Query 032442
Match_columns 140
No_of_seqs 181 out of 707
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 14:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00967 Barwin: Barwin family 100.0 7.4E-49 1.6E-53 283.9 2.7 117 22-138 1-119 (119)
2 PLN03024 Putative EG45-like do 99.8 1.1E-19 2.4E-24 134.4 11.0 111 1-134 1-124 (125)
3 PF07249 Cerato-platanin: Cera 99.7 2.7E-17 5.9E-22 120.7 9.5 101 26-137 1-113 (119)
4 PLN00050 expansin A; Provision 99.7 3.8E-17 8.2E-22 132.9 11.1 126 1-139 1-151 (247)
5 PLN00193 expansin-A; Provision 99.7 1.1E-16 2.4E-21 130.6 12.7 102 25-139 32-159 (256)
6 PLN03023 Expansin-like B1; Pro 99.7 6.9E-16 1.5E-20 125.5 12.5 105 23-139 25-142 (247)
7 smart00837 DPBB_1 Rare lipopro 99.6 4.3E-15 9.4E-20 103.6 5.9 63 68-133 3-87 (87)
8 PF03330 DPBB_1: Rare lipoprot 99.5 1E-14 2.2E-19 98.6 4.2 55 77-133 11-78 (78)
9 COG0797 RlpA Lipoproteins [Cel 99.4 1.7E-12 3.7E-17 104.6 8.8 81 51-138 92-177 (233)
10 PRK10672 rare lipoprotein A; P 99.3 5.9E-11 1.3E-15 101.0 12.3 80 50-136 87-171 (361)
11 TIGR00413 rlpA rare lipoprotei 99.3 3.5E-11 7.5E-16 95.7 9.4 86 45-138 3-93 (208)
12 COG4305 Endoglucanase C-termin 98.7 4.5E-08 9.8E-13 76.7 7.8 73 63-139 55-133 (232)
13 PF04202 Mfp-3: Foot protein 3 91.8 0.2 4.2E-06 33.6 2.8 33 1-38 1-33 (71)
14 PF02015 Glyco_hydro_45: Glyco 88.6 0.23 4.9E-06 39.7 1.3 49 63-112 67-121 (201)
15 PF08139 LPAM_1: Prokaryotic m 87.0 0.28 6.2E-06 26.7 0.7 18 2-20 8-25 (25)
16 PF06291 Lambda_Bor: Bor prote 71.9 2.1 4.5E-05 30.5 1.1 23 1-24 1-23 (97)
17 PF08194 DIM: DIM protein; In 71.9 6.7 0.00015 23.1 3.1 27 1-29 1-27 (36)
18 PF15240 Pro-rich: Proline-ric 70.6 3.2 6.9E-05 32.7 2.0 20 6-25 2-21 (179)
19 PRK09408 ompX outer membrane p 60.7 11 0.00024 29.1 3.3 36 1-36 1-38 (171)
20 TIGR03170 flgA_cterm flagella 60.0 16 0.00034 25.9 3.8 27 77-103 91-117 (122)
21 PF15284 PAGK: Phage-encoded v 59.8 7.5 0.00016 25.5 1.9 15 1-15 1-16 (61)
22 PRK09810 entericidin A; Provis 53.2 11 0.00023 22.9 1.7 20 1-20 2-21 (41)
23 PRK13883 conjugal transfer pro 51.1 9.9 0.00021 29.1 1.6 19 1-20 1-19 (151)
24 PRK15396 murein lipoprotein; P 49.6 14 0.00031 25.2 2.1 21 1-21 1-24 (78)
25 PRK12618 flgA flagellar basal 48.8 29 0.00063 25.9 3.8 27 78-104 108-134 (141)
26 PRK10449 heat-inducible protei 48.7 15 0.00032 27.2 2.2 22 1-23 1-22 (140)
27 PRK09973 putative outer membra 48.6 15 0.00032 25.6 2.0 21 1-21 1-23 (85)
28 PF11153 DUF2931: Protein of u 48.2 16 0.00034 28.7 2.4 20 100-119 106-126 (216)
29 PRK11443 lipoprotein; Provisio 46.3 15 0.00033 27.0 1.9 19 1-21 1-19 (124)
30 PF02402 Lysis_col: Lysis prot 45.7 13 0.00027 23.0 1.2 20 1-20 1-21 (46)
31 PF13144 SAF_2: SAF-like 45.4 34 0.00073 26.1 3.8 27 77-103 165-191 (196)
32 PF11839 DUF3359: Protein of u 44.3 18 0.00038 25.8 1.9 22 1-22 1-23 (96)
33 PRK06005 flgA flagellar basal 43.5 38 0.00083 25.8 3.8 28 77-104 126-153 (160)
34 PF05643 DUF799: Putative bact 41.8 19 0.00041 29.1 2.0 22 1-23 1-22 (215)
35 PRK07018 flgA flagellar basal 40.1 42 0.00092 26.8 3.8 26 78-103 203-228 (235)
36 COG5633 Predicted periplasmic 39.8 20 0.00044 26.6 1.7 25 1-26 1-25 (123)
37 PRK10884 SH3 domain-containing 39.4 33 0.00071 27.4 3.0 16 1-16 1-16 (206)
38 PRK15240 resistance to complem 38.9 42 0.00091 26.1 3.5 36 1-36 1-39 (185)
39 PRK13733 conjugal transfer pro 37.4 19 0.00041 28.2 1.3 20 1-20 1-21 (171)
40 PRK06804 flgA flagellar basal 36.8 51 0.0011 27.2 3.8 27 78-104 229-255 (261)
41 TIGR02209 ftsL_broad cell divi 35.9 35 0.00077 22.4 2.3 12 1-12 1-12 (85)
42 PRK11627 hypothetical protein; 35.5 27 0.00059 27.5 1.9 22 1-22 1-22 (192)
43 COG3417 FlgN Collagen-binding 35.5 34 0.00074 27.4 2.5 24 1-24 1-26 (200)
44 TIGR03511 GldH_lipo gliding mo 35.2 35 0.00075 26.1 2.4 31 8-44 10-42 (156)
45 PRK06911 rpsN 30S ribosomal pr 35.2 27 0.00058 24.8 1.7 36 98-133 57-100 (100)
46 PLN02202 carbonate dehydratase 35.1 1.5E+02 0.0031 24.7 6.3 16 85-102 86-101 (284)
47 PHA03370 virion protein US2; P 34.8 44 0.00096 27.7 3.1 24 97-120 8-34 (269)
48 TIGR02645 ARCH_P_rylase putati 34.5 98 0.0021 28.0 5.5 41 83-128 31-74 (493)
49 PRK08061 rpsN 30S ribosomal pr 33.4 33 0.00073 22.4 1.8 27 107-133 35-61 (61)
50 PRK15209 long polar fimbrial p 33.0 57 0.0012 24.5 3.3 6 1-6 1-6 (174)
51 PRK13835 conjugal transfer pro 32.7 32 0.00069 26.3 1.8 20 1-21 1-20 (145)
52 PF12276 DUF3617: Protein of u 32.6 50 0.0011 24.2 2.9 14 1-14 1-14 (162)
53 PRK00178 tolB translocation pr 30.8 46 0.001 28.1 2.7 23 1-23 1-23 (430)
54 PRK10523 lipoprotein involved 30.5 41 0.00089 27.5 2.3 23 1-23 2-26 (234)
55 PRK11372 lysozyme inhibitor; P 29.9 43 0.00094 24.0 2.1 16 6-21 6-21 (109)
56 PF12099 DUF3575: Protein of u 29.8 37 0.00081 26.4 1.9 15 1-15 1-15 (189)
57 PF11777 DUF3316: Protein of u 29.7 49 0.0011 23.5 2.3 8 1-8 1-8 (114)
58 PRK12617 flgA flagellar basal 29.4 83 0.0018 25.2 3.8 26 78-103 182-207 (214)
59 PRK08515 flgA flagellar basal 29.0 81 0.0017 25.2 3.7 26 77-103 191-216 (222)
60 PF12393 Dr_adhesin: Dr family 28.9 62 0.0013 16.9 2.0 7 1-7 1-7 (21)
61 TIGR00752 slp outer membrane l 28.8 28 0.0006 27.4 1.0 19 1-20 2-20 (182)
62 PF05968 Bacillus_PapR: Bacill 28.7 53 0.0011 20.4 2.0 16 1-16 1-16 (48)
63 PRK09838 periplasmic copper-bi 28.0 56 0.0012 23.7 2.4 23 1-23 1-23 (115)
64 CHL00074 rps14 ribosomal prote 27.5 25 0.00055 24.9 0.5 36 98-133 57-100 (100)
65 PF10731 Anophelin: Thrombin i 27.4 1E+02 0.0023 20.3 3.3 19 6-24 5-23 (65)
66 PRK12786 flgA flagellar basal 26.9 91 0.002 26.6 3.8 27 78-104 285-311 (338)
67 TIGR03780 Bac_Flav_CT_N Bacter 26.8 54 0.0012 27.6 2.4 21 1-21 1-22 (285)
68 PRK13680 hypothetical protein; 26.8 68 0.0015 23.7 2.6 23 1-23 1-24 (117)
69 TIGR03042 PS_II_psbQ_bact phot 26.6 27 0.00058 26.5 0.5 28 5-36 6-33 (142)
70 PRK13791 lysozyme inhibitor; P 26.3 76 0.0016 23.0 2.8 20 1-20 1-21 (113)
71 PRK12407 flgH flagellar basal 25.1 44 0.00096 27.0 1.5 19 1-20 1-19 (221)
72 PF11912 DUF3430: Protein of u 25.0 1.2E+02 0.0027 23.0 4.0 14 1-14 1-14 (212)
73 PRK08881 rpsN 30S ribosomal pr 24.6 35 0.00075 24.2 0.8 36 98-133 58-101 (101)
74 PRK15289 lpfA fimbrial protein 24.1 1E+02 0.0023 23.4 3.4 11 1-11 1-11 (190)
75 PRK00022 lolB outer membrane l 23.9 58 0.0013 25.2 2.0 18 3-20 3-20 (202)
76 TIGR03519 Bac_Flav_fam_1 Bacte 23.9 38 0.00083 27.8 1.0 14 1-14 1-14 (292)
77 PRK10780 periplasmic chaperone 23.9 80 0.0017 23.7 2.7 13 107-119 152-164 (165)
78 PLN02179 carbonic anhydrase 23.4 2.8E+02 0.0061 22.4 5.9 16 85-102 93-108 (235)
79 PRK03002 prsA peptidylprolyl i 23.0 1.2E+02 0.0025 24.9 3.7 30 1-30 1-33 (285)
80 COG3056 Uncharacterized lipopr 22.9 46 0.00099 26.7 1.2 19 6-24 19-37 (204)
81 COG5645 Predicted periplasmic 22.9 79 0.0017 21.8 2.2 20 1-21 1-20 (80)
82 PRK10053 hypothetical protein; 22.8 84 0.0018 23.4 2.6 11 1-11 1-11 (130)
83 PF12262 Lipase_bact_N: Bacter 22.1 70 0.0015 26.5 2.2 23 1-23 1-24 (268)
84 PRK10718 RpoE-regulated lipopr 21.9 63 0.0014 25.8 1.8 22 1-22 1-22 (191)
85 PRK13861 type IV secretion sys 21.8 94 0.002 26.0 2.9 13 25-37 31-43 (292)
86 PRK09733 putative fimbrial pro 21.6 1.4E+02 0.003 22.5 3.7 16 1-16 1-16 (181)
87 TIGR02747 TraV type IV conjuga 21.5 59 0.0013 24.7 1.5 22 1-22 1-22 (144)
88 PF07437 YfaZ: YfaZ precursor; 20.5 80 0.0017 24.5 2.1 15 123-137 130-144 (180)
89 COG3738 Uncharacterized protei 20.2 1.6E+02 0.0034 23.4 3.7 30 19-51 38-72 (200)
90 PF07610 DUF1573: Protein of u 20.2 2E+02 0.0044 16.8 3.6 44 85-133 2-45 (45)
91 COG3019 Predicted metal-bindin 20.0 1E+02 0.0022 23.6 2.5 34 1-36 1-35 (149)
No 1
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=100.00 E-value=7.4e-49 Score=283.92 Aligned_cols=117 Identities=74% Similarity=1.302 Sum_probs=92.7
Q ss_pred cCCcceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccceeeccCCCCCCCCccCCceEEEEeCCCCCEEEEEEe
Q 032442 22 SASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIV 101 (140)
Q Consensus 22 ~~~~~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~~A~~~p~~p~~~~~CGkci~Vtn~~~g~sv~v~Vv 101 (140)
++++||+|||+|+|+++||+|+++|.||++||+++|++||++|+|+|||+|..|+++..||||++|||+.||++++||||
T Consensus 1 sa~nVraTYh~Y~p~~~nwdl~~~s~yCAtwda~kpl~wr~kYgWtAfCgp~g~~gq~~CGkClrVTNt~tga~~~~RIV 80 (119)
T PF00967_consen 1 SASNVRATYHYYNPAQNNWDLNAVSAYCATWDADKPLAWRSKYGWTAFCGPAGPMGQDSCGKCLRVTNTATGAQVTVRIV 80 (119)
T ss_dssp EEEEEEEE-EESS-GGGTT-TTTT--TTHHHHTTS-CHHHHHS--EEC-STT---SGGGTT-EEEEE-TTT--EEEEEEE
T ss_pred CccceeeeeeecCcccCCcccccceeeEeeecCCCCccccccCCeeEEecccCccCcccccceEEEEecCCCcEEEEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCHHHHHHhh--CCCCCCcEEEEEEEEEec
Q 032442 102 DQCSNGGLDLDAGVFRQLV--GRDNSQNQLIVNYQFVNC 138 (140)
Q Consensus 102 D~C~~g~lDLS~~aF~~l~--g~~~~~G~~~V~w~~V~C 138 (140)
|+|++|+|||++.+|++|. |+++..|++.|+|+||+|
T Consensus 81 DqCsnGGLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 81 DQCSNGGLDLDPTVFNQIDTDGQGYAQGHLIVDYEFVDC 119 (119)
T ss_dssp EE-SSSSEES-SSSHHHH-SSSHHHHHTEEEEEEEEE--
T ss_pred EcCCCCCcccChhHHhhhccCCcccccceEEEEEEEEcC
Confidence 9999999999999999994 556899999999999999
No 2
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.82 E-value=1.1e-19 Score=134.40 Aligned_cols=111 Identities=27% Similarity=0.316 Sum_probs=76.5
Q ss_pred CCchhHHHHHHHHHHHHhhhhcCCcceEEEeecCCCCCCCCCcccceeeccc-CCCCcchhccccceeeccCCCCCCCCc
Q 032442 1 MGKLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTR-DANKPLAWRRKYGWTAFCGPVGPRGQA 79 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~~~~~~~~tY~~y~p~~~~~~~~~~~~~Ca~~-~~~~~~a~~~~y~~~A~~~p~~p~~~~ 79 (140)
|.|.-++++.+++.|..++ .+.+.++|| |++.. . ++|... ..+. .-.|++.+.| ++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~--~~~~G~AT~--Y~~~~----~----gAC~~~~~~g~--------~iaAls~~lf-~~G~ 59 (125)
T PLN03024 1 MSKRILIFSTVLVFLFSVS--YATPGIATF--YTSYT----P----SACYRGTSFGV--------MIAAASDSLW-NNGR 59 (125)
T ss_pred CceeeHHHHHHHHHHhhhh--cccceEEEE--eCCCC----C----ccccCCCCCCC--------EeEEeCHHHc-CCCc
Confidence 5555344444444444333 233567887 77642 2 256432 1112 2356666666 7889
Q ss_pred cCCceEEEEeC---------CCCCEEEEEEeeCCCC---CCCCCCHHHHHHhhCCCCCCcEEEEEEE
Q 032442 80 ACGKCLRVTNR---------GTGAQVTVRIVDQCSN---GGLDLDAGVFRQLVGRDNSQNQLIVNYQ 134 (140)
Q Consensus 80 ~CGkci~Vtn~---------~~g~sv~v~VvD~C~~---g~lDLS~~aF~~l~g~~~~~G~~~V~w~ 134 (140)
.||+|++|++. .+|++|+|+|+|+||. ++||||++||++|+. .+.|+++|+|.
T Consensus 60 ~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~--~~aG~v~V~y~ 124 (125)
T PLN03024 60 VCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIAN--PVAGIINIDYI 124 (125)
T ss_pred ccCceEEEEECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcC--ccCCEEEEEEe
Confidence 99999999963 2689999999999973 599999999999964 78999999996
No 3
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=99.73 E-value=2.7e-17 Score=120.71 Aligned_cols=101 Identities=20% Similarity=0.366 Sum_probs=80.1
Q ss_pred ceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccceeeccC-CCCC----------CCCccCCceEEEEeCCCCC
Q 032442 26 VRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCG-PVGP----------RGQAACGKCLRVTNRGTGA 94 (140)
Q Consensus 26 ~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~~A~~~-p~~p----------~~~~~CGkci~Vtn~~~g~ 94 (140)
|.++| |+.+++-+.++.+.+|++..++.. .|| |..+.. |.|| |+++.||.|++|++ +|+
T Consensus 1 vtv~y---d~~YD~~~~sl~~vaCSdg~nGL~----tk~-~~t~g~lp~Fp~IGg~~~V~gWnS~~CGtC~~lty--~g~ 70 (119)
T PF07249_consen 1 VTVSY---DTGYDDASRSLTTVACSDGPNGLI----TKG-YPTFGSLPNFPYIGGAPAVAGWNSPNCGTCWKLTY--NGR 70 (119)
T ss_dssp -EEEE----CCGGSTT-BGGGSSSSSTTTSCC----CCH--SBCCCSTTTTSEEEETT--STT-TTTT-EEEEEE--TTE
T ss_pred CeeEe---cCCCCCCCCccceEEecCCCCccc----ccC-ccchhhcCCCCeeccccccccCCCCCCCCeEEEEE--CCe
Confidence 35667 999999999999999999999886 787 888877 8888 78999999999996 899
Q ss_pred EEEEEEeeCCCCCCCCCCHHHHHHh-hCCCCCCcEEEEEEEEEe
Q 032442 95 QVTVRIVDQCSNGGLDLDAGVFRQL-VGRDNSQNQLIVNYQFVN 137 (140)
Q Consensus 95 sv~v~VvD~C~~g~lDLS~~aF~~l-~g~~~~~G~~~V~w~~V~ 137 (140)
+|.+..+|.- .+++|++++||+.| .|+....|+|+++++.|+
T Consensus 71 si~vlaID~a-~~gfnis~~A~n~LT~g~a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 71 SIYVLAIDHA-GGGFNISLDAMNDLTNGQAVELGRVDATYTQVD 113 (119)
T ss_dssp EEEEEEEEE--SSSEEE-HHHHHHHHTS-CCCC-EEE-EEEEE-
T ss_pred EEEEEEEecC-CCcccchHHHHHHhcCCcccceeEEEEEEEEcC
Confidence 9999999997 67899999999999 457789999999999986
No 4
>PLN00050 expansin A; Provisional
Probab=99.72 E-value=3.8e-17 Score=132.85 Aligned_cols=126 Identities=20% Similarity=0.365 Sum_probs=86.3
Q ss_pred CCchhHHHHHHHHHHHHhh--hhcCCcceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccc--eeeccCCCCCC
Q 032442 1 MGKLSLCALLFLCSLAIAA--AQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYG--WTAFCGPVGPR 76 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~--a~~~~~~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~--~~A~~~p~~p~ 76 (140)
|+-+..-++.+|.+|-..+ +..=...+||| |-.. +. .++.+++|+..+.... .|+ ..|++.+.| +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~--Yg~~-dg--~gt~gGACGYg~l~~~-----~~g~~~AAls~~lf-~ 69 (247)
T PLN00050 1 MECLGYTIVALLSILKIVEGYGSGWTGAHATF--YGGG-DA--SGTMGGACGYGNLYSQ-----GYGTNTAALSTALF-N 69 (247)
T ss_pred CcchhhhHHHHhhhheeccccCCCccccEEEE--cCCC-CC--CCCCCcccCCCCcccc-----CCCceeeeccHhHc-c
Confidence 5555444555555552222 22234567888 4322 11 2345689987753221 122 355555666 7
Q ss_pred CCccCCceEEEEeCCC-----CCEEEEEEeeCCCC----------------CCCCCCHHHHHHhhCCCCCCcEEEEEEEE
Q 032442 77 GQAACGKCLRVTNRGT-----GAQVTVRIVDQCSN----------------GGLDLDAGVFRQLVGRDNSQNQLIVNYQF 135 (140)
Q Consensus 77 ~~~~CGkci~Vtn~~~-----g~sv~v~VvD~C~~----------------g~lDLS~~aF~~l~g~~~~~G~~~V~w~~ 135 (140)
++..||+|++|+++.. +++|+|+|+|+||. .|||||+.||.+|+. ...|+++|+|+.
T Consensus 70 ~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~--~~aGii~V~yRR 147 (247)
T PLN00050 70 NGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ--YKAGIVPVQYRR 147 (247)
T ss_pred CCccccceEEEEcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh--hcCCeeeeEEEE
Confidence 8999999999998542 24899999999963 799999999999974 788999999999
Q ss_pred EecC
Q 032442 136 VNCG 139 (140)
Q Consensus 136 V~C~ 139 (140)
|+|.
T Consensus 148 VpC~ 151 (247)
T PLN00050 148 VACR 151 (247)
T ss_pred ecCc
Confidence 9996
No 5
>PLN00193 expansin-A; Provisional
Probab=99.71 E-value=1.1e-16 Score=130.65 Aligned_cols=102 Identities=23% Similarity=0.383 Sum_probs=75.4
Q ss_pred cceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccc--eeeccCCCCCCCCccCCceEEEEeCC--------CCC
Q 032442 25 NVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYG--WTAFCGPVGPRGQAACGKCLRVTNRG--------TGA 94 (140)
Q Consensus 25 ~~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~--~~A~~~p~~p~~~~~CGkci~Vtn~~--------~g~ 94 (140)
..++|| |..... .++.+++|+..+-.. ..|+ .+|++.+.| +++..||+|++|++.. +|+
T Consensus 32 ~a~AT~--Yg~~d~---~gt~gGACGYg~l~~-----~~~g~~~AAls~~lf-~~G~~CGaCyev~C~~~~~~~~C~~g~ 100 (256)
T PLN00193 32 KAHATF--YGGSDA---SGTMGGACGYGNLYS-----TGYGTRTAALSTALF-NDGASCGQCYRIMCDYQADSRWCIKGA 100 (256)
T ss_pred eeEEEE--cCCCCC---CCCCCcccCCCCccc-----cCCCceeeecCHhHc-cCCccccCeEEEECCCCCCCccccCCC
Confidence 456777 553321 123468998764321 2222 355555666 7889999999999842 467
Q ss_pred EEEEEEeeCCCC----------------CCCCCCHHHHHHhhCCCCCCcEEEEEEEEEecC
Q 032442 95 QVTVRIVDQCSN----------------GGLDLDAGVFRQLVGRDNSQNQLIVNYQFVNCG 139 (140)
Q Consensus 95 sv~v~VvD~C~~----------------g~lDLS~~aF~~l~g~~~~~G~~~V~w~~V~C~ 139 (140)
+|+|+|+|+||. .|||||+.||.+|+. ...|+++|+|+.|+|.
T Consensus 101 sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~--~~~Giv~V~yrRVpC~ 159 (256)
T PLN00193 101 SVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI--YRGGIVPVLFQRVPCK 159 (256)
T ss_pred eEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh--hcCCeEeEEEEEeccc
Confidence 999999999963 589999999999974 7899999999999996
No 6
>PLN03023 Expansin-like B1; Provisional
Probab=99.68 E-value=6.9e-16 Score=125.49 Aligned_cols=105 Identities=19% Similarity=0.337 Sum_probs=76.6
Q ss_pred CCcceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccce--eeccCCCCCCCCccCCceEEEEeCC----CCCEE
Q 032442 23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGW--TAFCGPVGPRGQAACGKCLRVTNRG----TGAQV 96 (140)
Q Consensus 23 ~~~~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~--~A~~~p~~p~~~~~CGkci~Vtn~~----~g~sv 96 (140)
=...+||| |.+.+. .++.+++|+..+...+. |+. .|. .+.| +++..||+|++|+|.. .+++|
T Consensus 25 W~~a~AT~--Yg~~~g---~gt~gGACGYg~~~~~~-----~g~~~aa~-s~Lf-~~G~~CGaCy~irC~~~~~C~~~~v 92 (247)
T PLN03023 25 FTYSRATY--YGSPDC---LGTPTGACGFGEYGRTV-----NGGNVAGV-SRLY-RNGTGCGACYQVRCKAPNLCSDDGV 92 (247)
T ss_pred cccceEEE--eCCCCC---CCCCCccccCCccccCC-----Ccceeeee-hhhh-cCCchhcccEEeecCCCCccCCCCe
Confidence 34557787 554431 23457899887644432 221 233 2555 7889999999999964 46689
Q ss_pred EEEEeeCC--CCCCCCCCHHHHHHhhCCC-----CCCcEEEEEEEEEecC
Q 032442 97 TVRIVDQC--SNGGLDLDAGVFRQLVGRD-----NSQNQLIVNYQFVNCG 139 (140)
Q Consensus 97 ~v~VvD~C--~~g~lDLS~~aF~~l~g~~-----~~~G~~~V~w~~V~C~ 139 (140)
+|+|+|.| +..|||||..||.+|+..+ ...|+++|+|+.|+|.
T Consensus 93 ~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~ 142 (247)
T PLN03023 93 NVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCR 142 (247)
T ss_pred EEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecc
Confidence 99999998 4689999999999996312 4679999999999995
No 7
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.57 E-value=4.3e-15 Score=103.61 Aligned_cols=63 Identities=22% Similarity=0.439 Sum_probs=51.9
Q ss_pred eccCCCCCCCCccCCceEEEEeC------CCCCEEEEEEeeCCCC----------------CCCCCCHHHHHHhhCCCCC
Q 032442 68 AFCGPVGPRGQAACGKCLRVTNR------GTGAQVTVRIVDQCSN----------------GGLDLDAGVFRQLVGRDNS 125 (140)
Q Consensus 68 A~~~p~~p~~~~~CGkci~Vtn~------~~g~sv~v~VvD~C~~----------------g~lDLS~~aF~~l~g~~~~ 125 (140)
|++.+.| +++..||+|++|++. .++++|+|+|+|+||. +|||||+.||.+|+. ..
T Consensus 3 A~s~~lf-~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~--~~ 79 (87)
T smart00837 3 ALSTALF-NNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ--YK 79 (87)
T ss_pred ccCHHHc-cCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh--hc
Confidence 3444455 788999999999973 1356999999999963 599999999999974 78
Q ss_pred CcEEEEEE
Q 032442 126 QNQLIVNY 133 (140)
Q Consensus 126 ~G~~~V~w 133 (140)
.|+|+|+|
T Consensus 80 ~Gvi~v~y 87 (87)
T smart00837 80 AGIVPVKY 87 (87)
T ss_pred CCEEeeEC
Confidence 99999986
No 8
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.52 E-value=1e-14 Score=98.60 Aligned_cols=55 Identities=33% Similarity=0.612 Sum_probs=45.5
Q ss_pred CCccCCceEEEEeC---CC-----C--CEEEEEEeeCCC---CCCCCCCHHHHHHhhCCCCCCcEEEEEE
Q 032442 77 GQAACGKCLRVTNR---GT-----G--AQVTVRIVDQCS---NGGLDLDAGVFRQLVGRDNSQNQLIVNY 133 (140)
Q Consensus 77 ~~~~CGkci~Vtn~---~~-----g--~sv~v~VvD~C~---~g~lDLS~~aF~~l~g~~~~~G~~~V~w 133 (140)
++..||+|+++++. .. . ++|+|+|+|+|| .++||||++||++|+. .+.|+++|+|
T Consensus 11 ~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~--~~~G~i~V~w 78 (78)
T PF03330_consen 11 NGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALAD--PDAGVIPVEW 78 (78)
T ss_dssp GGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBS--TTCSSEEEEE
T ss_pred CCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCC--CCceEEEEEC
Confidence 45889999999981 11 1 999999999996 7999999999999964 8999999999
No 9
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=99.38 E-value=1.7e-12 Score=104.56 Aligned_cols=81 Identities=22% Similarity=0.200 Sum_probs=71.3
Q ss_pred ccCCCCcchhccccceeecc--CCCCCCCCccCCceEEEEeCCCCCEEEEEEeeCCC---CCCCCCCHHHHHHhhCCCCC
Q 032442 51 TRDANKPLAWRRKYGWTAFC--GPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCS---NGGLDLDAGVFRQLVGRDNS 125 (140)
Q Consensus 51 ~~~~~~~~a~~~~y~~~A~~--~p~~p~~~~~CGkci~Vtn~~~g~sv~v~VvD~C~---~g~lDLS~~aF~~l~g~~~~ 125 (140)
...+++.++.+++|++.+|. |+..|.++. ++|||..||++|+|||.|++| .+.||||.+|+++|+ ...
T Consensus 92 ~~fhgr~TA~Ge~~n~~~~tAAH~TLP~~t~-----v~VtNl~NgrsvvVRINDRGPf~~gRiIDlS~aAA~~l~--~~~ 164 (233)
T COG0797 92 EKFHGRKTANGERYDMNALTAAHKTLPLPTY-----VRVTNLDNGRSVVVRINDRGPFVSGRIIDLSKAAADKLG--MIR 164 (233)
T ss_pred cccCCccccCcccccccccccccccCCCCCE-----EEEEEccCCcEEEEEEeCCCCCCCCcEeEcCHHHHHHhC--Ccc
Confidence 34557888999999999995 478888887 999999999999999999996 578999999999995 489
Q ss_pred CcEEEEEEEEEec
Q 032442 126 QNQLIVNYQFVNC 138 (140)
Q Consensus 126 ~G~~~V~w~~V~C 138 (140)
.|+.+|..+++.+
T Consensus 165 ~G~a~V~i~~l~~ 177 (233)
T COG0797 165 SGVAKVRIEVLGV 177 (233)
T ss_pred CceEEEEEEEecc
Confidence 9999999999875
No 10
>PRK10672 rare lipoprotein A; Provisional
Probab=99.27 E-value=5.9e-11 Score=100.96 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=62.4
Q ss_pred cccCCCCcchhccccceeecc--CCCCCCCCccCCceEEEEeCCCCCEEEEEEeeCCC---CCCCCCCHHHHHHhhCCCC
Q 032442 50 STRDANKPLAWRRKYGWTAFC--GPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCS---NGGLDLDAGVFRQLVGRDN 124 (140)
Q Consensus 50 a~~~~~~~~a~~~~y~~~A~~--~p~~p~~~~~CGkci~Vtn~~~g~sv~v~VvD~C~---~g~lDLS~~aF~~l~g~~~ 124 (140)
+....++.++.++.|...+|. |+..|.++- ++|||..||++|+|+|.|++| .+.||||+.|+++|+ ..
T Consensus 87 g~~f~G~~TA~Ge~~~~~~~tAAH~tLPlps~-----vrVtNl~ngrsvvVrVnDRGP~~~gRiiDLS~aAA~~Lg--~~ 159 (361)
T PRK10672 87 DAEAGSNLTASGERFDPNALTAAHPTLPIPSY-----VRVTNLANGRMIVVRINDRGPYGPGRVIDLSRAAADRLN--TS 159 (361)
T ss_pred CCccCCCcCcCceeecCCcCeeeccCCCCCCE-----EEEEECCCCcEEEEEEeCCCCCCCCCeeEcCHHHHHHhC--CC
Confidence 344566788999999887774 456665555 999999999999999999995 689999999999994 24
Q ss_pred CCcEEEEEEEEE
Q 032442 125 SQNQLIVNYQFV 136 (140)
Q Consensus 125 ~~G~~~V~w~~V 136 (140)
..+++.|+.--|
T Consensus 160 ~~~~V~ve~i~v 171 (361)
T PRK10672 160 NNTKVRIDPIIV 171 (361)
T ss_pred CCceEEEEEEee
Confidence 456666665433
No 11
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=99.26 E-value=3.5e-11 Score=95.66 Aligned_cols=86 Identities=21% Similarity=0.186 Sum_probs=69.3
Q ss_pred cceeecccCCCCcchhccccceeeccC--CCCCCCCccCCceEEEEeCCCCCEEEEEEeeCCC---CCCCCCCHHHHHHh
Q 032442 45 VGAYCSTRDANKPLAWRRKYGWTAFCG--PVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCS---NGGLDLDAGVFRQL 119 (140)
Q Consensus 45 ~~~~Ca~~~~~~~~a~~~~y~~~A~~~--p~~p~~~~~CGkci~Vtn~~~g~sv~v~VvD~C~---~g~lDLS~~aF~~l 119 (140)
+|+| +....++.++.++.|...+|.. +..|.++- ++|||..||++|+|+|+|++| ...||||++|+++|
T Consensus 3 ASwY-g~~f~G~~TAnGe~y~~~~~tAAHktLPlgT~-----V~VtNl~ngrsviVrVnDRGPf~~gRiIDLS~aAA~~L 76 (208)
T TIGR00413 3 ASWY-GPKFHGRKTANGEVYNMKALTAAHKTLPFNTY-----VKVTNLHNNRSVIVRINDRGPFSDDRIIDLSHAAAREI 76 (208)
T ss_pred EeEe-CCCCCCCcCCCCeecCCCccccccccCCCCCE-----EEEEECCCCCEEEEEEeCCCCCCCCCEEECCHHHHHHc
Confidence 3444 4445667778888888777743 55665554 999999999999999999996 58999999999999
Q ss_pred hCCCCCCcEEEEEEEEEec
Q 032442 120 VGRDNSQNQLIVNYQFVNC 138 (140)
Q Consensus 120 ~g~~~~~G~~~V~w~~V~C 138 (140)
. ....|+.+|+.+.+..
T Consensus 77 g--~~~~G~a~V~vevl~~ 93 (208)
T TIGR00413 77 G--LISRGVGQVRIEVLHV 93 (208)
T ss_pred C--CCcCceEEEEEEEEec
Confidence 4 4899999999998864
No 12
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=98.73 E-value=4.5e-08 Score=76.72 Aligned_cols=73 Identities=25% Similarity=0.318 Sum_probs=57.3
Q ss_pred ccceeeccCCCCC---CCCccCCceEEEEeCCCCCEEEEEEeeCCC---CCCCCCCHHHHHHhhCCCCCCcEEEEEEEEE
Q 032442 63 KYGWTAFCGPVGP---RGQAACGKCLRVTNRGTGAQVTVRIVDQCS---NGGLDLDAGVFRQLVGRDNSQNQLIVNYQFV 136 (140)
Q Consensus 63 ~y~~~A~~~p~~p---~~~~~CGkci~Vtn~~~g~sv~v~VvD~C~---~g~lDLS~~aF~~l~g~~~~~G~~~V~w~~V 136 (140)
.-..+|++-.+.. -..+.-|..+||.. .....+|.|+|.-| .|.|||||.||.+|. ++.+|||+|.|+.|
T Consensus 55 d~eITAlNPaqlNlGGipAAmAGaYLrVqG--PKG~TTVYVTDlYPegasGaLDLSpNAFakIG--nm~qGrIpvqWrvv 130 (232)
T COG4305 55 DMEITALNPAQLNLGGIPAAMAGAYLRVQG--PKGKTTVYVTDLYPEGASGALDLSPNAFAKIG--NMKQGRIPVQWRVV 130 (232)
T ss_pred cceeeecCHHHcccCCchhhhccceEEEEC--CCCceEEEEecccccccccccccChHHHhhhc--chhcCccceeEEEe
Confidence 3356787643321 23467899999996 45677899999985 699999999999994 59999999999999
Q ss_pred ecC
Q 032442 137 NCG 139 (140)
Q Consensus 137 ~C~ 139 (140)
+-|
T Consensus 131 ~aP 133 (232)
T COG4305 131 KAP 133 (232)
T ss_pred ccc
Confidence 765
No 13
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=91.77 E-value=0.2 Score=33.56 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=24.5
Q ss_pred CCchhHHHHHHHHHHHHhhhhcCCcceEEEeecCCCCC
Q 032442 1 MGKLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQH 38 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~~~~~~~~tY~~y~p~~~ 38 (140)
|+++||-+|+.+.|+.+.+-||..+ .+|.|.++
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqSdag-----~~y~p~y~ 33 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQSDAG-----YYYYPGYN 33 (71)
T ss_pred CCchhHHHHHHHHHHhhheeeecCc-----cccCCCCC
Confidence 8999999888777777777787775 23577754
No 14
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=88.55 E-value=0.23 Score=39.72 Aligned_cols=49 Identities=22% Similarity=0.440 Sum_probs=30.7
Q ss_pred ccceeeccCCCCCCCCccCCceEEEEeCC---CCCEEEEEEeeCC---CCCCCCCC
Q 032442 63 KYGWTAFCGPVGPRGQAACGKCLRVTNRG---TGAQVTVRIVDQC---SNGGLDLD 112 (140)
Q Consensus 63 ~y~~~A~~~p~~p~~~~~CGkci~Vtn~~---~g~sv~v~VvD~C---~~g~lDLS 112 (140)
.|++.|..-... .....|++|+++|-+. .||+.+|+|...- ..++|||-
T Consensus 67 ayGfaA~~~~G~-~e~~~Cc~Cy~LtFt~g~l~GKkmiVQ~tNtG~dlg~n~FDl~ 121 (201)
T PF02015_consen 67 AYGFAAASITGG-SESSWCCACYELTFTSGPLKGKKMIVQVTNTGGDLGSNQFDLA 121 (201)
T ss_dssp EEEEEEEE-TT---HHHHTT-EEEEEE-SSTTTT-EEEEEEEEE-TTTTTTEEEEE
T ss_pred eeeeeeeeecCC-CCCCcccceEEEEEcCCCcCCCEeEEEecccCCCCCCCeEEEE
Confidence 467777642111 2457899999998764 5899999999886 35677765
No 15
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=87.02 E-value=0.28 Score=26.73 Aligned_cols=18 Identities=39% Similarity=0.381 Sum_probs=11.0
Q ss_pred CchhHHHHHHHHHHHHhhh
Q 032442 2 GKLSLCALLFLCSLAIAAA 20 (140)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~a 20 (140)
||+ ++.++.+.+|++||.
T Consensus 8 Kki-l~~l~a~~~LagCss 25 (25)
T PF08139_consen 8 KKI-LFPLLALFMLAGCSS 25 (25)
T ss_pred HHH-HHHHHHHHHHhhccC
Confidence 454 555555566888863
No 16
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=71.89 E-value=2.1 Score=30.51 Aligned_cols=23 Identities=35% Similarity=0.249 Sum_probs=14.9
Q ss_pred CCchhHHHHHHHHHHHHhhhhcCC
Q 032442 1 MGKLSLCALLFLCSLAIAAAQSAS 24 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~~~~ 24 (140)
|||+ ++...+.++|++|+.|+..
T Consensus 1 mKk~-ll~~~lallLtgCatqt~~ 23 (97)
T PF06291_consen 1 MKKL-LLAAALALLLTGCATQTFT 23 (97)
T ss_pred CcHH-HHHHHHHHHHcccceeEEE
Confidence 8887 3333334577999987443
No 17
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=71.88 E-value=6.7 Score=23.14 Aligned_cols=27 Identities=41% Similarity=0.322 Sum_probs=13.2
Q ss_pred CCchhHHHHHHHHHHHHhhhhcCCcceEE
Q 032442 1 MGKLSLCALLFLCSLAIAAAQSASNVRAT 29 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~~~~~~~~t 29 (140)
||-+++- +++.+|+.++|+.++.+.+.
T Consensus 1 Mk~l~~a--~~l~lLal~~a~~~~pG~Vi 27 (36)
T PF08194_consen 1 MKCLSLA--FALLLLALAAAVPATPGNVI 27 (36)
T ss_pred CceeHHH--HHHHHHHHHhcccCCCCeEE
Confidence 7777762 22333445555544433333
No 18
>PF15240 Pro-rich: Proline-rich
Probab=70.63 E-value=3.2 Score=32.70 Aligned_cols=20 Identities=40% Similarity=0.479 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhhhcCCc
Q 032442 6 LCALLFLCSLAIAAAQSASN 25 (140)
Q Consensus 6 ~~~~~~~~~~~~~~a~~~~~ 25 (140)
|+|||.++|||+.|||....
T Consensus 2 LlVLLSvALLALSSAQ~~dE 21 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDE 21 (179)
T ss_pred hhHHHHHHHHHhhhcccccc
Confidence 55777788999999997664
No 19
>PRK09408 ompX outer membrane protein X; Provisional
Probab=60.72 E-value=11 Score=29.13 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=21.3
Q ss_pred CCchhHHHHH--HHHHHHHhhhhcCCcceEEEeecCCC
Q 032442 1 MGKLSLCALL--FLCSLAIAAAQSASNVRATSHSYNPE 36 (140)
Q Consensus 1 m~~~~~~~~~--~~~~~~~~~a~~~~~~~~tY~~y~p~ 36 (140)
|||+.++.++ ++++++..+++.+.+++.-|.|-+.+
T Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~~~~t~s~GYaq~~~~ 38 (171)
T PRK09408 1 MKKIACLSALACVLAVTAGTAVAATSTVTGGYAQSDAQ 38 (171)
T ss_pred CceEehHHHHHHHHHHhhhhhhcccceEEEEEEEeecc
Confidence 8998665433 23333332444457777888777666
No 20
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=60.05 E-value=16 Score=25.86 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCccCCceEEEEeCCCCCEEEEEEeeC
Q 032442 77 GQAACGKCLRVTNRGTGAQVTVRIVDQ 103 (140)
Q Consensus 77 ~~~~CGkci~Vtn~~~g~sv~v~VvD~ 103 (140)
.+..=|.-|+|.|+.+|+.+.++|++.
T Consensus 91 ~~g~~G~~I~V~N~~s~k~i~~~V~~~ 117 (122)
T TIGR03170 91 EDGAVGDQIRVRNLSSGKIISGIVTGP 117 (122)
T ss_pred cccCCCCEEEEEECCCCCEEEEEEeCC
Confidence 345567779999999999999999874
No 21
>PF15284 PAGK: Phage-encoded virulence factor
Probab=59.76 E-value=7.5 Score=25.52 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=8.5
Q ss_pred CCchh-HHHHHHHHHH
Q 032442 1 MGKLS-LCALLFLCSL 15 (140)
Q Consensus 1 m~~~~-~~~~~~~~~~ 15 (140)
|||+. ||++++|.++
T Consensus 1 Mkk~ksifL~l~~~Ls 16 (61)
T PF15284_consen 1 MKKFKSIFLALVFILS 16 (61)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 77765 5555554444
No 22
>PRK09810 entericidin A; Provisional
Probab=53.16 E-value=11 Score=22.87 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=9.5
Q ss_pred CCchhHHHHHHHHHHHHhhh
Q 032442 1 MGKLSLCALLFLCSLAIAAA 20 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a 20 (140)
|||+.+++++.++.|++|.-
T Consensus 2 Mkk~~~l~~~~~~~L~aCNT 21 (41)
T PRK09810 2 MKRLIVLVLLASTLLTGCNT 21 (41)
T ss_pred hHHHHHHHHHHHHHHhhhhh
Confidence 66654444333334555543
No 23
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=51.07 E-value=9.9 Score=29.12 Aligned_cols=19 Identities=26% Similarity=0.266 Sum_probs=12.2
Q ss_pred CCchhHHHHHHHHHHHHhhh
Q 032442 1 MGKLSLCALLFLCSLAIAAA 20 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a 20 (140)
|+|+ +++++++++|++|+.
T Consensus 1 Mrk~-l~~~~l~l~LaGCAt 19 (151)
T PRK13883 1 MRKI-VLLALLALALGGCAT 19 (151)
T ss_pred ChhH-HHHHHHHHHHhcccC
Confidence 7777 444444566788874
No 24
>PRK15396 murein lipoprotein; Provisional
Probab=49.63 E-value=14 Score=25.20 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=12.7
Q ss_pred CCchhHH---HHHHHHHHHHhhhh
Q 032442 1 MGKLSLC---ALLFLCSLAIAAAQ 21 (140)
Q Consensus 1 m~~~~~~---~~~~~~~~~~~~a~ 21 (140)
|+|..++ +++.+.+|++|+..
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs~ 24 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSSN 24 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCc
Confidence 7764443 33334567899865
No 25
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=48.82 E-value=29 Score=25.92 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=22.4
Q ss_pred CccCCceEEEEeCCCCCEEEEEEeeCC
Q 032442 78 QAACGKCLRVTNRGTGAQVTVRIVDQC 104 (140)
Q Consensus 78 ~~~CGkci~Vtn~~~g~sv~v~VvD~C 104 (140)
+..=|.-|+|.|..+|+.|.++|.+..
T Consensus 108 ~G~~Gd~IrV~N~~S~riV~g~V~~~g 134 (141)
T PRK12618 108 RGGVGDEIRVMNLSSRTTVSGRIAADG 134 (141)
T ss_pred cCCCCCEEEEEECCCCCEEEEEEecCC
Confidence 344577799999999999999999854
No 26
>PRK10449 heat-inducible protein; Provisional
Probab=48.70 E-value=15 Score=27.18 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=13.5
Q ss_pred CCchhHHHHHHHHHHHHhhhhcC
Q 032442 1 MGKLSLCALLFLCSLAIAAAQSA 23 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~~~ 23 (140)
|||+.++ +++..+|++|++...
T Consensus 1 mk~~~~~-~~~~~~l~~C~~~~~ 22 (140)
T PRK10449 1 MKKVVAL-VALSLLMAGCVSSGK 22 (140)
T ss_pred ChhHHHH-HHHHHHHHHhcCCCC
Confidence 8887544 334455688877543
No 27
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=48.60 E-value=15 Score=25.64 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=14.2
Q ss_pred CCchhHH--HHHHHHHHHHhhhh
Q 032442 1 MGKLSLC--ALLFLCSLAIAAAQ 21 (140)
Q Consensus 1 m~~~~~~--~~~~~~~~~~~~a~ 21 (140)
||+..++ +++.+.+|++|+..
T Consensus 1 mk~klll~aviLs~~LLaGCAs~ 23 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCVNE 23 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcCCc
Confidence 7777666 34445667999875
No 28
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=48.18 E-value=16 Score=28.73 Aligned_cols=20 Identities=5% Similarity=0.316 Sum_probs=12.5
Q ss_pred EeeCC-CCCCCCCCHHHHHHh
Q 032442 100 IVDQC-SNGGLDLDAGVFRQL 119 (140)
Q Consensus 100 VvD~C-~~g~lDLS~~aF~~l 119 (140)
++|+. -...+||+++..+++
T Consensus 106 ~~ekK~Y~~~i~ip~~~~~~m 126 (216)
T PF11153_consen 106 YAEKKFYETKIDIPEEIWQKM 126 (216)
T ss_pred cccCcEEEEEEEcCHHHHHHh
Confidence 44444 245777777777777
No 29
>PRK11443 lipoprotein; Provisional
Probab=46.33 E-value=15 Score=27.03 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=11.9
Q ss_pred CCchhHHHHHHHHHHHHhhhh
Q 032442 1 MGKLSLCALLFLCSLAIAAAQ 21 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~ 21 (140)
||+ +++++++++|++|++.
T Consensus 1 Mk~--~~~~~~~~lLsgCa~~ 19 (124)
T PRK11443 1 MKK--FIAPLLALLLSGCQID 19 (124)
T ss_pred ChH--HHHHHHHHHHHhccCC
Confidence 763 3444444578999874
No 30
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=45.70 E-value=13 Score=23.03 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=11.1
Q ss_pred CCchhHHHHHHH-HHHHHhhh
Q 032442 1 MGKLSLCALLFL-CSLAIAAA 20 (140)
Q Consensus 1 m~~~~~~~~~~~-~~~~~~~a 20 (140)
|||+.+++++++ ++|+.|-+
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa 21 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA 21 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh
Confidence 887755544433 34566655
No 31
>PF13144 SAF_2: SAF-like
Probab=45.40 E-value=34 Score=26.11 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.3
Q ss_pred CCccCCceEEEEeCCCCCEEEEEEeeC
Q 032442 77 GQAACGKCLRVTNRGTGAQVTVRIVDQ 103 (140)
Q Consensus 77 ~~~~CGkci~Vtn~~~g~sv~v~VvD~ 103 (140)
.+..=|.-|+|.|..+|+.+.++|++.
T Consensus 165 ~~G~~G~~I~V~N~~S~k~v~g~V~~~ 191 (196)
T PF13144_consen 165 EDGALGDTIRVKNLSSGKIVQGRVIGP 191 (196)
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEecC
Confidence 344457779999999999999999985
No 32
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=44.31 E-value=18 Score=25.79 Aligned_cols=22 Identities=41% Similarity=0.229 Sum_probs=15.1
Q ss_pred CCchhHH-HHHHHHHHHHhhhhc
Q 032442 1 MGKLSLC-ALLFLCSLAIAAAQS 22 (140)
Q Consensus 1 m~~~~~~-~~~~~~~~~~~~a~~ 22 (140)
|+++-+. +++.+.++++|+..+
T Consensus 1 M~k~l~sal~~~~~L~~GCAsts 23 (96)
T PF11839_consen 1 MKKLLLSALALAALLLAGCASTS 23 (96)
T ss_pred CchHHHHHHHHHHHHHhHccCCc
Confidence 8888644 555666778898644
No 33
>PRK06005 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=43.47 E-value=38 Score=25.78 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=23.2
Q ss_pred CCccCCceEEEEeCCCCCEEEEEEeeCC
Q 032442 77 GQAACGKCLRVTNRGTGAQVTVRIVDQC 104 (140)
Q Consensus 77 ~~~~CGkci~Vtn~~~g~sv~v~VvD~C 104 (140)
.+..=|.-|+|.|..+|+.|.++|.+..
T Consensus 126 ~~G~~Gd~IrVrN~~Sgkiv~g~V~~~g 153 (160)
T PRK06005 126 QSGAAGDLIRVRNVDSGVIVSGTVLADG 153 (160)
T ss_pred ccCCCCCEEEEEECCCCCEEEEEEecCC
Confidence 3455678899999999999999999854
No 34
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=41.79 E-value=19 Score=29.12 Aligned_cols=22 Identities=27% Similarity=0.087 Sum_probs=14.3
Q ss_pred CCchhHHHHHHHHHHHHhhhhcC
Q 032442 1 MGKLSLCALLFLCSLAIAAAQSA 23 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~~~ 23 (140)
||++.+++ +.+++|++|+.+..
T Consensus 1 mk~l~~~l-~~~l~LsgCa~~~~ 22 (215)
T PF05643_consen 1 MKKLILGL-AAALLLSGCATTKP 22 (215)
T ss_pred ChhHHHHH-HHHHHHhhccCCCC
Confidence 89985444 44466788876543
No 35
>PRK07018 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=40.05 E-value=42 Score=26.81 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=21.8
Q ss_pred CccCCceEEEEeCCCCCEEEEEEeeC
Q 032442 78 QAACGKCLRVTNRGTGAQVTVRIVDQ 103 (140)
Q Consensus 78 ~~~CGkci~Vtn~~~g~sv~v~VvD~ 103 (140)
+..=|.-|+|.|..+|+.|.++|++.
T Consensus 203 ~G~~Gd~IrVrN~~Sgk~i~g~V~~~ 228 (235)
T PRK07018 203 DGAVGQQIRVRNMASGQVVSGIVTGD 228 (235)
T ss_pred CCCCCCeEEEEECCCCCEEEEEEeCC
Confidence 34567789999999999999999875
No 36
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=39.83 E-value=20 Score=26.57 Aligned_cols=25 Identities=32% Similarity=0.211 Sum_probs=17.2
Q ss_pred CCchhHHHHHHHHHHHHhhhhcCCcc
Q 032442 1 MGKLSLCALLFLCSLAIAAAQSASNV 26 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~~~~~~ 26 (140)
|+|..+ +.+.+++|++|++-.+..+
T Consensus 1 Mrk~~~-~~l~~~lLvGCsS~~~i~~ 25 (123)
T COG5633 1 MRKLCL-LSLALLLLVGCSSHQEILV 25 (123)
T ss_pred CceehH-HHHHHHHhhccCCCCCccc
Confidence 888866 4444466789998766654
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.36 E-value=33 Score=27.35 Aligned_cols=16 Identities=44% Similarity=0.428 Sum_probs=7.7
Q ss_pred CCchhHHHHHHHHHHH
Q 032442 1 MGKLSLCALLFLCSLA 16 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (140)
|+|++++++++|++++
T Consensus 1 m~~~~~~~~~~l~l~~ 16 (206)
T PRK10884 1 MPKLRLIGLTLLALSA 16 (206)
T ss_pred CchhHHHHHHHHHHhh
Confidence 7666554333333333
No 38
>PRK15240 resistance to complement killing; Provisional
Probab=38.85 E-value=42 Score=26.08 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=18.3
Q ss_pred CCchhHHHHHHHHHHHH--hhhhcC-CcceEEEeecCCC
Q 032442 1 MGKLSLCALLFLCSLAI--AAAQSA-SNVRATSHSYNPE 36 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~--~~a~~~-~~~~~tY~~y~p~ 36 (140)
|||.-++.+++++++.. .+|+++ .++..=|.|-..+
T Consensus 1 Mkk~~~~~~~~~~~~~~~~~~a~a~~~t~s~GYaq~~~~ 39 (185)
T PRK15240 1 MKKIVLSSLLLSAAGLAAVPVAQADTHSVSVGYAQSRIE 39 (185)
T ss_pred CchhHHHHHHHHHHHhcchhhhccCCCEEEEEEEEeecc
Confidence 89986554444333322 233332 4556666655443
No 39
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=37.36 E-value=19 Score=28.20 Aligned_cols=20 Identities=30% Similarity=0.119 Sum_probs=14.2
Q ss_pred CCchhHHHHH-HHHHHHHhhh
Q 032442 1 MGKLSLCALL-FLCSLAIAAA 20 (140)
Q Consensus 1 m~~~~~~~~~-~~~~~~~~~a 20 (140)
||++.++++| .+++|.+|++
T Consensus 1 MK~~~~li~l~~~LlL~GCAg 21 (171)
T PRK13733 1 MKQISLLIPLLGTLLLSGCAG 21 (171)
T ss_pred CchhhHHHHHHHHHHhccccC
Confidence 8987766444 4466799987
No 40
>PRK06804 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=36.84 E-value=51 Score=27.21 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.2
Q ss_pred CccCCceEEEEeCCCCCEEEEEEeeCC
Q 032442 78 QAACGKCLRVTNRGTGAQVTVRIVDQC 104 (140)
Q Consensus 78 ~~~CGkci~Vtn~~~g~sv~v~VvD~C 104 (140)
+..=|.-|+|.|..+|+.|.++|++..
T Consensus 229 ~G~~Gd~IrVrN~~SgkvV~a~V~~~g 255 (261)
T PRK06804 229 NGRKGELIKVKNLSSGRVVTATVDGSG 255 (261)
T ss_pred CCCCCCEEEEEECCCCCEEEEEEecCC
Confidence 344577899999999999999998853
No 41
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=35.86 E-value=35 Score=22.42 Aligned_cols=12 Identities=33% Similarity=0.274 Sum_probs=7.5
Q ss_pred CCchhHHHHHHH
Q 032442 1 MGKLSLCALLFL 12 (140)
Q Consensus 1 m~~~~~~~~~~~ 12 (140)
|+++.+++++++
T Consensus 1 ~~~l~~~l~~~v 12 (85)
T TIGR02209 1 EKKLYVLLLLAI 12 (85)
T ss_pred CchHHHHHHHHH
Confidence 778877644443
No 42
>PRK11627 hypothetical protein; Provisional
Probab=35.46 E-value=27 Score=27.48 Aligned_cols=22 Identities=41% Similarity=0.235 Sum_probs=13.4
Q ss_pred CCchhHHHHHHHHHHHHhhhhc
Q 032442 1 MGKLSLCALLFLCSLAIAAAQS 22 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~~ 22 (140)
|=|..++.++.+++|++||+++
T Consensus 1 mlkklll~l~a~~~L~gCA~~p 22 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCATPS 22 (192)
T ss_pred ChHHHHHHHHHHHHHHhhcCCC
Confidence 3344355444456689999884
No 43
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=35.46 E-value=34 Score=27.40 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=15.7
Q ss_pred CCchhHH--HHHHHHHHHHhhhhcCC
Q 032442 1 MGKLSLC--ALLFLCSLAIAAAQSAS 24 (140)
Q Consensus 1 m~~~~~~--~~~~~~~~~~~~a~~~~ 24 (140)
|.|.+++ ++++.++|++|+++.+.
T Consensus 1 mtk~k~~~~il~~al~l~GCs~~~a~ 26 (200)
T COG3417 1 MTKMKIYASILLLALFLSGCSSEPAP 26 (200)
T ss_pred CchHHHHHHHHHHHHHHhhcccCCCc
Confidence 6777776 34444666999985444
No 44
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=35.24 E-value=35 Score=26.07 Aligned_cols=31 Identities=29% Similarity=0.577 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhhcCCcceE-EEeecCCCCC-CCCCcc
Q 032442 8 ALLFLCSLAIAAAQSASNVRA-TSHSYNPEQH-GWDLNA 44 (140)
Q Consensus 8 ~~~~~~~~~~~~a~~~~~~~~-tY~~y~p~~~-~~~~~~ 44 (140)
++++.++|++|... . .||.|.+-.+ +|....
T Consensus 10 ~ll~~~ll~sC~~~------~~vy~~y~~~p~~~W~k~d 42 (156)
T TIGR03511 10 FFLGACVLVSCTEN------TDVYHSYQSTPHGGWQKSD 42 (156)
T ss_pred HHHHHHHhcccCCC------CeEEEEeeECCccCcCCCC
Confidence 33343566777654 3 4777777655 777654
No 45
>PRK06911 rpsN 30S ribosomal protein S14; Reviewed
Probab=35.20 E-value=27 Score=24.82 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=28.4
Q ss_pred EEEeeCC-----C---CCCCCCCHHHHHHhhCCCCCCcEEEEEE
Q 032442 98 VRIVDQC-----S---NGGLDLDAGVFRQLVGRDNSQNQLIVNY 133 (140)
Q Consensus 98 v~VvD~C-----~---~g~lDLS~~aF~~l~g~~~~~G~~~V~w 133 (140)
++|..+| | ...|-||.-.|.+++..+.-+|+..-+|
T Consensus 57 ~R~rNRC~~TGR~Rgv~r~FgLsRi~~Rela~~G~lPGv~KaSW 100 (100)
T PRK06911 57 VRYVTRCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100 (100)
T ss_pred chhhcccCCCCCCcccccccCchHHHHHHHHHcCCCCCeecccC
Confidence 4555577 2 4789999999999965568899998887
No 46
>PLN02202 carbonate dehydratase
Probab=35.09 E-value=1.5e+02 Score=24.69 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=11.9
Q ss_pred EEEEeCCCCCEEEEEEee
Q 032442 85 LRVTNRGTGAQVTVRIVD 102 (140)
Q Consensus 85 i~Vtn~~~g~sv~v~VvD 102 (140)
.+|+| +|.+|.+.+-|
T Consensus 86 ~~l~N--~Ghtv~v~~~~ 101 (284)
T PLN02202 86 ATLVN--HVCNVAMFFGE 101 (284)
T ss_pred eEEEE--CCccEEEEEcC
Confidence 47886 78888888753
No 47
>PHA03370 virion protein US2; Provisional
Probab=34.79 E-value=44 Score=27.75 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=21.4
Q ss_pred EEEEeeCC---CCCCCCCCHHHHHHhh
Q 032442 97 TVRIVDQC---SNGGLDLDAGVFRQLV 120 (140)
Q Consensus 97 ~v~VvD~C---~~g~lDLS~~aF~~l~ 120 (140)
+|+.+|+| |..+.|.++.+|+-|.
T Consensus 8 IVTllD~~~aLPg~S~Da~~~LW~FL~ 34 (269)
T PHA03370 8 IVTLLDECDRLPGRSRDAASTLWIFLI 34 (269)
T ss_pred EEEeecccCCCCCCccccCHHHHHHHH
Confidence 58999999 7899999999999883
No 48
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=34.47 E-value=98 Score=28.04 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=32.2
Q ss_pred ceEEEEeCCCCCEEEEEEeeC-C--CCCCCCCCHHHHHHhhCCCCCCcE
Q 032442 83 KCLRVTNRGTGAQVTVRIVDQ-C--SNGGLDLDAGVFRQLVGRDNSQNQ 128 (140)
Q Consensus 83 kci~Vtn~~~g~sv~v~VvD~-C--~~g~lDLS~~aF~~l~g~~~~~G~ 128 (140)
.-++|+. +++++++.|++. . .+|.+-||..+|++|. ...|.
T Consensus 31 ~rv~v~~--~~~~~~a~~~~~~~~~~~~~~gl~~~~~~~l~---~~~g~ 74 (493)
T TIGR02645 31 DRVEVRI--GGKSLIAILVGSDTLVEMGEIGLSVSAVETFM---AREGD 74 (493)
T ss_pred CeEEEEe--CCEEEEEEEecccccccCCeeeccHHHHHHcC---CCCCC
Confidence 3488984 789999988863 3 6899999999999993 44454
No 49
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=33.37 E-value=33 Score=22.37 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHhhCCCCCCcEEEEEE
Q 032442 107 GGLDLDAGVFRQLVGRDNSQNQLIVNY 133 (140)
Q Consensus 107 g~lDLS~~aF~~l~g~~~~~G~~~V~w 133 (140)
..+.||.-.|.+++..++-+|+..-+|
T Consensus 35 r~fgl~R~~FRe~A~~G~ipGv~KasW 61 (61)
T PRK08061 35 RKFGLCRICFRELAYKGQIPGVKKASW 61 (61)
T ss_pred ccCCccHHHHHHHHHcCcCCCeeeccC
Confidence 567799999999965568899988877
No 50
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=32.98 E-value=57 Score=24.45 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=4.0
Q ss_pred CCchhH
Q 032442 1 MGKLSL 6 (140)
Q Consensus 1 m~~~~~ 6 (140)
|||..+
T Consensus 1 Mkk~~~ 6 (174)
T PRK15209 1 MKKVVF 6 (174)
T ss_pred CchHHH
Confidence 898633
No 51
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=32.74 E-value=32 Score=26.26 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=12.7
Q ss_pred CCchhHHHHHHHHHHHHhhhh
Q 032442 1 MGKLSLCALLFLCSLAIAAAQ 21 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~ 21 (140)
|+|+.+ +++++++|++|+..
T Consensus 1 mrk~~~-~~~~al~LaGCaT~ 20 (145)
T PRK13835 1 LRRLLA-ACILALLLSGCQTL 20 (145)
T ss_pred ChhHHH-HHHHHHHHhccccc
Confidence 677633 33445677888875
No 52
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=32.58 E-value=50 Score=24.24 Aligned_cols=14 Identities=29% Similarity=0.157 Sum_probs=7.9
Q ss_pred CCchhHHHHHHHHH
Q 032442 1 MGKLSLCALLFLCS 14 (140)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (140)
|+|+.+++++++++
T Consensus 1 M~~~~~~~~~~~~~ 14 (162)
T PF12276_consen 1 MKRRLLLALALALL 14 (162)
T ss_pred CchHHHHHHHHHHH
Confidence 78875554444433
No 53
>PRK00178 tolB translocation protein TolB; Provisional
Probab=30.80 E-value=46 Score=28.11 Aligned_cols=23 Identities=43% Similarity=0.446 Sum_probs=17.1
Q ss_pred CCchhHHHHHHHHHHHHhhhhcC
Q 032442 1 MGKLSLCALLFLCSLAIAAAQSA 23 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~~~ 23 (140)
|.|+.+++++++|++...++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (430)
T PRK00178 1 MITLKRIALFVLCLLAGGAAAAE 23 (430)
T ss_pred CcchhHHHHHHHHHHhhHhhcce
Confidence 78888888888788866666544
No 54
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=30.49 E-value=41 Score=27.50 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=14.6
Q ss_pred CCchhHHHHHHHHH--HHHhhhhcC
Q 032442 1 MGKLSLCALLFLCS--LAIAAAQSA 23 (140)
Q Consensus 1 m~~~~~~~~~~~~~--~~~~~a~~~ 23 (140)
|||..+++++++++ |++|...+.
T Consensus 2 mkk~~~~~~~a~~l~~l~gC~~~~~ 26 (234)
T PRK10523 2 MKKAIITALAAAGLFTLMGCNNRAE 26 (234)
T ss_pred chHHHHHHHHHHHHHHhhccCCccc
Confidence 88886665555544 477776553
No 55
>PRK11372 lysozyme inhibitor; Provisional
Probab=29.88 E-value=43 Score=24.00 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhh
Q 032442 6 LCALLFLCSLAIAAAQ 21 (140)
Q Consensus 6 ~~~~~~~~~~~~~~a~ 21 (140)
+++++++++|++|+.-
T Consensus 6 ll~~~~~~lL~gCs~~ 21 (109)
T PRK11372 6 LLIICLPVLLTGCSAY 21 (109)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4455555668899873
No 56
>PF12099 DUF3575: Protein of unknown function (DUF3575); InterPro: IPR021958 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=29.80 E-value=37 Score=26.43 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=9.6
Q ss_pred CCchhHHHHHHHHHH
Q 032442 1 MGKLSLCALLFLCSL 15 (140)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (140)
|||.+++++++++++
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (189)
T PF12099_consen 1 MKKIRILFLLLLLFC 15 (189)
T ss_pred CceehHHHHHHHHHH
Confidence 899877755544443
No 57
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.70 E-value=49 Score=23.54 Aligned_cols=8 Identities=50% Similarity=0.513 Sum_probs=5.6
Q ss_pred CCchhHHH
Q 032442 1 MGKLSLCA 8 (140)
Q Consensus 1 m~~~~~~~ 8 (140)
|||+.+++
T Consensus 1 MKk~~ll~ 8 (114)
T PF11777_consen 1 MKKIILLA 8 (114)
T ss_pred CchHHHHH
Confidence 88885554
No 58
>PRK12617 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=29.44 E-value=83 Score=25.17 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=21.4
Q ss_pred CccCCceEEEEeCCCCCEEEEEEeeC
Q 032442 78 QAACGKCLRVTNRGTGAQVTVRIVDQ 103 (140)
Q Consensus 78 ~~~CGkci~Vtn~~~g~sv~v~VvD~ 103 (140)
+..=|.-|+|+|..+|+.|.++|.+.
T Consensus 182 ~G~~Ge~IrVrN~~SgrvV~g~V~~~ 207 (214)
T PRK12617 182 DAGENERVSVENSSSRRVVQGIVEAS 207 (214)
T ss_pred CCCCCCEEEEEECCCCCEEEEEEeCC
Confidence 34457779999988999999999874
No 59
>PRK08515 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=29.02 E-value=81 Score=25.15 Aligned_cols=26 Identities=8% Similarity=0.296 Sum_probs=21.4
Q ss_pred CCccCCceEEEEeCCCCCEEEEEEeeC
Q 032442 77 GQAACGKCLRVTNRGTGAQVTVRIVDQ 103 (140)
Q Consensus 77 ~~~~CGkci~Vtn~~~g~sv~v~VvD~ 103 (140)
.+..=|.-|+|+| .+|+.|.++|++.
T Consensus 191 ~~G~~Gd~IrVrN-~Sgkii~g~V~~~ 216 (222)
T PRK08515 191 QDGNLGDIIQAKN-KSNKILKAKVLSK 216 (222)
T ss_pred ccCCCCCEEEEEe-CCCCEEEEEEecC
Confidence 3455677899999 8999999999985
No 60
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=28.88 E-value=62 Score=16.85 Aligned_cols=7 Identities=43% Similarity=0.638 Sum_probs=4.8
Q ss_pred CCchhHH
Q 032442 1 MGKLSLC 7 (140)
Q Consensus 1 m~~~~~~ 7 (140)
|||+-|.
T Consensus 1 MKklaiM 7 (21)
T PF12393_consen 1 MKKLAIM 7 (21)
T ss_pred CchHHHH
Confidence 7888554
No 61
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=28.83 E-value=28 Score=27.37 Aligned_cols=19 Identities=21% Similarity=-0.099 Sum_probs=11.3
Q ss_pred CCchhHHHHHHHHHHHHhhh
Q 032442 1 MGKLSLCALLFLCSLAIAAA 20 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a 20 (140)
|+|. ++++++.++|++|++
T Consensus 2 ~~~~-lll~~~~l~LsgCas 20 (182)
T TIGR00752 2 GKKG-LLFTALCFGLTGCIA 20 (182)
T ss_pred ceEE-ehHHHHHHHHhcccC
Confidence 3444 444444466788887
No 62
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=28.71 E-value=53 Score=20.41 Aligned_cols=16 Identities=38% Similarity=0.299 Sum_probs=10.7
Q ss_pred CCchhHHHHHHHHHHH
Q 032442 1 MGKLSLCALLFLCSLA 16 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (140)
|||+-|+-++-+.++.
T Consensus 1 mkkll~~slltlam~~ 16 (48)
T PF05968_consen 1 MKKLLIGSLLTLAMAW 16 (48)
T ss_pred CchHHHhHHHHHHHHh
Confidence 8998777666555543
No 63
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=27.98 E-value=56 Score=23.73 Aligned_cols=23 Identities=30% Similarity=0.156 Sum_probs=12.0
Q ss_pred CCchhHHHHHHHHHHHHhhhhcC
Q 032442 1 MGKLSLCALLFLCSLAIAAAQSA 23 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~~~ 23 (140)
||++.+.+++.++++++.++++.
T Consensus 1 mk~~~~~~~~~~~~~~~~~a~a~ 23 (115)
T PRK09838 1 MKKALKVAMFSLFSVIGFNAQAN 23 (115)
T ss_pred CchHHHHHHHHHHHHHhhhhhhc
Confidence 78875554444444444454443
No 64
>CHL00074 rps14 ribosomal protein S14
Probab=27.55 E-value=25 Score=24.91 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=28.6
Q ss_pred EEEeeCC-----C---CCCCCCCHHHHHHhhCCCCCCcEEEEEE
Q 032442 98 VRIVDQC-----S---NGGLDLDAGVFRQLVGRDNSQNQLIVNY 133 (140)
Q Consensus 98 v~VvD~C-----~---~g~lDLS~~aF~~l~g~~~~~G~~~V~w 133 (140)
++|..+| | ...|-||.-.|.+++..+.-+|+..-+|
T Consensus 57 tRi~NRC~~TGR~Rgv~r~F~LsRi~~Re~a~~G~ipGv~KaSW 100 (100)
T CHL00074 57 TRLHNRCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100 (100)
T ss_pred HHHhccccCCCCCCccccCcCchHHHHHHHHHcCCCCCcccccC
Confidence 5566677 2 4789999999999965568899988887
No 65
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=27.35 E-value=1e+02 Score=20.26 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhhhhcCC
Q 032442 6 LCALLFLCSLAIAAAQSAS 24 (140)
Q Consensus 6 ~~~~~~~~~~~~~~a~~~~ 24 (140)
+++|.+||+.-.+-.|++.
T Consensus 5 l~vialLC~aLva~vQ~AP 23 (65)
T PF10731_consen 5 LIVIALLCVALVAIVQSAP 23 (65)
T ss_pred hhHHHHHHHHHHHHHhcCc
Confidence 4444444444333444443
No 66
>PRK12786 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=26.88 E-value=91 Score=26.63 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=22.7
Q ss_pred CccCCceEEEEeCCCCCEEEEEEeeCC
Q 032442 78 QAACGKCLRVTNRGTGAQVTVRIVDQC 104 (140)
Q Consensus 78 ~~~CGkci~Vtn~~~g~sv~v~VvD~C 104 (140)
+..=|.-|+|.|..+|+.|.++|++.-
T Consensus 285 ~G~~Gd~IrV~N~~S~kiv~g~V~g~g 311 (338)
T PRK12786 285 DGAEGDVVRVLNLQSKRTVTGTVTGRG 311 (338)
T ss_pred ccCCCCEEEEEECCCCCEEEEEEecCC
Confidence 345577799999999999999999864
No 67
>TIGR03780 Bac_Flav_CT_N Bacteroides conjugative transposon TraN protein. Members of this family are the TraN protein encoded by transfer region genes of conjugative transposons of Bacteroides. The family is related to conjugative transfer proteins VirB9 and TrbG of Agrobacterium Ti plasmids.
Probab=26.79 E-value=54 Score=27.60 Aligned_cols=21 Identities=33% Similarity=0.256 Sum_probs=12.9
Q ss_pred CCchh-HHHHHHHHHHHHhhhh
Q 032442 1 MGKLS-LCALLFLCSLAIAAAQ 21 (140)
Q Consensus 1 m~~~~-~~~~~~~~~~~~~~a~ 21 (140)
|||.. ++++++++++++.++|
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~~ 22 (285)
T TIGR03780 1 MKKIFGIMLASLLGVLASNAQQ 22 (285)
T ss_pred CcchHHHHHHHHHHHHHhhhhh
Confidence 88887 4455555555555555
No 68
>PRK13680 hypothetical protein; Provisional
Probab=26.75 E-value=68 Score=23.66 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=11.8
Q ss_pred CCchhHHHHHHHHHH-HHhhhhcC
Q 032442 1 MGKLSLCALLFLCSL-AIAAAQSA 23 (140)
Q Consensus 1 m~~~~~~~~~~~~~~-~~~~a~~~ 23 (140)
|+|..|+.++++.++ .+.|+++.
T Consensus 1 ~~~~~l~~~~~l~~~~~~~sa~~~ 24 (117)
T PRK13680 1 KKRGALLGLLLLSACGSVFAANAE 24 (117)
T ss_pred CchhhhHHHHHHHHHHhHhhhccc
Confidence 778877744443333 33344433
No 69
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=26.61 E-value=27 Score=26.50 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHhhhhcCCcceEEEeecCCC
Q 032442 5 SLCALLFLCSLAIAAAQSASNVRATSHSYNPE 36 (140)
Q Consensus 5 ~~~~~~~~~~~~~~~a~~~~~~~~tY~~y~p~ 36 (140)
++++++++++|.+|+..++.. -.|| .|.
T Consensus 6 s~~Lv~~~~~Lvsc~~p~~~~-p~ty---sp~ 33 (142)
T TIGR03042 6 SLLLVLLLTFLVSCSGPAAAV-PPTY---SPA 33 (142)
T ss_pred HHHHHHHHHHHHHcCCCcccC-CCCC---CHH
Confidence 344555667788888865553 2466 555
No 70
>PRK13791 lysozyme inhibitor; Provisional
Probab=26.31 E-value=76 Score=23.04 Aligned_cols=20 Identities=35% Similarity=0.374 Sum_probs=10.6
Q ss_pred CCchhH-HHHHHHHHHHHhhh
Q 032442 1 MGKLSL-CALLFLCSLAIAAA 20 (140)
Q Consensus 1 m~~~~~-~~~~~~~~~~~~~a 20 (140)
|++.++ ++++++++|++|+.
T Consensus 1 ~~~mk~~~~~~~~~~ls~~~~ 21 (113)
T PRK13791 1 MMKRKLIPFTLFLAALSASTT 21 (113)
T ss_pred CchHHHHHHHHHHHHHhhhhh
Confidence 334443 45555566666665
No 71
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=25.10 E-value=44 Score=26.98 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=11.9
Q ss_pred CCchhHHHHHHHHHHHHhhh
Q 032442 1 MGKLSLCALLFLCSLAIAAA 20 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a 20 (140)
|||+.++++++ ++|++|+.
T Consensus 1 mk~~~~~~~~~-l~l~gCa~ 19 (221)
T PRK12407 1 MKRFLILTALL-LALCGCES 19 (221)
T ss_pred ChhHHHHHHHH-HHHhhccC
Confidence 87775554443 55688875
No 72
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=25.04 E-value=1.2e+02 Score=23.03 Aligned_cols=14 Identities=36% Similarity=0.206 Sum_probs=7.1
Q ss_pred CCchhHHHHHHHHH
Q 032442 1 MGKLSLCALLFLCS 14 (140)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (140)
||.+.+++++++.+
T Consensus 1 MKll~~lilli~~~ 14 (212)
T PF11912_consen 1 MKLLISLILLILLI 14 (212)
T ss_pred CcHHHHHHHHHHHH
Confidence 77764444443333
No 73
>PRK08881 rpsN 30S ribosomal protein S14; Reviewed
Probab=24.56 E-value=35 Score=24.22 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=28.4
Q ss_pred EEEeeCC-----C---CCCCCCCHHHHHHhhCCCCCCcEEEEEE
Q 032442 98 VRIVDQC-----S---NGGLDLDAGVFRQLVGRDNSQNQLIVNY 133 (140)
Q Consensus 98 v~VvD~C-----~---~g~lDLS~~aF~~l~g~~~~~G~~~V~w 133 (140)
++|..+| | ...|-||.-.|.+++..+.-+|+..-+|
T Consensus 58 tRi~NRC~~TGR~Rgv~r~F~LsRi~fRela~~G~lpGv~KsSW 101 (101)
T PRK08881 58 TRLRNRCELTGRPRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101 (101)
T ss_pred HHHhccccCCCCCCccccCcCchHHHHHHHHHcCCCCCeecccC
Confidence 4555577 1 5789999999999965568899988887
No 74
>PRK15289 lpfA fimbrial protein; Provisional
Probab=24.08 E-value=1e+02 Score=23.42 Aligned_cols=11 Identities=9% Similarity=0.033 Sum_probs=5.9
Q ss_pred CCchhHHHHHH
Q 032442 1 MGKLSLCALLF 11 (140)
Q Consensus 1 m~~~~~~~~~~ 11 (140)
|||..|..+++
T Consensus 1 mk~~~~~~~~~ 11 (190)
T PRK15289 1 MKRNIIGGAFT 11 (190)
T ss_pred CcHHHHHHHHH
Confidence 78764443333
No 75
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=23.88 E-value=58 Score=25.15 Aligned_cols=18 Identities=33% Similarity=0.104 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHHHHhhh
Q 032442 3 KLSLCALLFLCSLAIAAA 20 (140)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a 20 (140)
+..+++++++++|++||.
T Consensus 3 ~~~~~~~~~~llL~gCa~ 20 (202)
T PRK00022 3 RLLRLLLLAALLLAGCAV 20 (202)
T ss_pred hhHHHHHHHHHHHHhCCC
Confidence 333344455567799973
No 76
>TIGR03519 Bac_Flav_fam_1 Bacteroidetes-specific putative membrane protein. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.
Probab=23.87 E-value=38 Score=27.78 Aligned_cols=14 Identities=43% Similarity=0.448 Sum_probs=8.5
Q ss_pred CCchhHHHHHHHHH
Q 032442 1 MGKLSLCALLFLCS 14 (140)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (140)
|||+.+++++++++
T Consensus 1 mkk~~~~~~l~~~~ 14 (292)
T TIGR03519 1 MKKILLLLLLLLLL 14 (292)
T ss_pred CceeehhhHHHHHh
Confidence 88886665555433
No 77
>PRK10780 periplasmic chaperone; Provisional
Probab=23.86 E-value=80 Score=23.71 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=8.1
Q ss_pred CCCCCCHHHHHHh
Q 032442 107 GGLDLDAGVFRQL 119 (140)
Q Consensus 107 g~lDLS~~aF~~l 119 (140)
.++|+++.+-++|
T Consensus 152 ~~~DIT~~Vik~l 164 (165)
T PRK10780 152 SDKDITADVLKQV 164 (165)
T ss_pred CCCCchHHHHHhh
Confidence 3577777666554
No 78
>PLN02179 carbonic anhydrase
Probab=23.45 E-value=2.8e+02 Score=22.36 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=11.9
Q ss_pred EEEEeCCCCCEEEEEEee
Q 032442 85 LRVTNRGTGAQVTVRIVD 102 (140)
Q Consensus 85 i~Vtn~~~g~sv~v~VvD 102 (140)
.+|+| +|.+|.+.+.+
T Consensus 93 ~~i~N--~Ghtv~v~~~~ 108 (235)
T PLN02179 93 AVIQS--RGHDVMVSWKG 108 (235)
T ss_pred EEEEE--CCeEEEEEecC
Confidence 57886 78888887753
No 79
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=23.05 E-value=1.2e+02 Score=24.88 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=16.6
Q ss_pred CCchhHHHHHH---HHHHHHhhhhcCCcceEEE
Q 032442 1 MGKLSLCALLF---LCSLAIAAAQSASNVRATS 30 (140)
Q Consensus 1 m~~~~~~~~~~---~~~~~~~~a~~~~~~~~tY 30 (140)
||+..|+++++ +++|++|++.....+-++.
T Consensus 1 ~k~~~~~~~~~~~~~~~~~~c~~~~~~~~va~v 33 (285)
T PRK03002 1 MRGKHIFIITALISILMLSACGQKNSSATVATA 33 (285)
T ss_pred CchhHHHHHHHHHHHHHHHHhcCCCCCCcEEEE
Confidence 77655553332 2344667666555566776
No 80
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=22.94 E-value=46 Score=26.66 Aligned_cols=19 Identities=32% Similarity=0.237 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhhhcCC
Q 032442 6 LCALLFLCSLAIAAAQSAS 24 (140)
Q Consensus 6 ~~~~~~~~~~~~~~a~~~~ 24 (140)
|++++-.++|++|++++.+
T Consensus 19 L~~laa~~lLagC~a~~~t 37 (204)
T COG3056 19 LFPLAAIFLLAGCAAPPTT 37 (204)
T ss_pred HHHHHHHHHHHhcCCCCce
Confidence 3444455777999998655
No 81
>COG5645 Predicted periplasmic lipoprotein [General function prediction only]
Probab=22.88 E-value=79 Score=21.80 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=11.0
Q ss_pred CCchhHHHHHHHHHHHHhhhh
Q 032442 1 MGKLSLCALLFLCSLAIAAAQ 21 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~ 21 (140)
|+++.|. +.+..+|++|+..
T Consensus 1 mr~i~l~-l~v~lllSGC~SV 20 (80)
T COG5645 1 MRNILLS-LMVLLLLSGCGSV 20 (80)
T ss_pred CceehHH-HHHHHHhCcccee
Confidence 5555333 2333567888874
No 82
>PRK10053 hypothetical protein; Provisional
Probab=22.84 E-value=84 Score=23.39 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=6.4
Q ss_pred CCchhHHHHHH
Q 032442 1 MGKLSLCALLF 11 (140)
Q Consensus 1 m~~~~~~~~~~ 11 (140)
|||+-|.++++
T Consensus 1 MKK~~~~~~~~ 11 (130)
T PRK10053 1 MKLQAIALASF 11 (130)
T ss_pred CcHHHHHHHHH
Confidence 89874444333
No 83
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=22.11 E-value=70 Score=26.53 Aligned_cols=23 Identities=35% Similarity=0.258 Sum_probs=15.0
Q ss_pred CCchhHHHHH-HHHHHHHhhhhcC
Q 032442 1 MGKLSLCALL-FLCSLAIAAAQSA 23 (140)
Q Consensus 1 m~~~~~~~~~-~~~~~~~~~a~~~ 23 (140)
|||+.|.+++ ..+.|++|...+.
T Consensus 1 Mkk~~l~~~l~sal~L~GCg~~s~ 24 (268)
T PF12262_consen 1 MKKLLLSSALASALGLAGCGGDSE 24 (268)
T ss_pred CchHHHHHHHHHHHHeeecCCCcc
Confidence 9999776444 4455688877433
No 84
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=21.91 E-value=63 Score=25.76 Aligned_cols=22 Identities=27% Similarity=0.156 Sum_probs=17.4
Q ss_pred CCchhHHHHHHHHHHHHhhhhc
Q 032442 1 MGKLSLCALLFLCSLAIAAAQS 22 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~~ 22 (140)
|+.++++++...++|++|+.-+
T Consensus 1 ~~~~r~~ll~~~l~LsGC~~~s 22 (191)
T PRK10718 1 MKSLRLLLLALPLLLTGCSTLS 22 (191)
T ss_pred CcchhhHHHHHHHHHhhccCCC
Confidence 7788888777778889998743
No 85
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=21.76 E-value=94 Score=25.99 Aligned_cols=13 Identities=38% Similarity=0.669 Sum_probs=8.5
Q ss_pred cceEEEeecCCCC
Q 032442 25 NVRATSHSYNPEQ 37 (140)
Q Consensus 25 ~~~~tY~~y~p~~ 37 (140)
+-|..+--|+|..
T Consensus 31 D~RIr~v~Y~p~~ 43 (292)
T PRK13861 31 DPRMRYLAYNPDQ 43 (292)
T ss_pred CCceEEEEeCCCC
Confidence 4566666678874
No 86
>PRK09733 putative fimbrial protein; Provisional
Probab=21.60 E-value=1.4e+02 Score=22.53 Aligned_cols=16 Identities=25% Similarity=-0.087 Sum_probs=6.8
Q ss_pred CCchhHHHHHHHHHHH
Q 032442 1 MGKLSLCALLFLCSLA 16 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (140)
|.|..|+.++++.+++
T Consensus 1 ~~k~~~~~~~~~~~~~ 16 (181)
T PRK09733 1 AFKKSLLVAGVAMILS 16 (181)
T ss_pred CchhHHHHHHHHHHHh
Confidence 4444455333333343
No 87
>TIGR02747 TraV type IV conjugative transfer system lipoprotein TraV. The TraV protein is a component of conjugative type IV secretion systems. TraV is an outer membrane lipoprotein and is believed to interact with the secretin TraK. The alignment contains three conserved cysteines in the N-terminal half.
Probab=21.52 E-value=59 Score=24.73 Aligned_cols=22 Identities=18% Similarity=0.017 Sum_probs=12.6
Q ss_pred CCchhHHHHHHHHHHHHhhhhc
Q 032442 1 MGKLSLCALLFLCSLAIAAAQS 22 (140)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~a~~ 22 (140)
|++..+.++++..+|++|||.-
T Consensus 1 m~~~~l~~~~~~alLtGCsag~ 22 (144)
T TIGR02747 1 MRIRFLLLIACVAFLTGCSAGC 22 (144)
T ss_pred CceeehhHHHHHHHhhcccCCC
Confidence 5555444443333389998843
No 88
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=20.45 E-value=80 Score=24.54 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=10.4
Q ss_pred CCCCcEEEEEEEEEe
Q 032442 123 DNSQNQLIVNYQFVN 137 (140)
Q Consensus 123 ~~~~G~~~V~w~~V~ 137 (140)
++.+....++|+.++
T Consensus 130 ~y~E~~a~~~~~v~~ 144 (180)
T PF07437_consen 130 NYQEANAGVRYTVIP 144 (180)
T ss_pred eEEEEeeeEEEEEec
Confidence 366777778887654
No 89
>COG3738 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.20 E-value=1.6e+02 Score=23.38 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=20.4
Q ss_pred hhhcCCcceEEEeecCCCC-----CCCCCcccceeecc
Q 032442 19 AAQSASNVRATSHSYNPEQ-----HGWDLNAVGAYCST 51 (140)
Q Consensus 19 ~a~~~~~~~~tY~~y~p~~-----~~~~~~~~~~~Ca~ 51 (140)
+|+...+|..+| ||+| .+.|....++-|++
T Consensus 38 ~Ar~QIgvTl~Y---DpaYr~l~yP~GDvpl~~GVCsD 72 (200)
T COG3738 38 AARAQIGVTLFY---DPAYRQLTYPGGDVPLERGVCSD 72 (200)
T ss_pred HHHhhcCeeEee---chhheeccCCCCCcccccCccHH
Confidence 345566777777 8774 45566667788987
No 90
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=20.18 E-value=2e+02 Score=16.84 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=25.0
Q ss_pred EEEEeCCCCCEEEEEEeeCCCCCCCCCCHHHHHHhhCCCCCCcEEEEEE
Q 032442 85 LRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLVGRDNSQNQLIVNY 133 (140)
Q Consensus 85 i~Vtn~~~g~sv~v~VvD~C~~g~lDLS~~aF~~l~g~~~~~G~~~V~w 133 (140)
++++|.++.--++-.|.-.|.--..+++. +.|.. -+.|.+.|+|
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~~~~~---~~i~P--Ges~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTAEYSK---KPIAP--GESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEeeCCc---ceECC--CCEEEEEEEC
Confidence 56788655555566677777544444444 22532 3557776664
No 91
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=20.02 E-value=1e+02 Score=23.64 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=15.6
Q ss_pred CCchhHH-HHHHHHHHHHhhhhcCCcceEEEeecCCC
Q 032442 1 MGKLSLC-ALLFLCSLAIAAAQSASNVRATSHSYNPE 36 (140)
Q Consensus 1 m~~~~~~-~~~~~~~~~~~~a~~~~~~~~tY~~y~p~ 36 (140)
|+|.-++ +++.+.+.+...++++..--..| |+|.
T Consensus 1 Mrr~~~l~~l~a~~l~~~~~~~a~~~~~~vy--ksPn 35 (149)
T COG3019 1 MRRRAFLRSLAALGLGSTGPAQAQATEMVVY--KSPN 35 (149)
T ss_pred CchhHHHHHHHHHHhhcccchhcceeeEEEE--eCCC
Confidence 6644333 33333434444455444333333 5665
Done!