BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032442
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BW3|A Chain A, Three-Dimensional Structure In Solution Of Barwin, A
Protein From Barley Seed
pdb|1BW4|A Chain A, Three-Dimensional Structure In Solution Of Barwin, A
Protein From Barley Seed
Length = 125
Score = 158 bits (399), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 94/125 (75%), Gaps = 5/125 (4%)
Query: 21 QSASNVRATSHSYNPEQHGWDLNA--VGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQ 78
+ A++VRAT H Y P Q+ WDL A V AYC+T DA+KPL+WR KYGWTAFCGP GPRGQ
Sbjct: 1 EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60
Query: 79 AACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLD-AGVFRQLV--GRDNSQNQLIVNYQF 135
AACGKCLRVTN TGAQ+T RIVDQC+NGGLDLD VF ++ G Q L VNYQF
Sbjct: 61 AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120
Query: 136 VNCGD 140
V+C D
Sbjct: 121 VDCRD 125
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 35 PEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTA-FCGPVGPRGQ 78
P HG L+A + T KP+ + GWTA F G V P Q
Sbjct: 1264 PIVHGMWLSAAAQHVVTATDGKPVPPAKLIGWTARFLGMVKPGDQ 1308
>pdb|1BGQ|A Chain A, Radicicol Bound To The Atp Binding Site Of The N-Terminal
Domain Of The Yeast Hsp90 Chaperone
Length = 225
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 142 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 172
>pdb|2CGF|A Chain A, A Radicicol Analogue Bound To The Atp Binding Site Of The
N- Terminal Domain Of The Yeast Hsp90 Chaperone
Length = 225
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 142 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 172
>pdb|2AKP|A Chain A, Hsp90 Delta24-n210 Mutant
pdb|2AKP|B Chain B, Hsp90 Delta24-n210 Mutant
Length = 186
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 107 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 137
>pdb|1US7|A Chain A, Complex Of Hsp90 And P50
pdb|2BRC|A Chain A, Structure Of A Hsp90 Inhibitor Bound To The N-Terminus Of
Yeast Hsp90.
pdb|2IWS|A Chain A, Radicicol Analogues Bound To The Atp Site Of Hsp90
pdb|2IWU|A Chain A, Analogues Of Radicicol Bound To The Atp-Binding Site Of
Hsp90
pdb|2IWX|A Chain A, Analogues Of Radicicol Bound To The Atp-Binding Site Of
Hsp90.
pdb|1AMW|A Chain A, Adp Binding Site In The Hsp90 Molecular Chaperone
pdb|2VW5|A Chain A, Structure Of The Hsp90 Inhibitor 7-O-Carbamoylpremacbecin
Bound To The N- Terminus Of Yeast Hsp90
pdb|2VW5|B Chain B, Structure Of The Hsp90 Inhibitor 7-O-Carbamoylpremacbecin
Bound To The N- Terminus Of Yeast Hsp90
pdb|2VW5|C Chain C, Structure Of The Hsp90 Inhibitor 7-O-Carbamoylpremacbecin
Bound To The N- Terminus Of Yeast Hsp90
pdb|2VW5|D Chain D, Structure Of The Hsp90 Inhibitor 7-O-Carbamoylpremacbecin
Bound To The N- Terminus Of Yeast Hsp90
pdb|2XD6|A Chain A, Hsp90 Complexed With A Resorcylic Acid Macrolactone.
pdb|2XX4|A Chain A, Macrolactone Inhibitor Bound To Hsp90 N-Term
pdb|2XX5|A Chain A, Macrolactone Inhibitor Bound To Hsp90 N-Term
Length = 214
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 131 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 161
>pdb|2YGA|A Chain A, E88g-n92l Mutant Of N-term Hsp90 Complexed With
Geldanamycin
Length = 220
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 131 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 161
>pdb|1A4H|A Chain A, Structure Of The N-Terminal Domain Of The Yeast Hsp90
Chaperone In Complex With Geldanamycin
Length = 230
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 141 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 171
>pdb|2XX2|A Chain A, Macrolactone Inhibitor Bound To Hsp90 N-Term
pdb|2XX2|B Chain B, Macrolactone Inhibitor Bound To Hsp90 N-Term
pdb|2XX2|C Chain C, Macrolactone Inhibitor Bound To Hsp90 N-Term
pdb|2XX2|D Chain D, Macrolactone Inhibitor Bound To Hsp90 N-Term
Length = 214
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 131 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 161
>pdb|1AM1|A Chain A, Atp Binding Site In The Hsp90 Molecular Chaperone
Length = 213
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 130 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 160
>pdb|2BRE|A Chain A, Structure Of A Hsp90 Inhibitor Bound To The N-Terminus Of
Yeast Hsp90.
pdb|2BRE|B Chain B, Structure Of A Hsp90 Inhibitor Bound To The N-Terminus Of
Yeast Hsp90.
pdb|2VWC|A Chain A, Structure Of The Hsp90 Inhibitor Macbecin Bound To The N-
Terminus Of Yeast Hsp90
Length = 219
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 131 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 161
>pdb|1AH8|A Chain A, Structure Of The Orthorhombic Form Of The N-Terminal
Domain Of The Yeast Hsp90 Chaperone
pdb|1AH8|B Chain B, Structure Of The Orthorhombic Form Of The N-Terminal
Domain Of The Yeast Hsp90 Chaperone
pdb|1AH6|A Chain A, Structure Of The Tetragonal Form Of The N-Terminal Domain
Of The Yeast Hsp90 Chaperone
Length = 220
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 131 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 161
>pdb|2WEP|A Chain A, Yeast Hsp90 N-Terminal Domain Li-Iv Mutant With Adp
pdb|2WEQ|A Chain A, Yeast Hsp90 N-Terminal Domain Li-Iv Mutant With
Geldanamycin
pdb|2WER|A Chain A, Yeast Hsp90 N-Terminal Domain Li-Iv Mutant With Radicicol
pdb|2WER|B Chain B, Yeast Hsp90 N-Terminal Domain Li-Iv Mutant With Radicicol
Length = 220
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 131 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 161
>pdb|1ZW9|A Chain A, Yeast Hsp82 In Complex With The Novel Hsp90 Inhibitor
8-(6-Bromo-
Benzo[1,
3]dioxol-5-Ylsulfanyl)-9-(3-Isopropylamino-Propyl)-
Adenine
pdb|1ZWH|A Chain A, Yeast Hsp82 In Complex With The Novel Hsp90 Inhibitor
Radester Amine
pdb|2FXS|A Chain A, Yeast Hsp82 In Complex With The Novel Hsp90 Inhibitor
Radamide
Length = 240
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 151 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 181
>pdb|3C0E|A Chain A, Yeast Hsp82 N-Terminal Domain: Effects Of Mutants 98-99
Ks- Aa
pdb|3C11|A Chain A, Yeast Hsp82 N-Terminal Domain-Geldanamycin Complex:
Effects Of Mutants 98-99 Ks-Aa
Length = 240
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 151 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 181
>pdb|2YGE|A Chain A, E88g-n92l Mutant Of N-term Hsp90 Complexed With
Geldanamycin
Length = 220
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 131 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 161
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 677
Score = 26.2 bits (56), Expect = 6.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRD 53
A V+ S S + EQ+ W+ NA G++ T D
Sbjct: 131 ADRVQVISKSNDDEQYIWESNAGGSFTVTLD 161
>pdb|3SUM|A Chain A, Crystal Structure Of Cerato-Platanin 5 From M. Perniciosa
(Mpcp5)
pdb|3SUM|B Chain B, Crystal Structure Of Cerato-Platanin 5 From M. Perniciosa
(Mpcp5)
pdb|3SUM|C Chain C, Crystal Structure Of Cerato-Platanin 5 From M. Perniciosa
(Mpcp5)
pdb|3SUM|D Chain D, Crystal Structure Of Cerato-Platanin 5 From M. Perniciosa
(Mpcp5)
Length = 136
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 74 GPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGL 109
P Q CG C ++ +G A VTV VD+ L
Sbjct: 53 APEAQTECGSCWKLRYKGNHAFVTV--VDRVEEANL 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,775,694
Number of Sequences: 62578
Number of extensions: 145457
Number of successful extensions: 350
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 19
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)