BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032443
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana
GN=APC6 PE=2 SV=1
Length = 543
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/114 (81%), Positives = 100/114 (87%)
Query: 1 MLGDAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWY 60
MLGDAKVD+DG VYD KD NV+ DKDGED EINISSAICFLRGKAY AL N +QAR WY
Sbjct: 94 MLGDAKVDDDGIVYDAKDGNVIDFDKDGEDREINISSAICFLRGKAYGALQNRSQARQWY 153
Query: 61 KAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
KAAI ADPLCYEALECLIE+HMLT E+E+SLLSSL+F EDGWLSSFYSCLIKK
Sbjct: 154 KAAIKADPLCYEALECLIESHMLTSEEESSLLSSLQFSPEDGWLSSFYSCLIKK 207
>sp|Q1ZXE6|CDC16_DICDI Anaphase-promoting complex subunit 6 OS=Dictyostelium discoideum
GN=anapc6 PE=3 SV=1
Length = 865
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 54/87 (62%)
Query: 35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSS 94
I S+I L+GK YE++ N +A+ WY A++ D C+EA E L +NH+LT ++E SLL
Sbjct: 300 IRSSISCLKGKCYESMDNLKKAKFWYIKALLTDYNCFEAFESLTKNHLLTYQEEISLLEK 359
Query: 95 LEFGFEDGWLSSFYSCLIKKCRRYPFS 121
L+F +D W+ YS +KK F+
Sbjct: 360 LKFSSDDSWIKEIYSLSLKKYDSPKFT 386
>sp|P41889|CUT9_SCHPO Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cut9 PE=1 SV=2
Length = 671
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 15 DTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74
D K+ N + + +DG I + +++C+LRG+ Y L N +A+ YK A++ D CYEA
Sbjct: 182 DEKNANKLLM----QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237
Query: 75 ECLIENHMLTCEQETSLLSSLEFGF---ED-GWLSSFYSCLIKKC 115
+ L+ NH+LT ++E L+ L + ED +L S Y + K
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282
>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16
PE=1 SV=2
Length = 620
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%)
Query: 27 DGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86
D E + +I S+IC LRGK Y+AL N A YK A+ D C+EA + L +HMLT +
Sbjct: 120 DWEMSQSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQ 179
Query: 87 QETSLLSSLEFG 98
+E LL SL
Sbjct: 180 EEKELLESLPLS 191
>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16
PE=2 SV=1
Length = 620
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%)
Query: 27 DGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86
D E + +I S+IC LRGK Y+AL N A YK A+ D C+EA + L +HMLT +
Sbjct: 120 DWEMSQSSIKSSICLLRGKIYDALDNRTLATYSYKEALKLDVYCFEAFDLLTSHHMLTAQ 179
Query: 87 QETSLLSSLEFG 98
+E LL SL
Sbjct: 180 EEKELLDSLPLN 191
>sp|P09798|CDC16_YEAST Anaphase-promoting complex subunit CDC16 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC16 PE=1
SV=1
Length = 840
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 30 DGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQET 89
DG I + S++CFLRGK Y A N +AR ++ AI+ D +EA E L+ ++LT ++E
Sbjct: 352 DGGIKMESSLCFLRGKIYFAQNNFNKARDAFREAILVDIKNFEAFEMLLSKNLLTPQEEW 411
Query: 90 SLLSSL---EFGFEDGWLSSFYSCLIKK 114
L SL EFG + + + Y + K
Sbjct: 412 DLFDSLDFKEFGEDKEIMKNLYKINLSK 439
>sp|Q5HU70|LEPA_CAMJR Elongation factor 4 OS=Campylobacter jejuni (strain RM1221) GN=lepA
PE=3 SV=1
Length = 598
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL--------IENHM 82
G++ + I ++ KA EA+G +A+ + A + P+ + E L + +
Sbjct: 268 GDVQVGDTITLVKNKAKEAIGGFEKAKAFVFAGLY--PIETDKFEDLRDALDKLKLNDSS 325
Query: 83 LTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
+T E ETSL +L FGF G+L + +IK+
Sbjct: 326 ITYEPETSL--ALGFGFRVGFLGLLHMEVIKE 355
>sp|A1W018|LEPA_CAMJJ Elongation factor 4 OS=Campylobacter jejuni subsp. jejuni serotype
O:23/36 (strain 81-176) GN=lepA PE=3 SV=1
Length = 598
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL--------IENHM 82
G++ + I ++ KA EA+G +A+ + A + P+ + E L + +
Sbjct: 268 GDVQVGDTITLVKNKAKEAIGGFEKAKAFVFAGLY--PIETDKFEDLRDALDKLKLNDSS 325
Query: 83 LTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
+T E ETSL +L FGF G+L + +IK+
Sbjct: 326 ITYEPETSL--ALGFGFRVGFLGLLHMEVIKE 355
>sp|Q9PNR1|LEPA_CAMJE Elongation factor 4 OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=lepA PE=3 SV=1
Length = 598
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL--------IENHM 82
G++ + I ++ KA EA+G +A+ + A + P+ + E L + +
Sbjct: 268 GDVQVGDTITLVKNKAKEAIGGFEKAKAFVFAGLY--PIETDKFEDLRDALDKLKLNDSS 325
Query: 83 LTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
+T E ETSL +L FGF G+L + +IK+
Sbjct: 326 ITYEPETSL--ALGFGFRVGFLGLLHMEVIKE 355
>sp|A8FM79|LEPA_CAMJ8 Elongation factor 4 OS=Campylobacter jejuni subsp. jejuni serotype
O:6 (strain 81116 / NCTC 11828) GN=lepA PE=3 SV=1
Length = 598
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL--------IENHM 82
G++ + I ++ KA EA+G +A+ + A + P+ + E L + +
Sbjct: 268 GDVQVGDTITLVKNKAKEAIGGFEKAKAFVFAGLY--PIETDKFEDLRDALDKLKLNDSS 325
Query: 83 LTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
+T E ETSL +L FGF G+L + +IK+
Sbjct: 326 ITYEPETSL--ALGFGFRVGFLGLLHMEVIKE 355
>sp|Q8VD72|TTC8_MOUSE Tetratricopeptide repeat protein 8 OS=Mus musculus GN=Ttc8 PE=2
SV=1
Length = 515
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 19 INVMYLDKDGED---GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE 75
+ + L K G D GE+ + I + YE + N + A +YK + D EA+
Sbjct: 275 VTALNLFKQGLDKFPGEVTLLCGI----ARIYEEMNNSSSAAEYYKEVLKQDNTHVEAIA 330
Query: 76 CLIENHMLTCEQETSL 91
C+ NH + + E +L
Sbjct: 331 CIGSNHFYSDQPEVAL 346
>sp|Q8TAM2|TTC8_HUMAN Tetratricopeptide repeat protein 8 OS=Homo sapiens GN=TTC8 PE=1
SV=2
Length = 541
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 13 VYDTKD--INVMYLDKDGED---GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIAD 67
VY + D + + L K G D GE+ + I + YE + N + A +YK + D
Sbjct: 293 VYVSLDQPVTALNLFKQGLDKFPGEVTLLCGI----ARIYEEMNNMSSAAEYYKEVLKQD 348
Query: 68 PLCYEALECLIENHMLTCEQETSL 91
EA+ C+ NH + + E +L
Sbjct: 349 NTHVEAIACIGSNHFYSDQPEIAL 372
>sp|A7H311|LEPA_CAMJD Elongation factor 4 OS=Campylobacter jejuni subsp. doylei (strain
ATCC BAA-1458 / RM4099 / 269.97) GN=lepA PE=3 SV=1
Length = 596
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL--------IENHM 82
G++ + I ++ KA EA+G +A+ + A + P+ + E L + +
Sbjct: 266 GDVQVGDTITSVKNKAKEAIGGFEKAKAFVFAGLY--PIETDKFEDLRDALDKLKLNDSS 323
Query: 83 LTCEQETSLLSSLEFGFEDGWLSSFYSCLIKK 114
+T E ETSL +L FGF G+L + +IK+
Sbjct: 324 ITYEPETSL--ALGFGFRVGFLGLLHMEVIKE 353
>sp|Q983N4|SYI_RHILO Isoleucine--tRNA ligase OS=Rhizobium loti (strain MAFF303099)
GN=ileS PE=3 SV=2
Length = 993
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 53/144 (36%), Gaps = 26/144 (18%)
Query: 8 DEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIAD 67
DEDGNV + +N +D E+G + F G LGN A W + I D
Sbjct: 540 DEDGNVLKDEAVNQRIMDAFEEEG-----ADAWFAAGAKERFLGN-HDASKWKQVMDILD 593
Query: 68 PLCYEALECLIENHMLTCEQETSLLSSLEFGFED-----GWLSSFYSCLIKKC---RRYP 119
H+ T E L + E GW F+S L++ C R P
Sbjct: 594 VWFDSG-----STHVFTLEDRPDLKWPADVYLEGSDQHRGW---FHSSLLESCGTRGRAP 645
Query: 120 FSGAIVHNILL----RQVSHGAGN 139
+ + H + R++S GN
Sbjct: 646 YDTVVTHGFTMDEDGRKMSKSLGN 669
>sp|Q70EL2|UBP45_HUMAN Ubiquitin carboxyl-terminal hydrolase 45 OS=Homo sapiens GN=USP45
PE=1 SV=3
Length = 814
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 25 DKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLC--------YEALEC 76
D D E+ +NIS+ +CFL GK + + ++ I C + ++E
Sbjct: 573 DFDRENQPLNISNNLCFLEGKHLRSYSPQNAFQTLSQSYITTSKECSIQSCLYQFTSMEL 632
Query: 77 LIENHMLTCE 86
L+ N+ L CE
Sbjct: 633 LMGNNKLLCE 642
>sp|O60067|TAPT1_SCHPO Protein TAPT1 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPBC13G1.05 PE=1 SV=1
Length = 649
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 14/53 (26%)
Query: 60 YKAAIIADPLC----YEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFY 108
Y IAD LC + L+CL NH+L S F GW++ FY
Sbjct: 263 YNVLEIADRLCCALGQDVLDCLFSNHIL----------SFNFWNPAGWMTFFY 305
>sp|Q86TV6|TTC7B_HUMAN Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1
SV=3
Length = 843
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77
+S + ++RG+ E G+ +AR WY+ A+ P ++++ L
Sbjct: 728 MSHNVLYMRGQIAELRGSMDEARRWYEEALAISPTHVKSMQRL 770
>sp|O94614|CHR4_SCHPO Chitin synthase regulatory factor 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=chr4 PE=1 SV=4
Length = 633
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 17 KDINVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE- 75
+D+ M+ ++ G N FL G ++ GN QA WY A A EA+E
Sbjct: 496 EDLAFMHAERASMAGNANAQ----FLMGYLFDTRGNTEQATYWYNEAAKAGH--SEAIER 549
Query: 76 -CLIENHMLTCEQE 88
L+EN + E E
Sbjct: 550 LALLENQIQEPEPE 563
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,024,170
Number of Sequences: 539616
Number of extensions: 1957461
Number of successful extensions: 3679
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3666
Number of HSP's gapped (non-prelim): 34
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)