Query 032441
Match_columns 140
No_of_seqs 119 out of 578
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 23:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_A Histone H2A-IV; histone 100.0 6.6E-49 2.3E-53 290.9 9.9 124 6-129 1-124 (129)
2 2nqb_C Histone H2A; nucleosome 100.0 7.1E-49 2.4E-53 288.7 9.8 120 7-127 1-120 (123)
3 1id3_C Histone H2A.1; nucleoso 100.0 3.1E-48 1E-52 288.0 12.1 121 16-140 11-131 (131)
4 2f8n_G Core histone macro-H2A. 100.0 5.9E-48 2E-52 282.7 9.6 113 13-126 6-118 (120)
5 2f8n_K Histone H2A type 1; nuc 100.0 6.4E-48 2.2E-52 291.4 10.0 126 5-130 19-144 (149)
6 1f66_C Histone H2A.Z; nucleoso 100.0 2.3E-46 7.7E-51 277.0 9.7 112 16-128 13-125 (128)
7 2jss_A Chimera of histone H2B. 100.0 4.9E-37 1.7E-41 239.9 10.1 98 19-117 94-192 (192)
8 3ksy_A SOS-1, SON of sevenless 99.9 1.1E-25 3.6E-30 209.5 6.1 98 21-120 95-192 (1049)
9 1jfi_A Transcription regulator 99.9 3.6E-24 1.2E-28 151.3 6.3 82 23-104 4-85 (98)
10 1n1j_B NF-YC; histone-like PAI 99.8 4.8E-20 1.6E-24 129.8 8.6 79 26-104 15-93 (97)
11 2yfw_B Histone H4, H4; cell cy 99.8 2.5E-19 8.4E-24 127.5 8.0 89 6-97 1-95 (103)
12 1tzy_D Histone H4-VI; histone- 99.8 3.6E-19 1.2E-23 126.5 8.7 78 16-96 17-94 (103)
13 4g92_C HAPE; transcription fac 99.8 3.6E-19 1.2E-23 129.6 8.3 77 28-104 39-115 (119)
14 2byk_A Chrac-16; nucleosome sl 99.7 4.6E-18 1.6E-22 127.0 5.8 84 20-103 9-93 (140)
15 1f1e_A Histone fold protein; a 99.5 1.8E-14 6.1E-19 109.1 7.0 71 25-96 77-147 (154)
16 1id3_B Histone H4; nucleosome 99.5 1.4E-13 4.7E-18 97.7 8.5 78 16-96 16-93 (102)
17 1ku5_A HPHA, archaeal histon; 99.4 1.5E-12 5.3E-17 86.0 6.8 65 30-95 6-70 (70)
18 1b67_A Protein (histone HMFA); 99.3 4.3E-12 1.5E-16 83.1 6.9 64 30-94 2-65 (68)
19 2hue_C Histone H4; mini beta s 99.1 5.2E-10 1.8E-14 76.4 8.4 71 23-96 5-75 (84)
20 1n1j_A NF-YB; histone-like PAI 99.1 3.4E-10 1.1E-14 78.4 6.6 68 27-94 5-73 (93)
21 3b0c_W CENP-W, centromere prot 99.0 1E-09 3.4E-14 73.6 7.2 65 30-94 4-68 (76)
22 1taf_B TFIID TBP associated fa 99.0 1.8E-09 6.1E-14 71.9 6.9 66 28-94 4-69 (70)
23 1f1e_A Histone fold protein; a 98.9 1.5E-09 5.2E-14 82.0 7.0 64 30-93 4-67 (154)
24 2byk_B Chrac-14; nucleosome sl 98.9 1.8E-09 6.1E-14 79.2 5.5 72 28-99 7-79 (128)
25 1taf_A TFIID TBP associated fa 98.8 2.5E-08 8.4E-13 66.0 7.1 61 34-95 5-65 (68)
26 3b0c_T CENP-T, centromere prot 98.7 8.8E-09 3E-13 73.8 4.9 71 28-99 5-75 (111)
27 1jfi_B DR1 protein, transcript 98.5 1.4E-07 4.7E-12 72.8 6.8 78 25-103 10-87 (179)
28 3v9r_A MHF1, uncharacterized p 98.5 3.8E-07 1.3E-11 63.3 6.7 79 26-105 11-89 (90)
29 4dra_A Centromere protein S; D 98.4 3.8E-07 1.3E-11 65.7 5.5 75 27-105 27-104 (113)
30 2hue_B Histone H3; mini beta s 98.3 1.3E-06 4.5E-11 58.9 6.7 66 29-94 2-71 (77)
31 3nqj_A Histone H3-like centrom 98.3 1E-06 3.5E-11 60.2 5.8 66 29-94 2-73 (82)
32 3b0b_B CENP-S, centromere prot 98.3 6.9E-07 2.4E-11 63.7 5.0 77 27-104 19-95 (107)
33 3vh5_A CENP-S; histone fold, c 98.2 2.1E-06 7.2E-11 63.8 5.3 79 26-105 18-96 (140)
34 2yfv_A Histone H3-like centrom 98.1 3.9E-06 1.3E-10 59.2 5.9 68 27-94 24-98 (100)
35 3nqu_A Histone H3-like centrom 98.1 4.4E-06 1.5E-10 62.1 6.1 68 27-94 58-131 (140)
36 3r45_A Histone H3-like centrom 98.1 3.7E-06 1.3E-10 63.5 5.3 70 27-96 74-149 (156)
37 2ly8_A Budding yeast chaperone 98.1 8.9E-06 3E-10 59.1 7.0 52 44-95 60-111 (121)
38 1tzy_B Histone H2B; histone-fo 98.1 7.6E-06 2.6E-10 59.8 6.5 66 28-94 35-100 (126)
39 2l5a_A Histone H3-like centrom 98.1 3.2E-06 1.1E-10 67.6 4.9 59 36-95 167-225 (235)
40 1tzy_C Histone H3; histone-fol 98.0 1.3E-05 4.4E-10 59.4 6.8 67 28-94 60-130 (136)
41 2nqb_D Histone H2B; nucleosome 98.0 1.5E-05 5.1E-10 58.1 6.3 64 30-94 34-97 (123)
42 2jss_A Chimera of histone H2B. 97.5 0.00023 7.7E-09 55.0 6.3 61 34-94 7-67 (192)
43 1bh9_B TAFII28; histone fold, 97.0 0.0014 4.9E-08 45.0 6.1 64 30-94 16-80 (89)
44 4dra_E Centromere protein X; D 96.6 0.0088 3E-07 40.7 6.9 67 27-93 9-77 (84)
45 3b0b_C CENP-X, centromere prot 96.5 0.0084 2.9E-07 40.5 6.6 65 28-92 6-72 (81)
46 1h3o_B Transcription initiatio 95.4 0.075 2.6E-06 35.4 7.1 66 30-95 5-70 (76)
47 2l5a_A Histone H3-like centrom 93.9 0.065 2.2E-06 42.7 4.6 66 28-93 9-81 (235)
48 1wwi_A Hypothetical protein TT 91.7 0.41 1.4E-05 35.6 6.0 60 30-90 2-61 (148)
49 1k6k_A ATP-dependent CLP prote 89.5 0.5 1.7E-05 32.9 4.6 40 65-104 6-45 (143)
50 1r4v_A Hypothetical protein AQ 85.4 0.56 1.9E-05 35.6 2.9 60 30-90 26-85 (171)
51 2y1q_A CLPC N-domain, negative 84.9 0.95 3.2E-05 31.7 3.9 40 65-104 10-51 (150)
52 3fes_A ATP-dependent CLP endop 84.8 0.78 2.7E-05 32.5 3.4 40 65-104 12-53 (145)
53 1khy_A CLPB protein; alpha hel 84.6 1.1 3.7E-05 31.3 4.1 33 65-97 10-42 (148)
54 3fh2_A Probable ATP-dependent 82.4 0.97 3.3E-05 31.9 3.1 40 65-104 11-52 (146)
55 3fes_A ATP-dependent CLP endop 80.8 1.5 5E-05 31.0 3.5 40 65-104 86-127 (145)
56 3v9r_B MHF2, uncharacterized p 79.9 7.5 0.00026 26.4 6.6 48 31-78 2-51 (88)
57 3fh2_A Probable ATP-dependent 79.9 2 7E-05 30.2 4.1 40 65-104 86-127 (146)
58 3zri_A CLPB protein, CLPV; cha 79.2 1.9 6.7E-05 31.8 3.9 48 56-103 17-69 (171)
59 1k6k_A ATP-dependent CLP prote 74.4 3.3 0.00011 28.6 3.8 40 65-104 84-125 (143)
60 1khy_A CLPB protein; alpha hel 72.9 5.5 0.00019 27.5 4.7 40 65-104 87-127 (148)
61 3zri_A CLPB protein, CLPV; cha 72.9 4.1 0.00014 30.1 4.2 32 66-97 104-136 (171)
62 2y1q_A CLPC N-domain, negative 68.7 3.8 0.00013 28.5 3.1 33 65-97 84-116 (150)
63 2v1u_A Cell division control p 64.5 27 0.00091 26.9 7.5 62 33-94 203-274 (387)
64 1r6b_X CLPA protein; AAA+, N-t 63.3 9 0.00031 33.7 5.0 40 65-104 6-45 (758)
65 2vxz_A Pyrsv_GP04; viral prote 61.2 24 0.00081 26.4 6.2 46 59-105 71-116 (165)
66 3kw6_A 26S protease regulatory 51.2 23 0.00078 22.0 4.2 23 72-94 49-71 (78)
67 3pxg_A Negative regulator of g 48.5 14 0.00049 30.8 3.6 39 65-103 10-50 (468)
68 2qby_A CDC6 homolog 1, cell di 48.2 43 0.0015 25.6 6.2 62 34-95 200-271 (386)
69 1g8p_A Magnesium-chelatase 38 47.7 33 0.0011 26.3 5.4 47 48-94 267-320 (350)
70 3uk6_A RUVB-like 2; hexameric 47.3 56 0.0019 25.3 6.8 62 34-95 262-329 (368)
71 3pxg_A Negative regulator of g 46.1 14 0.00049 30.8 3.2 34 65-98 84-117 (468)
72 4gqb_C Histone H4 peptide; TIM 44.1 8.4 0.00029 20.0 0.9 9 7-15 2-10 (26)
73 3pxi_A Negative regulator of g 43.2 18 0.00062 31.9 3.6 32 65-96 10-41 (758)
74 2dzn_B 26S protease regulatory 41.4 45 0.0015 20.9 4.5 45 47-95 23-67 (82)
75 3fwb_A Cell division control p 39.2 79 0.0027 20.6 8.3 49 66-114 95-149 (161)
76 3pxi_A Negative regulator of g 37.4 22 0.00076 31.3 3.2 34 65-98 84-117 (758)
77 3k1j_A LON protease, ATP-depen 37.4 70 0.0024 27.4 6.4 30 66-95 345-374 (604)
78 1qvr_A CLPB protein; coiled co 35.8 29 0.001 31.1 3.8 34 65-98 10-43 (854)
79 3n22_A Protein S100-A2; EF-han 35.5 58 0.002 21.1 4.4 53 61-113 6-70 (98)
80 1r6b_X CLPA protein; AAA+, N-t 34.3 31 0.0011 30.3 3.6 34 65-98 84-117 (758)
81 3f9v_A Minichromosome maintena 32.1 32 0.0011 29.8 3.3 47 48-94 521-585 (595)
82 1lv7_A FTSH; alpha/beta domain 30.8 56 0.0019 24.1 4.1 27 68-94 224-250 (257)
83 2qby_B CDC6 homolog 3, cell di 30.4 1.5E+02 0.0052 22.7 6.8 60 34-95 200-269 (384)
84 2krk_A 26S protease regulatory 30.3 73 0.0025 20.4 4.2 36 55-94 44-79 (86)
85 3f8t_A Predicted ATPase involv 30.3 98 0.0033 26.9 6.0 83 30-114 393-499 (506)
86 3nso_A Protein S100-A3; EF-han 29.6 71 0.0024 21.0 4.1 52 61-112 5-68 (101)
87 3vlf_B 26S protease regulatory 28.8 66 0.0023 20.5 3.8 33 58-94 37-69 (88)
88 3aji_B S6C, proteasome (prosom 28.2 54 0.0019 20.3 3.2 19 76-94 51-69 (83)
89 3h4m_A Proteasome-activating n 27.9 66 0.0023 23.9 4.1 30 66-95 228-257 (285)
90 2r2i_A Guanylyl cyclase-activa 26.2 1.2E+02 0.0041 20.9 5.1 40 66-105 130-169 (198)
91 1ixz_A ATP-dependent metallopr 24.6 68 0.0023 23.6 3.6 27 67-93 227-253 (254)
92 1iy2_A ATP-dependent metallopr 24.5 66 0.0023 24.1 3.6 27 67-93 251-277 (278)
93 1f6v_A DNA transposition prote 24.3 17 0.00058 24.7 0.1 28 66-94 50-77 (91)
94 1bjf_A Neurocalcin delta; calc 23.7 84 0.0029 21.4 3.8 43 69-112 149-191 (193)
95 1fnn_A CDC6P, cell division co 23.4 2.1E+02 0.0072 21.8 6.4 61 34-94 196-272 (389)
96 1jba_A GCAP-2, protein (guanyl 23.3 1.6E+02 0.0054 20.4 5.3 41 65-105 146-186 (204)
97 2c9o_A RUVB-like 1; hexameric 22.7 70 0.0024 26.3 3.6 63 33-95 368-436 (456)
98 2r44_A Uncharacterized protein 22.4 95 0.0033 23.7 4.2 28 67-94 268-295 (331)
99 1qvr_A CLPB protein; coiled co 21.2 60 0.0021 29.1 3.1 33 65-97 87-119 (854)
100 1s1e_A KV channel interacting 21.0 1.6E+02 0.0055 21.2 5.0 38 67-104 173-210 (224)
101 3rm1_A Protein S100-B; alpha-h 20.9 1.5E+02 0.0052 18.3 4.3 53 61-113 4-68 (92)
102 1wy1_A Hypothetical protein PH 20.7 1.2E+02 0.0042 22.3 4.3 56 56-113 51-110 (172)
103 2ggz_A Guanylyl cyclase-activa 20.3 1.8E+02 0.006 20.5 5.0 39 66-104 134-172 (211)
104 4eto_A Protein S100-A4; calciu 20.2 1.6E+02 0.0054 18.6 4.3 53 61-113 5-69 (93)
105 2bl0_B Myosin regulatory light 20.1 1.3E+02 0.0045 19.1 4.0 83 28-113 35-128 (145)
No 1
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=6.6e-49 Score=290.94 Aligned_cols=124 Identities=68% Similarity=1.073 Sum_probs=104.8
Q ss_pred cccCCCCCCCCCCCCCCcCcccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 032441 6 AATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRII 85 (140)
Q Consensus 6 ~~~~gk~gk~~~~~~~s~s~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~It 85 (140)
||++||.|.+.+++.+|+|+|+||||||+||+|||+++++++||+++|+|||+||||||++||||+|+|.|+++++++|+
T Consensus 1 m~~~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 80 (129)
T 1tzy_A 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80 (129)
T ss_dssp -------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCCCCCCCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEc
Confidence 45566633335667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhccHHHHhhhcCceecCCccCCCcCccccccchhcc
Q 032441 86 PRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAAR 129 (140)
Q Consensus 86 P~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~i~~~~~~~k~~~~ 129 (140)
|+||++||+||+|||+||+++||++|||+|+||++|+++|.+++
T Consensus 81 p~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (129)
T 1tzy_A 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSH 124 (129)
T ss_dssp HHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred HHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHHHcCcccccc
Confidence 99999999999999999999999999999999999999987654
No 2
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=7.1e-49 Score=288.69 Aligned_cols=120 Identities=69% Similarity=1.093 Sum_probs=104.8
Q ss_pred ccCCCCCCCCCCCCCCcCcccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceech
Q 032441 7 ATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIP 86 (140)
Q Consensus 7 ~~~gk~gk~~~~~~~s~s~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP 86 (140)
|++||+|| .+++++|+|+|+||||||+||+|||+++++++||+++|+|||+||||||++||||+|+|+|+++++++|+|
T Consensus 1 ~~~~~~~~-~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp 79 (123)
T 2nqb_C 1 SGRGKGGK-VKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 79 (123)
T ss_dssp -------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCCCCC-CCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccH
Confidence 46788777 45667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhccHHHHhhhcCceecCCccCCCcCccccccchh
Q 032441 87 RHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAA 127 (140)
Q Consensus 87 ~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~i~~~~~~~k~~ 127 (140)
+||++||+||+|||+||+++||++|||+|+||++|+++|.+
T Consensus 80 ~hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~ 120 (123)
T 2nqb_C 80 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 120 (123)
T ss_dssp HHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSSCC--
T ss_pred HHHHHHHhccHHHHHHhcCceeCCCCcCCCccHHHcCcccc
Confidence 99999999999999999999999999999999999998764
No 3
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=3.1e-48 Score=288.02 Aligned_cols=121 Identities=73% Similarity=1.119 Sum_probs=106.2
Q ss_pred CCCCCCCcCcccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 16 KDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 16 ~~~~~~s~s~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
.+++.+|+|+|+||+|||+||+|||+++++++||+++|+|||+||||||++||||+|+|+|+++++++|+|+||++||+|
T Consensus 11 ~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 11 AAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp -----CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhhcCceecCCccCCCcCccccccchhcccCCCCCCCCCC
Q 032441 96 DEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARKGEIGSVSQEF 140 (140)
Q Consensus 96 D~EL~~L~~~~~Ia~ggv~p~i~~~~~~~k~~~~~~~~~~~~~~~ 140 (140)
|+|||+||+++||++|||+|+||++|+++|.++++ ++||+|
T Consensus 91 DeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~~~~----~~~~~~ 131 (131)
T 1id3_C 91 DDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKAT----KASQEL 131 (131)
T ss_dssp CHHHHHHTTTEEETTCCCCCCCCGGGSCCSCCSCC----------
T ss_pred cHHHHHHhcCceecCCccCCCccHHHcCccccccc----cccccC
Confidence 99999999999999999999999999999865332 567764
No 4
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=5.9e-48 Score=282.75 Aligned_cols=113 Identities=65% Similarity=0.996 Sum_probs=105.7
Q ss_pred CCCCCCCCCCcCcccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHH
Q 032441 13 GRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLA 92 (140)
Q Consensus 13 gk~~~~~~~s~s~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~A 92 (140)
|| .+++++|+|+|+||||||+||+|||++++|++||+++|+|||+||||||++||+|+|+|+|+++++++|+|+||++|
T Consensus 6 ~~-~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lA 84 (120)
T 2f8n_G 6 GK-KKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLA 84 (120)
T ss_dssp -----CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CC-CCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHH
Confidence 44 35567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHhhhcCceecCCccCCCcCccccccch
Q 032441 93 VKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKA 126 (140)
Q Consensus 93 I~nD~EL~~L~~~~~Ia~ggv~p~i~~~~~~~k~ 126 (140)
|+||+|||+||+++||++|||+|+||++|+++|.
T Consensus 85 I~nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~ 118 (120)
T 2f8n_G 85 VANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118 (120)
T ss_dssp HHTSHHHHHHTTTEEETTCCCCCCCCGGGSCCC-
T ss_pred HhcCHHHHHHhCCceECCCCcCCCcCHHHcCCcc
Confidence 9999999999999999999999999999999875
No 5
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=6.4e-48 Score=291.44 Aligned_cols=126 Identities=65% Similarity=1.055 Sum_probs=104.1
Q ss_pred ccccCCCCCCCCCCCCCCcCcccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 032441 5 AAATKGGRGRSKDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRI 84 (140)
Q Consensus 5 ~~~~~gk~gk~~~~~~~s~s~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~I 84 (140)
.||++|+++.+.+++.+|+|+|+||||||+||+|||++++|++||+++|+|||+||||||++||||+|+|+|+++++++|
T Consensus 19 ~~~~~~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrI 98 (149)
T 2f8n_K 19 SMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 98 (149)
T ss_dssp ---------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred ccccCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 47777876433566789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhccHHHHhhhcCceecCCccCCCcCccccccchhccc
Q 032441 85 IPRHIQLAVKNDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAARK 130 (140)
Q Consensus 85 tP~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~i~~~~~~~k~~~~~ 130 (140)
+|+||++||+||+|||+||+++||++|||+|+||++|+++|.++++
T Consensus 99 tprhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~~~~ 144 (149)
T 2f8n_K 99 IPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHH 144 (149)
T ss_dssp CHHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC------
T ss_pred cHHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHHHcCccccccc
Confidence 9999999999999999999999999999999999999999875443
No 6
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=2.3e-46 Score=277.02 Aligned_cols=112 Identities=57% Similarity=0.898 Sum_probs=99.3
Q ss_pred CCCCCCCcCcccccccchhhHHHHHhhCCCc-cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 16 KDTKPVSRSHKAGLQFPVGRVARFLKKGRYA-QRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 16 ~~~~~~s~s~ragL~fPVsri~R~Lk~~~~~-~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
.+++.+|+|+|+||||||+||+|||++++++ +||+++|+|||+||||||++||||+|+|+|+++++++|+|+||++||+
T Consensus 13 ~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 13 AKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp ----CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred cCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 3446789999999999999999999999887 599999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhhcCceecCCccCCCcCccccccchhc
Q 032441 95 NDEEFSKLLGSVTIANGGVLPNIHQNLLPKKAAA 128 (140)
Q Consensus 95 nD~EL~~L~~~~~Ia~ggv~p~i~~~~~~~k~~~ 128 (140)
||+|||+||++ ||++|||+|+||++|+++|.++
T Consensus 93 nDeEL~~Ll~~-tia~ggv~P~i~~~l~~k~~~~ 125 (128)
T 1f66_C 93 GDEELDSLIKA-TIAGGGVIPHIHKSLIGKKGQQ 125 (128)
T ss_dssp HSHHHHHHCCS-EETTCCCCCCCCGGGC------
T ss_pred ccHHHhhhhcc-eecCCccCCCCCHHhcCccccc
Confidence 99999999965 9999999999999999998654
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=4.9e-37 Score=239.93 Aligned_cols=98 Identities=60% Similarity=0.959 Sum_probs=94.0
Q ss_pred CCCCcCcccccccchhhHHHHHhhCCCc-cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccH
Q 032441 19 KPVSRSHKAGLQFPVGRVARFLKKGRYA-QRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDE 97 (140)
Q Consensus 19 ~~~s~s~ragL~fPVsri~R~Lk~~~~~-~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~ 97 (140)
+.+|+|+|+||+|||+||+|||++++++ +||+++|+|||+||||||++||+|+|+|.|+++++++|+|+||++||+||+
T Consensus 94 ~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~ 173 (192)
T 2jss_A 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD 173 (192)
T ss_dssp SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH
T ss_pred ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH
Confidence 3569999999999999999999999887 699999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceecCCccCCCc
Q 032441 98 EFSKLLGSVTIANGGVLPNI 117 (140)
Q Consensus 98 EL~~L~~~~~Ia~ggv~p~i 117 (140)
|||+||+ +||++|||+|+|
T Consensus 174 eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 174 ELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHHh-hhhcCCCcCCCC
Confidence 9999996 599999999997
No 8
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.91 E-value=1.1e-25 Score=209.55 Aligned_cols=98 Identities=24% Similarity=0.448 Sum_probs=81.1
Q ss_pred CCcCcccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHH
Q 032441 21 VSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFS 100 (140)
Q Consensus 21 ~s~s~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~ 100 (140)
.|+|+||||+|||+||+|+| +++|++||+.+|||||+||||||++||||||||+|+++++.+|+|+||++|++||+||+
T Consensus 95 ~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~ 173 (1049)
T 3ksy_A 95 EKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLM 173 (1049)
T ss_dssp TTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHH
T ss_pred hcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHHH
Confidence 58999999999999999999 77899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCceecCCccCCCcCcc
Q 032441 101 KLLGSVTIANGGVLPNIHQN 120 (140)
Q Consensus 101 ~L~~~~~Ia~ggv~p~i~~~ 120 (140)
.||++. ...+|++|+....
T Consensus 174 ~l~~~d-ee~~~~lp~~~~~ 192 (1049)
T 3ksy_A 174 DMFHQD-VEDINILSLTDEE 192 (1049)
T ss_dssp HHCC----------------
T ss_pred HHHhhc-cccccCCCCcccc
Confidence 999864 4567788876544
No 9
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.90 E-value=3.6e-24 Score=151.27 Aligned_cols=82 Identities=16% Similarity=0.325 Sum_probs=62.4
Q ss_pred cCcccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhh
Q 032441 23 RSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKL 102 (140)
Q Consensus 23 ~s~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L 102 (140)
++.+++++||++||+|+||.+.+..|||.+|++|+++++|||+.||+++|++.|+++++++|+|+||.+||++|++|++|
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred cccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 46688999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q 032441 103 LG 104 (140)
Q Consensus 103 ~~ 104 (140)
++
T Consensus 84 ~d 85 (98)
T 1jfi_A 84 KA 85 (98)
T ss_dssp --
T ss_pred Hh
Confidence 94
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.81 E-value=4.8e-20 Score=129.76 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=72.3
Q ss_pred ccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhc
Q 032441 26 KAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLG 104 (140)
Q Consensus 26 ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~ 104 (140)
-.+++||++||+|+||.+.+..|||.+|++|+++++|||+.+|++.|++.|.++++++|+++||..||++|++|++|.+
T Consensus 15 ~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~d 93 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLID 93 (97)
T ss_dssp -----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred cCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHHh
Confidence 3478999999999999998889999999999999999999999999999999999999999999999999999999984
No 11
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.79 E-value=2.5e-19 Score=127.46 Aligned_cols=89 Identities=17% Similarity=0.261 Sum_probs=62.9
Q ss_pred cccCCCCCCC------CCCCCCCcCcccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032441 6 AATKGGRGRS------KDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDN 79 (140)
Q Consensus 6 ~~~~gk~gk~------~~~~~~s~s~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~ 79 (140)
||++||+||+ ++.+++++++.++ ||++.|.|+++.. ...||+.++.++|+.+|||++.+|++.|.++|+++
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA 77 (103)
T ss_dssp -------------------------------CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555543 4556778999999 9999999999998 55899999999999999999999999999999999
Q ss_pred CCceechhhHHHHHhccH
Q 032441 80 KKNRIIPRHIQLAVKNDE 97 (140)
Q Consensus 80 ~rk~ItP~hI~~AI~nD~ 97 (140)
+|++|+|+||.+|+++..
T Consensus 78 kRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 78 KRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp TCSEECHHHHHHHHHHHC
T ss_pred CCCcCcHHHHHHHHHHcC
Confidence 999999999999998653
No 12
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.79 E-value=3.6e-19 Score=126.54 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=70.5
Q ss_pred CCCCCCCcCcccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 16 KDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 16 ~~~~~~s~s~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
++.+++++++.++ ||++.|.|+++.. ...||+.++..+|+.+|||++.+|++.|.++|++++|++|+|+||.+|+++
T Consensus 17 kr~~k~~r~~~~g--ip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~ 93 (103)
T 1tzy_D 17 KRHRKVLRDNIQG--ITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 (103)
T ss_dssp ----CCCCCGGGG--SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccccchhhhccc--CCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 3556779999999 9999999999998 568999999999999999999999999999999999999999999999986
Q ss_pred c
Q 032441 96 D 96 (140)
Q Consensus 96 D 96 (140)
.
T Consensus 94 ~ 94 (103)
T 1tzy_D 94 Q 94 (103)
T ss_dssp T
T ss_pred c
Confidence 5
No 13
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.78 E-value=3.6e-19 Score=129.61 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=73.5
Q ss_pred ccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhc
Q 032441 28 GLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLG 104 (140)
Q Consensus 28 gL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~ 104 (140)
..+||++||+|+||.+.+..+|+.+|++|+++++|||+.+|+++|++.|..+++++|+|+||..||++|++|++|..
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~D 115 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLID 115 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHHH
Confidence 34699999999999998899999999999999999999999999999999999999999999999999999998864
No 14
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.72 E-value=4.6e-18 Score=127.03 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=62.6
Q ss_pred CCCcCcccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHH-HhcCCceechhhHHHHHhccHH
Q 032441 20 PVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAA-RDNKKNRIIPRHIQLAVKNDEE 98 (140)
Q Consensus 20 ~~s~s~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A-~~~~rk~ItP~hI~~AI~nD~E 98 (140)
..+++.+.+++||++||+|+||.+....+|+.+|+++++.++|||+.+|++.|++.| ...++++|++.||..||.++++
T Consensus 9 ~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~ 88 (140)
T 2byk_A 9 PVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKN 88 (140)
T ss_dssp --------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCST
T ss_pred CCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCch
Confidence 458888999999999999999999888999999999999999999999999999999 9999999999999999999999
Q ss_pred HHhhh
Q 032441 99 FSKLL 103 (140)
Q Consensus 99 L~~L~ 103 (140)
|++|.
T Consensus 89 ~dFL~ 93 (140)
T 2byk_A 89 LEFLL 93 (140)
T ss_dssp TGGGT
T ss_pred hhhHh
Confidence 99998
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.52 E-value=1.8e-14 Score=109.14 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=68.3
Q ss_pred cccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhcc
Q 032441 25 HKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKND 96 (140)
Q Consensus 25 ~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD 96 (140)
.+.++.||++.|.|+|++. +..|||++|.++|+.+||||+.+|++.|.++|++++|++|+|+||.+|++++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 3789999999999999999 8999999999999999999999999999999999999999999999999875
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.48 E-value=1.4e-13 Score=97.71 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=65.6
Q ss_pred CCCCCCCcCcccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 16 KDTKPVSRSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 16 ~~~~~~s~s~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
++.+++.+.+..+ +|.+.|.|+++.. +..|||.++...|+.+|||++.+|++.|..+|++++|++|+++||.+|++.
T Consensus 16 kr~~k~~r~~i~~--ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr 92 (102)
T 1id3_B 16 KRHRKILRDNIQG--ITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 92 (102)
T ss_dssp --------CCGGG--SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred chHHHHHHhccCC--CCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 4556667777776 7888999999997 789999999999999999999999999999999999999999999999985
Q ss_pred c
Q 032441 96 D 96 (140)
Q Consensus 96 D 96 (140)
.
T Consensus 93 ~ 93 (102)
T 1id3_B 93 Q 93 (102)
T ss_dssp T
T ss_pred c
Confidence 4
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.36 E-value=1.5e-12 Score=85.99 Aligned_cols=65 Identities=29% Similarity=0.415 Sum_probs=62.5
Q ss_pred ccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 30 QFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 30 ~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
.||.++|.|++++. +..|++.++...|..++|+++.+|++.|..+|.|.||++|+++||.+|+++
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 68999999999997 789999999999999999999999999999999999999999999999875
No 18
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.31 E-value=4.3e-12 Score=83.14 Aligned_cols=64 Identities=28% Similarity=0.431 Sum_probs=61.6
Q ss_pred ccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 30 QFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 30 ~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
.||.++|.|+|++. +..||+.+|...|..++|+++.+|.+.|...|.+++|++|+|+||.+|++
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 48999999999998 78899999999999999999999999999999999999999999999985
No 19
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.08 E-value=5.2e-10 Score=76.42 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=64.9
Q ss_pred cCcccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhcc
Q 032441 23 RSHKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKND 96 (140)
Q Consensus 23 ~s~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD 96 (140)
+.+..| +|.+.|.|+++.. +..|||.++...|+.++||++.+|++.|..+++|.+|++|+++||.+|++..
T Consensus 5 r~~~~~--ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 5 RDNIQG--ITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp GGGCCS--SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred cccCCC--CCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 444555 7888999999998 7899999999999999999999999999999999999999999999999854
No 20
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.05 E-value=3.4e-10 Score=78.43 Aligned_cols=68 Identities=15% Similarity=0.272 Sum_probs=62.7
Q ss_pred cccccchhhHHHHHhhC-CCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 27 AGLQFPVGRVARFLKKG-RYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 27 agL~fPVsri~R~Lk~~-~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
..+.||.++|.|+||+. ....||+.+|...|+.+.|.++.+|...|...|.+.+|++|+++||..|++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 36789999999999998 334799999999999999999999999999999999999999999999997
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.01 E-value=1e-09 Score=73.59 Aligned_cols=65 Identities=23% Similarity=0.311 Sum_probs=61.3
Q ss_pred ccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 30 QFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 30 ~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
.||.+.|.|+|++.-...+||.+|...|.-++|.|+.+|...|...|.++++++|+++||..|++
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 68999999999976456799999999999999999999999999999999999999999999985
No 22
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.96 E-value=1.8e-09 Score=71.89 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=62.6
Q ss_pred ccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 28 GLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 28 gL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
.-.||+..|.++.+.. +..+|++++...|+.-+||-+.||++.|.+.++|.+|++++.+||+.|++
T Consensus 4 ~s~lp~~~v~~iaes~-Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3479999999999997 78999999999999999999999999999999999999999999999974
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.95 E-value=1.5e-09 Score=82.03 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=61.6
Q ss_pred ccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHH
Q 032441 30 QFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAV 93 (140)
Q Consensus 30 ~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI 93 (140)
-||.+.|.|+||+.-+..|||.+|...|+.++|.++.+|...|.+.|.+.+||+|+++||..|+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 4899999999999866799999999999999999999999999999999999999999999998
No 24
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.89 E-value=1.8e-09 Score=79.23 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=62.3
Q ss_pred ccccchhhHHHHHhh-CCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccHHH
Q 032441 28 GLQFPVGRVARFLKK-GRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEF 99 (140)
Q Consensus 28 gL~fPVsri~R~Lk~-~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL 99 (140)
.+.||+++|.|+|++ .....+|+.+|...|+.+.|.|+.+|...|...|.+.+|++|+++||..|+....-+
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 578999999999996 334679999999999999999999999999999999999999999999999875433
No 25
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.76 E-value=2.5e-08 Score=65.97 Aligned_cols=61 Identities=18% Similarity=0.072 Sum_probs=57.9
Q ss_pred hhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 34 GRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 34 sri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
-.|+|+|++. ++.|++..++..|.-.+|-++.+|++.|..+|.|.|+++|+.+||++||+.
T Consensus 5 ~~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 3589999997 899999999999999999999999999999999999999999999999974
No 26
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.74 E-value=8.8e-09 Score=73.84 Aligned_cols=71 Identities=4% Similarity=0.010 Sum_probs=62.1
Q ss_pred ccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccHHH
Q 032441 28 GLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEF 99 (140)
Q Consensus 28 gL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL 99 (140)
.+.+|.+-|.|++++. ...|||.++...|..+++.++.+|...|..+|+|.+|++|+++||.+|++....+
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 4568999999999998 7889999999999999999999999999999999999999999999999865443
No 27
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.55 E-value=1.4e-07 Score=72.84 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=67.3
Q ss_pred cccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhh
Q 032441 25 HKAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLL 103 (140)
Q Consensus 25 ~ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~ 103 (140)
.-..+.||++.|.|+|++.-...||+.+|...|..+++-|+..|...|...|.+.+|++|+++||..|+. +-+|..++
T Consensus 10 ~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred chhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 3446789999999999998335799999999999999999999999999999999999999999999997 44444443
No 28
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=3.8e-07 Score=63.26 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=66.0
Q ss_pred ccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhcC
Q 032441 26 KAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGS 105 (140)
Q Consensus 26 ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~~ 105 (140)
++.|.+-|++|-.=.-+. ....|+.++...|+.+++..+.+|.+-+...|+|+||++|+++||.++++.++.|..++.+
T Consensus 11 Kaal~~~V~ki~~e~~~~-~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~~ 89 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSS-EDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVTQ 89 (90)
T ss_dssp HHHHHHHHHHHHHHHSCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHh-cCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhhc
Confidence 345677777776444221 2247999999999999999999999999999999999999999999999999999998864
No 29
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.40 E-value=3.8e-07 Score=65.71 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=64.0
Q ss_pred cccccchhhHHHHHhhCCCccc---cCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhh
Q 032441 27 AGLQFPVGRVARFLKKGRYAQR---VGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLL 103 (140)
Q Consensus 27 agL~fPVsri~R~Lk~~~~~~R---Vs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~ 103 (140)
+.|.+.|++|- ++. +..| ||.++...|+.+++..+.+|.+-+...|+++||++|+++||.++++.++.|..++
T Consensus 27 aal~y~V~rIv---ke~-gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l 102 (113)
T 4dra_A 27 AAVHYTVGCLC---EEV-ALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYI 102 (113)
T ss_dssp HHHHHHHHHHH---HHH-HHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHH---HHH-HHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHH
Confidence 45667666554 443 3444 9999999999999999999999999999999999999999999999999998887
Q ss_pred cC
Q 032441 104 GS 105 (140)
Q Consensus 104 ~~ 105 (140)
++
T Consensus 103 ~~ 104 (113)
T 4dra_A 103 TD 104 (113)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 30
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.34 E-value=1.3e-06 Score=58.94 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=59.4
Q ss_pred cccchhhHHHHHhhC----CCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 29 LQFPVGRVARFLKKG----RYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 29 L~fPVsri~R~Lk~~----~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
|.+|..++.|++++- ....|++++|...|.-+.|.++.++.|-+...|.|.+|.+|+|+||++|.+
T Consensus 2 lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 568888899988765 135799999999999999999999999999999999999999999999975
No 31
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.32 E-value=1e-06 Score=60.16 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=59.8
Q ss_pred cccchhhHHHHHhhCC------CccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 29 LQFPVGRVARFLKKGR------YAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 29 L~fPVsri~R~Lk~~~------~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
|.+|..++.|++++-. ...|++++|...|.-+.|.++.++.|-+...|.|.+|.+|.|+||++|.+
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 5678888999988753 36799999999999999999999999999999999999999999999975
No 32
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.31 E-value=6.9e-07 Score=63.73 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=63.8
Q ss_pred cccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhc
Q 032441 27 AGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLG 104 (140)
Q Consensus 27 agL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~ 104 (140)
+.|++-|++|-+-.-.. ...|++.+++..|+.+++.++.+|.+-+..+|+|.||++|+++||.++++.++.|...++
T Consensus 19 aal~~~V~rI~~~~g~~-~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 19 AAVHYTTGCLCQDVAED-KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh-cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 45666666655333221 135999999999999999999999999999999999999999999999999999987765
No 33
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.18 E-value=2.1e-06 Score=63.82 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=66.4
Q ss_pred ccccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhcC
Q 032441 26 KAGLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGS 105 (140)
Q Consensus 26 ragL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~~ 105 (140)
++.|++-|++|-.=.-.. ....|+.++...|+.+++.++.+|..-+..+|+|.||++|+++||.++++.++.|..++.+
T Consensus 18 KaAl~y~VgkIvee~~~~-~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~ 96 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAED-KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 345677777776433222 1347999999999999999999999999999999999999999999999999999998864
No 34
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.15 E-value=3.9e-06 Score=59.17 Aligned_cols=68 Identities=24% Similarity=0.168 Sum_probs=58.1
Q ss_pred cccccchhhHHHHHhhCC-------CccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 27 AGLQFPVGRVARFLKKGR-------YAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 27 agL~fPVsri~R~Lk~~~-------~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
..|.+|..+|.|++++-. ...|++++|...|.-+.|.++-+++|-+...|.|.++.+|.|.||++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 478899999999998753 15699999999999999999999999999999999999999999999974
No 35
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.13 E-value=4.4e-06 Score=62.14 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=61.8
Q ss_pred cccccchhhHHHHHhhCC------CccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 27 AGLQFPVGRVARFLKKGR------YAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 27 agL~fPVsri~R~Lk~~~------~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
..|.+|..+|.|++++-. ...|++++|...|.-+.|.++.+++|-+...|.|.++.+|+|+||++|.+
T Consensus 58 t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 58 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp -CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 478899999999998753 35799999999999999999999999999999999999999999999975
No 36
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.10 E-value=3.7e-06 Score=63.50 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=62.6
Q ss_pred cccccchhhHHHHHhhCC------CccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhcc
Q 032441 27 AGLQFPVGRVARFLKKGR------YAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKND 96 (140)
Q Consensus 27 agL~fPVsri~R~Lk~~~------~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD 96 (140)
..|.||...|.|++++-. ...|++.+|...|.-+.|.++.+++|-|...|.+.++.+|+|+||++|.+--
T Consensus 74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr 149 (156)
T 3r45_A 74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 149 (156)
T ss_dssp -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence 468899999999998753 3569999999999999999999999999999999999999999999998643
No 37
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=8.9e-06 Score=59.14 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=49.2
Q ss_pred CCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 44 RYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 44 ~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
.++.|||+++-..+..+||.++.+|+.-|..++.+.+||+|+++||.+|++.
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999999863
No 38
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.08 E-value=7.6e-06 Score=59.84 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=60.0
Q ss_pred ccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 28 GLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 28 gL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
.-.|.+ .|+|+|++-.....||..|...|...++.+...|...|...++.+++++|++++|+.|++
T Consensus 35 ~esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 35 KESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 345665 799999998556699999999999999999999999999999999999999999999996
No 39
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.08 E-value=3.2e-06 Score=67.59 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=55.4
Q ss_pred HHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 36 VARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 36 i~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
+.|+.+.+ ++.|||.++...+..+||.++.+|+.-|..+|.+++||+|+++||.+|++.
T Consensus 167 ~~RlaRrg-GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 167 DEEDGDKG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp CCTTSCCT-TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred HHHHhhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 45888887 899999999999999999999999999999999999999999999999874
No 40
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.02 E-value=1.3e-05 Score=59.35 Aligned_cols=67 Identities=22% Similarity=0.224 Sum_probs=61.0
Q ss_pred ccccchhhHHHHHhhC----CCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 28 GLQFPVGRVARFLKKG----RYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 28 gL~fPVsri~R~Lk~~----~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
.|.+|..+|.|++++- ....|++++|...|.-+.|.++.+++|.+...|.|.++.+|.|+||++|.+
T Consensus 60 ~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp SCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 6789999999998875 135799999999999999999999999999999999999999999999975
No 41
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.97 E-value=1.5e-05 Score=58.07 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=58.4
Q ss_pred ccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 30 QFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 30 ~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
.|. ..|+|+|++-.....||..|...|...++.+...|...|...++.+++++|++++|+.|++
T Consensus 34 sy~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 34 SYA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp CSH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred hHH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 344 5789999998556699999999999999999999999999999999999999999999996
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.46 E-value=0.00023 Score=55.01 Aligned_cols=61 Identities=25% Similarity=0.256 Sum_probs=56.8
Q ss_pred hhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 34 GRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 34 sri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
..|+|+|++......|+.+|..+|...+..++..|...|...+..+++++||++||+.|++
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 3689999998666799999999999999999999999999999999999999999999997
No 43
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.05 E-value=0.0014 Score=44.95 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=55.6
Q ss_pred ccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceechhhHHHHHh
Q 032441 30 QFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDN-KKNRIIPRHIQLAVK 94 (140)
Q Consensus 30 ~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~-~rk~ItP~hI~~AI~ 94 (140)
.||-..|+|++..- ....|+.+..+.|+++--.++.||.|.|....... ....|.|.||+.|.+
T Consensus 16 ~f~k~~vKrl~~~~-~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQSI-TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 57777899999876 67799999999999999999999999998887664 456899999999975
No 44
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=96.55 E-value=0.0088 Score=40.71 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=57.0
Q ss_pred cccccchhhHHHHHhhCCC--ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHH
Q 032441 27 AGLQFPVGRVARFLKKGRY--AQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAV 93 (140)
Q Consensus 27 agL~fPVsri~R~Lk~~~~--~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI 93 (140)
++..||..-|.|+|+..-- .-||+.+|...++..|+-|+.|-+-+|...|...+...|..+||+...
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 4668999999999996532 239999999999999999999999999999988888889999998743
No 45
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=96.51 E-value=0.0084 Score=40.47 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=57.0
Q ss_pred ccccchhhHHHHHhhCCC--ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHH
Q 032441 28 GLQFPVGRVARFLKKGRY--AQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLA 92 (140)
Q Consensus 28 gL~fPVsri~R~Lk~~~~--~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~A 92 (140)
.-.||..-|.|+|+.... ..||+.+|...++..|+-|+.|-+.+|...|...+...|..+||+..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 457999999999997532 23999999999999999999999999999998888889999999874
No 46
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.36 E-value=0.075 Score=35.36 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=60.1
Q ss_pred ccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 30 QFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 30 ~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
.|+-.++..++++-.....+..++-..|..+.+-|+..+++.|+..|++-+..++.+.||++....
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 567788899998876778999999999999999999999999999999999999999999988754
No 47
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.065 Score=42.70 Aligned_cols=66 Identities=24% Similarity=0.150 Sum_probs=54.0
Q ss_pred ccccchhhHHHHHhhCC----C---ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHH
Q 032441 28 GLQFPVGRVARFLKKGR----Y---AQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAV 93 (140)
Q Consensus 28 gL~fPVsri~R~Lk~~~----~---~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI 93 (140)
.|.+|-.+|.|+.++-. . ..|..++|...|--+-|.++-.++|-+.--|.+.++-+|.|.||++|-
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLar 81 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLAR 81 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHH
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHH
Confidence 56777777777765421 1 358999999999999999999999999888999999999999999994
No 48
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=91.68 E-value=0.41 Score=35.59 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=53.4
Q ss_pred ccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHH
Q 032441 30 QFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQ 90 (140)
Q Consensus 30 ~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~ 90 (140)
.+++.+++|+++.. ..--|..+-.--+..++|--+.+++..|-..|+.+||..|.|.|+-
T Consensus 2 vm~~~~~e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLP 61 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLP 61 (148)
T ss_dssp CSCHHHHHHHHHHH-HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSC
T ss_pred cCCHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC
Confidence 47889999999997 4557888888889999999999999999999999999999999964
No 49
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=89.45 E-value=0.5 Score=32.92 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhc
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLG 104 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~ 104 (140)
+.++++.|-+.|...+...|+|+||-+|+-.|++...++.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 4678999999999999999999999999988877666654
No 50
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=85.37 E-value=0.56 Score=35.60 Aligned_cols=60 Identities=10% Similarity=0.071 Sum_probs=53.8
Q ss_pred ccchhhHHHHHhhCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHH
Q 032441 30 QFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQ 90 (140)
Q Consensus 30 ~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~ 90 (140)
.+++.+++|+++.. ..--|..+-.--+..++|--+.++|..|-..|+.+||..|.|.||-
T Consensus 26 vmg~~kferlFR~a-agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLP 85 (171)
T 1r4v_A 26 PKGFDKLDHYFRTE-LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLN 85 (171)
T ss_dssp CTTHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSC
T ss_pred cCChHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC
Confidence 88999999999997 4557778888888999999999999999999999999999999964
No 51
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=84.86 E-value=0.95 Score=31.72 Aligned_cols=40 Identities=35% Similarity=0.336 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccHH--HHhhhc
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEE--FSKLLG 104 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~E--L~~L~~ 104 (140)
+.++++.|-+.|...+...|+|+||-+|+-.+++ ...++.
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHH
Confidence 4678899999999999999999999999976553 444443
No 52
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=84.80 E-value=0.78 Score=32.46 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccH--HHHhhhc
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDE--EFSKLLG 104 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~--EL~~L~~ 104 (140)
+.++++.|.+.|...+...|+|+||-+|+-.|+ ....++.
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 468899999999999999999999999998654 3444443
No 53
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=84.56 E-value=1.1 Score=31.27 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccH
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDE 97 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~ 97 (140)
+.++++.|-+.|...+...|+|+||-+|+-.|+
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 457889999999999999999999999997665
No 54
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=82.43 E-value=0.97 Score=31.92 Aligned_cols=40 Identities=33% Similarity=0.294 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhcc--HHHHhhhc
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKND--EEFSKLLG 104 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD--~EL~~L~~ 104 (140)
+.++|+.|.+.|...+...|+|+||-+|+-.| .....++.
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 52 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALE 52 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHH
Confidence 46788999999999999999999999999765 34455553
No 55
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=80.83 E-value=1.5 Score=30.99 Aligned_cols=40 Identities=38% Similarity=0.474 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccHH--HHhhhc
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEE--FSKLLG 104 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~E--L~~L~~ 104 (140)
+.++|+.|...|...+...|+++||-+|+-.|++ ...+++
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 4578899999999999999999999999986543 455554
No 56
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=79.92 E-value=7.5 Score=26.36 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=38.9
Q ss_pred cchhhHHHHHhhCCCc--cccCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032441 31 FPVGRVARFLKKGRYA--QRVGSGSPVYLSAVLEYLAAEVLELAGNAARD 78 (140)
Q Consensus 31 fPVsri~R~Lk~~~~~--~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~ 78 (140)
+|..-+.|+|....-. -||+.+|...++..++-|+.|-+-+|......
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778899999854222 29999999999999999999999999655444
No 57
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=79.92 E-value=2 Score=30.18 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccH--HHHhhhc
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDE--EFSKLLG 104 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~--EL~~L~~ 104 (140)
+.++|+.|...|...+...|+++||-+|+-.|+ ....+++
T Consensus 86 ~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 86 AKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 357888999999999999999999999998654 4555654
No 58
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=79.20 E-value=1.9 Score=31.84 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=36.4
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHhcCCceechhhHHHHHhccH--HHHhhh
Q 032441 56 YLSAVLEYLA---AEVLELAGNAARDNKKNRIIPRHIQLAVKNDE--EFSKLL 103 (140)
Q Consensus 56 yLaAvLEyl~---~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~--EL~~L~ 103 (140)
.+...++-|+ .++|+.|.+.|...+...|.|+||-+|+-.|+ ....++
T Consensus 17 ~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL 69 (171)
T 3zri_A 17 ELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVL 69 (171)
T ss_dssp CHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHH
T ss_pred hHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHH
Confidence 3445555543 57888999999999999999999999998764 344444
No 59
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=74.39 E-value=3.3 Score=28.59 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccHH--HHhhhc
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEE--FSKLLG 104 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~E--L~~L~~ 104 (140)
+.++|+.|...|...+...|.++||-+|+-.|++ ...++.
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~ 125 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLR 125 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHH
Confidence 4578899999999999999999999999986653 344443
No 60
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=72.89 E-value=5.5 Score=27.50 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhc-cHHHHhhhc
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKN-DEEFSKLLG 104 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~n-D~EL~~L~~ 104 (140)
+..+|+.|...|...+...|+++||-+|+-. |.....++.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 5678899999999889999999999999984 334455554
No 61
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=72.86 E-value=4.1 Score=30.07 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHH-hcCCceechhhHHHHHhccH
Q 032441 66 AEVLELAGNAAR-DNKKNRIIPRHIQLAVKNDE 97 (140)
Q Consensus 66 ~EILelA~n~A~-~~~rk~ItP~hI~~AI~nD~ 97 (140)
.++|+.|...|. ..+...|.++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 578899999999 99999999999999999887
No 62
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=68.71 E-value=3.8 Score=28.48 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccH
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDE 97 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~ 97 (140)
+.++|+.|...|...+...|+++||-+|+-.|+
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 457889999999999999999999999997654
No 63
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=64.51 E-value=27 Score=26.95 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=45.5
Q ss_pred hhhHHHHHhhC----CCccccCCChHHHHHHHHH------HHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 33 VGRVARFLKKG----RYAQRVGSGSPVYLSAVLE------YLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 33 Vsri~R~Lk~~----~~~~RVs~~A~vyLaAvLE------yl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
...+..+++.. .....++.++..+++.... ..+..+++.+...|...+...|+.+|++.++.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 35555566532 1224678888888887777 45668888888888887888999999998875
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.33 E-value=9 Score=33.72 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhc
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLG 104 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~ 104 (140)
+.++|+.|-+.|...+...|+|+||-+|+-.|++...++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 4678899999999999999999999999998877766664
No 65
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=61.24 E-value=24 Score=26.40 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhcC
Q 032441 59 AVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGS 105 (140)
Q Consensus 59 AvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~~ 105 (140)
+.+. .+.++++.-...-...|.+-|+|.++..-|..|.|-..+|..
T Consensus 71 ~y~~-kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~ 116 (165)
T 2vxz_A 71 QYRQ-LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSS 116 (165)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHH
Confidence 3444 677777777777778999999999999999999999999975
No 66
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=51.21 E-value=23 Score=21.99 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=17.1
Q ss_pred HHHHHHhcCCceechhhHHHHHh
Q 032441 72 AGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 72 A~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
|...|...+...|+.+|+..|+.
T Consensus 49 A~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 49 AGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHH
Confidence 33444455778999999999985
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=48.53 E-value=14 Score=30.81 Aligned_cols=39 Identities=33% Similarity=0.300 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccH--HHHhhh
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDE--EFSKLL 103 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~--EL~~L~ 103 (140)
+.++|+.|-..|...+...|+|+||-+++-.++ ....++
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL 50 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 467889999999999999999999999997653 344444
No 68
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=48.23 E-value=43 Score=25.63 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=41.2
Q ss_pred hhHHHHHhh----CCCccccCCChHHHHHHHHH------HHHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 34 GRVARFLKK----GRYAQRVGSGSPVYLSAVLE------YLAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 34 sri~R~Lk~----~~~~~RVs~~A~vyLaAvLE------yl~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
..+..+|+. .....-++.++.-+++.... ..+.++++.+...|...+...|+.+|++.++..
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 200 EELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp HHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 445556654 21123566677777776665 234457778887787778889999999988754
No 69
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=47.71 E-value=33 Score=26.32 Aligned_cols=47 Identities=11% Similarity=-0.053 Sum_probs=34.2
Q ss_pred ccCCChHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 48 RVGSGSPVYLSAVLEY-------LAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 48 RVs~~A~vyLaAvLEy-------l~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
.++.++..||+....- -+..++++|...|...++..|+++|+..++.
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 5677776666655443 2346777778888778888999999998874
No 70
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=47.31 E-value=56 Score=25.27 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=41.0
Q ss_pred hhHHHHHhhCC--CccccCCChHHHHHHHHH-H---HHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 34 GRVARFLKKGR--YAQRVGSGSPVYLSAVLE-Y---LAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 34 sri~R~Lk~~~--~~~RVs~~A~vyLaAvLE-y---l~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
..+..+|+... ....++.++..+|+..-+ . .+..+++.|...|...++..|+.+|++.++..
T Consensus 262 ~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 262 KDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 44555555321 123577777777776665 2 23456777777777788899999999999864
No 71
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=46.12 E-value=14 Score=30.82 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccHH
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEE 98 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~E 98 (140)
+.++|+.|...|...+...|.++||-+|+-.|++
T Consensus 84 ~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 4577899999999999999999999999987654
No 72
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=44.06 E-value=8.4 Score=19.99 Aligned_cols=9 Identities=22% Similarity=0.627 Sum_probs=7.1
Q ss_pred ccCCCCCCC
Q 032441 7 ATKGGRGRS 15 (140)
Q Consensus 7 ~~~gk~gk~ 15 (140)
|++||+||+
T Consensus 2 sgrgkggkg 10 (26)
T 4gqb_C 2 SGRGKGGKG 10 (26)
T ss_pred CCCCcCCcc
Confidence 678888876
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=43.23 E-value=18 Score=31.87 Aligned_cols=32 Identities=34% Similarity=0.351 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhcc
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKND 96 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD 96 (140)
+.++++.|-+.|...+...|+|+||-+|+-.+
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVRE 41 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhc
Confidence 46788999999999999999999999999765
No 74
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=41.39 E-value=45 Score=20.88 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=31.1
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 47 QRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 47 ~RVs~~A~vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
..+...+.-|-.|=|+.++.|-...|. ..++..|+.+|+..|+..
T Consensus 23 ~~lA~~t~G~SGADi~~l~~eAa~~ai----~~~~~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 23 DSLIIRNDSLSGAVIAAIMQEAGLRAV----RKNRYVILQSDLEEAYAT 67 (82)
T ss_dssp TTTTTSSCCCCHHHHHHHHHHHHHHHH----HTTCSEECHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH----HhccCCcCHHHHHHHHHH
Confidence 355555666777777777766554443 346678999999998854
No 75
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=39.17 E-value=79 Score=20.64 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHHh------ccHHHHhhhcCceecCCccC
Q 032441 66 AEVLELAGNAARDNKKNRIIPRHIQLAVK------NDEEFSKLLGSVTIANGGVL 114 (140)
Q Consensus 66 ~EILelA~n~A~~~~rk~ItP~hI~~AI~------nD~EL~~L~~~~~Ia~ggv~ 114 (140)
.+-+..+.+....++...|+.+++..++. .++++..+|........|.+
T Consensus 95 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i 149 (161)
T 3fwb_A 95 LDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEI 149 (161)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCSSSSSSE
T ss_pred HHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcC
Confidence 34455555555556777899999999886 56788888876544444443
No 76
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.38 E-value=22 Score=31.31 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccHH
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEE 98 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~E 98 (140)
+.++|+.|...|...+...|.++||-+|+-.|++
T Consensus 84 ~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 4578899999999999999999999999986654
No 77
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=37.37 E-value=70 Score=27.43 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 66 AEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 66 ~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
..+++.|...|...++..|+++|+..|+..
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 357888888888889999999999999964
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=35.83 E-value=29 Score=31.14 Aligned_cols=34 Identities=29% Similarity=0.221 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccHH
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEE 98 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~E 98 (140)
+.++|+.|-+.|...+...|+|+||-+|+-.+++
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~ 43 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDER 43 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCC
Confidence 4678899999999999999999999999976543
No 79
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=35.52 E-value=58 Score=21.13 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc-eechhhHHHHHhc-----------cHHHHhhhcCceecCCcc
Q 032441 61 LEYLAAEVLELAGNAARDNKKN-RIIPRHIQLAVKN-----------DEEFSKLLGSVTIANGGV 113 (140)
Q Consensus 61 LEyl~~EILelA~n~A~~~~rk-~ItP~hI~~AI~n-----------D~EL~~L~~~~~Ia~ggv 113 (140)
||.-+.+|.+.=-.+....|.. .|+.+.+...+.. +.++..+++....-+-|.
T Consensus 6 le~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~ 70 (98)
T 3n22_A 6 LEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQ 70 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSSS
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCCC
Confidence 4555555555434444345554 8999999998864 678889987554455454
No 80
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=34.28 E-value=31 Score=30.25 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccHH
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEE 98 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~E 98 (140)
+..+|+.|...|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 1r6b_X 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (758)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCEeeHHHHHHHHhcccc
Confidence 4678899999999989999999999999987653
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=32.14 E-value=32 Score=29.85 Aligned_cols=47 Identities=9% Similarity=0.169 Sum_probs=35.6
Q ss_pred ccCCChHHHHHHHHHHH------------------HHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 48 RVGSGSPVYLSAVLEYL------------------AAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 48 RVs~~A~vyLaAvLEyl------------------~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
.++..|..+|......+ +..++.+|...|.-.++..|+++|+..|+.
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 67777776665543321 346788888889889999999999999985
No 82
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=30.84 E-value=56 Score=24.10 Aligned_cols=27 Identities=15% Similarity=0.035 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 68 VLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 68 ILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
+++.|...|...++..|+.+|++.|+.
T Consensus 224 l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 224 LVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 444555556666778899999999885
No 83
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=30.40 E-value=1.5e+02 Score=22.68 Aligned_cols=60 Identities=18% Similarity=0.126 Sum_probs=38.0
Q ss_pred hhHHHHHhhC----CCccccCCChHHHHHHHHH------HHHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 34 GRVARFLKKG----RYAQRVGSGSPVYLSAVLE------YLAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 34 sri~R~Lk~~----~~~~RVs~~A~vyLaAvLE------yl~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
..+..+|+.. .....++.++..+++.... ..+.++++.|+..|. +...|+.+|+..++..
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHH
Confidence 4555666542 1123567766666666554 124467777777765 5678999999988753
No 84
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=30.34 E-value=73 Score=20.35 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 55 VYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 55 vyLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
-|-.|=|+.|+.|-...| .......|+.+|+..|+.
T Consensus 44 G~SGADL~~l~~eAa~~a----lr~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 44 GASGAEVKGVCTEAGMYA----LRERRVHVTQEDFEMAVA 79 (86)
T ss_dssp SCCHHHHHHHHHHHHHHH----HHTTCSEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH----HHHcCCCCCHHHHHHHHH
Confidence 344455555555444333 334567899999999985
No 85
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=30.33 E-value=98 Score=26.93 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=48.7
Q ss_pred ccchhhHHHHHhhCC---CccccCCChHHHHHHHHHHHH---------------------HHHHHHHHHHHHhcCCceec
Q 032441 30 QFPVGRVARFLKKGR---YAQRVGSGSPVYLSAVLEYLA---------------------AEVLELAGNAARDNKKNRII 85 (140)
Q Consensus 30 ~fPVsri~R~Lk~~~---~~~RVs~~A~vyLaAvLEyl~---------------------~EILelA~n~A~~~~rk~It 85 (140)
.++...+.+++...+ ...++++.+..||......+= .-++.+|-..|.-.++..++
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 355566666554332 345788888888776654431 12566777778889999999
Q ss_pred hhhHHHHHhccHHHHhhhcCceecCCccC
Q 032441 86 PRHIQLAVKNDEEFSKLLGSVTIANGGVL 114 (140)
Q Consensus 86 P~hI~~AI~nD~EL~~L~~~~~Ia~ggv~ 114 (140)
|+|++.|+.-=+ ..|.+-.+.+.+|.+
T Consensus 473 ~eDV~~Ai~L~~--~Sl~~~a~dp~tg~i 499 (506)
T 3f8t_A 473 PEDVDIAAELVD--WYLETAMQIPGGDEI 499 (506)
T ss_dssp HHHHHHHHHHHH--HHHHHTTC-------
T ss_pred HHHHHHHHHHHH--HHHHHhcCCCCCCeE
Confidence 999999995221 234444455666654
No 86
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=29.62 E-value=71 Score=21.03 Aligned_cols=52 Identities=10% Similarity=0.159 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-ceechhhHHHHHhc-----------cHHHHhhhcCceecCCc
Q 032441 61 LEYLAAEVLELAGNAARDNKK-NRIIPRHIQLAVKN-----------DEEFSKLLGSVTIANGG 112 (140)
Q Consensus 61 LEyl~~EILelA~n~A~~~~r-k~ItP~hI~~AI~n-----------D~EL~~L~~~~~Ia~gg 112 (140)
||.=+.+|.+.=-.+....|. -.|+...+...+.. ++|+..+++.+..-+.|
T Consensus 5 le~~i~~l~~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG 68 (101)
T 3nso_A 5 LEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDC 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCC
Confidence 455555555544444433443 68999999998874 67889998754444444
No 87
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=28.76 E-value=66 Score=20.49 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 58 SAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 58 aAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
.|=|+.|+.|-. ..|...+...|+.+|+..|+.
T Consensus 37 GADl~~l~~eAa----~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 37 GAELRSVCTEAG----MFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp HHHHHHHHHHHH----HHHHHHSCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHhccccCCHHHHHHHHH
Confidence 334444444433 333344667899999999985
No 88
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=28.24 E-value=54 Score=20.35 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=14.2
Q ss_pred HHhcCCceechhhHHHHHh
Q 032441 76 ARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 76 A~~~~rk~ItP~hI~~AI~ 94 (140)
|...+...|+.+|+..|+.
T Consensus 51 a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 51 AVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp GGTSCCSSBCHHHHHHHHH
T ss_pred HHHhccCCcCHHHHHHHHH
Confidence 3444567799999998875
No 89
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=27.89 E-value=66 Score=23.90 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 66 AEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 66 ~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
..++..|...|...++..|+++|++.|+..
T Consensus 228 ~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 228 KAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 345555666666778889999999999853
No 90
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=26.23 E-value=1.2e+02 Score=20.93 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhcC
Q 032441 66 AEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGS 105 (140)
Q Consensus 66 ~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~~ 105 (140)
.+.++........++...|+.+.+...+.+++++..++..
T Consensus 130 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~ 169 (198)
T 2r2i_A 130 EEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTR 169 (198)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHTTCHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCHHHHHHHhc
Confidence 3455666666666777899999999999999999999873
No 91
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=24.60 E-value=68 Score=23.57 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCCceechhhHHHHH
Q 032441 67 EVLELAGNAARDNKKNRIIPRHIQLAV 93 (140)
Q Consensus 67 EILelA~n~A~~~~rk~ItP~hI~~AI 93 (140)
.+++.|...|...++..|+.+|++.|+
T Consensus 227 ~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 227 NLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 344445555556667789999998875
No 92
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=24.49 E-value=66 Score=24.14 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCceechhhHHHHH
Q 032441 67 EVLELAGNAARDNKKNRIIPRHIQLAV 93 (140)
Q Consensus 67 EILelA~n~A~~~~rk~ItP~hI~~AI 93 (140)
.+++.|...|...++..|+.+|++.|+
T Consensus 251 ~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 251 NLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 344555555555667789999998876
No 93
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=24.35 E-value=17 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 66 AEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 66 ~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
...|.||...|.-++.. |+..||+.|-.
T Consensus 50 tktLrLA~m~A~G~g~~-i~~~~I~~A~~ 77 (91)
T 1f6v_A 50 NHSLRLAAMTAHGKGER-VNEDYLRQAFR 77 (91)
T ss_dssp HHHHGGGTCTTCTTSCC-SSHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 45568888888777766 99999999986
No 94
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=23.69 E-value=84 Score=21.42 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhcCceecCCc
Q 032441 69 LELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGSVTIANGG 112 (140)
Q Consensus 69 LelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~~~~Ia~gg 112 (140)
++.+......++...|+.+.+...+..++++..+| ......-|
T Consensus 149 ~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~-~~D~~~dG 191 (193)
T 1bjf_A 149 TEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLL-QCDPSSAG 191 (193)
T ss_dssp HHHHHHHSCTTCSSEECHHHHHHHHHHCTHHHHTT-CC------
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHhcCHHHHHHh-ccCCCCCC
Confidence 44444545556777899999999999999999998 64433333
No 95
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=23.45 E-value=2.1e+02 Score=21.79 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=38.0
Q ss_pred hhHHHHHhhCCC----ccccCCChHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 34 GRVARFLKKGRY----AQRVGSGSPVYLSAVL------------EYLAAEVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 34 sri~R~Lk~~~~----~~RVs~~A~vyLaAvL------------Eyl~~EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
..+..+++.... ...++.++..+++... =..+.+++..|...|...+...|+.+|+..++.
T Consensus 196 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 196 DQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp HHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 455566654311 1245555555555544 123467777788778777888899999998765
No 96
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=23.31 E-value=1.6e+02 Score=20.38 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhcC
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLGS 105 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~~ 105 (140)
..+.++........++...|+.+++...+.+++++..++..
T Consensus 146 ~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~ 186 (204)
T 1jba_A 146 PEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKMLQM 186 (204)
T ss_dssp HHHHHHHHHHHHCCSCCSCBCHHHHHHHHTTTTTHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHHHHHHHHcChHHHHHHHh
Confidence 34556666666666777789999999999999999999963
No 97
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=22.70 E-value=70 Score=26.29 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=41.4
Q ss_pred hhhHHHHHhhCCC--ccccCCChHHHHHHHH-HH---HHHHHHHHHHHHHHhcCCceechhhHHHHHhc
Q 032441 33 VGRVARFLKKGRY--AQRVGSGSPVYLSAVL-EY---LAAEVLELAGNAARDNKKNRIIPRHIQLAVKN 95 (140)
Q Consensus 33 Vsri~R~Lk~~~~--~~RVs~~A~vyLaAvL-Ey---l~~EILelA~n~A~~~~rk~ItP~hI~~AI~n 95 (140)
...+..||+.... ...++.++..+++..- +- .+-.+++.|...|...++..|+++|++.++.-
T Consensus 368 ~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 368 PQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 3566677764311 1245666666665543 21 34567777888888889999999999998763
No 98
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=22.41 E-value=95 Score=23.74 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCceechhhHHHHHh
Q 032441 67 EVLELAGNAARDNKKNRIIPRHIQLAVK 94 (140)
Q Consensus 67 EILelA~n~A~~~~rk~ItP~hI~~AI~ 94 (140)
.++.+|...|.-.++..|+++|+..++.
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4566777777778888999999998874
No 99
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=21.18 E-value=60 Score=29.09 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHHhccH
Q 032441 65 AAEVLELAGNAARDNKKNRIIPRHIQLAVKNDE 97 (140)
Q Consensus 65 ~~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~ 97 (140)
+..+|+.|...|...+...|.++||-+|+-.++
T Consensus 87 ~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~ 119 (854)
T 1qvr_A 87 LSGALNRAEGLMEELKDRYVAVDTLVLALAEAT 119 (854)
T ss_dssp HHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhcc
Confidence 457889999999999999999999999998654
No 100
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=20.97 E-value=1.6e+02 Score=21.20 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhc
Q 032441 67 EVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLG 104 (140)
Q Consensus 67 EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~ 104 (140)
+.++...+....++...|+-+.+...+.+++.+...|+
T Consensus 173 ~~~~~~f~~~D~d~dG~Is~~EF~~~~~~~~~l~~~l~ 210 (224)
T 1s1e_A 173 QHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQ 210 (224)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHhCHHHHHHhc
Confidence 44455555555567778999999999999999888886
No 101
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=20.91 E-value=1.5e+02 Score=18.27 Aligned_cols=53 Identities=13% Similarity=0.253 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CceechhhHHHHHhc-----------cHHHHhhhcCceecCCcc
Q 032441 61 LEYLAAEVLELAGNAARDNK-KNRIIPRHIQLAVKN-----------DEEFSKLLGSVTIANGGV 113 (140)
Q Consensus 61 LEyl~~EILelA~n~A~~~~-rk~ItP~hI~~AI~n-----------D~EL~~L~~~~~Ia~ggv 113 (140)
||.-+.+|.+.=-......| ...|+.+.+...+.. +.++..+|+.......|.
T Consensus 4 le~~~~~l~~~F~~~D~~dG~~g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~ 68 (92)
T 3rm1_A 4 LEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGE 68 (92)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSS
T ss_pred HHHHHHHHHHHHHHHccCCCCcCeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCC
Confidence 34444455444344442223 348999999988876 567788876544444443
No 102
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=20.65 E-value=1.2e+02 Score=22.28 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHH---HHH-hccHHHHhhhcCceecCCcc
Q 032441 56 YLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQ---LAV-KNDEEFSKLLGSVTIANGGV 113 (140)
Q Consensus 56 yLaAvLEyl~~EILelA~n~A~~~~rk~ItP~hI~---~AI-~nD~EL~~L~~~~~Ia~ggv 113 (140)
-+..+|+.+-.++..+....|......+|++++++ ..| ..+++|. ++..++++|+.
T Consensus 51 ~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~~lp--l~~FILPgg~~ 110 (172)
T 1wy1_A 51 EMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIKWLEGLISRYEEMVN--LKSFVLPGGTL 110 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSCCCCHHHHHHHHHHHHHHHTTCS--CCSSCCSCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHhhhCC--CcCeEECCCCH
Confidence 47778888888888888888765433468888876 233 2344444 45566676653
No 103
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=20.26 E-value=1.8e+02 Score=20.47 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHHhccHHHHhhhc
Q 032441 66 AEVLELAGNAARDNKKNRIIPRHIQLAVKNDEEFSKLLG 104 (140)
Q Consensus 66 ~EILelA~n~A~~~~rk~ItP~hI~~AI~nD~EL~~L~~ 104 (140)
.+.++.....+..++...|+.+++...+..++++..+|.
T Consensus 134 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~ 172 (211)
T 2ggz_A 134 EEFINLVFHKIDINNDGELTLEEFINGMAKDQDLLEIVY 172 (211)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHhCHHHHHHHh
Confidence 355666666666677778999999999999999999987
No 104
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=20.18 E-value=1.6e+02 Score=18.62 Aligned_cols=53 Identities=9% Similarity=0.131 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-ceechhhHHHHHhc-----------cHHHHhhhcCceecCCcc
Q 032441 61 LEYLAAEVLELAGNAARDNKK-NRIIPRHIQLAVKN-----------DEEFSKLLGSVTIANGGV 113 (140)
Q Consensus 61 LEyl~~EILelA~n~A~~~~r-k~ItP~hI~~AI~n-----------D~EL~~L~~~~~Ia~ggv 113 (140)
||.-+.+|.+.=-.+....|. -.|+.+.+...+.. ++++..+++.+..-+.|.
T Consensus 5 le~~~~~l~~~F~~fd~~dg~~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~ 69 (93)
T 4eto_A 5 LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNE 69 (93)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSS
T ss_pred HHHHHHHHHHHHHHHcccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCC
Confidence 455555555544444433443 48999999998863 568888887544444443
No 105
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=20.06 E-value=1.3e+02 Score=19.10 Aligned_cols=83 Identities=11% Similarity=0.119 Sum_probs=48.3
Q ss_pred ccccchhhHHHHHhhCCCccccCCChHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCceechhhHHHHHh------cc
Q 032441 28 GLQFPVGRVARFLKKGRYAQRVGSGSPVYLSAVLEYL-----AAEVLELAGNAARDNKKNRIIPRHIQLAVK------ND 96 (140)
Q Consensus 28 gL~fPVsri~R~Lk~~~~~~RVs~~A~vyLaAvLEyl-----~~EILelA~n~A~~~~rk~ItP~hI~~AI~------nD 96 (140)
|+.++-..+..++.. ....+|+- ..|+..+...+ ..+.+..+-+....++...|+.+++..++. .+
T Consensus 35 ~~~~~~~~~~~~~~~-~~~g~i~~--~eF~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~ 111 (145)
T 2bl0_B 35 GKNPTNAELNTIKGQ-LNAKEFDL--ATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTS 111 (145)
T ss_dssp TCCCCHHHHHHHHHH-HTSSEECH--HHHHHHHTSCCCCGGGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSSSCCCH
T ss_pred CCCCCHHHHHHHHHh-cCCCeEcH--HHHHHHHHHHhhcCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcCCCCCH
Confidence 344555566666665 23345543 34444333221 234455555555556777899999998874 56
Q ss_pred HHHHhhhcCceecCCcc
Q 032441 97 EEFSKLLGSVTIANGGV 113 (140)
Q Consensus 97 ~EL~~L~~~~~Ia~ggv 113 (140)
+++..+|........|.
T Consensus 112 ~~~~~~~~~~d~~~dg~ 128 (145)
T 2bl0_B 112 SEVEELMKEVSVSGDGA 128 (145)
T ss_dssp HHHHHHHTTCCCCTTSE
T ss_pred HHHHHHHHHcCCCCCCc
Confidence 78888887644444443
Done!