BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032443
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 15 DTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74
D K+ N + + +DG I + +++C+LRG+ Y L N +A+ YK A++ D CYEA
Sbjct: 182 DEKNANKLLM----QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237
Query: 75 ECLIENHMLTCEQETSLLSSLEFGF---ED-GWLSSFYSCLIKKC 115
+ L+ NH+LT ++E L+ L + ED +L S Y + K
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282
>pdb|3HUR|A Chain A, Crystal Structure Of Alanine Racemase From Oenococcus Oeni
Length = 395
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 88 ETSLLSSLEFGFEDGWLSSFY-SCLIKKCRRYPFSGAIV 125
E +++L FG+ DGWL S +I +R P G I
Sbjct: 279 EDGYVATLPFGYNDGWLRRMQKSSVIINGKRMPIIGRIT 317
>pdb|1BT4|A Chain A, Phosphoserine Aminotransferase From Bacillus Circulans
Subsp. Alkalophilus
pdb|1W3U|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Circulans Var. Alkalophilus
pdb|2C0R|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Circulans Var. Alkalophilus At Ph 8.5
pdb|2C0R|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Circulans Var. Alkalophilus At Ph 8.5
Length = 362
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 43 RGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74
RG YEA+ N AQARL A++ +P Y+ L
Sbjct: 43 RGAVYEAVHNEAQARLL---ALLGNPTGYKVL 71
>pdb|3C8C|A Chain A, Crystal Structure Of Mcp_n And Cache Domains Of Methyl-
Accepting Chemotaxis Protein From Vibrio Cholerae
pdb|3C8C|B Chain B, Crystal Structure Of Mcp_n And Cache Domains Of Methyl-
Accepting Chemotaxis Protein From Vibrio Cholerae
Length = 240
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 30 DGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77
+ +IN+ + + GK Y + + WY +I + + Y AL+ L
Sbjct: 190 ESKINVDTHQVIINGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDEL 237
>pdb|4I8E|X Chain X, Gspb Plus Alpha-2,3-Sialyl (1-Thioethyl)galactose
Length = 391
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 14 YDTKDINVMYLDKDGEDGEINISSAICFLRGKAYE 48
+D N ++KD E +N+ S I RG+++E
Sbjct: 157 WDKAGYNTTIVEKDTERPVVNVPSEITVYRGESFE 191
>pdb|3QC5|X Chain X, Gspb
pdb|3QC6|X Chain X, Gspb
Length = 360
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 14 YDTKDINVMYLDKDGEDGEINISSAICFLRGKAYE 48
+D N ++KD E +N+ S I RG+++E
Sbjct: 142 WDKAGYNTTIVEKDTERPVVNVPSEITVYRGESFE 176
>pdb|1NMT|A Chain A, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|B Chain B, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|C Chain C, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1IYK|A Chain A, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYK|B Chain B, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYL|A Chain A, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|B Chain B, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|C Chain C, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|D Chain D, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
Length = 392
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 83 LTCEQETSLLSSLEFGFEDGWLSSFYSCLIKKCRRYPFSGAI 124
LTC+ T L +FG DG+L+ + + R +P G I
Sbjct: 335 LTCQDNTYFLKDCKFGSGDGFLNYY----LFNYRTFPMDGGI 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,411,772
Number of Sequences: 62578
Number of extensions: 164037
Number of successful extensions: 309
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 7
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)