 999998765
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.61 E-value=5.3e-05 Score=59.25 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=34.4
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.++.++++++++. .+.+..|..+++|++|+|++|.+++..|. .++++++|++|+|+.
T Consensus 33 ~l~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 33 ETRLLDLGKNRIK-----TLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRS 89 (477)
T ss_dssp TCSEEECCSSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCS
T ss_pred CCcEEECCCCccc-----eECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCC
Confidence 4566777777654 22344456666666666666666666565 466666666666653
No 65
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.59 E-value=4.7e-05 Score=64.79 Aligned_cols=61 Identities=8% Similarity=0.038 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCCcccccc-c--------------ccCccccc--CCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 73 GRVIKLDLTQTRKWESAE-W--------------YMNASLFT--PFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 73 ~~v~~l~l~~~~l~~~g~-~--------------~~~~~~l~--~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
..+..++++++.+. |. + .+ |+.++ ++++|+.|+|++|++.|.+|. .++++++|++|+|+
T Consensus 448 ~~L~~L~Ls~N~Ls--g~~i~~~~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 448 TKLQIIYFANSPFT--YDNIAVDWEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIA 523 (876)
T ss_dssp TTCCEEEEESCCCC--GGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECT
T ss_pred CCCCEEECcCCcCC--CCcccccccccccccccccC-ChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECc
Confidence 46888999999876 41 0 03 44566 999999999999999999999 69999999999998
Q ss_pred ce
Q 032440 136 LI 137 (140)
Q Consensus 136 ~~ 137 (140)
.+
T Consensus 524 ~N 525 (876)
T 4ecn_A 524 CN 525 (876)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.59 E-value=6.5e-05 Score=61.22 Aligned_cols=57 Identities=25% Similarity=0.254 Sum_probs=33.0
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+++.++++++.+. .+++..|..+++|++|++++|.+++..|. .++++++|++|+|+.
T Consensus 26 ~l~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 26 NITVLNLTHNQLR-----RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQH 82 (680)
T ss_dssp TCSEEECCSSCCC-----CCCGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCS
T ss_pred CCcEEECCCCCCC-----CcCHHHHhCCCcCcEEECCCCccCccCHH-HHhcccCcCEEECCC
Confidence 5677777777654 22333455566666666666666665555 455566666655543
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.58 E-value=8.7e-05 Score=54.90 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=14.2
Q ss_pred cCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 99 TPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
..+++|+.|++++|++++-.+. .+..+++|++|+|+
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELPAG-LLNGLENLDTLLLQ 180 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCCTT-TTTTCTTCCEEECC
T ss_pred ccccCCCEEECCCCcCCccCHH-HhcCcCCCCEEECC
Confidence 3344444444444444422212 23344444444443
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.58 E-value=9.9e-05 Score=53.72 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=16.5
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
+..+++|++|++++|.+++-.+. .++.+++|++|+|+
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKG-VFDKLTSLKELRLY 165 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred hCcCcCCCEEECCCCcCCccCHh-HccCCcccceeEec
Confidence 34444444444444444433332 24444455554443
No 69
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.57 E-value=5.8e-05 Score=60.62 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=38.0
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.++.++++++.+. .+.|..|..+++|++|++++|++++..|. .++++++|++|+|+.
T Consensus 58 ~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~ 114 (606)
T 3t6q_A 58 NLTFLDLTRCQIY-----WIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFIQ 114 (606)
T ss_dssp TCSEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECTT
T ss_pred cceEEECCCCccc-----eeChhhccCccccCeeeCCCCcccccChh-hhcccccccEeeccc
Confidence 4667777777654 23345567777777777777777777676 577777777777654
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.56 E-value=7.5e-05 Score=54.35 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=33.4
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..++++++.+. .+++..+..+++|++|++++|++++..+. .++++++|++|+++.
T Consensus 77 ~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 77 HLSTLILTGNPIQ-----SLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAH 133 (276)
T ss_dssp TCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECCS
T ss_pred CCCEEECCCCccC-----ccChhhhcCCccccEEECCCCCccccCch-hcccCCCCCEEECcC
Confidence 3445555555443 12234456666777777777777665555 466667777776654
No 71
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.55 E-value=7.5e-05 Score=60.51 Aligned_cols=56 Identities=13% Similarity=0.040 Sum_probs=41.1
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCcccccc-CchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCV-ENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~i-P~~~l~~l~~L~~L~L~~~ 137 (140)
.+..+++++|.+. + + | .++.+++|+.|+|++|.+++.+ |. .++.+++|++|+|+.|
T Consensus 487 ~L~~L~Ls~N~l~--~---l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 487 CLEVLQASDNALE--N---V-D-GVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGN 543 (567)
T ss_dssp TCCEEECCSSCCC--C---C-G-GGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTS
T ss_pred CCCEEECCCCCCC--C---C-c-ccCCCCCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCC
Confidence 3555666666554 2 2 3 4778888888888888888887 88 5888888888888765
No 72
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.54 E-value=0.0001 Score=54.38 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=18.0
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCC-CCCCeeeee
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERL-SRWSFITQT 135 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l-~~L~~L~L~ 135 (140)
+..+++|+.|++++|.+++.+|. .+..+ ++|++|+|+
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLT 256 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSSS-SCCCCCTTCCEEECT
T ss_pred ccCcccCCEeECCCCCCcccCHH-HHHhhhccCCEEEcc
Confidence 34444555555555555555554 34444 245555544
No 73
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.54 E-value=7.3e-05 Score=51.05 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=18.3
Q ss_pred cCCcCCcEEEccCCccccccCc-hhhhCCCCCCeeeeec
Q 032440 99 TPFQQLESLDLIGNNIAGCVEN-EGLERLSRWSFITQTL 136 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~G~iP~-~~l~~l~~L~~L~L~~ 136 (140)
..+++|+.|++++|.+ +.+|. +.++.+++|++|+++.
T Consensus 85 ~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 85 QALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp HHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCS
T ss_pred hcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecC
Confidence 4455555555555555 23333 1245555555555543
No 74
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.54 E-value=5.1e-05 Score=51.86 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=16.9
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
+..+++|++|++++|.+++-.|. .++.+++|++|+|+
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRIGEG-LDQALPDLTELILT 96 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEECSC-HHHHCTTCCEEECC
T ss_pred cccCCCCCEEECCCCcccccCcc-hhhcCCCCCEEECC
Confidence 44445555555555555432222 22445555555544
No 75
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.51 E-value=8.8e-05 Score=62.39 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=23.6
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..+++|+.||+++|.+++..|++.++++++|++|+|+.+
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 5556666666666666666544214666666666666543
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.50 E-value=0.00011 Score=59.37 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=37.0
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..++++++.+. .+++..|..+++|++|++++|.+++..|. .++++++|++|+|+.+
T Consensus 125 L~~L~L~~n~l~-----~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 125 LTVLVLERNDLS-----SLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSN 181 (597)
T ss_dssp CCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTS
T ss_pred CCEEEeeCCCCC-----CCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCC
Confidence 445555555443 23344456777777777777777777776 5777777777777643
No 77
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.50 E-value=9.7e-05 Score=58.68 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
++.++++++.+. .+++..|..+++|++|++++|.+++..|. .++++++|++|+++.
T Consensus 54 L~~L~Ls~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 54 LQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVE 109 (570)
T ss_dssp CCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTT
T ss_pred ceEEECCCCcCC-----ccCcccccCchhCCEEeCcCCcCCccCHh-hhcCccccccccccc
Confidence 445555555433 22344466667777777777776666656 466777777776654
No 78
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.50 E-value=4e-05 Score=63.77 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=23.9
Q ss_pred cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.++.+++|+.|+|++|.|+ .||. .++++++|++|+|+.+
T Consensus 265 ~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 265 EIKNLSNLRVLDLSHNRLT-SLPA-ELGSCFQLKYFYFFDN 303 (727)
T ss_dssp GGGGGTTCCEEECTTSCCS-SCCS-SGGGGTTCSEEECCSS
T ss_pred hhhCCCCCCEEeCcCCcCC-ccCh-hhcCCCCCCEEECCCC
Confidence 3556666666666666666 6666 4666666666666543
No 79
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.49 E-value=0.00011 Score=57.28 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=31.5
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..++++++.+. .+.+..|..+++|++|+|++|++++-.|. .++.+++|++|+|+.
T Consensus 100 ~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 100 HLEVLQLGRNSIR-----QIEVGAFNGLASLNTLELFDNWLTVIPSG-AFEYLSKLRELWLRN 156 (452)
T ss_dssp TCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCSBCCTT-TSSSCTTCCEEECCS
T ss_pred CCCEEECCCCccC-----CcChhhccCcccCCEEECCCCcCCccChh-hhcccCCCCEEECCC
Confidence 4666777776553 12233455566666666666666544444 355555566555543
No 80
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.48 E-value=0.00011 Score=55.96 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=20.7
Q ss_pred cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
.+..+++|++|++++|.+++..|. .++++++|++|+|+
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLE 125 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred hccCCCCcCEEECCCCCCCcCCHH-HhcCCCCCCEEECC
Confidence 345555555555555555554444 35555555555554
No 81
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.47 E-value=0.00014 Score=56.80 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..++++++.+. .+++..|..+++|++|++++|.+++.+|. .+.++++|++|+|+.
T Consensus 82 L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~ 137 (477)
T 2id5_A 82 LRTLGLRSNRLK-----LIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGD 137 (477)
T ss_dssp CCEEECCSSCCC-----SCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECC
T ss_pred CCEEECCCCcCC-----ccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCC
Confidence 445555555442 22333455566666666666666666665 466666666666543
No 82
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.46 E-value=9.2e-05 Score=61.61 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=45.1
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..++|++|.+. .+ |..++.+++|++|+|++|.++ .||. .|+++++|++|+|+.|
T Consensus 271 ~L~~L~Ls~N~l~-----~l-p~~~~~l~~L~~L~L~~N~l~-~lp~-~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 271 NLRVLDLSHNRLT-----SL-PAELGSCFQLKYFYFFDNMVT-TLPW-EFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TCCEEECTTSCCS-----SC-CSSGGGGTTCSEEECCSSCCC-CCCS-STTSCTTCCCEECTTS
T ss_pred CCCEEeCcCCcCC-----cc-ChhhcCCCCCCEEECCCCCCC-ccCh-hhhcCCCccEEeCCCC
Confidence 3556666666553 23 455889999999999999996 8999 6999999999999865
No 83
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.46 E-value=0.0001 Score=59.70 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=44.4
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..+++++|.+. .+ |..++.+++|+.|+|++|.+++ ||. ++++++|++|+|+.+
T Consensus 464 ~L~~L~Ls~N~l~-----~l-p~~~~~l~~L~~L~Ls~N~l~~-lp~--l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 464 LVTHLDLSHNRLR-----AL-PPALAALRCLEVLQASDNALEN-VDG--VANLPRLQELLLCNN 518 (567)
T ss_dssp TCCEEECCSSCCC-----CC-CGGGGGCTTCCEEECCSSCCCC-CGG--GTTCSSCCEEECCSS
T ss_pred cCcEeecCccccc-----cc-chhhhcCCCCCEEECCCCCCCC-Ccc--cCCCCCCcEEECCCC
Confidence 5788888888764 23 3458889999999999999998 773 899999999998765
No 84
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.45 E-value=0.00011 Score=57.06 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=16.0
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
|..+++|+.|++++|.+++..|. .+.++++|++|+|+
T Consensus 227 ~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLVEINLA 263 (440)
T ss_dssp TTTCTTCCEEECTTCCCCEECTT-SSTTCTTCCEEECT
T ss_pred hccCccCCEEECCCCceeEEChh-hhcCCCCCCEEECC
Confidence 34444444444444444444443 34444444444443
No 85
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.45 E-value=0.00012 Score=59.19 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=22.6
Q ss_pred cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.|..+++|++|+|++|.+++..|. .++++++|++|+|+.
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLER 132 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred HhcCCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEeeC
Confidence 455566666666666666665555 455666666665543
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.44 E-value=7.5e-05 Score=55.56 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=33.8
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccc--cCchhh--hCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGC--VENEGL--ERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~--iP~~~l--~~l~~L~~L~L~~~ 137 (140)
.+..++++++.+. .+++..+..+++|++|++++|.+.|. +|. .+ +++++|++|+|+.+
T Consensus 150 ~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 150 GLKVLSIAQAHSL-----NFSCEQVRVFPALSTLDLSDNPELGERGLIS-ALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp TCCEEEEESCSCC-----CCCTTTCCCCSSCCEEECCSCTTCHHHHHHH-HSCTTSCTTCCEEECTTS
T ss_pred CCcEEEeeCCCCc-----cchHHHhccCCCCCEEECCCCCcCcchHHHH-HHHhccCCCCCEEECCCC
Confidence 4555666665543 23344566677777777777776665 333 23 56666777666543
No 87
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.44 E-value=0.00013 Score=54.46 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=17.7
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
+..+++|+.|++++|.++ .+|. .+..+++|++|+|+
T Consensus 236 ~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLV-KVPG-GLADHKYIQVVYLH 271 (330)
T ss_dssp GGGSTTCCEEECCSSCCS-SCCT-TTTTCSSCCEEECC
T ss_pred ccCCCCCCEEECCCCcCc-cCCh-hhccCCCcCEEECC
Confidence 444445555555555544 4444 34455555555544
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.44 E-value=9.5e-05 Score=58.62 Aligned_cols=56 Identities=29% Similarity=0.335 Sum_probs=44.3
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+++.++++++.+. .+++..+..+++|++|+|++|.++|.+| ++.+++|++|+|+.+
T Consensus 35 ~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 35 NVKELDLSGNPLS-----QISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNN 90 (487)
T ss_dssp GCCEEECCSSCCC-----CCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSS
T ss_pred CccEEEeeCCcCC-----CCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCC
Confidence 5888899988775 2445568889999999999999988664 678888888888754
No 89
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.44 E-value=0.00011 Score=55.48 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=31.3
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..++++++.+. .+.+..+..+++|++|++++|.+++ +|++.++++++|++|+|+.
T Consensus 77 ~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 77 NLQALVLTSNGIN-----TIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLG 133 (353)
T ss_dssp TCCEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTT
T ss_pred CCCEEECCCCccC-----ccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCC
Confidence 4666777766553 1223345556666666666666654 3331355566666666554
No 90
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.43 E-value=0.00019 Score=54.78 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=37.1
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..++++++.+. .+++..+..+++|++|++++|.+++..|. .++.+++|++|+++.+
T Consensus 118 ~L~~L~L~~n~l~-----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 118 LLTVLVLERNDLS-----SLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSN 175 (390)
T ss_dssp TCCEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSS
T ss_pred CCCEEECCCCccC-----cCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCC
Confidence 3555556555443 23344456777777777777777776666 5777777777777643
No 91
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.43 E-value=0.00015 Score=48.98 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=43.5
Q ss_pred CEEEEEcCCCCcccccccccC-cccccCCcCCcEEEccCCccccccC---chhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMN-ASLFTPFQQLESLDLIGNNIAGCVE---NEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~-~~~l~~l~~L~~L~Ls~N~l~G~iP---~~~l~~l~~L~~L~L~~~ 137 (140)
.+..++++++.+. .++ ...+..++.|+.|++++|.+++..+ . .+..+++|++|+++.+
T Consensus 96 ~L~~L~Ls~N~l~-----~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 96 NLTHLNLSGNKLK-----DISTLEPLKKLECLKSLDLFNCEVTNLNDYRES-VFKLLPQLTYLDGYDR 157 (168)
T ss_dssp TCCEEECBSSSCC-----SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHH-HHTTCSSCCEETTEET
T ss_pred CCCEEeccCCccC-----cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHH-HHHhCccCcEecCCCC
Confidence 3555666666553 121 1457889999999999999998776 4 5889999999998754
No 92
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.42 E-value=9.1e-05 Score=55.38 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=29.7
Q ss_pred cccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..+..+++|+.|++++|.++ .+|. .++.+++|++|+++.+
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLS-RVPA-GLPDLKLLQVVYLHTN 274 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-BCCT-TGGGCTTCCEEECCSS
T ss_pred hhHhhCCCCCCEEECCCCcCe-ecCh-hhhcCccCCEEECCCC
Confidence 334667777888888888777 7777 5777778887777643
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.42 E-value=0.00011 Score=52.37 Aligned_cols=58 Identities=9% Similarity=0.147 Sum_probs=37.6
Q ss_pred CEEEEEcCCCC-cccccccccCcccccCCcCCcEEEccC-CccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTR-KWESAEWYMNASLFTPFQQLESLDLIG-NNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~-l~~~g~~~~~~~~l~~l~~L~~L~Ls~-N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
++..++++++. +. .+++..|..+++|++|++++ |.+++-.|. .+.++++|++|+++.+
T Consensus 56 ~L~~L~l~~n~~l~-----~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 56 NISRIYVSIDVTLQ-----QLESHSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELPLLKFLGIFNT 115 (239)
T ss_dssp TCCEEEEECCSSCC-----EECTTTEESCTTCCEEEEEEETTCCEECTT-SEECCTTCCEEEEEEE
T ss_pred CCcEEeCCCCCCcc-----eeCHhHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCCCCCEEeCCCC
Confidence 46677777775 43 23344566777777777777 777755445 4677777777777654
No 94
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.42 E-value=0.00014 Score=56.53 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=18.4
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
|.++++|++|+|++|++++-.+. .+..+++|++|+|+.
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~ 145 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNG-AFVYLSKLKELWLRN 145 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTT-TSCSCSSCCEEECCS
T ss_pred ccCCccCCEEECCCCcCCeeCHh-HhhccccCceeeCCC
Confidence 44455555555555555533333 345555555555543
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.41 E-value=0.00013 Score=50.74 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=45.6
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..++++++... . .+.+..++.|++|++++|.+++..|. .++.+++|++|+|+.+
T Consensus 67 ~L~~L~l~~n~~~-----~--~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 67 NIKDLTINNIHAT-----N--YNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHS 122 (197)
T ss_dssp TCSEEEEESCCCS-----C--CGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCEEECCSS
T ss_pred CCCEEEccCCCCC-----c--chhhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCEEEecCC
Confidence 4677777777443 1 22478899999999999999998888 6999999999999864
No 96
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.41 E-value=0.00022 Score=52.68 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..++++++.+. .+++..|..+++|+.|++++|++++-.|. .+..+++|++|+|+.
T Consensus 101 ~L~~L~l~~N~l~-----~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 101 ALTVLDVSFNRLT-----SLPLGALRGLGELQELYLKGNELKTLPPG-LLTPTPKLEKLSLAN 157 (290)
T ss_dssp TCCEEECCSSCCC-----CCCSSTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTT
T ss_pred CCCEEECCCCcCc-----ccCHHHHcCCCCCCEEECCCCCCCccChh-hcccccCCCEEECCC
Confidence 3455555555543 22333455555666666666665544433 355555566555543
No 97
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.39 E-value=0.00016 Score=57.43 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=29.7
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
.+..++++++.+. .+++..|..+++|++|++++|++++-.+. .++++++|++|+++.
T Consensus 77 ~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~ 133 (570)
T 2z63_A 77 HLSTLILTGNPIQ-----SLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAH 133 (570)
T ss_dssp TCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTSCCCCSTTC-SCTTCTTCCEEECCS
T ss_pred hCCEEeCcCCcCC-----ccCHhhhcCccccccccccccccccCCCc-cccccccccEEecCC
Confidence 3455555555443 12233455556666666666655554443 355556666665543
No 98
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.38 E-value=0.0002 Score=58.30 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=24.4
Q ss_pred cccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..+..+++|++|++++|.+++..|. .++++++|++|+++.
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSN 154 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCS
T ss_pred hhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccC
Confidence 33455566666666666666666555 466666666666554
No 99
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.37 E-value=0.00018 Score=56.71 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=40.8
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCcccc-ccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAG-CVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G-~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..++++++.+. .++.. .+++|++|++++|.+++ ++|. .++++++|++|+++.+
T Consensus 70 ~L~~L~Ls~N~l~-----~lp~~---~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 70 ELEYLDLSHNKLV-----KISCH---PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTT 125 (520)
T ss_dssp TCCEEECCSSCCC-----EEECC---CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEES
T ss_pred CCCEEecCCCcee-----ecCcc---ccCCccEEeccCCccccccchh-hhccCCcceEEEecCc
Confidence 4666666666553 22222 68888999999999888 6888 6999999999998764
No 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.26 E-value=0.00025 Score=56.73 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=27.3
Q ss_pred CCcCCcEEEccCCcccc-ccCchhhhCCCCCCeeeeece
Q 032440 100 PFQQLESLDLIGNNIAG-CVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 100 ~l~~L~~L~Ls~N~l~G-~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+++|++|++++|++++ ++|. .++++++|++|+|+.+
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECS
T ss_pred ccccCCEEECCCCCccccCchH-hhcccCcccEEecCCC
Confidence 56777777777777776 5667 5888888888887754
No 101
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.25 E-value=0.00014 Score=54.08 Aligned_cols=57 Identities=9% Similarity=0.015 Sum_probs=37.4
Q ss_pred CEEEEEcCCCCcccccccccCcccccCC-----cCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPF-----QQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l-----~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.++.++++++.+. + + |..+..+ ++|++|++++|++++..|. .++++++|++|+|+.+
T Consensus 122 ~L~~L~Ls~N~l~--~---~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 122 DLNILNLRNVSWA--T---R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDN 183 (312)
T ss_dssp CCSEEEEESCBCS--S---S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCSC
T ss_pred CccEEEccCCCCc--c---h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEEECCCC
Confidence 4566666666554 2 2 2334444 7777777777777776667 5778888888887754
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.21 E-value=0.00023 Score=52.95 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=36.6
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..++++++.+. .+++. +..+++|+.|++++|.++ .+|. .+..+++|++|+|+.+
T Consensus 192 ~L~~L~Ls~N~l~-----~l~~~-~~~l~~L~~L~L~~N~l~-~l~~-~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 192 KLKTLDLSSNKLA-----FMGPE-FQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TCCEEECCSSCCC-----EECGG-GGGGTTCSEEECTTSCCC-EECT-TCCCCTTCCEEECTTC
T ss_pred cCCEEECCCCcCC-----cchhh-hcccCcccEEECcCCccc-chhh-HhhcCCCCCEEEccCC
Confidence 3455555555543 12232 667778888888888877 4777 5777888888877654
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.19 E-value=0.00021 Score=52.99 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=34.7
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccc--cCch-hhhCCCCCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGC--VENE-GLERLSRWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~--iP~~-~l~~l~~L~~L~L~~ 136 (140)
++..++++++.+. .+++..+..+++|++||+++|++.|. +|.. .++++++|++|+|+.
T Consensus 146 ~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 146 GLKVLSIAQAHSP-----AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp CCCEEEEECCSSC-----CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred CCCEEEeeCCCcc-----hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 4666677776653 23344566777777777777777653 3221 235666677766654
No 104
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.14 E-value=0.00054 Score=50.95 Aligned_cols=57 Identities=12% Similarity=-0.027 Sum_probs=37.4
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhh-CCCCCCeeeeece
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLE-RLSRWSFITQTLI 137 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~-~l~~L~~L~L~~~ 137 (140)
+..++++++.+. .+.+..+..++.|+.|++++|.+++..|. .+. .+++|++|+|+.+
T Consensus 122 L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 122 KKNIYLANNKIT-----MLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CEEEECCSSCCC-----SGGGBCTGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTS
T ss_pred CCEEECCCCCCC-----CccchhhhccCCCCEEECCCCCCCcccHH-HHhhccCcCCEEECCCC
Confidence 455566665543 12233466778888888888888887776 453 6777888777654
No 105
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.97 E-value=0.0005 Score=50.80 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCC--CCCeeeeec
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLS--RWSFITQTL 136 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~--~L~~L~L~~ 136 (140)
.+..++|++|.+..+..+ +..+..+++|+.|+|++|.+++. . .+..+. +|++|+|+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l---~~~~~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~l~L~~L~L~~ 229 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDM---SSIVQKAPNLKILNLSGNELKSE--R-ELDKIKGLKLEELWLDG 229 (267)
T ss_dssp TCCEEECTTSCCCCCGGG---TTHHHHSTTCCEEECTTSCCCSG--G-GGGGGTTSCCSEEECTT
T ss_pred CCCEEECCCCCCCCCccc---hhHHhhCCCCCEEECCCCccCCc--h-hhhhcccCCcceEEccC
Confidence 467777777766522111 22234566666666666666654 2 133333 566666543
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=96.93 E-value=0.00082 Score=49.55 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=21.5
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..+++|+.|++++|.+++ + + .++.+++|++|+++.
T Consensus 108 l~~l~~L~~L~L~~n~i~~-~-~-~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD-I-N-GLVHLPQLESLYLGN 143 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC-C-G-GGGGCTTCCEEECCS
T ss_pred hccCCCCCEEECCCCcCCC-C-h-hhcCCCCCCEEEccC
Confidence 4556666666666666665 2 2 366666666666654
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.93 E-value=0.00019 Score=58.35 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=38.6
Q ss_pred CCCCCe-----eeeee-EEcCCCCCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCC
Q 032440 56 NYSDCC-----QWERV-ECNNTTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRW 129 (140)
Q Consensus 56 ~~~~~C-----~w~gv-~c~~~~~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L 129 (140)
....|| .|.++ .|.. .+++.++++++++. + +++. + +++|++|++++|+++ .||. .+++|
T Consensus 38 ~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~--~---lp~~-l--~~~L~~L~Ls~N~l~-~ip~----~l~~L 102 (571)
T 3cvr_A 38 KQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLS--S---LPDN-L--PPQITVLEITQNALI-SLPE----LPASL 102 (571)
T ss_dssp TTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCS--C---CCSC-C--CTTCSEEECCSSCCS-CCCC----CCTTC
T ss_pred ccCCccccccchhhhcccccc--CCccEEEeCCCCCC--c---cCHh-H--cCCCCEEECcCCCCc-cccc----ccCCC
Confidence 345677 68888 6753 46788888888764 2 2222 2 245666666666665 4552 24555
Q ss_pred Ceeeeec
Q 032440 130 SFITQTL 136 (140)
Q Consensus 130 ~~L~L~~ 136 (140)
++|+|+.
T Consensus 103 ~~L~Ls~ 109 (571)
T 3cvr_A 103 EYLDACD 109 (571)
T ss_dssp CEEECCS
T ss_pred CEEEccC
Confidence 5555544
No 108
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.87 E-value=0.0002 Score=53.23 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=21.2
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..+++|++|++++|.+++.+|. .++.+++|++|+|+.
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~ 151 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSG 151 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTT
T ss_pred HhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCC
Confidence 44455555555555555555555 355555555555543
No 109
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=96.83 E-value=0.00098 Score=49.74 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=28.4
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..+++|+.|++++|.+++..|. .++.+++|++|+|+.+
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQN 321 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSS
T ss_pred hcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCC
Confidence 56677777777777777777777 5777777777777653
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.83 E-value=0.00093 Score=49.44 Aligned_cols=38 Identities=5% Similarity=-0.070 Sum_probs=27.8
Q ss_pred cCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 99 TPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
..+++|++|++++|.+++..|. .++++++|++|+|+.+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCE-QVRAFPALTSLDLSDN 179 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTT-SCCCCTTCCEEECCSC
T ss_pred hhccCCCEEEeeCCCcchhhHH-HhccCCCCCEEECCCC
Confidence 3467777777777777776666 5777888888887765
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=96.81 E-value=0.0016 Score=47.92 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=23.9
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..+++|+.|++++|.+++ +|. +..+++|++|+++.+
T Consensus 174 l~~l~~L~~L~L~~N~i~~-l~~--l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISD-LRA--LAGLKNLDVLELFSQ 210 (291)
T ss_dssp GTTCTTCCEEECCSSCCCB-CGG--GTTCTTCSEEEEEEE
T ss_pred hcCCCccCEEECCCCcCCC-Chh--hccCCCCCEEECcCC
Confidence 5566667777777776665 333 667777777777654
No 112
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.81 E-value=0.0016 Score=53.40 Aligned_cols=36 Identities=19% Similarity=0.067 Sum_probs=32.0
Q ss_pred CCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 100 PFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 100 ~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+++|+.|++++|+++ .||. .++++++|++|+|+.|
T Consensus 259 ~~~~L~~L~Ls~N~L~-~lp~-~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLT-RLPE-SLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCTTCCEEECCSSCCC-SCCG-GGGGSCTTCEEECCSC
T ss_pred ccccCcEEeCCCCCCC-cCCH-HHhhccccCEEEecCC
Confidence 4678999999999999 8999 6999999999999865
No 113
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.80 E-value=0.00011 Score=51.07 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=43.5
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..++++++.+. + + + .+..+++|+.|++++|.++ .+|. .+..+++|++|+|+.+
T Consensus 49 ~L~~L~ls~n~l~--~---l-~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 49 ACKHLALSTNNIE--K---I-S-SLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYN 103 (198)
T ss_dssp TCSEEECSEEEES--C---C-C-CHHHHTTCCEEEEEEEEEC-SCSS-HHHHHHHCSEEEEEEE
T ss_pred CCCEEECCCCCCc--c---c-c-ccccCCCCCEEECCCCCcc-cccc-hhhcCCcCCEEECcCC
Confidence 5778888888664 2 3 2 4778889999999999988 7888 5888889999998765
No 114
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=96.77 E-value=0.0013 Score=48.73 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=23.3
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..+++|+.|++++|.+++ +|+ ++.+++|++|+++.
T Consensus 103 ~~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITD-VTP--LAGLSNLQVLYLDL 138 (308)
T ss_dssp GTTCTTCCEEECTTSCCCC-CGG--GTTCTTCCEEECCS
T ss_pred hcCCCCCCEEECCCCCCCC-chh--hcCCCCCCEEECCC
Confidence 5566667777777776665 333 66677777777654
No 115
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.76 E-value=0.00073 Score=49.91 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=33.8
Q ss_pred CCcCCcEEEccCCcccc--ccCchhhhCCCCCCeeeeece
Q 032440 100 PFQQLESLDLIGNNIAG--CVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 100 ~l~~L~~L~Ls~N~l~G--~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+++.|+.|+||+|.+++ .+|. .++.+++|++|+|+-|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCC
Confidence 57899999999999999 8898 6899999999999865
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.69 E-value=0.00012 Score=50.82 Aligned_cols=55 Identities=20% Similarity=0.135 Sum_probs=33.1
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..++++++.+. .+ |..+..+++|+.|++++|.+++ +|. ++.+++|++|+|+.+
T Consensus 71 ~L~~L~l~~n~l~-----~l-~~~~~~~~~L~~L~L~~N~l~~-l~~--~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 71 NLRILSLGRNLIK-----KI-ENLDAVADTLEELWISYNQIAS-LSG--IEKLVNLRVLYMSNN 125 (198)
T ss_dssp TCCEEEEEEEEEC-----SC-SSHHHHHHHCSEEEEEEEECCC-HHH--HHHHHHSSEEEESEE
T ss_pred CCCEEECCCCCcc-----cc-cchhhcCCcCCEEECcCCcCCc-CCc--cccCCCCCEEECCCC
Confidence 3555666666543 12 2234455677777777777776 442 667777777777654
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.68 E-value=0.0022 Score=46.54 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=18.2
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
+..+++|+.|++++|++++- | .++.+++|++|+|+
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~-~--~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSI-V--MLGFLSKLEVLDLH 158 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBC-G--GGGGCTTCCEEECT
T ss_pred hcCcccccEEECCCCcCCCC-h--HHccCCCCCEEECC
Confidence 44555555555555555542 2 25555555555554
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.68 E-value=0.00031 Score=53.50 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=22.4
Q ss_pred ccCCcCCcEEEccCCccc----cccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIA----GCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~----G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..+++|+.|++++|.++ +.+|. .+..+++|++|+|+.
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLND 253 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTT
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCC
Confidence 445566666666666665 55555 456666666666553
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.64 E-value=0.0028 Score=46.05 Aligned_cols=38 Identities=37% Similarity=0.522 Sum_probs=33.7
Q ss_pred cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..+++|+.|++++|.+++. . .+..+++|++|+++.+
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~--~-~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT--G-GLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC--T-TSTTCCCCCEEEEEEE
T ss_pred HHccCCCCCEEECCCCcCcch--H-HhccCCCCCEEeCCCC
Confidence 377899999999999999987 4 5999999999999865
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.61 E-value=0.0019 Score=52.70 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=23.8
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..++.|+.|+|++|.+++ +| .+..+++|+.|+|+.+
T Consensus 171 l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSE
T ss_pred hccCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCC
Confidence 5566666666666666665 33 3667777777777653
No 121
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=96.60 E-value=0.0025 Score=47.25 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=20.6
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..+++|+.|++++|.+++- |+ ++.+++|++|+|+.
T Consensus 125 l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITNI-SP--LAGLTNLQYLSIGN 160 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GG--GGGCTTCCEEECCS
T ss_pred hcCCCCCCEEECCCCccCcC-cc--ccCCCCccEEEccC
Confidence 45566666666666666542 22 55666666666553
No 122
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=96.59 E-value=0.00089 Score=49.97 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=40.2
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..++++++.+. ...+..+..+++|+.|++++|.+++..| ++.+++|++|+++.+
T Consensus 289 L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 289 LNSLFLNNNQLG-----NEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQ 343 (347)
T ss_dssp CSEEECCSSCCC-----GGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC
T ss_pred CCEEECcCCcCC-----CcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhh
Confidence 444555555432 1224447889999999999999998665 678999999999765
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.49 E-value=0.0015 Score=51.26 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=22.0
Q ss_pred CCcCCcEEEccCCcccc--ccCchhhhCC-------------CCCCeeeeece
Q 032440 100 PFQQLESLDLIGNNIAG--CVENEGLERL-------------SRWSFITQTLI 137 (140)
Q Consensus 100 ~l~~L~~L~Ls~N~l~G--~iP~~~l~~l-------------~~L~~L~L~~~ 137 (140)
.+++|+.|++++|.++| .+|. .++++ ++|++|+++.+
T Consensus 355 ~l~~L~~L~L~~N~l~~l~~ip~-~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 355 LPQNLKQLHVEYNPLREFPDIPE-SVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp CCTTCCEEECCSSCCSSCCCCCT-TCCEEECCC--------------------
T ss_pred hhhhccEEECCCCCCCcCCCChH-HHHhhhhcccccccccccCcCCEEECCCC
Confidence 36789999999999999 8898 58877 78888888754
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.43 E-value=0.0014 Score=48.61 Aligned_cols=57 Identities=14% Similarity=0.044 Sum_probs=43.5
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccc-cCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGC-VENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~-iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..++++++.+. + ..+. +..+++|+.|++++|.+++. +|. .+.++++|++|+|+.+
T Consensus 71 ~l~~L~l~~n~l~--~---~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~ 128 (336)
T 2ast_B 71 GVIAFRCPRSFMD--Q---PLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGL 128 (336)
T ss_dssp TCSEEECTTCEEC--S---CCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTC
T ss_pred cceEEEcCCcccc--c---cchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCc
Confidence 4556666666543 2 1222 56789999999999999987 988 6999999999999764
No 125
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.36 E-value=0.0038 Score=50.93 Aligned_cols=34 Identities=32% Similarity=0.364 Sum_probs=14.4
Q ss_pred cCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 99 TPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
..+++|+.|+|++|.+++. + .++.+++|+.|+|+
T Consensus 128 ~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLE 161 (605)
T ss_dssp GGCTTCSEEECCSSCCCCC--G-GGGSCTTCSEEECC
T ss_pred cCCCccCEEECCCCccCCc--h-hhcccCCCCEEECc
Confidence 3344444444444444432 2 24444444444443
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.35 E-value=0.0012 Score=49.97 Aligned_cols=58 Identities=16% Similarity=0.116 Sum_probs=37.9
Q ss_pred CEEEEEcCCCCcccccccccCcccccCC-----cCCcEEEccCCccccccCchhhhCC-----CCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPF-----QQLESLDLIGNNIAGCVENEGLERL-----SRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l-----~~L~~L~Ls~N~l~G~iP~~~l~~l-----~~L~~L~L~~~ 137 (140)
.+..++++++.+...+ +..+..+ +.|++|++++|.+++..+. .++.. ++|++|+|+.+
T Consensus 52 ~L~~L~Ls~N~l~~~~-----~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N 119 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKN-----SDELVQILAAIPANVTSLNLSGNFLSYKSSD-ELVKTLAAIPFTITVLDLGWN 119 (362)
T ss_dssp TCCEEECCSSCGGGSC-----HHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSS
T ss_pred ceeEEECcCCCCCHHH-----HHHHHHHHhccCCCccEEECcCCcCChHHHH-HHHHHHHhCCCCccEEECcCC
Confidence 5777888877664211 2223332 7888888888888877766 34443 78888888754
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.15 E-value=0.0059 Score=47.91 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=37.5
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+..++++++.+. + + + ++.+++|++|++++|.+++. | ++++++|++|+++.+
T Consensus 65 ~L~~L~Ls~n~l~--~---~-~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 65 GLTKLICTSNNIT--T---L-D--LSQNTNLTYLACDSNKLTNL-D---VTPLTKLTYLNCDTN 116 (457)
T ss_dssp TCSEEECCSSCCS--C---C-C--CTTCTTCSEEECCSSCCSCC-C---CTTCTTCCEEECCSS
T ss_pred CCCEEEccCCcCC--e---E-c--cccCCCCCEEECcCCCCcee-e---cCCCCcCCEEECCCC
Confidence 4667777777664 2 2 1 67788888888888888873 2 678888888888754
No 128
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.14 E-value=0.0052 Score=47.92 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=23.1
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..+++|++|++++|.+++- |+ ++++++|++|+++.+
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDI-DP--LKNLTNLNRLELSSN 144 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GG--GTTCTTCSEEEEEEE
T ss_pred hcCCCCCCEEECCCCCCCCC-hH--HcCCCCCCEEECCCC
Confidence 55666666666666666653 32 666777777776643
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.11 E-value=0.00013 Score=57.40 Aligned_cols=50 Identities=6% Similarity=-0.160 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCC
Q 032440 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRW 129 (140)
Q Consensus 73 ~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L 129 (140)
.++.+++++++++ |. + |+.++++++|++|++++|.++|.+|. .++++++|
T Consensus 11 ~~L~~L~l~~n~l---~~--i-P~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L 60 (454)
T 1jl5_A 11 TFLQEPLRHSSNL---TE--M-PVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREM 60 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHH
T ss_pred ccchhhhcccCch---hh--C-ChhHhcccchhhhhccCCcccccCCc-ccccchhc
Confidence 3577788888866 53 3 44588899999999999999999998 58877654
No 130
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.09 E-value=0.0071 Score=47.17 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=22.6
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..+++|+.|++++|+++|.+| ++++++|+.|+++.+
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 385 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCE
T ss_pred hccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCC
Confidence 4556666666666666666554 456666666666543
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.02 E-value=0.0061 Score=49.49 Aligned_cols=31 Identities=13% Similarity=-0.046 Sum_probs=24.4
Q ss_pred cEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 105 ESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 105 ~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
+.|++++|.++ .||. .+.++++|++|+|+.|
T Consensus 210 ~~L~Ls~N~l~-~lp~-~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPE-NILSLDPTCTIILEDN 240 (571)
T ss_dssp EEEECCSSCCC-CCCG-GGGGSCTTEEEECCSS
T ss_pred eEEecCCCcce-ecCH-HHhcCCCCCEEEeeCC
Confidence 77888888877 5888 5888888888888765
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=95.89 E-value=0.0032 Score=47.86 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=21.9
Q ss_pred cCCcCCcEEEccCCcccc----ccCchhhhCCCCCCeeeeec
Q 032440 99 TPFQQLESLDLIGNNIAG----CVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~G----~iP~~~l~~l~~L~~L~L~~ 136 (140)
..+++|++|+|++|.+++ .+|. .+.++++|++|+|+.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~ 131 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHN 131 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCS
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcC
Confidence 455666666666666665 4555 456666666666554
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=95.80 E-value=0.0018 Score=48.98 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=41.5
Q ss_pred CCEEEEEcCCCCcccccccccCccc----ccCC-cCCcEEEccCCccccccCchhhhC-----CCCCCeeeeece
Q 032440 73 GRVIKLDLTQTRKWESAEWYMNASL----FTPF-QQLESLDLIGNNIAGCVENEGLER-----LSRWSFITQTLI 137 (140)
Q Consensus 73 ~~v~~l~l~~~~l~~~g~~~~~~~~----l~~l-~~L~~L~Ls~N~l~G~iP~~~l~~-----l~~L~~L~L~~~ 137 (140)
..+..++++++.+...+ +.. +..+ +.|+.|++++|.+++..+. .++. .++|++|+|+.+
T Consensus 80 ~~L~~L~Ls~n~l~~~~-----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKS-----SDELVKTLAAIPFTITVLDLGWNDFSSKSSS-EFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp TTCCEEECCSSCGGGSC-----HHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHTTSCTTCCEEECTTS
T ss_pred CCccEEECcCCcCChHH-----HHHHHHHHHhCCCCccEEECcCCcCCcHHHH-HHHHHHHhCCCceeEEEccCC
Confidence 46889999998775211 221 3344 7899999999999887665 3543 468999998754
No 134
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=95.74 E-value=0.012 Score=46.15 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=18.3
Q ss_pred ccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 98 l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
+..++.|+.|++++|+++| || ++.+++|++|+++.
T Consensus 208 l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSV 242 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCS
T ss_pred cccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeC
Confidence 4445555555555555555 43 34555555555543
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.59 E-value=0.014 Score=43.86 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCCcccccccccCcccccCCcCCcE-EEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLES-LDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 73 ~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~-L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
..++.+++++|... + .+++..|.+++.|+. ++++.|++++-.|. .+..+++|++|+++-+
T Consensus 54 ~~L~~L~Ls~N~i~--~--~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~-~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 54 GDLEKIEISQNDVL--E--VIEADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPNLQYLLISNT 114 (350)
T ss_dssp TTCCEEEEECCTTC--C--EECTTSBCSCTTCCEEEEEEETTCCEECTT-SBCCCTTCCEEEEEEE
T ss_pred CCCCEEECcCCCCC--C--ccChhHhhcchhhhhhhcccCCcccccCch-hhhhcccccccccccc
Confidence 35777888877643 2 233444566666554 44556666665555 5666777777766543
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.43 E-value=0.0023 Score=49.46 Aligned_cols=36 Identities=11% Similarity=-0.057 Sum_probs=29.9
Q ss_pred CcCCcEEEccCCcccc----ccCchhhhCCCCCCeeeeece
Q 032440 101 FQQLESLDLIGNNIAG----CVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 101 l~~L~~L~Ls~N~l~G----~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+.|+.|++++|.+++ .+|. .+..+++|++|+|+.+
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNN 408 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSS
T ss_pred CCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEECCCC
Confidence 5688889999998887 7888 6888889999888754
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.25 E-value=0.0024 Score=49.27 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=25.0
Q ss_pred CCcCCcEEEccCCccccc----cCchhhhCCCCCCeeeeece
Q 032440 100 PFQQLESLDLIGNNIAGC----VENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 100 ~l~~L~~L~Ls~N~l~G~----iP~~~l~~l~~L~~L~L~~~ 137 (140)
.++.|+.|++++|.+++. +|. .+.++++|++|+|+.+
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCR-VLRAKESLKELSLAGN 294 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHH-HHHHCTTCCEEECTTC
T ss_pred CCCCceEEECcCCCCCHHHHHHHHH-HHhhCCCcceEECCCC
Confidence 466777777777777664 566 4666777777777643
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.18 E-value=0.024 Score=42.09 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=33.8
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccccCchhhhCCCCCC-eeeee
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWS-FITQT 135 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~-~L~L~ 135 (140)
.+..++++++++. .+++..|.++++|+.|++++| ++ .|++..|.+|++|+ .+++.
T Consensus 227 ~L~~l~L~~n~i~-----~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 227 NLVSLDISKTNAT-----TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp TCCEEECTTBCCC-----EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEEC
T ss_pred CCeEEECCCCCcc-----eecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEc
Confidence 4677777776554 233445667777777777766 32 35554566666666 66654
No 139
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=94.91 E-value=0.0046 Score=50.66 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=21.6
Q ss_pred CCcCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 100 PFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 100 ~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+++|++|++++|+++ .||. .+++|++|+|+.+
T Consensus 79 ~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N 111 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSN 111 (622)
T ss_dssp CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSC
T ss_pred cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCC
Confidence 3567777777777776 3665 4566777776644
No 140
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.78 E-value=0.026 Score=36.85 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=26.2
Q ss_pred cCCcEEEccCCccccccCchhhhCCCCCCeeeeece
Q 032440 102 QQLESLDLIGNNIAGCVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 102 ~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+|+.|+|++|+|+. ||...+..+++|++|+|+.|
T Consensus 31 ~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCCcCCc-cChhhhhhccccCEEEecCC
Confidence 367888888888885 44435778888888888755
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.51 E-value=0.0052 Score=47.07 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=20.0
Q ss_pred cCCcCCcEEEccCCccccc----cCchhhhCCCCCCeeeeece
Q 032440 99 TPFQQLESLDLIGNNIAGC----VENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~G~----iP~~~l~~l~~L~~L~L~~~ 137 (140)
...+.|+.|+|++|.++.. ++. .+..+++|++|+|+.+
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~-~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFN 249 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHH-HHHHCSSCCEEECTTS
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHH-HHHhCCCCCEEeccCC
Confidence 3445566666666665542 333 3444556666666543
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.20 E-value=0.013 Score=46.68 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=37.6
Q ss_pred EEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccccc-cCchhhhCCCCCCeeeeece
Q 032440 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGC-VENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 75 v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~G~-iP~~~l~~l~~L~~L~L~~~ 137 (140)
+..++++.+++...| + +..+..+++|+.|++++|.+++. ++. .+..+++|++|+|+.+
T Consensus 465 L~~L~L~~n~l~~~~---~-~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 465 VRWMLLGYVGESDEG---L-MEFSRGCPNLQKLEMRGCCFSERAIAA-AVTKLPSLRYLWVQGY 523 (592)
T ss_dssp CCEEEECSCCSSHHH---H-HHHHTCCTTCCEEEEESCCCBHHHHHH-HHHHCSSCCEEEEESC
T ss_pred ceEeeccCCCCCHHH---H-HHHHhcCcccCeeeccCCCCcHHHHHH-HHHhcCccCeeECcCC
Confidence 566666666543111 1 22245678888889988888766 444 4567888888888754
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.05 E-value=0.0085 Score=45.88 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=21.7
Q ss_pred cCCcCCcEEEccCCccccc----cCchhhhCCCCCCeeeeece
Q 032440 99 TPFQQLESLDLIGNNIAGC----VENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 99 ~~l~~L~~L~Ls~N~l~G~----iP~~~l~~l~~L~~L~L~~~ 137 (140)
...+.|++|||++|.++.. ++. .+..+++|++|+|+.+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYN 221 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSS
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCC
Confidence 3455666666666666542 233 3555666666666543
No 144
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.61 E-value=0.059 Score=35.08 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=30.9
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCCccc
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIA 115 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N~l~ 115 (140)
.++.++|++|.+. .+++..|..++.|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~-----~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLT-----ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCS-----SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCC-----ccChhhhhhccccCEEEecCCCee
Confidence 4788999999886 455667888999999999999775
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=92.98 E-value=0.017 Score=39.72 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=6.4
Q ss_pred CEEEEEcCCCCc
Q 032440 74 RVIKLDLTQTRK 85 (140)
Q Consensus 74 ~v~~l~l~~~~l 85 (140)
.+..++|+++.+
T Consensus 66 ~L~~L~Ls~n~i 77 (185)
T 1io0_A 66 YVKKFSIVGTRS 77 (185)
T ss_dssp SCCEEECTTSCC
T ss_pred CcCEEECcCCCC
Confidence 355555555544
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.15 E-value=0.14 Score=37.93 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=21.3
Q ss_pred cccccCCcCCcEEEccCCccccccCchhhhCCCCCCeee
Q 032440 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFIT 133 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~ 133 (140)
+..|.++++|+.+++++|+++.--+. .|.+|++|+.+.
T Consensus 290 ~~aF~~c~~L~~l~l~~n~i~~I~~~-aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGDKITTLGDE-LFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTTCTTEEEEEECSSCCCEECTT-TTCTTCCCCEEE
T ss_pred hhhhhCCccCCEEEeCCCccCccchh-hhcCCcchhhhc
Confidence 34455666666666666665543333 466666666554
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=91.25 E-value=0.04 Score=37.80 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCCcccccccccCcccccCCcCCcEEEc--cCCccccc----cCchhhhCCCCCCeeeeece
Q 032440 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDL--IGNNIAGC----VENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 73 ~~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~L--s~N~l~G~----iP~~~l~~l~~L~~L~L~~~ 137 (140)
..+..++++++.+..-|...+ ...+...+.|++|++ ++|.++.. +.. .+...++|++|+|+.+
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l-~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILAL-VEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHH-HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCS
T ss_pred CCcCEEECcCCcCCHHHHHHH-HHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCC
Confidence 358899999997642221111 223566788999999 88998875 334 4667789999999865
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=90.07 E-value=0.21 Score=34.39 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=18.1
Q ss_pred CEEEEEcCCCCcccccccccCcccccCCcCCcEEEccCC
Q 032440 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGN 112 (140)
Q Consensus 74 ~v~~l~l~~~~l~~~g~~~~~~~~l~~l~~L~~L~Ls~N 112 (140)
++.++|+++...+..|- ..+..+++|+.|+|+++
T Consensus 62 ~L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCC
Confidence 57888887765542221 11344555555555554
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=89.29 E-value=0.19 Score=39.88 Aligned_cols=37 Identities=3% Similarity=-0.297 Sum_probs=28.6
Q ss_pred CCcCCcEEEccCCcccc-ccCchhhhCCCCCCeeeeece
Q 032440 100 PFQQLESLDLIGNNIAG-CVENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 100 ~l~~L~~L~Ls~N~l~G-~iP~~~l~~l~~L~~L~L~~~ 137 (140)
.+++|+.|++++|++++ .+|. .+..+++|++|+|+.+
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLME-FSRGCPNLQKLEMRGC 498 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHH-HHTCCTTCCEEEEESC
T ss_pred hCccceEeeccCCCCCHHHHHH-HHhcCcccCeeeccCC
Confidence 36788888888888887 4555 4678888999888754
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=88.26 E-value=0.12 Score=39.54 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=8.1
Q ss_pred CcCCcEEEccCCccccc
Q 032440 101 FQQLESLDLIGNNIAGC 117 (140)
Q Consensus 101 l~~L~~L~Ls~N~l~G~ 117 (140)
++.|+.|+|++|.+...
T Consensus 251 ~p~Lr~L~L~~~~i~~~ 267 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNV 267 (362)
T ss_dssp CTTCCEEEEESCTTHHH
T ss_pred CCCcCEEeCCCCCCchH
Confidence 44455555554444433
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=85.10 E-value=0.35 Score=38.27 Aligned_cols=34 Identities=6% Similarity=-0.069 Sum_probs=14.7
Q ss_pred CcCCcEEEccCCccccccCchhh-hCCCCCCeeeee
Q 032440 101 FQQLESLDLIGNNIAGCVENEGL-ERLSRWSFITQT 135 (140)
Q Consensus 101 l~~L~~L~Ls~N~l~G~iP~~~l-~~l~~L~~L~L~ 135 (140)
+++|+.|++++|.+++..+. .+ ..+++|++|+|+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~-~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMH-HVLSGCDSLRKLEIR 489 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHH-HHHHHCTTCCEEEEE
T ss_pred chhccEeeccCCCCcHHHHH-HHHhcCCCcCEEECc
Confidence 34444444444444443333 12 334444444443
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=83.87 E-value=0.42 Score=37.75 Aligned_cols=36 Identities=8% Similarity=0.001 Sum_probs=21.4
Q ss_pred CCcCCcEEEccCC-ccccc-cCchhhhCCCCCCeeeeec
Q 032440 100 PFQQLESLDLIGN-NIAGC-VENEGLERLSRWSFITQTL 136 (140)
Q Consensus 100 ~l~~L~~L~Ls~N-~l~G~-iP~~~l~~l~~L~~L~L~~ 136 (140)
.+++|+.|++++| .++.. ++. ...++++|++|+|+.
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~ 165 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRE 165 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTT
T ss_pred hCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcC
Confidence 4667777777766 44443 444 344677777777653
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=82.95 E-value=1.3 Score=33.15 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=22.0
Q ss_pred cccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeee
Q 032440 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQ 134 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L 134 (140)
...|.++.+|+.+++..+ + -.|+...+.+|++|+.+++
T Consensus 303 ~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 303 PRVFMDCVKLSSVTLPTA-L-KTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCCCCC
T ss_pred hhhhcCCCCCCEEEcCcc-c-cEEHHHHhhCCCCCCEEEE
Confidence 334666667777776543 2 2344435666777776655
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=81.25 E-value=1.1 Score=30.80 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=26.8
Q ss_pred cCCcEEEccCCccccccCchhhhCCCCCCeeeeec
Q 032440 102 QQLESLDLIGNNIAGCVENEGLERLSRWSFITQTL 136 (140)
Q Consensus 102 ~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~~ 136 (140)
-.|+.||+|++.++-.=-. .+..|++|++|+|+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~ 94 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCK 94 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEES
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCC
Confidence 3689999999987765223 478899999999975
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=79.95 E-value=1.5 Score=33.65 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=22.9
Q ss_pred cccccCCcCCcEEEccCCccc----cccCchhhhCCCCCCeeee
Q 032440 95 ASLFTPFQQLESLDLIGNNIA----GCVENEGLERLSRWSFITQ 134 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~----G~iP~~~l~~l~~L~~L~L 134 (140)
...|.++++|+.+++++|.+. ..|+...+..|++|+.++|
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 334666777777777666554 1244434555666665554
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=78.54 E-value=0.58 Score=35.60 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=20.3
Q ss_pred CcCCcEEEccCCccccc----cCchhhhCCCCCCeeeeece
Q 032440 101 FQQLESLDLIGNNIAGC----VENEGLERLSRWSFITQTLI 137 (140)
Q Consensus 101 l~~L~~L~Ls~N~l~G~----iP~~~l~~l~~L~~L~L~~~ 137 (140)
++.|+.|||+.|.+++. ++. .+.++++|+.|+|+.+
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~-~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHT-THHHHTTCSEEECCSB
T ss_pred CCCCCEEECCCCCCChHHHHHHHh-hcccCCcceEEECCCC
Confidence 45666666666666553 333 3445566666666543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=77.67 E-value=2.4 Score=32.02 Aligned_cols=39 Identities=5% Similarity=0.071 Sum_probs=26.4
Q ss_pred cccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
...|.++++|+.+++..| ++ .|+...+.+|++|+.+++.
T Consensus 336 ~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEE
T ss_pred HHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEEC
Confidence 344677778888877665 33 4555467778888887765
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=75.15 E-value=4.9 Score=30.23 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=25.0
Q ss_pred ccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 96 ~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
..|.++.+|+.+++..+ ++ .|+...+.+|++|+.+++.
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEES
T ss_pred hHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEEC
Confidence 34667777777777544 32 4555467778888877765
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=69.99 E-value=6.9 Score=29.90 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=14.8
Q ss_pred cccccCCcCCcEEEccCCccc
Q 032440 95 ASLFTPFQQLESLDLIGNNIA 115 (140)
Q Consensus 95 ~~~l~~l~~L~~L~Ls~N~l~ 115 (140)
...|.++++|+.++++.|+++
T Consensus 173 ~~aF~~c~~L~~l~l~~n~l~ 193 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKTKIT 193 (401)
T ss_dssp SSTTTTCTTCCEEECTTSCCS
T ss_pred HHHhhCcccCCeeecCCCcce
Confidence 445777888888888776554
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=69.84 E-value=4.4 Score=30.13 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=28.9
Q ss_pred cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
.|.++++|+.+++.++.++ .|+...+.+|++|+.++|.
T Consensus 281 aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccccccccc-eehhhhhcCCCCCCEEEcC
Confidence 4677888888888877665 4555468889999988874
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=64.25 E-value=2 Score=30.02 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=6.7
Q ss_pred CEEEEEcCCCCc
Q 032440 74 RVIKLDLTQTRK 85 (140)
Q Consensus 74 ~v~~l~l~~~~l 85 (140)
.++.++|+++.+
T Consensus 71 ~L~~L~L~~n~i 82 (197)
T 1pgv_A 71 HIEKFSLANTAI 82 (197)
T ss_dssp CCCEEECTTSCC
T ss_pred CcCEEEccCCCC
Confidence 455566665554
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=57.20 E-value=12 Score=28.12 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=22.2
Q ss_pred cccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 97 ~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
.|.++.+|+.+++..+ ++ .|+...+.+|++|+.+.|.
T Consensus 306 aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEC
T ss_pred eecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEEC
Confidence 4556667777776543 22 3444356677777777663
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=56.28 E-value=8.3 Score=28.94 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=25.3
Q ss_pred ccccCCcCCcEEEccCCccccccCchhhhCCCCCCeeeee
Q 032440 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRWSFITQT 135 (140)
Q Consensus 96 ~~l~~l~~L~~L~Ls~N~l~G~iP~~~l~~l~~L~~L~L~ 135 (140)
..|.++++|+.+++..+ ++ .|+...+.+|++|+.+++.
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCC
T ss_pred hhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEEC
Confidence 34667777888877643 22 4555467788888888764
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.56 E-value=22 Score=21.53 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=11.0
Q ss_pred ccccCCcCCcEEEccCC
Q 032440 96 SLFTPFQQLESLDLIGN 112 (140)
Q Consensus 96 ~~l~~l~~L~~L~Ls~N 112 (140)
..|.++.+|+.+.+.+.
T Consensus 37 ~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 37 GMFSGCTALEKLILTGE 53 (100)
T ss_dssp TSSTTCTTCCCEEECCS
T ss_pred HHHhccCCccEEEEcCC
Confidence 34667777777776553
No 165
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=21.70 E-value=29 Score=14.93 Aligned_cols=11 Identities=27% Similarity=0.909 Sum_probs=7.7
Q ss_pred CCCeeeeeeEE
Q 032440 58 SDCCQWERVEC 68 (140)
Q Consensus 58 ~~~C~w~gv~c 68 (140)
...|+|.|..-
T Consensus 5 dgacswrglen 15 (23)
T 3ox7_P 5 DGACSWRGLEN 15 (26)
T ss_pred Ccccccccchh
Confidence 35789988653
Done!