Query 032443
Match_columns 140
No_of_seqs 109 out of 139
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 14:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1173 Anaphase-promoting com 99.9 2.6E-26 5.6E-31 207.5 4.7 133 1-134 104-241 (611)
2 PF00515 TPR_1: Tetratricopept 98.2 4.4E-06 9.6E-11 47.7 4.6 33 38-70 2-34 (34)
3 PF07719 TPR_2: Tetratricopept 97.9 3.2E-05 6.8E-10 43.5 4.8 33 38-70 2-34 (34)
4 PF13181 TPR_8: Tetratricopept 97.9 2.9E-05 6.2E-10 44.0 4.0 33 37-69 1-33 (34)
5 PF13428 TPR_14: Tetratricopep 97.5 0.00052 1.1E-08 41.8 5.7 39 40-78 4-42 (44)
6 PF13414 TPR_11: TPR repeat; P 97.4 0.00037 8E-09 44.5 5.2 47 37-83 3-49 (69)
7 smart00028 TPR Tetratricopepti 97.1 0.00091 2E-08 34.0 3.7 32 38-69 2-33 (34)
8 PF13176 TPR_7: Tetratricopept 97.0 0.0015 3.3E-08 38.4 4.1 27 39-66 2-28 (36)
9 PF13414 TPR_11: TPR repeat; P 96.7 0.0032 6.9E-08 40.1 4.2 33 36-68 36-69 (69)
10 PF13432 TPR_16: Tetratricopep 96.3 0.008 1.7E-07 38.0 4.3 37 42-78 2-38 (65)
11 PF13432 TPR_16: Tetratricopep 95.6 0.033 7.1E-07 35.2 4.7 35 36-70 30-64 (65)
12 PF13429 TPR_15: Tetratricopep 95.3 0.041 9E-07 44.0 5.4 60 36-95 145-206 (280)
13 PRK11189 lipoprotein NlpI; Pro 95.1 0.064 1.4E-06 44.2 6.0 44 36-79 63-106 (296)
14 KOG4162 Predicted calmodulin-b 95.0 0.033 7.2E-07 53.4 4.8 46 35-80 682-727 (799)
15 PF13371 TPR_9: Tetratricopept 95.0 0.057 1.2E-06 34.5 4.6 39 36-74 28-66 (73)
16 cd00189 TPR Tetratricopeptide 94.5 0.13 2.8E-06 30.8 4.9 40 39-78 36-75 (100)
17 cd00189 TPR Tetratricopeptide 94.3 0.19 4E-06 30.0 5.3 41 39-79 2-42 (100)
18 TIGR02552 LcrH_SycD type III s 94.2 0.089 1.9E-06 36.9 4.2 45 38-82 52-96 (135)
19 PLN03088 SGT1, suppressor of 94.0 0.14 3.1E-06 43.7 6.0 71 37-107 36-113 (356)
20 PRK11189 lipoprotein NlpI; Pro 94.0 0.16 3.5E-06 41.9 6.0 46 38-83 237-283 (296)
21 PF13374 TPR_10: Tetratricopep 93.9 0.17 3.6E-06 28.8 4.4 29 37-66 3-31 (42)
22 PRK15359 type III secretion sy 93.9 0.13 2.9E-06 38.2 5.0 40 40-79 27-66 (144)
23 KOG0553 TPR repeat-containing 93.9 0.1 2.3E-06 45.3 4.9 30 44-73 156-185 (304)
24 PF13424 TPR_12: Tetratricopep 93.7 0.15 3.3E-06 33.1 4.4 30 37-66 5-34 (78)
25 PRK15359 type III secretion sy 93.5 0.22 4.7E-06 37.0 5.5 42 38-79 59-100 (144)
26 PRK10370 formate-dependent nit 93.5 0.24 5.3E-06 39.0 6.0 61 39-99 75-141 (198)
27 PF09976 TPR_21: Tetratricopep 93.3 0.12 2.7E-06 37.9 3.8 30 35-64 116-145 (145)
28 PF13174 TPR_6: Tetratricopept 93.2 0.16 3.5E-06 27.7 3.3 29 41-69 4-32 (33)
29 PF14853 Fis1_TPR_C: Fis1 C-te 92.6 0.39 8.4E-06 31.4 5.0 36 39-75 4-39 (53)
30 PRK02603 photosystem I assembl 92.5 0.42 9.1E-06 35.9 5.9 41 37-77 72-112 (172)
31 TIGR02552 LcrH_SycD type III s 92.1 0.39 8.4E-06 33.6 4.9 46 38-83 18-63 (135)
32 PLN03088 SGT1, suppressor of 91.9 0.44 9.5E-06 40.7 5.9 40 38-77 71-110 (356)
33 KOG1129 TPR repeat-containing 91.8 0.07 1.5E-06 48.0 0.9 54 39-92 292-345 (478)
34 PF13424 TPR_12: Tetratricopep 91.4 0.36 7.8E-06 31.3 3.8 30 37-66 46-75 (78)
35 KOG4626 O-linked N-acetylgluco 91.1 0.32 7E-06 46.9 4.6 35 43-77 394-428 (966)
36 TIGR00990 3a0801s09 mitochondr 91.1 0.54 1.2E-05 42.2 5.9 41 37-77 399-439 (615)
37 TIGR00990 3a0801s09 mitochondr 90.9 0.57 1.2E-05 42.1 5.9 44 38-81 161-204 (615)
38 TIGR02521 type_IV_pilW type IV 90.9 1.1 2.3E-05 32.3 6.2 37 41-77 69-105 (234)
39 PRK10153 DNA-binding transcrip 90.8 0.64 1.4E-05 42.3 6.1 50 30-79 332-384 (517)
40 PF14559 TPR_19: Tetratricopep 90.5 0.58 1.3E-05 29.3 4.1 32 39-70 27-58 (68)
41 TIGR02795 tol_pal_ybgF tol-pal 90.5 0.94 2E-05 30.3 5.3 34 37-70 39-72 (119)
42 KOG0543 FKBP-type peptidyl-pro 90.3 0.57 1.2E-05 42.1 5.2 39 41-79 295-333 (397)
43 TIGR02521 type_IV_pilW type IV 90.2 1.2 2.7E-05 32.0 6.1 42 39-80 137-178 (234)
44 TIGR02917 PEP_TPR_lipo putativ 90.0 0.87 1.9E-05 39.7 6.0 47 36-82 124-170 (899)
45 PRK15363 pathogenicity island 89.6 0.49 1.1E-05 37.4 3.9 41 43-83 75-115 (157)
46 PRK12370 invasion protein regu 89.4 0.91 2E-05 40.7 5.9 50 30-79 251-303 (553)
47 PF12895 Apc3: Anaphase-promot 89.2 0.81 1.8E-05 30.4 4.2 27 37-63 58-84 (84)
48 KOG2002 TPR-containing nuclear 89.0 0.55 1.2E-05 46.4 4.4 76 36-111 306-389 (1018)
49 KOG1155 Anaphase-promoting com 88.8 3 6.5E-05 38.9 8.8 75 35-113 162-237 (559)
50 PRK14720 transcript cleavage f 88.7 0.73 1.6E-05 45.2 5.0 38 41-78 120-157 (906)
51 CHL00033 ycf3 photosystem I as 88.7 1.6 3.5E-05 32.5 5.9 34 36-69 34-67 (168)
52 PRK10153 DNA-binding transcrip 88.6 0.61 1.3E-05 42.4 4.3 32 40-71 456-487 (517)
53 KOG1125 TPR repeat-containing 88.2 0.6 1.3E-05 43.8 4.0 36 43-78 436-471 (579)
54 PRK11788 tetratricopeptide rep 88.1 1.3 2.7E-05 36.3 5.4 46 36-81 34-79 (389)
55 KOG0553 TPR repeat-containing 88.0 0.83 1.8E-05 39.8 4.5 66 37-102 115-183 (304)
56 PF13431 TPR_17: Tetratricopep 87.9 0.43 9.3E-06 27.9 1.9 21 59-79 1-21 (34)
57 KOG1125 TPR repeat-containing 87.8 0.8 1.7E-05 42.9 4.5 41 40-81 323-363 (579)
58 PRK12370 invasion protein regu 87.8 1.4 3E-05 39.6 5.9 40 40-79 341-380 (553)
59 KOG1127 TPR repeat-containing 87.5 0.75 1.6E-05 46.0 4.3 56 36-94 492-547 (1238)
60 KOG0550 Molecular chaperone (D 87.3 0.3 6.4E-06 44.7 1.4 35 40-74 206-240 (486)
61 PLN02789 farnesyltranstransfer 87.3 2.5 5.5E-05 36.1 6.9 61 38-98 72-138 (320)
62 COG3063 PilF Tfp pilus assembl 87.1 0.74 1.6E-05 39.2 3.6 41 44-84 146-186 (250)
63 PRK09782 bacteriophage N4 rece 87.0 2 4.4E-05 42.2 7.0 85 34-119 41-128 (987)
64 KOG4162 Predicted calmodulin-b 86.7 1.1 2.3E-05 43.5 4.8 35 44-78 725-761 (799)
65 KOG4507 Uncharacterized conser 86.2 0.9 1.9E-05 43.7 3.9 40 39-78 678-717 (886)
66 PRK02603 photosystem I assembl 86.2 2.4 5.3E-05 31.8 5.7 36 36-71 34-69 (172)
67 TIGR02917 PEP_TPR_lipo putativ 86.0 2.2 4.8E-05 37.2 6.0 42 38-79 466-507 (899)
68 TIGR02795 tol_pal_ybgF tol-pal 85.8 2.4 5.3E-05 28.2 5.0 38 39-76 78-115 (119)
69 PLN02789 farnesyltranstransfer 85.6 1.3 2.9E-05 37.8 4.4 61 41-101 146-216 (320)
70 COG4235 Cytochrome c biogenesi 85.4 1.9 4.1E-05 37.2 5.3 60 40-99 159-224 (287)
71 PRK11447 cellulose synthase su 85.3 3.5 7.5E-05 40.4 7.6 57 40-96 388-445 (1157)
72 KOG2002 TPR-containing nuclear 85.3 1 2.2E-05 44.6 4.0 41 44-84 206-246 (1018)
73 PF13371 TPR_9: Tetratricopept 85.0 2 4.3E-05 27.2 4.1 34 44-77 2-35 (73)
74 PF14559 TPR_19: Tetratricopep 84.8 2.1 4.6E-05 26.7 4.1 49 48-96 2-52 (68)
75 PLN03098 LPA1 LOW PSII ACCUMUL 83.7 2.9 6.2E-05 38.3 5.9 35 39-73 77-111 (453)
76 KOG0548 Molecular co-chaperone 83.6 1.9 4.2E-05 40.2 4.8 43 40-82 429-471 (539)
77 PRK11788 tetratricopeptide rep 83.3 3.7 8.1E-05 33.6 5.9 45 38-82 108-152 (389)
78 KOG1126 DNA-binding cell divis 83.1 1.2 2.7E-05 42.2 3.4 75 20-96 508-584 (638)
79 PF14929 TAF1_subA: TAF RNA Po 82.8 5.7 0.00012 37.0 7.6 76 39-115 344-425 (547)
80 PF04212 MIT: MIT (microtubule 82.5 3.7 8E-05 27.0 4.7 29 37-65 5-33 (69)
81 KOG1155 Anaphase-promoting com 82.4 2.9 6.3E-05 39.0 5.4 43 38-80 433-475 (559)
82 PF04733 Coatomer_E: Coatomer 82.4 1.8 4E-05 36.3 3.9 71 38-108 202-276 (290)
83 COG2976 Uncharacterized protei 82.3 2.6 5.7E-05 35.0 4.7 40 29-68 151-190 (207)
84 KOG2076 RNA polymerase III tra 82.2 2 4.4E-05 42.1 4.6 45 37-81 449-493 (895)
85 COG4785 NlpI Lipoprotein NlpI, 82.0 2.1 4.5E-05 37.0 4.0 44 34-77 62-105 (297)
86 COG3063 PilF Tfp pilus assembl 81.9 6.1 0.00013 33.7 6.8 47 31-77 29-75 (250)
87 PRK15363 pathogenicity island 81.9 2.3 5.1E-05 33.6 4.1 29 37-66 104-132 (157)
88 PF03704 BTAD: Bacterial trans 81.4 6.6 0.00014 28.3 6.1 44 43-86 68-111 (146)
89 CHL00033 ycf3 photosystem I as 81.0 8.3 0.00018 28.6 6.6 42 39-80 74-115 (168)
90 KOG4626 O-linked N-acetylgluco 80.8 2.2 4.7E-05 41.5 4.1 41 37-78 355-395 (966)
91 PRK11447 cellulose synthase su 80.4 4.1 8.8E-05 39.9 6.0 42 39-80 605-646 (1157)
92 COG2956 Predicted N-acetylgluc 80.3 2.2 4.7E-05 38.3 3.7 46 29-75 173-218 (389)
93 PF12569 NARP1: NMDA receptor- 79.8 9.3 0.0002 35.1 7.8 46 36-81 37-82 (517)
94 TIGR03302 OM_YfiO outer membra 79.6 3.5 7.7E-05 31.7 4.4 34 39-72 72-105 (235)
95 KOG2003 TPR repeat-containing 79.0 0.82 1.8E-05 43.1 0.7 31 44-74 497-527 (840)
96 KOG1126 DNA-binding cell divis 77.9 2.9 6.2E-05 39.8 4.0 37 36-72 590-626 (638)
97 KOG4234 TPR repeat-containing 77.8 3.9 8.5E-05 34.9 4.4 36 43-78 174-209 (271)
98 PF06552 TOM20_plant: Plant sp 77.5 2.1 4.6E-05 35.0 2.6 42 36-77 79-120 (186)
99 PRK10370 formate-dependent nit 77.3 4.6 9.9E-05 31.8 4.4 36 38-73 145-180 (198)
100 PF13429 TPR_15: Tetratricopep 77.3 5.3 0.00012 31.9 4.9 40 41-80 218-257 (280)
101 KOG1128 Uncharacterized conser 76.4 2.2 4.9E-05 41.2 2.9 59 40-98 522-583 (777)
102 PF09295 ChAPs: ChAPs (Chs5p-A 76.4 7.8 0.00017 34.5 6.1 63 37-99 234-298 (395)
103 PLN03098 LPA1 LOW PSII ACCUMUL 76.0 6.3 0.00014 36.1 5.5 34 38-71 113-146 (453)
104 PF10516 SHNi-TPR: SHNi-TPR; 75.2 5.8 0.00013 24.3 3.6 28 40-67 4-31 (38)
105 PRK15174 Vi polysaccharide exp 74.6 8.7 0.00019 35.5 6.1 42 40-81 113-154 (656)
106 smart00671 SEL1 Sel1-like repe 74.2 2.9 6.2E-05 23.1 1.9 27 38-66 8-34 (36)
107 KOG1173 Anaphase-promoting com 74.2 4.9 0.00011 38.1 4.4 52 44-97 496-547 (611)
108 cd02682 MIT_AAA_Arch MIT: doma 73.9 8 0.00017 27.1 4.5 59 36-119 5-63 (75)
109 KOG2076 RNA polymerase III tra 72.6 15 0.00032 36.4 7.3 57 43-99 213-272 (895)
110 PF12688 TPR_5: Tetratrico pep 72.4 14 0.00031 27.4 5.8 75 39-113 3-86 (120)
111 KOG3824 Huntingtin interacting 71.8 2.3 5E-05 38.4 1.7 56 43-98 156-221 (472)
112 PF12895 Apc3: Anaphase-promot 71.6 5.4 0.00012 26.3 3.1 38 36-74 24-61 (84)
113 PRK10803 tol-pal system protei 71.0 11 0.00023 31.5 5.4 71 39-120 182-252 (263)
114 PF09986 DUF2225: Uncharacteri 69.4 11 0.00024 30.5 5.0 34 31-65 160-193 (214)
115 PF08328 ASL_C: Adenylosuccina 68.8 6.8 0.00015 29.9 3.4 35 67-101 68-102 (115)
116 PRK15331 chaperone protein Sic 67.6 6.3 0.00014 31.5 3.2 22 44-65 112-133 (165)
117 cd02656 MIT MIT: domain contai 67.2 16 0.00034 24.3 4.7 25 41-65 10-34 (75)
118 PF10373 EST1_DNA_bind: Est1 D 66.8 4.9 0.00011 31.6 2.4 23 56-78 1-23 (278)
119 PRK09782 bacteriophage N4 rece 66.1 15 0.00033 36.3 6.0 39 39-77 611-649 (987)
120 KOG1127 TPR repeat-containing 65.9 3.9 8.5E-05 41.2 2.0 41 43-83 568-608 (1238)
121 PRK10747 putative protoheme IX 65.2 11 0.00024 32.4 4.4 28 39-66 363-390 (398)
122 KOG0547 Translocase of outer m 64.8 6.8 0.00015 36.9 3.2 41 37-77 394-434 (606)
123 cd05804 StaR_like StaR_like; a 64.5 20 0.00043 29.0 5.6 37 41-77 118-154 (355)
124 smart00745 MIT Microtubule Int 63.7 19 0.00041 23.9 4.5 26 40-65 11-36 (77)
125 KOG1174 Anaphase-promoting com 62.6 16 0.00035 34.1 5.1 40 38-77 472-511 (564)
126 PRK14574 hmsH outer membrane p 61.4 18 0.00039 35.1 5.5 38 43-80 108-145 (822)
127 PF12569 NARP1: NMDA receptor- 61.2 17 0.00037 33.4 5.1 37 39-75 196-232 (517)
128 KOG0550 Molecular chaperone (D 61.0 9.2 0.0002 35.3 3.3 33 43-75 255-287 (486)
129 PF02259 FAT: FAT domain; Int 60.5 26 0.00057 28.1 5.6 48 31-78 246-299 (352)
130 KOG3081 Vesicle coat complex C 60.4 20 0.00043 31.4 5.1 63 45-107 215-281 (299)
131 KOG4648 Uncharacterized conser 59.9 6.8 0.00015 35.9 2.3 30 41-70 101-130 (536)
132 KOG2300 Uncharacterized conser 58.7 18 0.0004 34.2 4.9 54 28-83 436-489 (629)
133 PRK15174 Vi polysaccharide exp 58.5 27 0.00059 32.3 6.0 33 44-76 291-323 (656)
134 PF14938 SNAP: Soluble NSF att 58.5 14 0.0003 30.3 3.7 33 34-66 111-144 (282)
135 PRK10049 pgaA outer membrane p 58.4 23 0.0005 33.2 5.6 38 41-78 363-400 (765)
136 KOG0548 Molecular co-chaperone 58.0 17 0.00037 34.1 4.5 40 42-81 75-114 (539)
137 PRK10049 pgaA outer membrane p 57.5 25 0.00055 33.0 5.7 40 40-79 119-158 (765)
138 KOG0551 Hsp90 co-chaperone CNS 57.3 9.7 0.00021 34.3 2.8 62 34-95 116-193 (390)
139 cd02683 MIT_1 MIT: domain cont 57.3 25 0.00054 24.3 4.3 29 37-65 6-34 (77)
140 PF12862 Apc5: Anaphase-promot 57.0 25 0.00055 24.3 4.3 26 41-66 45-70 (94)
141 PF07721 TPR_4: Tetratricopept 56.7 18 0.00039 19.5 2.9 23 39-61 3-25 (26)
142 COG5010 TadD Flp pilus assembl 56.1 16 0.00034 31.3 3.7 35 43-77 106-140 (257)
143 PRK14720 transcript cleavage f 56.0 29 0.00062 34.5 5.9 59 45-133 231-289 (906)
144 PF08238 Sel1: Sel1 repeat; I 55.7 33 0.00071 19.0 4.0 15 52-66 23-37 (39)
145 PF13281 DUF4071: Domain of un 55.2 14 0.00031 32.9 3.5 42 37-78 217-267 (374)
146 TIGR03302 OM_YfiO outer membra 55.1 49 0.0011 25.3 6.1 36 36-71 32-67 (235)
147 cd02679 MIT_spastin MIT: domai 55.0 25 0.00055 24.7 4.1 30 36-65 7-36 (79)
148 KOG4642 Chaperone-dependent E3 54.8 38 0.00082 29.5 5.8 78 42-119 49-135 (284)
149 cd05804 StaR_like StaR_like; a 54.6 54 0.0012 26.5 6.5 38 38-75 44-81 (355)
150 COG5010 TadD Flp pilus assembl 53.9 21 0.00045 30.6 4.1 50 37-86 134-183 (257)
151 PF00140 Sigma70_r1_2: Sigma-7 53.5 9.1 0.0002 23.0 1.4 21 74-94 8-28 (37)
152 PF14771 DUF4476: Domain of un 53.3 30 0.00066 24.0 4.3 43 72-114 28-72 (95)
153 PRK10803 tol-pal system protei 52.8 38 0.00082 28.2 5.4 39 36-75 217-255 (263)
154 PRK11906 transcriptional regul 51.9 32 0.0007 31.7 5.3 76 39-114 340-425 (458)
155 smart00386 HAT HAT (Half-A-TPR 51.8 34 0.00073 17.7 4.0 29 51-79 1-29 (33)
156 KOG0495 HAT repeat protein [RN 51.4 13 0.00028 36.5 2.7 39 39-77 687-725 (913)
157 cd02681 MIT_calpain7_1 MIT: do 50.7 37 0.00079 23.6 4.3 29 37-65 6-34 (76)
158 KOG3060 Uncharacterized conser 50.5 24 0.00053 30.7 4.0 36 44-79 161-196 (289)
159 KOG0545 Aryl-hydrocarbon recep 49.6 22 0.00048 31.2 3.6 32 39-70 266-297 (329)
160 KOG1129 TPR repeat-containing 49.2 11 0.00024 34.3 1.9 43 36-78 394-436 (478)
161 cd02678 MIT_VPS4 MIT: domain c 48.0 48 0.001 22.3 4.5 28 38-65 7-34 (75)
162 PRK10747 putative protoheme IX 47.9 39 0.00084 29.0 4.9 41 42-82 158-198 (398)
163 COG2956 Predicted N-acetylgluc 47.9 22 0.00047 32.1 3.4 37 38-74 36-72 (389)
164 KOG0624 dsRNA-activated protei 45.3 39 0.00085 31.1 4.7 83 41-128 110-212 (504)
165 KOG0547 Translocase of outer m 44.0 29 0.00064 32.9 3.8 36 41-76 119-164 (606)
166 PRK10866 outer membrane biogen 44.0 1.4E+02 0.0031 24.2 7.4 43 40-82 72-114 (243)
167 cd02677 MIT_SNX15 MIT: domain 43.6 49 0.0011 22.8 4.0 30 36-65 5-34 (75)
168 PF10300 DUF3808: Protein of u 43.5 31 0.00067 30.9 3.7 55 39-99 269-323 (468)
169 COG0457 NrfG FOG: TPR repeat [ 43.1 63 0.0014 21.3 4.4 29 41-69 133-162 (291)
170 KOG3824 Huntingtin interacting 41.8 84 0.0018 28.7 6.2 45 31-76 111-155 (472)
171 PF14293 YWFCY: YWFCY protein 40.8 21 0.00045 24.5 1.8 28 50-77 12-39 (61)
172 PHA02537 M terminase endonucle 40.4 51 0.0011 27.5 4.4 42 30-71 162-212 (230)
173 COG1729 Uncharacterized protei 40.2 41 0.00089 28.7 3.8 75 32-118 174-248 (262)
174 KOG1156 N-terminal acetyltrans 39.2 51 0.0011 32.0 4.6 43 34-76 71-114 (700)
175 PF10579 Rapsyn_N: Rapsyn N-te 39.2 71 0.0015 22.9 4.3 41 49-91 18-58 (80)
176 COG4785 NlpI Lipoprotein NlpI, 37.4 31 0.00066 30.0 2.6 33 39-72 240-272 (297)
177 KOG2581 26S proteasome regulat 36.2 46 0.00099 30.9 3.7 37 36-74 247-283 (493)
178 PRK11906 transcriptional regul 35.5 58 0.0013 30.1 4.3 49 36-84 252-308 (458)
179 PF01535 PPR: PPR repeat; Int 35.0 58 0.0012 16.8 2.7 23 45-67 8-30 (31)
180 KOG4279 Serine/threonine prote 34.7 16 0.00034 36.5 0.6 56 37-92 278-346 (1226)
181 KOG1840 Kinesin light chain [C 33.3 64 0.0014 29.9 4.2 36 33-68 237-272 (508)
182 cd02684 MIT_2 MIT: domain cont 32.5 84 0.0018 21.5 3.8 26 41-66 10-35 (75)
183 PF12739 TRAPPC-Trs85: ER-Golg 32.2 65 0.0014 28.3 3.9 34 33-66 366-399 (414)
184 PF08311 Mad3_BUB1_I: Mad3/BUB 32.1 98 0.0021 22.9 4.3 29 36-64 98-126 (126)
185 PF13226 DUF4034: Domain of un 31.4 68 0.0015 27.5 3.8 30 50-79 112-141 (277)
186 KOG0551 Hsp90 co-chaperone CNS 29.9 1.7E+02 0.0036 26.7 6.1 53 40-92 155-211 (390)
187 PF09976 TPR_21: Tetratricopep 29.7 1.7E+02 0.0036 21.2 5.2 33 36-68 47-79 (145)
188 TIGR00540 hemY_coli hemY prote 29.4 95 0.0021 26.6 4.4 18 44-61 342-359 (409)
189 TIGR00540 hemY_coli hemY prote 29.3 90 0.002 26.8 4.3 37 41-77 303-341 (409)
190 PF04184 ST7: ST7 protein; In 28.5 86 0.0019 29.6 4.2 43 51-93 182-224 (539)
191 KOG0495 HAT repeat protein [RN 28.3 65 0.0014 31.8 3.5 53 44-96 824-878 (913)
192 TIGR00756 PPR pentatricopeptid 28.1 96 0.0021 16.0 3.5 24 45-68 8-31 (35)
193 KOG1308 Hsp70-interacting prot 27.3 64 0.0014 29.2 3.0 30 40-69 185-214 (377)
194 PRK15179 Vi polysaccharide bio 26.7 1.6E+02 0.0034 28.2 5.7 30 44-73 93-122 (694)
195 cd02680 MIT_calpain7_2 MIT: do 26.4 1.3E+02 0.0029 20.9 4.0 30 37-66 5-35 (75)
196 PRK15331 chaperone protein Sic 26.4 44 0.00095 26.7 1.7 39 44-82 78-116 (165)
197 KOG0546 HSP90 co-chaperone CPR 25.6 1.3E+02 0.0029 27.1 4.7 48 39-86 311-358 (372)
198 PF11817 Foie-gras_1: Foie gra 25.3 1.7E+02 0.0037 23.7 5.0 33 32-64 173-205 (247)
199 KOG0376 Serine-threonine phosp 24.9 58 0.0013 30.3 2.4 20 51-70 18-37 (476)
200 PF10151 DUF2359: Uncharacteri 24.6 65 0.0014 29.7 2.6 33 53-85 166-198 (469)
201 KOG4444 Peroxisomal assembly p 24.2 1.4E+02 0.0031 26.8 4.6 55 56-110 72-126 (359)
202 PF08631 SPO22: Meiosis protei 23.7 1.4E+02 0.0031 24.4 4.3 35 32-66 30-65 (278)
203 PF06552 TOM20_plant: Plant sp 23.6 1.1E+02 0.0023 25.2 3.5 37 51-87 49-89 (186)
204 cd08785 CARD_CARD9-like Caspas 23.4 2.8E+02 0.006 19.7 5.8 44 55-98 3-46 (86)
205 KOG1840 Kinesin light chain [C 23.3 1.4E+02 0.0031 27.7 4.6 29 37-66 200-228 (508)
206 KOG4648 Uncharacterized conser 22.9 88 0.0019 29.0 3.1 36 42-77 170-205 (536)
207 KOG1174 Anaphase-promoting com 22.8 1.1E+02 0.0023 28.9 3.6 46 40-85 337-382 (564)
208 TIGR02568 LcrE type III secret 22.8 1.6E+02 0.0035 24.1 4.5 42 40-81 138-181 (240)
209 KOG2003 TPR repeat-containing 22.8 2.1E+02 0.0045 27.6 5.5 26 44-69 565-590 (840)
210 cd07261 Glo_EDI_BRP_like_11 Th 22.7 75 0.0016 21.2 2.1 20 50-69 6-25 (114)
211 KOG3616 Selective LIM binding 22.5 87 0.0019 31.9 3.2 24 39-62 663-686 (1636)
212 PRK04841 transcriptional regul 22.4 1.7E+02 0.0038 27.2 5.0 35 36-70 730-764 (903)
213 COG4783 Putative Zn-dependent 22.0 2.1E+02 0.0045 26.8 5.4 40 40-79 411-450 (484)
214 KOG0543 FKBP-type peptidyl-pro 22.0 1.1E+02 0.0025 27.7 3.6 33 44-76 264-296 (397)
215 cd08810 CARD_BCL10 Caspase act 21.8 2.4E+02 0.0052 20.1 4.6 40 54-93 2-41 (84)
216 smart00114 CARD Caspase recrui 21.4 1.6E+02 0.0034 20.0 3.6 38 60-98 12-49 (88)
217 COG3071 HemY Uncharacterized e 21.4 1.2E+02 0.0027 27.6 3.8 28 38-65 362-389 (400)
218 PF07720 TPR_3: Tetratricopept 21.4 1.9E+02 0.0042 17.1 3.6 27 44-70 8-36 (36)
219 PF01239 PPTA: Protein prenylt 21.2 1.6E+02 0.0035 16.1 3.0 20 57-76 3-22 (31)
220 KOG3617 WD40 and TPR repeat-co 21.1 90 0.002 31.9 3.0 27 38-64 968-994 (1416)
221 PF10602 RPN7: 26S proteasome 20.7 1E+02 0.0023 23.9 2.8 40 29-68 27-67 (177)
222 PF02268 TFIIA_gamma_N: Transc 20.5 91 0.002 20.3 2.0 22 71-92 16-37 (49)
223 KOG4814 Uncharacterized conser 20.4 71 0.0015 31.5 2.1 27 45-71 402-428 (872)
224 cd01671 CARD Caspase activatio 20.2 1.7E+02 0.0037 19.0 3.4 33 62-94 6-39 (80)
225 PF03039 IL12: Interleukin-12 20.2 1.4E+02 0.003 25.2 3.6 68 38-113 121-194 (219)
No 1
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.6e-26 Score=207.50 Aligned_cols=133 Identities=38% Similarity=0.539 Sum_probs=116.8
Q ss_pred CCCCcccccCCCcccccc-cchhccCCCCCCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 1 MLGDAKVDEDGNVYDTKD-INVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 1 ~l~~~~~~~~g~v~~~~~-~~~~~~~~~~~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+||+.+++..+-..++.+ ++.+..+...++++|+++|||||||||+|.+++||++|++||++||..|++|||||++||+
T Consensus 104 vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs 183 (611)
T KOG1173|consen 104 VLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVS 183 (611)
T ss_pred HhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 466667778888888888 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhcCCCCc----hhHHHHHHHHHhhhccCCCcchhhhhccceeeecc
Q 032443 80 NHMLTCEQETSLLSSLEFGF----EDGWLSSFYSCLIKKCRRYPFSGAIVHNILLRQVS 134 (140)
Q Consensus 80 ~~lLt~~EE~eLl~sL~f~~----e~~~lk~lY~srL~Ky~~~~~~~~~~~~~~~~~~~ 134 (140)
+||||++|||+|+.+||++. +.+.++.+|..++.|+.+....- ..|+.++-.+.
T Consensus 184 ~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~-r~~~~sl~~l~ 241 (611)
T KOG1173|consen 184 AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLT-RNEDESLIGLA 241 (611)
T ss_pred HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccc-cCchhhhhhhh
Confidence 99999999999999999983 66899999999988888776552 35555443333
No 2
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.17 E-value=4.4e-06 Score=47.70 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
-.++.+|.+|..+++++.|+.+|++||++||.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467889999999999999999999999999975
No 3
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.91 E-value=3.2e-05 Score=43.52 Aligned_cols=33 Identities=30% Similarity=0.487 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
-.++.+|.+|..++++++|+++|.+||+++|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788999999999999999999999999974
No 4
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.85 E-value=2.9e-05 Score=44.04 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
|-+++++|++|..++++++|+.+|++|+.++|.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 357899999999999999999999999999883
No 5
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.45 E-value=0.00052 Score=41.77 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
.+..|++|..+|++++|..+|..+|+.+|.+-+|...|.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 456699999999999999999999999999999988775
No 6
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.44 E-value=0.00037 Score=44.54 Aligned_cols=47 Identities=26% Similarity=0.225 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML 83 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL 83 (140)
|-..+.+|.+|..++++++|..+|.+|+++||.+.+++-.+=.-++-
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999998877544433
No 7
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.14 E-value=0.00091 Score=34.02 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
..++.+|.+|..+++++.|..+|.++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35678899999999999999999999999875
No 8
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.98 E-value=0.0015 Score=38.42 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
++.| |.+|..++++++|.++|++||.+
T Consensus 2 l~~L-g~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNL-GRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHH-HHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555 99999999999999999997754
No 9
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.69 E-value=0.0032 Score=40.13 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 032443 36 SSAICFLRGKAYEALG-NCAQARLWYKAAIIADP 68 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~-N~~~A~~~YkeAL~~Dv 68 (140)
.+...+-||.||..++ +..+|..+|..||++||
T Consensus 36 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 36 NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888899999999 79999999999999998
No 10
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.32 E-value=0.008 Score=38.04 Aligned_cols=37 Identities=24% Similarity=0.143 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 42 LRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 42 LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
-+|++|...++++.|..+|.++|+.+|.+.++.-.|-
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg 38 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLG 38 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4566777777777777777777777777777665554
No 11
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.60 E-value=0.033 Score=35.18 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
.+-.-+..|.|+..+++.+.|..+|.+++..+|..
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45566778999999999999999999999999964
No 12
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.30 E-value=0.041 Score=43.99 Aligned_cols=60 Identities=23% Similarity=0.201 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHH--HHHHHHhcC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE--QETSLLSSL 95 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~--EE~eLl~sL 95 (140)
.+...+.+|.+|...|+.++|..+|++||+.+|..-++...|+---+=+.. +-.++|..+
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 445677899999999999999999999999999999999988765442222 224555443
No 13
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.07 E-value=0.064 Score=44.22 Aligned_cols=44 Identities=27% Similarity=0.307 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
.+...+.||.+|..+++++.|...|..|+.++|...+|+..|-.
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 106 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGI 106 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35567888888888888888888888888888888887766543
No 14
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.05 E-value=0.033 Score=53.43 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
+.++.||+||++++..+++..|+++|..||.+||.-..+.-+|-+-
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAEL 727 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 5678899999999999999999999999999999999998877543
No 15
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.03 E-value=0.057 Score=34.49 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF 74 (140)
.....+.+|.+|..++++..|.++|..+|..+|..-++-
T Consensus 28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 28 DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 456678899999999999999999999999999776653
No 16
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.49 E-value=0.13 Score=30.78 Aligned_cols=40 Identities=28% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
.++.+|.+|..+++.+.|..+|..++...+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 3455566676677777777777777766666665544444
No 17
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.26 E-value=0.19 Score=30.05 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
.++.+|.+|..++++++|..+|.++++.+|....++-.+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 42 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAA 42 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 36778999999999999999999999999988766655444
No 18
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.16 E-value=0.089 Score=36.93 Aligned_cols=45 Identities=16% Similarity=-0.030 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
.+.+.+|.+|..+++++.|..+|..++..+|...+.+-.+-.-++
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555777877888888888888888888877777655443333
No 19
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.02 E-value=0.14 Score=43.72 Aligned_cols=71 Identities=20% Similarity=0.092 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC--CHHHHHHHH-hcCCCCchh----HHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML--TCEQETSLL-SSLEFGFED----GWLSSF 107 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL--t~~EE~eLl-~sL~f~~e~----~~lk~l 107 (140)
+...+.||.+|..+++++.|..+|..||.+||.+.+|+-.|-.-++. -.++-...+ ..|.+.+.+ .|+...
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678899999999999999999999999999999999887433322 223333333 456665432 455544
No 20
>PRK11189 lipoprotein NlpI; Provisional
Probab=93.98 E-value=0.16 Score=41.88 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHccCC
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADP-LCYEALECLIENHML 83 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv-~CyEAFe~Lv~~~lL 83 (140)
..++.+|++|..+|+.+.|..+|+.|+..+| ...|+--++++-..+
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 3567779999999999999999999999997 556666666654433
No 21
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.95 E-value=0.17 Score=28.76 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
+++..| |.+|..++++..|..+|.+|+.+
T Consensus 3 ~~~~~l-a~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNL-ANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHH-HHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHhhhhcchhhHHHHHHHHH
Confidence 445555 99999999999999999999875
No 22
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=93.94 E-value=0.13 Score=38.17 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
.+-+|.++..+++++.|..+|..|+.+||.+.+++..|-.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 66 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAG 66 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3346778888888888888888888888888877766554
No 23
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.90 E-value=0.1 Score=45.29 Aligned_cols=30 Identities=40% Similarity=0.381 Sum_probs=19.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPLCYEA 73 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEA 73 (140)
|++|.++|++..|.+.||.||.+||.+-..
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHH
Confidence 666666666666666666666666666543
No 24
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.71 E-value=0.15 Score=33.11 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
+..+...|.+|..++++++|..+|.+||.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667799999999999999999999976
No 25
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=93.50 E-value=0.22 Score=37.04 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
...+.+|.++.++++.+.|..+|..|+.+||...+++..|-.
T Consensus 59 ~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 59 RAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 345667999999999999999999999999999999987765
No 26
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.48 E-value=0.24 Score=38.97 Aligned_cols=61 Identities=18% Similarity=0.103 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc------cCCCHHHHHHHHhcCCCCc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN------HMLTCEQETSLLSSLEFGF 99 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~------~lLt~~EE~eLl~sL~f~~ 99 (140)
..+..|++|..+|+++.|..+|..|++++|...+++-.+-.- +.++.+-..-|-..|...+
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 467779999999999999999999999999999998775442 2234444444445666655
No 27
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=93.32 E-value=0.12 Score=37.88 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 032443 35 ISSAICFLRGKAYEALGNCAQARLWYKAAI 64 (140)
Q Consensus 35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL 64 (140)
..+....++|-||.++|+++.|+..|+.||
T Consensus 116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 467788899999999999999999999986
No 28
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.16 E-value=0.16 Score=27.71 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
|-.|+||..+++.++|+..|.+.+..-|.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 44599999999999999999999987764
No 29
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.56 E-value=0.39 Score=31.39 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE 75 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe 75 (140)
++|| +..|-.+++.++|+.+-..+|+++|.|-.|-+
T Consensus 4 lY~l-Aig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYL-AIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHH-HHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHH-HHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4455 99999999999999999999999999988754
No 30
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=92.55 E-value=0.42 Score=35.93 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
+..++..|.+|..+++.+.|..+|.+|+..+|....++..+
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 34566667777777777777777777777777776666544
No 31
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=92.11 E-value=0.39 Score=33.64 Aligned_cols=46 Identities=11% Similarity=0.011 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML 83 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL 83 (140)
..-+.+|.+|...++...|.++|..++..+|...++...+-...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 63 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM 63 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3356779999999999999999999999999988888777665544
No 32
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=91.91 E-value=0.44 Score=40.75 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
...+.+|.+|..+++++.|..+|.+|+++||..-++...+
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3477889999999999999999999999999988876554
No 33
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.76 E-value=0.07 Score=48.03 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLL 92 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl 92 (140)
+-+=..+|||+|++.+.|.+.||.+|+.++.+.||.-+.-.+|.-+..-|..|.
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence 333347899999999999999999999999999999999888888887776654
No 34
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.36 E-value=0.36 Score=31.29 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
+...+-.|.||..+++.++|.++|.+|+.+
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455556699999999999999999999976
No 35
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.10 E-value=0.32 Score=46.90 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=29.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
-|-+|-.+||.+.|..||++||+++|..-+|+.-+
T Consensus 394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~Nm 428 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNM 428 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhc
Confidence 38889999999999999999999999888877543
No 36
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.09 E-value=0.54 Score=42.22 Aligned_cols=41 Identities=27% Similarity=0.158 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
+...+.+|.+|..+++++.|..+|.+||.++|.+.+++-.|
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 34567778888888888888888888888888887776554
No 37
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=90.94 E-value=0.57 Score=42.12 Aligned_cols=44 Identities=23% Similarity=0.096 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
...+-+|.||..++++++|.++|..||.+||.+.+|+..+-.-+
T Consensus 161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 161 VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34566899999999999999999999999999998887764433
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.85 E-value=1.1 Score=32.33 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
+.+|.+|..++++++|...|.+|+..+|....++..+
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3445566666666666666666666655554444333
No 39
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=90.81 E-value=0.64 Score=42.30 Aligned_cols=50 Identities=12% Similarity=0.007 Sum_probs=41.6
Q ss_pred CCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 30 DGEINISSAICFLRGKAYEALGN---CAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 30 d~gikl~ssmc~LRGk~yeal~N---~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
...-+..|--|||||+-|....+ ..+|..+|.+|+.+||..-.|+-.|.-
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~ 384 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKAL 384 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34456789999999999977655 779999999999999999888887543
No 40
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=90.49 E-value=0.58 Score=29.31 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
+.+..|+||..+|++++|...+..++..+|..
T Consensus 27 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 27 ARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 44456788888888888888888888888875
No 41
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=90.48 E-value=0.94 Score=30.28 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
+...+.+|++|...++.+.|...|+.++..+|..
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 4467788999999999999999999999988764
No 42
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=0.57 Score=42.14 Aligned_cols=39 Identities=33% Similarity=0.373 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
|=||+|+.+++.++.|+.-|+.|++++|.+-+|=.+|+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 568999999999999999999999999999999877763
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.19 E-value=1.2 Score=31.99 Aligned_cols=42 Identities=24% Similarity=0.127 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
..+..|.+|..+++.+.|..+|.+++..+|.+.+++..|..-
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 345569999999999999999999999999988887766443
No 44
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=90.01 E-value=0.87 Score=39.67 Aligned_cols=47 Identities=30% Similarity=0.344 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
.+.+.+++|.+|..++++++|..+|..|+..+|.+.+++-.|..-.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 170 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL 170 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 45678889999999999999999999999999999888877765443
No 45
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=89.65 E-value=0.49 Score=37.42 Aligned_cols=41 Identities=17% Similarity=-0.003 Sum_probs=35.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC
Q 032443 43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML 83 (140)
Q Consensus 43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL 83 (140)
-|-|+-+++++..|.++|..|+.+||.++++...+=.-+|.
T Consensus 75 LG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 75 LGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 49999999999999999999999999999998776555444
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=89.41 E-value=0.91 Score=40.74 Aligned_cols=50 Identities=22% Similarity=0.166 Sum_probs=40.5
Q ss_pred CCchhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 30 DGEINISSAICFLRGKAYEALG---NCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 30 d~gikl~ssmc~LRGk~yeal~---N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
...-+++|..+||||+.+.... +..+|..+|.+|+.+||.+..|+..|-.
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~ 303 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAE 303 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3446689999999999775543 4679999999999999999998866543
No 47
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=89.17 E-value=0.81 Score=30.35 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAA 63 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeA 63 (140)
....++.|+||..+++.+.|...|.+|
T Consensus 58 ~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 58 PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 345556699999999999999988875
No 48
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=88.96 E-value=0.55 Score=46.41 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHccCCCHHHHH------HHHhcCCCCch-hHHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCY-EALECLIENHMLTCEQET------SLLSSLEFGFE-DGWLSSF 107 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy-EAFe~Lv~~~lLt~~EE~------eLl~sL~f~~e-~~~lk~l 107 (140)
.|=-||..||+|=++||+++|+..|.+|++.|+.+| =++--|.+-+|.-.+=|. .++..+|=..+ ..++-.|
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 344499999999999999999999999999999883 234444433333322221 23344444433 3566777
Q ss_pred HHHh
Q 032443 108 YSCL 111 (140)
Q Consensus 108 Y~sr 111 (140)
|..+
T Consensus 386 ya~~ 389 (1018)
T KOG2002|consen 386 YAHS 389 (1018)
T ss_pred HHhh
Confidence 7665
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.83 E-value=3 Score=38.94 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHh-cCCCCchhHHHHHHHHHhhh
Q 032443 35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLS-SLEFGFEDGWLSSFYSCLIK 113 (140)
Q Consensus 35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~-sL~f~~e~~~lk~lY~srL~ 113 (140)
..+-+-||+|.++-.+++.++|..+|++++..=|...+|+..|- .++|+.|-..++. +|+- +..|++.++..+.-
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~--~lit~~e~~~~l~~~l~~--~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELS--ELITDIEILSILVVGLPS--DMHWMKKFFLKKAY 237 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHH--HhhchHHHHHHHHhcCcc--cchHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999996 5788888776664 5652 24566666554443
No 50
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=88.67 E-value=0.73 Score=45.18 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
+-.|.||..+++.++|...|.++|++||.+.+|++.+-
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~A 157 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLA 157 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 44599999999999999999999999999999886653
No 51
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=88.67 E-value=1.6 Score=32.46 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
.+...+..|.++..+++++.|..+|+.|+.+.+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 67 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID 67 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc
Confidence 4444445566666666666666666666665443
No 52
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=88.65 E-value=0.61 Score=42.44 Aligned_cols=32 Identities=31% Similarity=0.260 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCY 71 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy 71 (140)
+.++|++|+..|+.+.|.++|.+|+++||..-
T Consensus 456 ~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 456 YVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 66779999999999999999999999999853
No 53
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.21 E-value=0.6 Score=43.76 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=33.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
-|.+|-..+.|+||+.||..||.++|..|==+++|=
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLG 471 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLG 471 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhh
Confidence 399999999999999999999999999998888874
No 54
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=88.08 E-value=1.3 Score=36.34 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
..+-.|.+|.++...++.++|...|.+|+..||.+.+++..|..-.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 79 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLF 79 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 4556677899999999999999999999999999999887766543
No 55
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.97 E-value=0.83 Score=39.82 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC-CC-HHHHHH-HHhcCCCCchhH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM-LT-CEQETS-LLSSLEFGFEDG 102 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l-Lt-~~EE~e-Ll~sL~f~~e~~ 102 (140)
|-.+.-|.-+|..|+..+.|++-.+.||.+||+-..||-+|=--.+ +. .+|-.+ +=--|.+.|+.+
T Consensus 115 AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 115 AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 3456779999999999999999999999999999999998732221 11 111111 223478877655
No 56
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.90 E-value=0.43 Score=27.91 Aligned_cols=21 Identities=38% Similarity=0.384 Sum_probs=18.5
Q ss_pred HHHHHHhcCCCcHHHHHHHHH
Q 032443 59 WYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 59 ~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
||+.||.+||.+.+|+..|=.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~ 21 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLAN 21 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHH
Confidence 699999999999999987743
No 57
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.83 E-value=0.8 Score=42.94 Aligned_cols=41 Identities=24% Similarity=0.105 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
|+| |.++.-.+|=.+|+...++||.+||++-||+..|-=.|
T Consensus 323 ~~L-G~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 323 QKL-GITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred HHh-hhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 556 99999999999999999999999999999999886443
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=87.75 E-value=1.4 Score=39.56 Aligned_cols=40 Identities=15% Similarity=0.024 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
...+|.++..+++++.|..+|.+||+++|.+.++...|-.
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 380 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW 380 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3445777777777777777777777777777777665543
No 59
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=87.47 E-value=0.75 Score=46.03 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSS 94 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~s 94 (140)
.-+-|+| |.+|.-..+..||+.||..|..+|+.-+||-..+++..- ..++|+...+
T Consensus 492 apaf~~L-G~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtya--e~~~we~a~~ 547 (1238)
T KOG1127|consen 492 APAFAFL-GQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYA--EESTWEEAFE 547 (1238)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh--ccccHHHHHH
Confidence 3455888 999999999999999999999999999999999998664 3344554443
No 60
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=0.3 Score=44.73 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF 74 (140)
-+|||+|+--.+|-++|...|.+||++||.|+++=
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk 240 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK 240 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhhhhHH
Confidence 58999999999999999999999999999999874
No 61
>PLN02789 farnesyltranstransferase
Probab=87.25 E-value=2.5 Score=36.12 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHH--HHccCCC--HHHHHHHH-hcCCCC
Q 032443 38 AICFLRGKAYEALG-NCAQARLWYKAAIIADPLCYEALECL--IENHMLT--CEQETSLL-SSLEFG 98 (140)
Q Consensus 38 smc~LRGk~yeal~-N~~~A~~~YkeAL~~Dv~CyEAFe~L--v~~~lLt--~~EE~eLl-~sL~f~ 98 (140)
....-||.+..+++ +...|..++.+++..+|++|.++... +-..|=. .++|.+++ ..|..+
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d 138 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD 138 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC
Confidence 34566788888887 46788888888888888888887622 2222211 14566666 344444
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.07 E-value=0.74 Score=39.16 Aligned_cols=41 Identities=29% Similarity=0.222 Sum_probs=37.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT 84 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt 84 (140)
|.|...+|.+++|++.|+.||.+||..-.++..|...|+.-
T Consensus 146 G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 146 GLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA 186 (250)
T ss_pred HHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence 78888999999999999999999999999999999888753
No 63
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=87.03 E-value=2 Score=42.20 Aligned_cols=85 Identities=12% Similarity=-0.117 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHH---HHHhcCCCCchhHHHHHHHHH
Q 032443 34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQET---SLLSSLEFGFEDGWLSSFYSC 110 (140)
Q Consensus 34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~---eLl~sL~f~~e~~~lk~lY~s 110 (140)
.+.+--.|++|+.+..-||.+.|...|+.||.+||..-++.-.|.+-+|-....+. .+-..+..+|++.|...+. .
T Consensus 41 ~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a 119 (987)
T PRK09782 41 HFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-A 119 (987)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-H
Confidence 36788899999999999999999999999999999999999999887776544332 2335777888887777764 6
Q ss_pred hhhccCCCc
Q 032443 111 LIKKCRRYP 119 (140)
Q Consensus 111 rL~Ky~~~~ 119 (140)
.+++|.+..
T Consensus 120 ~i~~~~kA~ 128 (987)
T PRK09782 120 AIPVEVKSV 128 (987)
T ss_pred HhccChhHH
Confidence 666666543
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=86.73 E-value=1.1 Score=43.49 Aligned_cols=35 Identities=29% Similarity=0.185 Sum_probs=32.6
Q ss_pred HHHHHHcCCHHHHHH--HHHHHHhcCCCcHHHHHHHH
Q 032443 44 GKAYEALGNCAQARL--WYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 44 Gk~yeal~N~~~A~~--~YkeAL~~Dv~CyEAFe~Lv 78 (140)
|+++...|+...|.. ..++||++||.|.||+..|=
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 889999999999999 99999999999999998875
No 65
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.20 E-value=0.9 Score=43.69 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
-.|..|++|.+|-|.+.|.+.|++|++.|++|-|-=+.|.
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 3677899999999999999999999999999988766554
No 66
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=86.16 E-value=2.4 Score=31.76 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCY 71 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy 71 (140)
.+-..+.+|.+|..+++++.|..+|++|+.+++...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 69 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN 69 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc
Confidence 455678889999999999999999999999887654
No 67
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=86.03 E-value=2.2 Score=37.19 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
..++..|.+|..+++.++|..+|.+|+..+|....+...|..
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 507 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 456778999999999999999999999999998887766554
No 68
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=85.82 E-value=2.4 Score=28.24 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALEC 76 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~ 76 (140)
.-+..|.+|..+++.+.|..+|.+++...|..-.+-++
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 35677999999999999999999999999987665544
No 69
>PLN02789 farnesyltranstransferase
Probab=85.56 E-value=1.3 Score=37.82 Aligned_cols=61 Identities=11% Similarity=0.009 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH--HccC--C-----CHHHHHHHH-hcCCCCchh
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI--ENHM--L-----TCEQETSLL-SSLEFGFED 101 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv--~~~l--L-----t~~EE~eLl-~sL~f~~e~ 101 (140)
.=||-++..+++.+.|.++|..+|+.||.++.|+.... -.+| | ..++|.+++ +.+...|++
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N 216 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN 216 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC
Confidence 44899999999999999999999999999999987652 2222 1 124677776 667666644
No 70
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.44 E-value=1.9 Score=37.21 Aligned_cols=60 Identities=30% Similarity=0.289 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH------ccCCCHHHHHHHHhcCCCCc
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE------NHMLTCEQETSLLSSLEFGF 99 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~------~~lLt~~EE~eLl~sL~f~~ 99 (140)
-.+-|++|..+|+++-|...|..|+++++.+-|.+-.+-+ .+-+|++-+.-|=+-|.-++
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 3455999999999999999999999999999998866643 45566655555545555544
No 71
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=85.29 E-value=3.5 Score=40.36 Aligned_cols=57 Identities=23% Similarity=0.213 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC-CCHHHHHHHHhcCC
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM-LTCEQETSLLSSLE 96 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l-Lt~~EE~eLl~sL~ 96 (140)
.+..|.+|.++++++.|..+|.+||+++|.+.+|...|..-+. ..+++-..+++.|+
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 3455999999999999999999999999999999877755332 24555555665554
No 72
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=85.28 E-value=1 Score=44.60 Aligned_cols=41 Identities=32% Similarity=0.424 Sum_probs=35.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT 84 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt 84 (140)
|-||..|++.+.|+-.|..||.+||+|..|.-.|-.--+..
T Consensus 206 g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~ 246 (1018)
T KOG2002|consen 206 GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF 246 (1018)
T ss_pred hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc
Confidence 77888999999999999999999999999999886544433
No 73
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=84.98 E-value=2 Score=27.19 Aligned_cols=34 Identities=18% Similarity=-0.013 Sum_probs=30.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
..+|...++++.|..++..++.++|....++..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 35 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQR 35 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHH
Confidence 4688999999999999999999999988887544
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=84.79 E-value=2.1 Score=26.69 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=37.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCH--HHHHHHHhcCC
Q 032443 48 EALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTC--EQETSLLSSLE 96 (140)
Q Consensus 48 eal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~--~EE~eLl~sL~ 96 (140)
...++++.|...|+.++..+|.+-++.-.|..-.+-+. ++=..++.++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35789999999999999999999999888776655443 33444555443
No 75
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=83.67 E-value=2.9 Score=38.30 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEA 73 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEA 73 (140)
.++=+|.+|..+++++.|..+|..||.++|...||
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA 111 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA 111 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Confidence 34445888888888888888888888888876654
No 76
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.55 E-value=1.9 Score=40.18 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
|+=+|.|+.++-++++|.++|.+||..||.|-|+-+.+..-.+
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 4456999999999999999999999999999998877665443
No 77
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=83.27 E-value=3.7 Score=33.56 Aligned_cols=45 Identities=18% Similarity=0.092 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
.+.+..|.+|..++++++|..+|.+++..++....++..|..-..
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 455666999999999999999999999999998888887765443
No 78
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.06 E-value=1.2 Score=42.18 Aligned_cols=75 Identities=21% Similarity=0.170 Sum_probs=50.3
Q ss_pred chhccCCCCCCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH--HHHHHccCCCHHHHHHHHhcCC
Q 032443 20 NVMYLDKDGEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL--ECLIENHMLTCEQETSLLSSLE 96 (140)
Q Consensus 20 ~~~~~~~~~~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF--e~Lv~~~lLt~~EE~eLl~sL~ 96 (140)
+...+.+.-+-...+ ..-||++ |+++.+++..++|.+.|.+|+.+||+.-=.- ...|-..|=.-+|+...|+.|.
T Consensus 508 Ae~~fqkA~~INP~n-svi~~~~-g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 508 AEFHFQKAVEINPSN-SVILCHI-GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred HHHHHHhhhcCCccc-hhHHhhh-hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 333444443334443 4568999 9999999999999999999999999974321 1233334445566666666554
No 79
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=82.85 E-value=5.7 Score=37.00 Aligned_cols=76 Identities=24% Similarity=0.207 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHh----cCCCCchhHHHHHHHHHhh
Q 032443 39 ICFLRGKAYEALG--NCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLS----SLEFGFEDGWLSSFYSCLI 112 (140)
Q Consensus 39 mc~LRGk~yeal~--N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~----sL~f~~e~~~lk~lY~srL 112 (140)
.--+|+++.+..| +.+.=..||.+++++||.|--..+.|+..|-. .....+|++ +|+..+.......+=+..+
T Consensus 344 pi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~-~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l 422 (547)
T PF14929_consen 344 PIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK-DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFL 422 (547)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh-HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence 3568889999988 89999999999999999999999999999988 777777776 5555555555555555555
Q ss_pred hcc
Q 032443 113 KKC 115 (140)
Q Consensus 113 ~Ky 115 (140)
+..
T Consensus 423 ~~~ 425 (547)
T PF14929_consen 423 KNP 425 (547)
T ss_pred hcc
Confidence 533
No 80
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.48 E-value=3.7 Score=26.98 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
|.-+.-+|.-++..|+...|.++|++|+.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566789999999999999999999985
No 81
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.44 E-value=2.9 Score=39.01 Aligned_cols=43 Identities=28% Similarity=0.253 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
-|----|.||+++++...|+.|||.|+...=...-|+-.|-+-
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 3444459999999999999999999999877777776666543
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=82.40 E-value=1.8 Score=36.32 Aligned_cols=71 Identities=17% Similarity=0.077 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC-HH--HHHHHHhcCC-CCchhHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT-CE--QETSLLSSLE-FGFEDGWLSSFY 108 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt-~~--EE~eLl~sL~-f~~e~~~lk~lY 108 (140)
.+....+.|+..+++++.|.....+||..||++.+++--||--..++ .. +-.++++.|. ..|+-.|++.+-
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 44556678999999999999999999999999999988877654433 22 3556787776 445556666653
No 83
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.26 E-value=2.6 Score=35.00 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=34.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 032443 29 EDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADP 68 (140)
Q Consensus 29 ~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv 68 (140)
++.+-...|-..-|||-++.+.|++..|+..|..||..++
T Consensus 151 t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 151 TIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred ccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 3445556777899999999999999999999999999873
No 84
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=82.22 E-value=2 Score=42.14 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
+.+.+..|+||-.++..+.|++||..+|..+|.|.+|--.|-+-+
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~ 493 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY 493 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH
Confidence 556788999999999999999999999999999999987775533
No 85
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.97 E-value=2.1 Score=36.96 Aligned_cols=44 Identities=30% Similarity=0.361 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
...|+|.|=||..|..+|=+..|+.-|.+||.+-|+--++|+-|
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyL 105 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 105 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHH
Confidence 35899999999999999999999999999999999998888876
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.86 E-value=6.1 Score=33.70 Aligned_cols=47 Identities=23% Similarity=0.179 Sum_probs=37.2
Q ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 31 ~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
-++...+-.-.=+|.-|...+|..+|+....+||++||..|.|.-.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~ 75 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVR 75 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 44555555556668888899999999999999999999999886544
No 87
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=81.85 E-value=2.3 Score=33.61 Aligned_cols=29 Identities=24% Similarity=0.073 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
.+.+++ |.||.+++|++.|+.+|+.|+..
T Consensus 104 ~~~~~a-g~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 104 QAPWAA-AECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred hHHHHH-HHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666 99999999999999999999986
No 88
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=81.42 E-value=6.6 Score=28.29 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=35.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHH
Q 032443 43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86 (140)
Q Consensus 43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~ 86 (140)
.+.++...++.+.|..++..++.+||+.-++...|+.-+.-+..
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~ 111 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR 111 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC
Confidence 46678899999999999999999999999999999977665543
No 89
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=81.05 E-value=8.3 Score=28.59 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
..+-.|.+|..+++.+.|..+|..||.++|...+++..|-.-
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 445559999999999999999999999999999887666433
No 90
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.75 E-value=2.2 Score=41.49 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
-||.-| |-||--++.++.|...|+.||.+-|.|-+|++-|-
T Consensus 355 dam~NL-gni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa 395 (966)
T KOG4626|consen 355 DAMNNL-GNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLA 395 (966)
T ss_pred HHHHHH-HHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHH
Confidence 356666 88999999999999999999999999999998774
No 91
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=80.40 E-value=4.1 Score=39.91 Aligned_cols=42 Identities=26% Similarity=0.211 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
..+..|.+|..+++.+.|..+|++|+..+|.+.+|...|..-
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~ 646 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEV 646 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456679999999999999999999999999999998877653
No 92
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=80.30 E-value=2.2 Score=38.30 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=37.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443 29 EDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE 75 (140)
Q Consensus 29 ~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe 75 (140)
.+.++.|.=--|=| ...+.+-+|.++|+++.+.||..||+|.-|=-
T Consensus 173 q~~~~eIAqfyCEL-Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi 218 (389)
T COG2956 173 QTYRVEIAQFYCEL-AQQALASSDVDRARELLKKALQADKKCVRASI 218 (389)
T ss_pred ccchhHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHhhCccceehhh
Confidence 44566655555555 89999999999999999999999999987643
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=79.76 E-value=9.3 Score=35.11 Aligned_cols=46 Identities=24% Similarity=0.212 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
..++.-.||+++..||+++.|...|++-|...|.|+.=+..|...-
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999998888765
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=79.55 E-value=3.5 Score=31.67 Aligned_cols=34 Identities=21% Similarity=0.029 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE 72 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE 72 (140)
..+..|.+|.++++++.|...|.++++.+|...+
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 3566799999999999999999999999987666
No 95
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.96 E-value=0.82 Score=43.06 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=25.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPLCYEAL 74 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF 74 (140)
|-+--+-++.++|.++||+||..|.-|-||+
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~eal 527 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEAL 527 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHH
Confidence 3344456789999999999999999999885
No 96
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=77.94 E-value=2.9 Score=39.81 Aligned_cols=37 Identities=35% Similarity=0.430 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE 72 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE 72 (140)
+|++.+|-||+|-.+++.+.|+--|-=|+.+||+=-.
T Consensus 590 es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 590 ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 8999999999999999999999999999999998543
No 97
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.85 E-value=3.9 Score=34.90 Aligned_cols=36 Identities=33% Similarity=0.400 Sum_probs=26.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
|+.+|+.++.++.|.+-||..|..||...||=++.+
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 377777777777777777777777777777755544
No 98
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.53 E-value=2.1 Score=34.97 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
-++..+|...--++-+.+++|++||..|+..||.+----..|
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345556666667778889999999999999999975444333
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=77.35 E-value=4.6 Score=31.76 Aligned_cols=36 Identities=11% Similarity=-0.018 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEA 73 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEA 73 (140)
...++.|.++..+++++.|..+|..+|..+|---+-
T Consensus 145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 145 TALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 345667999999999999999999999999875543
No 100
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=77.26 E-value=5.3 Score=31.85 Aligned_cols=40 Identities=20% Similarity=0.103 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
.--|.+|..+++.++|..+|.++++.+|........+.+-
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred HHHHHHhccccccccccccccccccccccccccccccccc
Confidence 3449999999999999999999999999999988877643
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=76.43 E-value=2.2 Score=41.24 Aligned_cols=59 Identities=19% Similarity=0.078 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHH--HHHHH-hcCCCC
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQ--ETSLL-SSLEFG 98 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~E--E~eLl-~sL~f~ 98 (140)
.|=+|-|+.++++.+.|+.+|-.++..||..+|||+-|-..+|---.- -|..+ ..|.++
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 566799999999999999999999999999999999988777644333 33333 245544
No 102
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=76.42 E-value=7.8 Score=34.49 Aligned_cols=63 Identities=21% Similarity=0.072 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHH--hcCCCCc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLL--SSLEFGF 99 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl--~sL~f~~ 99 (140)
+.+-.+.++.+...+..+.|..+.++|..+-|..|+++..|.+-++...+-|+.|+ +|+|+.+
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 55566778999999999999999999999999999999999999999999999987 5888764
No 103
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=76.00 E-value=6.3 Score=36.12 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCY 71 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy 71 (140)
..+|-+|-||..+++.+.|.+||.+||.+....|
T Consensus 113 ~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 113 AAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 4578889999999999999999999999843334
No 104
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=75.16 E-value=5.8 Score=24.30 Aligned_cols=28 Identities=25% Similarity=0.052 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIAD 67 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~D 67 (140)
+.+-|-+-.-.+|+++|.+=|+.||.+=
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4455999999999999999999999863
No 105
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=74.57 E-value=8.7 Score=35.53 Aligned_cols=42 Identities=10% Similarity=-0.081 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
.++.|.+|..+++.+.|...|.+|+.++|...+++..|..-.
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l 154 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTL 154 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 466688999999999999999999999999888887776543
No 106
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=74.22 E-value=2.9 Score=23.11 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
+.||+.|+ ---.|..+|..||+.|-..
T Consensus 8 g~~~~~G~--g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 8 GQMYEYGL--GVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHcCC--CCCcCHHHHHHHHHHHHHc
Confidence 34445444 2245999999999998654
No 107
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=74.20 E-value=4.9 Score=38.07 Aligned_cols=52 Identities=23% Similarity=0.202 Sum_probs=35.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhcCCC
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEF 97 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f 97 (140)
|-||..+||+++|++.|-+||.++|.|-=+=+.|= .++-..++..-+.+-++
T Consensus 496 g~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~--~aie~~~~~~~~~~~~~ 547 (611)
T KOG1173|consen 496 GYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK--LAIEDSECKSGVDSKDY 547 (611)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH--HHHHhhhhhcccccccc
Confidence 77899999999999999999999999955544442 23333334444444333
No 108
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=73.93 E-value=8 Score=27.13 Aligned_cols=59 Identities=20% Similarity=0.147 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhcCCCCchhHHHHHHHHHhhhcc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKKC 115 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f~~e~~~lk~lY~srL~Ky 115 (140)
.|+-+..|..-+++.+++..|..||++|.. .|-+++ .++|++ -.+..|..+++.|
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe-------~L~q~~---~~~pD~---------------~~k~~yr~ki~eY 59 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIE-------VLSQIV---KNYPDS---------------PTRLIYEQMINEY 59 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------HHHHHH---HhCCCh---------------HHHHHHHHHHHHH
Confidence 466788899999999999999999998763 333333 233332 3377899999998
Q ss_pred CCCc
Q 032443 116 RRYP 119 (140)
Q Consensus 116 ~~~~ 119 (140)
.+..
T Consensus 60 ~~Ra 63 (75)
T cd02682 60 KRRI 63 (75)
T ss_pred HHHH
Confidence 7653
No 109
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=72.56 E-value=15 Score=36.39 Aligned_cols=57 Identities=28% Similarity=0.290 Sum_probs=42.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH---HHHHccCCCHHHHHHHHhcCCCCc
Q 032443 43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALE---CLIENHMLTCEQETSLLSSLEFGF 99 (140)
Q Consensus 43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe---~Lv~~~lLt~~EE~eLl~sL~f~~ 99 (140)
-+.-.+.+||.++|..||.+|++.+|.+++-.- .|.+++=..+....-+++-|++.|
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 356677889999999999999999999976543 355555555666666777777766
No 110
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=72.45 E-value=14 Score=27.41 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH-----ccCCCHHHHHHHHhcCC--CCc--hhHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE-----NHMLTCEQETSLLSSLE--FGF--EDGWLSSFYS 109 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~-----~~lLt~~EE~eLl~sL~--f~~--e~~~lk~lY~ 109 (140)
+-|=++-+|..+|+.++|+..|..||.....--...+.+|. .++=-++|=..+++..- |+. -...++.+|-
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34667999999999999999999999987776666666654 23445566666665432 321 1345565555
Q ss_pred Hhhh
Q 032443 110 CLIK 113 (140)
Q Consensus 110 srL~ 113 (140)
--|.
T Consensus 83 l~L~ 86 (120)
T PF12688_consen 83 LALY 86 (120)
T ss_pred HHHH
Confidence 4333
No 111
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=71.83 E-value=2.3 Score=38.37 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=38.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH---------HHHHccCC-CHHHHHHHHhcCCCC
Q 032443 43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALE---------CLIENHML-TCEQETSLLSSLEFG 98 (140)
Q Consensus 43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe---------~Lv~~~lL-t~~EE~eLl~sL~f~ 98 (140)
-|..-|.-++.-.|-+||..||.++|.+.||+- +=|+..|| |.+..++=+.+++=+
T Consensus 156 ~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~s 221 (472)
T KOG3824|consen 156 MGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHS 221 (472)
T ss_pred HhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 377778888888889999999999999998862 12233333 345555666666655
No 112
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=71.62 E-value=5.4 Score=26.30 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF 74 (140)
.++..+..|+||-.+++..+|..+++. +..++.+.+..
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~ 61 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIH 61 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHH
Confidence 445556579999999999999999999 88888775544
No 113
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=71.03 E-value=11 Score=31.45 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhcCCCCchhHHHHHHHHHhhhccCCC
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKKCRRY 118 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f~~e~~~lk~lY~srL~Ky~~~ 118 (140)
..|..|.+|...++++.|...|+.++...|..-.+.++|..-... ...+ . +..=-+..|..-+++|-++
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~--------~~~~--g-~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVI--------MQDK--G-DTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHH--------HHHc--C-CHHHHHHHHHHHHHHCcCC
Confidence 345669999999999999999999998888766555555432111 0011 1 2233344666667777665
Q ss_pred cc
Q 032443 119 PF 120 (140)
Q Consensus 119 ~~ 120 (140)
..
T Consensus 251 ~~ 252 (263)
T PRK10803 251 DG 252 (263)
T ss_pred HH
Confidence 43
No 114
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.37 E-value=11 Score=30.52 Aligned_cols=34 Identities=24% Similarity=0.536 Sum_probs=29.1
Q ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 31 ~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
.|.+ +..+.||-|..+-.+||++.|+.||...+.
T Consensus 160 ~~~~-~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 160 EGMD-EATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred CCch-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 3555 677889999999999999999999988764
No 115
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=68.76 E-value=6.8 Score=29.86 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHHccCCCHHHHHHHHhcCCCCchh
Q 032443 67 DPLCYEALECLIENHMLTCEQETSLLSSLEFGFED 101 (140)
Q Consensus 67 Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f~~e~ 101 (140)
-+.-||.+.+|+.++-+|.+.-.+||++|+.+++.
T Consensus 68 ~~~pYE~LK~lTRg~~it~~~l~~fI~~L~ip~~~ 102 (115)
T PF08328_consen 68 IPNPYEKLKELTRGKKITKEDLREFIESLDIPEEA 102 (115)
T ss_dssp -SSHHHHHHHHHTTS---HHHHHHHHHTSSS-HHH
T ss_pred CCCHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHH
Confidence 36779999999999999999999999999998654
No 116
>PRK15331 chaperone protein SicA; Provisional
Probab=67.61 E-value=6.3 Score=31.51 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=20.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 032443 44 GKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~ 65 (140)
|.||.++++.+.|+.||..|+.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 7888899999999999999998
No 117
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=67.25 E-value=16 Score=24.32 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
.-+|.-.+..+|.+.|..+|+.|+.
T Consensus 10 ~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3478889999999999999999974
No 118
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=66.79 E-value=4.9 Score=31.59 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHH
Q 032443 56 ARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 56 A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
|..||..|..+.|....++++|=
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLA 23 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLA 23 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchh
Confidence 78999999999999999999984
No 119
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=66.14 E-value=15 Score=36.33 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
..+-.|.++..+++.+.|..+|..|+.+||...++...|
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nL 649 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAAL 649 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 445668888888888888888888888888888877655
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=65.88 E-value=3.9 Score=41.20 Aligned_cols=41 Identities=27% Similarity=0.177 Sum_probs=37.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC
Q 032443 43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML 83 (140)
Q Consensus 43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL 83 (140)
||..|..-.|...|+.+|.-||++||+-|+++..|-+-+.=
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~ 608 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE 608 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999998765543
No 121
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=65.19 E-value=11 Score=32.36 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
.|.+-+++++++|+.+.|.++|+++|.+
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3555577777777777777777777653
No 122
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.76 E-value=6.8 Score=36.94 Aligned_cols=41 Identities=24% Similarity=0.191 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
+.++|=||+++--|++++.|+.=|.+|..+||.+-=||-+|
T Consensus 394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 394 PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 56899999999999999999999999999999988887765
No 123
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=64.46 E-value=20 Score=28.97 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
...|.++..+|++++|...|++++.++|..-.+.-.|
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~l 154 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAV 154 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3558999999999999999999999999987776665
No 124
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=63.74 E-value=19 Score=23.86 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
..-+|.-++..++.+.|..+|+.|+.
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44488999999999999999999875
No 125
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=62.61 E-value=16 Score=34.12 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
++.-.-|.++.+.|-.+.|.+.|..||++||+.--+.+-|
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 4445569999999999999999999999999999887754
No 126
>PRK14574 hmsH outer membrane protein; Provisional
Probab=61.37 E-value=18 Score=35.14 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=33.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
-|++|..++++++|.+.|+++|+.||..-+++-.|..-
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~ 145 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMT 145 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 38899999999999999999999999999988776543
No 127
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=61.19 E-value=17 Score=33.42 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE 75 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe 75 (140)
.+|+.++.|..++++++|.++.-+|+..+|++.|-+-
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~ 232 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYM 232 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4566799999999999999999999999999999764
No 128
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=61.02 E-value=9.2 Score=35.31 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=16.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443 43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALE 75 (140)
Q Consensus 43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe 75 (140)
||-=.-..||...|-+||.+||.+||.+-+---
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 444444555555555555555555555444333
No 129
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=60.55 E-value=26 Score=28.15 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=41.8
Q ss_pred CchhHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 31 GEINISSAICFLRGKAYEAL------GNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 31 ~gikl~ssmc~LRGk~yeal------~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
...++.|-.++++|+-...+ ++.+.+...|++|+.+++.-+.++-.+-
T Consensus 246 ~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 246 ESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred hhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 34456788899999999999 9999999999999999999999887543
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.35 E-value=20 Score=31.42 Aligned_cols=63 Identities=21% Similarity=0.090 Sum_probs=48.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH-HccCCCHH---HHHHHHhcCCCCchhHHHHHH
Q 032443 45 KAYEALGNCAQARLWYKAAIIADPLCYEALECLI-ENHMLTCE---QETSLLSSLEFGFEDGWLSSF 107 (140)
Q Consensus 45 k~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv-~~~lLt~~---EE~eLl~sL~f~~e~~~lk~l 107 (140)
-|+..++|+..|-...++||..|++-.|.+--|| ..+|+.++ -++-+-+.-.+.++-.|++.+
T Consensus 215 v~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 215 VCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHL 281 (299)
T ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHH
Confidence 3677899999999999999999999999986554 55666665 566666666677766666654
No 131
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=59.94 E-value=6.8 Score=35.93 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
--||--|-.++-++.|..||..++.+||++
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~N 130 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHN 130 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCC
Confidence 468999999999999999999999999964
No 132
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.72 E-value=18 Score=34.21 Aligned_cols=54 Identities=11% Similarity=0.141 Sum_probs=48.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC
Q 032443 28 GEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML 83 (140)
Q Consensus 28 ~~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL 83 (140)
.+-.+..+++++.|++|.-.-.+|.+..||....+.|+.- +.|-|.+|+..+|+
T Consensus 436 ~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~~Lv 489 (629)
T KOG2300|consen 436 NSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTACSLV 489 (629)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHHHHH
Confidence 4457888999999999999999999999999999999877 99999999986653
No 133
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=58.55 E-value=27 Score=32.32 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=19.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPLCYEALEC 76 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~ 76 (140)
|.++..+++++.|..+|++|+..+|...++...
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 666666666666666666666666665554433
No 134
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=58.46 E-value=14 Score=30.25 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 032443 34 NISSAICFLRGKAYEAL-GNCAQARLWYKAAIIA 66 (140)
Q Consensus 34 kl~ssmc~LRGk~yeal-~N~~~A~~~YkeAL~~ 66 (140)
.-.|-.+.--|++|+.. ++.++|.++|.+|+.+
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445555669999999 9999999999999875
No 135
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=58.38 E-value=23 Score=33.22 Aligned_cols=38 Identities=11% Similarity=-0.087 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
+++|.++...++.+.|...+.+++..+|.+.+++..|.
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44455555555555555555555555555554444443
No 136
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.99 E-value=17 Score=34.14 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 42 LRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 42 LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
=.|-++..+|+++.|+..|++.|..||.+--...=|.+-+
T Consensus 75 r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 75 RKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 3588889999999999999999999999988888888877
No 137
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=57.50 E-value=25 Score=33.00 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
.+..|.++..+++...|..+|.+|+.++|...++...|..
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5566999999999999999999999999999888665543
No 138
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.31 E-value=9.7 Score=34.31 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH----------HHHH------HHHccCCCHHHHHHHHhcC
Q 032443 34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE----------ALEC------LIENHMLTCEQETSLLSSL 95 (140)
Q Consensus 34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE----------AFe~------Lv~~~lLt~~EE~eLl~sL 95 (140)
+|.++++.=|.-|...++|+-+|..=...||.+||+.-- +++. .++..+++-+|....++-.
T Consensus 116 dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~ 193 (390)
T KOG0551|consen 116 DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELR 193 (390)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 478999999999999999999999999999999986432 2232 3456788888888877644
No 139
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=57.29 E-value=25 Score=24.27 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
|.-..-++.-.+.-++++.|..||.+||.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44456678889999999999999999985
No 140
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.99 E-value=25 Score=24.25 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
+-.+.++..+|+.+.|...+++|+++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44699999999999999999999986
No 141
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=56.74 E-value=18 Score=19.55 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYK 61 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~Yk 61 (140)
..+..|.++..+|+.+.|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34667999999999999998764
No 142
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=56.10 E-value=16 Score=31.32 Aligned_cols=35 Identities=29% Similarity=0.253 Sum_probs=20.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 43 RGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 43 RGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
-||..-+.+|+..|..-+.+|+.++|+..|+...|
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45555555555555555555555555555555443
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=55.98 E-value=29 Score=34.48 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=50.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhcCCCCchhHHHHHHHHHhhhccCCCcchhhh
Q 032443 45 KAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCLIKKCRRYPFSGAI 124 (140)
Q Consensus 45 k~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f~~e~~~lk~lY~srL~Ky~~~~~~~~~ 124 (140)
.+|-.+++++.+.+.+|.+|..|++++=|+..|+. -|. +||...+-++++
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~---------------------------~y~---~kY~~~~~~ee~ 280 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIR---------------------------FYK---EKYKDHSLLEDY 280 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHH---------------------------HHH---HHccCcchHHHH
Confidence 78999999999999999999999999999998884 343 788888888888
Q ss_pred hccceeeec
Q 032443 125 VHNILLRQV 133 (140)
Q Consensus 125 ~~~~~~~~~ 133 (140)
+.=.+|||.
T Consensus 281 l~~s~l~~~ 289 (906)
T PRK14720 281 LKMSDIGNN 289 (906)
T ss_pred HHHhccccC
Confidence 877777765
No 144
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=55.68 E-value=33 Score=19.05 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHhc
Q 032443 52 NCAQARLWYKAAIIA 66 (140)
Q Consensus 52 N~~~A~~~YkeAL~~ 66 (140)
|..+|..||+.|-..
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 689999999998654
No 145
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=55.22 E-value=14 Score=32.86 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 37 SAICFLRGKAYEA---------LGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 37 ssmc~LRGk~yea---------l~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
+=++.|.|+||=- ...+++|.+||++|..+++.-|-.-+..+
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~At 267 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAAT 267 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 3466777999832 34689999999999999998776655543
No 146
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=55.05 E-value=49 Score=25.29 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCY 71 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy 71 (140)
.+..-|-+|..|...++++.|...|.+++...|...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~ 67 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP 67 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 345668889999999999999999999999999765
No 147
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=55.04 E-value=25 Score=24.74 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
.|--|-=+|..++-.|..+.|..+|+.|++
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 344566689999999999999999999886
No 148
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.81 E-value=38 Score=29.46 Aligned_cols=78 Identities=18% Similarity=0.086 Sum_probs=53.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC--HHHH-------HHHHhcCCCCchhHHHHHHHHHhh
Q 032443 42 LRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT--CEQE-------TSLLSSLEFGFEDGWLSSFYSCLI 112 (140)
Q Consensus 42 LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt--~~EE-------~eLl~sL~f~~e~~~lk~lY~srL 112 (140)
=|..||.++++++.+.+.-+.||.+||.-.-|---|=...|++ .+|- .+|...=+|+..+.+-+.|-.+|-
T Consensus 49 nralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~ 128 (284)
T KOG4642|consen 49 NRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKK 128 (284)
T ss_pred hHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence 4667888999999999999999999998765544443333333 2222 233334466677777777877777
Q ss_pred hccCCCc
Q 032443 113 KKCRRYP 119 (140)
Q Consensus 113 ~Ky~~~~ 119 (140)
++|...+
T Consensus 129 ~~w~v~e 135 (284)
T KOG4642|consen 129 KRWEVSE 135 (284)
T ss_pred CccchhH
Confidence 7776554
No 149
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=54.63 E-value=54 Score=26.46 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE 75 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe 75 (140)
...+++|.++-..++.++|...+.++|..+|....++.
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34678999999999999999999999999999998866
No 150
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=53.94 E-value=21 Score=30.56 Aligned_cols=50 Identities=24% Similarity=0.191 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~ 86 (140)
+....++|-||..+|+++.|..-|.+||++++.-=.+..-|-=..+|..+
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 45577889999999999999999999999999988887777666666544
No 151
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=53.47 E-value=9.1 Score=22.98 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=15.7
Q ss_pred HHHHHHccCCCHHHHHHHHhc
Q 032443 74 LECLIENHMLTCEQETSLLSS 94 (140)
Q Consensus 74 Fe~Lv~~~lLt~~EE~eLl~s 94 (140)
|..+-...|||++||.+|-..
T Consensus 8 l~ei~~~~LLt~eeE~~LA~~ 28 (37)
T PF00140_consen 8 LKEIGRYPLLTAEEEIELARR 28 (37)
T ss_dssp HHHHHHS-EETTHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHHH
Confidence 456667889999999998653
No 152
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=53.28 E-value=30 Score=24.02 Aligned_cols=43 Identities=23% Similarity=0.422 Sum_probs=36.3
Q ss_pred HHHHHHHHccC-CCHHHHHHHHhcCCCCchh-HHHHHHHHHhhhc
Q 032443 72 EALECLIENHM-LTCEQETSLLSSLEFGFED-GWLSSFYSCLIKK 114 (140)
Q Consensus 72 EAFe~Lv~~~l-Lt~~EE~eLl~sL~f~~e~-~~lk~lY~srL~K 114 (140)
.+.+.+..++. +|..+-..++....|+.+. ++++.+|..-..+
T Consensus 28 ~~l~~~~~~~~~~T~~Qv~~il~~f~fd~~kl~~lk~l~p~i~D~ 72 (95)
T PF14771_consen 28 KVLEAAAKTNNCFTCAQVKQILSLFSFDNDKLKALKLLYPYIVDP 72 (95)
T ss_pred HHHHHHHhcCCceeHHHHHHHHHHcCCCHHHHHHHHHHhhhccCH
Confidence 56677788876 9999999999999999765 8999999877666
No 153
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=52.77 E-value=38 Score=28.22 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE 75 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe 75 (140)
.-++..+ |.+|..+++.+.|+..|.+.++..|.--.|=.
T Consensus 217 ~dAl~kl-g~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 217 ADAMFKV-GVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred hHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 3344444 99999999999999999999999998776533
No 154
>PRK11906 transcriptional regulator; Provisional
Probab=51.95 E-value=32 Score=31.65 Aligned_cols=76 Identities=13% Similarity=0.085 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC--HHHHHHHHh-cCCCCc-------hhHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT--CEQETSLLS-SLEFGF-------EDGWLSSFY 108 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt--~~EE~eLl~-sL~f~~-------e~~~lk~lY 108 (140)
.-++.|.+....+.++.|..+|..|+.++|.+-.+|-.+=-.+.++ .++-.+.++ .|..+| -..||..+|
T Consensus 340 a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 340 ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 3466699999999999999999999999999888776554433333 344455565 488876 246888888
Q ss_pred HHhhhc
Q 032443 109 SCLIKK 114 (140)
Q Consensus 109 ~srL~K 114 (140)
.+.|+.
T Consensus 420 ~~~~~~ 425 (458)
T PRK11906 420 PNPLKN 425 (458)
T ss_pred CCchhh
Confidence 888764
No 155
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.76 E-value=34 Score=17.69 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 51 GNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 51 ~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
++.++|+.-|..++..-|.+-+.+-+.++
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46789999999999999988888777664
No 156
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=51.36 E-value=13 Score=36.47 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
+.+..|+||+.++|...|.+.|-.-++.=|+|--=+-.|
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 467889999999999999999999999999998665544
No 157
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.67 E-value=37 Score=23.64 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
|.-+.-++.-.+.-++...|..||++|+.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33455667778899999999999998874
No 158
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.48 E-value=24 Score=30.72 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
..+|..++.+.+|..||-+.+.+.|+++==|.+|-+
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae 196 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAE 196 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 678999999999999999999999999999988854
No 159
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.58 E-value=22 Score=31.25 Aligned_cols=32 Identities=31% Similarity=0.259 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
-.|-|||++.+-=|-..|+.-++.+|.+||--
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 37899999999999999999999999999943
No 160
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=49.23 E-value=11 Score=34.30 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
.|-+.|=-|.+.--.|++..|+.||+-||.-|+...||++-|-
T Consensus 394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 394 AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 3455565677777899999999999999999999999998774
No 161
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=47.97 E-value=48 Score=22.26 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
.-..-+|.-.+..++.+.|..+|+.|+.
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345578888999999999999999874
No 162
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=47.95 E-value=39 Score=29.04 Aligned_cols=41 Identities=17% Similarity=0.007 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 42 LRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 42 LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
+.++++...++.+.|...+..++..+|..-++...|..-++
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~ 198 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI 198 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45889999999999999999999999998876666655444
No 163
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=47.90 E-value=22 Score=32.13 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF 74 (140)
|--|.+|.=|.-.++.++|++-|.+-++.|+.-||+=
T Consensus 36 sr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ 72 (389)
T COG2956 36 SRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAH 72 (389)
T ss_pred cHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHH
Confidence 3468999999999999999999999999999999984
No 164
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=45.33 E-value=39 Score=31.11 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHccCCCHHHHHHHHhcCC-CC-ch---------------
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADP---LCYEALECLIENHMLTCEQETSLLSSLE-FG-FE--------------- 100 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv---~CyEAFe~Lv~~~lLt~~EE~eLl~sL~-f~-~e--------------- 100 (140)
.-||-+...+|-.++|..-|+..|.-+| ..-||-++|. -.+|.|.|++.|- .. ..
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~-----~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLA-----LIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHH-----hHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 4589999999999999999999999999 5667766665 4678999998663 22 10
Q ss_pred hHHHHHHHHHhhhccCCCcchhhhhccc
Q 032443 101 DGWLSSFYSCLIKKCRRYPFSGAIVHNI 128 (140)
Q Consensus 101 ~~~lk~lY~srL~Ky~~~~~~~~~~~~~ 128 (140)
.-|=-.||..|-+=|-...+.-..|..+
T Consensus 185 ~~Wda~l~~~Rakc~i~~~e~k~AI~Dl 212 (504)
T KOG0624|consen 185 QPWDASLRQARAKCYIAEGEPKKAIHDL 212 (504)
T ss_pred CcchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1388889999988888777666666543
No 165
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.00 E-value=29 Score=32.86 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------cHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPL----------CYEALEC 76 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~----------CyEAFe~ 76 (140)
=-+|-=|-..++++.|+.||-.|+.++|. |||+.--
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd 164 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGD 164 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhh
Confidence 34677788889999999999999999999 8887543
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=43.98 E-value=1.4e+02 Score=24.22 Aligned_cols=43 Identities=14% Similarity=-0.093 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
-+.-|.+|-.+++.+.|..+|.+.++.+|..-++=.++...+|
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3444999999999999999999999999998777665555554
No 167
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=43.62 E-value=49 Score=22.76 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
.|....-++.-.+.-+|...|..+|+.||.
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344556677777888999999999998875
No 168
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=43.47 E-value=31 Score=30.93 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhcCCCCc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGF 99 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f~~ 99 (140)
.-+.+||++...+|.+.|.++|..|+. +-..+.++- |+.--+=-|-.+-.++|..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~----~q~~~~Ql~--~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIE----SQSEWKQLH--HLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcc----chhhHHhHH--HHHHHHHHHHHHHHchHHH
Confidence 367889999999999999999999993 234455542 4444444555666666653
No 169
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=43.05 E-value=63 Score=21.25 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=23.9
Q ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 41 FLRGK-AYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 41 ~LRGk-~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
.+.+. +|..+++++.|..+|.+|+..++.
T Consensus 133 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (291)
T COG0457 133 ALLALGALYELGDYEEALELYEKALELDPE 162 (291)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34455 899999999999999999887774
No 170
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.84 E-value=84 Score=28.68 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=34.4
Q ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 032443 31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALEC 76 (140)
Q Consensus 31 ~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~ 76 (140)
.++| ||-..+=.+.=.-..|++++|...|.-||+++|.+-+++-+
T Consensus 111 a~~k-EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e 155 (472)
T KOG3824|consen 111 AKVK-EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIE 155 (472)
T ss_pred hhhH-HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4444 66655554555567899999999999999999999987543
No 171
>PF14293 YWFCY: YWFCY protein
Probab=40.81 E-value=21 Score=24.51 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 50 LGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 50 l~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
.=++.||+.-..-++.+=.+||+||...
T Consensus 12 Imdf~R~iSI~~l~ih~Y~~CY~af~~w 39 (61)
T PF14293_consen 12 IMDFMRAISILFLVIHFYWFCYEAFQEW 39 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3367899999999999999999999763
No 172
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.35 E-value=51 Score=27.54 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=34.6
Q ss_pred CCchhHHHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHhcCCCcH
Q 032443 30 DGEINISSAICFLRGKAY---------EALGNCAQARLWYKAAIIADPLCY 71 (140)
Q Consensus 30 d~gikl~ssmc~LRGk~y---------eal~N~~~A~~~YkeAL~~Dv~Cy 71 (140)
|-.=.+.|=+|=..|..+ ...++...|..++..|+.+|++|.
T Consensus 162 dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 162 DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 444457888888889988 355788899999999999999984
No 173
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.23 E-value=41 Score=28.74 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=50.7
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 032443 32 EINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSCL 111 (140)
Q Consensus 32 gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f~~e~~~lk~lY~sr 111 (140)
|....=++++| |.++-+++++..|...|..+.+-=|+|--|=++|..-.+-.. .| ...+--+..|..-
T Consensus 174 s~~~~nA~yWL-Ge~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~--------~l---~~~d~A~atl~qv 241 (262)
T COG1729 174 STYTPNAYYWL-GESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG--------RL---GNTDEACATLQQV 241 (262)
T ss_pred CcccchhHHHH-HHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH--------Hh---cCHHHHHHHHHHH
Confidence 33344566777 999999999999999999999999998877776664333211 11 1223345556666
Q ss_pred hhccCCC
Q 032443 112 IKKCRRY 118 (140)
Q Consensus 112 L~Ky~~~ 118 (140)
+++|-..
T Consensus 242 ~k~YP~t 248 (262)
T COG1729 242 IKRYPGT 248 (262)
T ss_pred HHHCCCC
Confidence 6666544
No 174
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=39.22 E-value=51 Score=31.96 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=36.4
Q ss_pred hHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 032443 34 NISSAIC-FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALEC 76 (140)
Q Consensus 34 kl~ssmc-~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~ 76 (140)
.+.|-+| +.-|.++-.-...+.|..||+.||++++.+-+-+.-
T Consensus 71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrD 114 (700)
T KOG1156|consen 71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRD 114 (700)
T ss_pred CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3456676 467999999999999999999999999999877654
No 175
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=39.17 E-value=71 Score=22.91 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=33.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHH
Q 032443 49 ALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSL 91 (140)
Q Consensus 49 al~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eL 91 (140)
..++-.+|...++.||.....+-+.|..| .+|.+.-.||--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~l--G~l~qA~~e~Gk 58 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVL--GYLIQAHMEWGK 58 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHH--HHHHHHHHHHHH
Confidence 78899999999999999999999988876 455566666643
No 176
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=37.45 E-value=31 Score=29.97 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE 72 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE 72 (140)
-.|| ||-|..+|..+.|..-||-|+...|++|=
T Consensus 240 yFYL-~K~~l~~G~~~~A~~LfKLaiannVynfV 272 (297)
T COG4785 240 YFYL-GKYYLSLGDLDEATALFKLAVANNVYNFV 272 (297)
T ss_pred HHHH-HHHHhccccHHHHHHHHHHHHHHhHHHHH
Confidence 3555 99999999999999999999999999873
No 177
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.17 E-value=46 Score=30.92 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF 74 (140)
.=-++|+ |+|...+...+-|.+|+..|++.-|. .-|.
T Consensus 247 ARY~yY~-GrIkaiqldYssA~~~~~qa~rkapq-~~al 283 (493)
T KOG2581|consen 247 ARYLYYL-GRIKAIQLDYSSALEYFLQALRKAPQ-HAAL 283 (493)
T ss_pred HHHHHHH-hhHHHhhcchhHHHHHHHHHHHhCcc-hhhh
Confidence 3446666 99999999999999999999999997 4443
No 178
>PRK11906 transcriptional regulator; Provisional
Probab=35.52 E-value=58 Score=30.06 Aligned_cols=49 Identities=20% Similarity=-0.048 Sum_probs=39.5
Q ss_pred HHH--HHHHHHHHHHHcCCH---HHHHHHHHHHH---hcCCCcHHHHHHHHHccCCC
Q 032443 36 SSA--ICFLRGKAYEALGNC---AQARLWYKAAI---IADPLCYEALECLIENHMLT 84 (140)
Q Consensus 36 ~ss--mc~LRGk~yeal~N~---~~A~~~YkeAL---~~Dv~CyEAFe~Lv~~~lLt 84 (140)
.|. .+||||+.+....++ .+|...|.+|+ .+||.+-+|+-.|-..|+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~ 308 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL 308 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH
Confidence 556 679999999766654 68889999999 99999988888777666543
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=35.04 E-value=58 Score=16.81 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=18.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Q 032443 45 KAYEALGNCAQARLWYKAAIIAD 67 (140)
Q Consensus 45 k~yeal~N~~~A~~~YkeAL~~D 67 (140)
.+|...++.++|.+.|.+-.+.+
T Consensus 8 ~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 8 SGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred HHHHccchHHHHHHHHHHHhHCc
Confidence 46788999999999998866543
No 180
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.65 E-value=16 Score=36.51 Aligned_cols=56 Identities=20% Similarity=0.393 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCcHHHHH----HHHHccCCCHHHHHHHH
Q 032443 37 SAICFLRGKAYEAL---------GNCAQARLWYKAAIIADPLCYEALE----CLIENHMLTCEQETSLL 92 (140)
Q Consensus 37 ssmc~LRGk~yeal---------~N~~~A~~~YkeAL~~Dv~CyEAFe----~Lv~~~lLt~~EE~eLl 92 (140)
.-|++|.||||--+ +.++.|.+||+.|+..-|.-|--.+ .+...+=.+..+|...|
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~I 346 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQI 346 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHH
Confidence 34678889998643 6788999999999999998775433 34455556666665554
No 181
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=33.27 E-value=64 Score=29.91 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 032443 33 INISSAICFLRGKAYEALGNCAQARLWYKAAIIADP 68 (140)
Q Consensus 33 ikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv 68 (140)
..+-++|+---|.+|..++++..|+..|++||.+=-
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344667777569999999999999999999998744
No 182
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=32.48 E-value=84 Score=21.46 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
.-+|.-....++.+.|..+|..||..
T Consensus 10 v~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 10 VVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33667788889999999999999863
No 183
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=32.20 E-value=65 Score=28.27 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 33 INISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 33 ikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
.+=.|.=+.|-|.-|...+.+..|..||+.|+.+
T Consensus 366 ~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 366 FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4435666889999999999999999999999875
No 184
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.08 E-value=98 Score=22.86 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAI 64 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL 64 (140)
.|..+---+..+|..+|+.+|.+-|..++
T Consensus 98 ~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 98 LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 45566677999999999999999999875
No 185
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=31.39 E-value=68 Score=27.51 Aligned_cols=30 Identities=27% Similarity=0.138 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 50 LGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 50 l~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
..-+++|+..+..|+.++|++.-|+..|+.
T Consensus 112 ~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 112 HQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 345789999999999999999999999973
No 186
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.89 E-value=1.7e+02 Score=26.66 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=45.0
Q ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH---HHccCCCHHHHHHHH
Q 032443 40 CFLRG-KAYEALGNCAQARLWYKAAIIADPLCYEALECL---IENHMLTCEQETSLL 92 (140)
Q Consensus 40 c~LRG-k~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L---v~~~lLt~~EE~eLl 92 (140)
|+.|| +|+..|+.+..|+.|.-+.|.+|...-.|-+.. ..+.++.-.+++++=
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l~~k~~~~~L~~er~~r 211 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNLIHKNDKLKLIEERDVR 211 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCcchHHHHHHHHHHH
Confidence 66665 788899999999999999999999998888777 677777777777765
No 187
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.69 E-value=1.7e+02 Score=21.17 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADP 68 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv 68 (140)
.+.--+..|+++-..+++++|+..|+.++...+
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~ 79 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANAP 79 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 344455679999999999999999999999763
No 188
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=29.37 E-value=95 Score=26.65 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=10.5
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 032443 44 GKAYEALGNCAQARLWYK 61 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~Yk 61 (140)
|+++..++++++|.++|.
T Consensus 342 g~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHcccHHHHHHHHH
Confidence 555555555555555555
No 189
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=29.33 E-value=90 Score=26.77 Aligned_cols=37 Identities=3% Similarity=-0.299 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH--HHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCY--EALECL 77 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy--EAFe~L 77 (140)
.++.......+|...+......+++.+|... .....|
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 6677777777888888888888888888888 555444
No 190
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=28.51 E-value=86 Score=29.63 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHh
Q 032443 51 GNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLS 93 (140)
Q Consensus 51 ~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~ 93 (140)
-|..+-+..=++||.++|.|-.|+--|-+-.-.|..|..+++.
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~r 224 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLR 224 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHH
Confidence 4666667778899999999999999999999999998888774
No 191
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=28.26 E-value=65 Score=31.83 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=43.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCH--HHHHHHHhcCC
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTC--EQETSLLSSLE 96 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~--~EE~eLl~sL~ 96 (140)
|+.|=+---.++|.+||-.|+++||...+||--+....+.-- +...+++.+-.
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 677777778899999999999999999999999988877654 55666765543
No 192
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=28.14 E-value=96 Score=15.98 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=19.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Q 032443 45 KAYEALGNCAQARLWYKAAIIADP 68 (140)
Q Consensus 45 k~yeal~N~~~A~~~YkeAL~~Dv 68 (140)
.+|...++.++|.+.|.+-.+..+
T Consensus 8 ~~~~~~~~~~~a~~~~~~M~~~g~ 31 (35)
T TIGR00756 8 DGLCKAGRVEEALELFKEMLERGI 31 (35)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCC
Confidence 357889999999999988766543
No 193
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.26 E-value=64 Score=29.16 Aligned_cols=30 Identities=30% Similarity=0.114 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
+-+||+++-.++|+..|+.-+..|+++|..
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 557899999999999999999999888864
No 194
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=26.70 E-value=1.6e+02 Score=28.21 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=11.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPLCYEA 73 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEA 73 (140)
|++-.+++..+.|..++..++.++|..-.|
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a 122 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPDSSEA 122 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCcHHH
Confidence 333333333333333333333333333333
No 195
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.40 E-value=1.3e+02 Score=20.89 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=20.9
Q ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 37 SAICFL-RGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 37 ssmc~L-RGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
-++.++ +|---..-+|.+.|..+|..||..
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 344444 344455678999999999999864
No 196
>PRK15331 chaperone protein SicA; Provisional
Probab=26.35 E-value=44 Score=26.73 Aligned_cols=39 Identities=10% Similarity=-0.034 Sum_probs=31.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
|-|+-.+++.++|.++|..|..+|+..+-.+-..=+-+|
T Consensus 78 aa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 78 AAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 778999999999999999999999887666554444443
No 197
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=25.57 E-value=1.3e+02 Score=27.15 Aligned_cols=48 Identities=25% Similarity=0.120 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCE 86 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~ 86 (140)
-.|=||..|..+.|.++|.+|++.|...+|.-.+=-+++.....++.+
T Consensus 311 a~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 311 AHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred HHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 467889999999999999999999998888877776666665555443
No 198
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.33 E-value=1.7e+02 Score=23.69 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 032443 32 EINISSAICFLRGKAYEALGNCAQARLWYKAAI 64 (140)
Q Consensus 32 gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL 64 (140)
..++.+.+.+..|+-|..+++.++|...|..++
T Consensus 173 ~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 173 QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355677788889999999999999999999883
No 199
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=24.89 E-value=58 Score=30.25 Aligned_cols=20 Identities=35% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCCc
Q 032443 51 GNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 51 ~N~~~A~~~YkeAL~~Dv~C 70 (140)
+.++.|+..|.+|+++||.|
T Consensus 18 ~~fd~avdlysKaI~ldpnc 37 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNC 37 (476)
T ss_pred chHHHHHHHHHHHHhcCCcc
No 200
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=24.59 E-value=65 Score=29.66 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCH
Q 032443 53 CAQARLWYKAAIIADPLCYEALECLIENHMLTC 85 (140)
Q Consensus 53 ~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~ 85 (140)
+..|..++..+|..||.||..++.|...|+..+
T Consensus 166 ~~E~~~~li~CLt~d~~c~~~Wr~lY~knl~~S 198 (469)
T PF10151_consen 166 KKELISILIWCLTQDPDCFKVWRQLYKKNLKQS 198 (469)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhHHHH
Confidence 456889999999999999999999999988554
No 201
>KOG4444 consensus Peroxisomal assembly protein PEX3 [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.18 E-value=1.4e+02 Score=26.83 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhcCCCCchhHHHHHHHHH
Q 032443 56 ARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFEDGWLSSFYSC 110 (140)
Q Consensus 56 A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f~~e~~~lk~lY~s 110 (140)
+......|+..+..--+-.++|-++++|||.+..+|=+.|..-.--..+..+|++
T Consensus 72 llp~l~~~i~eeldvdsi~eqLkqk~~Ltp~~KleLWeeLKI~sftrl~~~vysv 126 (359)
T KOG4444|consen 72 LLPVLRMAINEELDVDSIVEQLKQKNQLTPKNKLELWEELKIKSFTRLVTVVYSV 126 (359)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888877777778888889999999999999888776544455555543
No 202
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=23.65 E-value=1.4e+02 Score=24.36 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=30.5
Q ss_pred chhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q 032443 32 EINISSAICFLRGKAYEALG-NCAQARLWYKAAIIA 66 (140)
Q Consensus 32 gikl~ssmc~LRGk~yeal~-N~~~A~~~YkeAL~~ 66 (140)
...--|-+||--|+-....+ +++.|..|.++|+.+
T Consensus 30 ~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 30 MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34457889999999999999 999999999999766
No 203
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=23.57 E-value=1.1e+02 Score=25.16 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHH----HHHHHccCCCHHH
Q 032443 51 GNCAQARLWYKAAIIADPLCYEAL----ECLIENHMLTCEQ 87 (140)
Q Consensus 51 ~N~~~A~~~YkeAL~~Dv~CyEAF----e~Lv~~~lLt~~E 87 (140)
.=...|+.=|.+||++||+-.+|+ +++++..-|+|+.
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~ 89 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDT 89 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCCh
Confidence 345678888999999999999999 4668888888876
No 204
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=23.39 E-value=2.8e+02 Score=19.67 Aligned_cols=44 Identities=16% Similarity=0.035 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhcCCCC
Q 032443 55 QARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFG 98 (140)
Q Consensus 55 ~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f~ 98 (140)
.|.+.++..|.-|..=-+-++.|++.+.||++++.++..+=.+.
T Consensus 3 ~~L~~~R~~L~~~l~~~~l~d~L~q~~VLt~~d~EeI~~~~t~~ 46 (86)
T cd08785 3 EALEGMRHRLTRKINPSRLTPYLRQCKVLDEQDEEEVLSSPRLP 46 (86)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCCHHHHHHHhCCCccc
Confidence 35677888888888888999999999999999999988765543
No 205
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=23.32 E-value=1.4e+02 Score=27.66 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
-..++| |.+|...+.+++|..+|+.||++
T Consensus 200 ~~~~~L-a~~y~~~g~~e~A~~l~k~Al~~ 228 (508)
T KOG1840|consen 200 RTLRNL-AEMYAVQGRLEKAEPLCKQALRI 228 (508)
T ss_pred HHHHHH-HHHHHHhccHHHHHHHHHHHHHH
Confidence 344555 99999999999999999999999
No 206
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=22.87 E-value=88 Score=28.95 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 42 LRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 42 LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
-||.+-++|++...|+.-|..+|++.|+.-|-=..+
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 478899999999999999999999999987754443
No 207
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=1.1e+02 Score=28.94 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTC 85 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~ 85 (140)
..|+|...-++++...|+-.|++|..+-|.--+.++-||..+|=+.
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 5689999999999999999999999999877777777777665443
No 208
>TIGR02568 LcrE type III secretion regulator YopN/LcrE/InvE/MxiC. This protein is found in type III secretion operons and, in Yersinia is localized to the cell surface and is involved in the Low-Calicium Response (LCR), possibly by sensing the calcium concentration. In Salmonella, the gene is known as InvE and is believed to perform an essential role in the secretion process and interacts with the proteins SipBCD and SicA.//Altered name to reflect regulatory role. Added GO and role IDs. Negative regulation of type III secretion in Y pestis is mediated in part by a multiprotein complex that has been proposed to act as a physical impediment to type III secretion by blocking the entrance to the secretion apparatus prior to contact with mammalian cells. This complex is composed of YopN, its heterodimeric secretion chaperone SycN-YscB, and TyeA. PubMed: 15701523
Probab=22.82 E-value=1.6e+02 Score=24.08 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCHHH--HHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 40 CFLRGKAYEALGNCAQ--ARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 40 c~LRGk~yeal~N~~~--A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
+.+.++.|....+.+. =+..|.+++.-+.-|...|+.+++..
T Consensus 138 ~al~a~~f~~~~~~~~~~LR~lYr~~v~~~~~~~~~~~~~~~~~ 181 (240)
T TIGR02568 138 TALAAAAFADQGDLKAAALRDLYRQAVSDQSSLVQLLSDLIERY 181 (240)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHcCCccHHHHHHHHHHHh
Confidence 4566777777666433 58999999999999999999999754
No 209
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=22.76 E-value=2.1e+02 Score=27.64 Aligned_cols=26 Identities=31% Similarity=0.135 Sum_probs=13.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
.-|||.|+|..+|.+||++|..+=|.
T Consensus 565 aniye~led~aqaie~~~q~~slip~ 590 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSLIPN 590 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhcccCCC
Confidence 34555555555555555555544333
No 210
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.71 E-value=75 Score=21.19 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 032443 50 LGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 50 l~N~~~A~~~YkeAL~~Dv~ 69 (140)
-.|.++|+.+|++.|..++.
T Consensus 6 v~d~~~a~~FY~~~lg~~~~ 25 (114)
T cd07261 6 VEDPAASAEFYSELLGREPV 25 (114)
T ss_pred ECCHHHHHHHHHHHcCCCcc
Confidence 46899999999999998865
No 211
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=22.49 E-value=87 Score=31.85 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKA 62 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~Yke 62 (140)
++=--|-+||++-|+++|.+|||.
T Consensus 663 lydkagdlfeki~d~dkale~fkk 686 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKK 686 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHc
Confidence 344456778899999999999985
No 212
>PRK04841 transcriptional regulator MalT; Provisional
Probab=22.38 E-value=1.7e+02 Score=27.16 Aligned_cols=35 Identities=14% Similarity=0.012 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
.+-...+.|.+|..+++.++|..++.+||.+-..+
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 44556788999999999999999999999876544
No 213
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=22.03 E-value=2.1e+02 Score=26.78 Aligned_cols=40 Identities=28% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
..+-+++|+.+||+.+|...|.|++..+-.--+|.+.|..
T Consensus 411 w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 411 WDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4455889999999999999999999888888888777653
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.97 E-value=1.1e+02 Score=27.75 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=26.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 032443 44 GKAYEALGNCAQARLWYKAAIIADPLCYEALEC 76 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~ 76 (140)
.-||.+|+....|+++--.+|.+|+.+--|+-+
T Consensus 264 A~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyR 296 (397)
T KOG0543|consen 264 AACYLKLKEYKEAIESCNKVLELDPNNVKALYR 296 (397)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHH
Confidence 344457788889999999999999999877643
No 215
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=21.76 E-value=2.4e+02 Score=20.06 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHh
Q 032443 54 AQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLS 93 (140)
Q Consensus 54 ~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~ 93 (140)
.+|.+..+..|.-|..=-+-|+.|++.+.||++++.+...
T Consensus 2 ~~~L~~~R~~L~~~L~~~~l~d~L~s~~ILt~~d~EeI~~ 41 (84)
T cd08810 2 KEVLEELRHYLCDKIIADRHFDYLRSKRILTRDDCEEISC 41 (84)
T ss_pred hHHHHHHHHHHHHHhcHHHHHHHHHHcCCCCHHHHHHHhc
Confidence 3677888889999999899999999999999998877654
No 216
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=21.44 E-value=1.6e+02 Score=20.00 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=27.1
Q ss_pred HHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhcCCCC
Q 032443 60 YKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFG 98 (140)
Q Consensus 60 YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f~ 98 (140)
-+.+|.-|+..-.-++.|++++.||.+|...+- +.+-.
T Consensus 12 ~r~~l~~~l~~~~vld~L~~~~Vlt~~e~e~i~-~~~t~ 49 (88)
T smart00114 12 NRVRLGEELGVDGLLDYLVEKNVLTEKEIEAIK-AATTK 49 (88)
T ss_pred hHHHHHHHcchhHHHHHHHHcCCCCHHHHHHHH-ccCCh
Confidence 345666666777899999999999988765544 34433
No 217
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=21.43 E-value=1.2e+02 Score=27.57 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
+=|..+|.+|++++....|.+++.+||.
T Consensus 362 ~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 362 SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3478889999999999999999999984
No 218
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=21.37 E-value=1.9e+02 Score=17.11 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=20.2
Q ss_pred HHHHHHcCCHHHHHHH--HHHHHhcCCCc
Q 032443 44 GKAYEALGNCAQARLW--YKAAIIADPLC 70 (140)
Q Consensus 44 Gk~yeal~N~~~A~~~--YkeAL~~Dv~C 70 (140)
|-.+-.+++.+.|.+. |+-+..+|+++
T Consensus 8 a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4556678899999999 77888888764
No 219
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=21.16 E-value=1.6e+02 Score=16.14 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCCcHHHHHH
Q 032443 57 RLWYKAAIIADPLCYEALEC 76 (140)
Q Consensus 57 ~~~YkeAL~~Dv~CyEAFe~ 76 (140)
.+.=+++|..||++|-|+.-
T Consensus 3 l~~~~~~l~~~pknys~W~y 22 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNY 22 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHH
Confidence 34557899999999999864
No 220
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=21.08 E-value=90 Score=31.92 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAI 64 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL 64 (140)
+-||.-||-||..+.+.+|+.+|-.|=
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 568888999999999999999987763
No 221
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=20.69 E-value=1e+02 Score=23.93 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=29.3
Q ss_pred CCCchhHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCC
Q 032443 29 EDGEINISSAICFL-RGKAYEALGNCAQARLWYKAAIIADP 68 (140)
Q Consensus 29 ~d~gikl~ssmc~L-RGk~yeal~N~~~A~~~YkeAL~~Dv 68 (140)
..+.++.+-.+.++ +|.-|...|+.+.|.++|.++...-+
T Consensus 27 ~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~ 67 (177)
T PF10602_consen 27 KSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT 67 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC
Confidence 34555554444433 59999999999999999999876543
No 222
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=20.46 E-value=91 Score=20.32 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=16.9
Q ss_pred HHHHHHHHHccCCCHHHHHHHH
Q 032443 71 YEALECLIENHMLTCEQETSLL 92 (140)
Q Consensus 71 yEAFe~Lv~~~lLt~~EE~eLl 92 (140)
-||++.||+.+.+||+=-...+
T Consensus 16 ~dtLDeli~~~~I~p~La~kVL 37 (49)
T PF02268_consen 16 TDTLDELIQEGKITPQLAMKVL 37 (49)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHH
Confidence 3899999999999998655544
No 223
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.35 E-value=71 Score=31.46 Aligned_cols=27 Identities=22% Similarity=0.086 Sum_probs=23.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443 45 KAYEALGNCAQARLWYKAAIIADPLCY 71 (140)
Q Consensus 45 k~yeal~N~~~A~~~YkeAL~~Dv~Cy 71 (140)
-||..|.-.++|++.|.||=+.||..+
T Consensus 402 ~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 402 VCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 467789999999999999999997654
No 224
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.23 E-value=1.7e+02 Score=18.99 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=23.7
Q ss_pred HHHhcCC-CcHHHHHHHHHccCCCHHHHHHHHhc
Q 032443 62 AAIIADP-LCYEALECLIENHMLTCEQETSLLSS 94 (140)
Q Consensus 62 eAL~~Dv-~CyEAFe~Lv~~~lLt~~EE~eLl~s 94 (140)
..|--+. ..-.-++.|++++.||.+|..++-..
T Consensus 6 ~~lv~~l~~~~~il~~L~~~~vlt~~e~~~i~~~ 39 (80)
T cd01671 6 LELVKDLLDVEDVLDHLLSDGVLTEEEYEKIRSE 39 (80)
T ss_pred HHHHHHHccHHHHHHHHHHcCCCCHHHHHHHHcC
Confidence 3344444 55667899999999998888776553
No 225
>PF03039 IL12: Interleukin-12 alpha subunit; InterPro: IPR004281 Interleukin 12 (IL-12) is a disulphide-bonded heterodimer consisting of a 35kDa alpha subunit and a 40kDa beta subunit. It is involved in the stimulation and maintenance of Th1 cellular immune responses, including the normal host defence against various intracellular pathogens, such as Leishmania, Toxoplasma, Measles virus and Human immunodeficiency virus 1 (HIV). IL-12 also has an important role in pathological Th1 responses, such as in inflammatory bowel disease and multiple sclerosis. Suppression of IL-12 activity in such diseases may have therapeutic benefit. On the other hand, administration of recombinant IL-12 may have therapeutic benefit in conditions associated with pathological Th2 responses [, ].; GO: 0005143 interleukin-12 receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 3HMX_B 1F45_B.
Probab=20.19 E-value=1.4e+02 Score=25.18 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhcCCCCch------hHHHHHHHHHh
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGFE------DGWLSSFYSCL 111 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f~~e------~~~lk~lY~sr 111 (140)
..|+ .-|||-|.-...+...|.++|..||.--=.+ +..||+. =.+|++.|+|+.+ .-|=...|.+|
T Consensus 121 tlCL--ssIyEDLk~Y~~efka~~~~ll~~p~~qi~L----d~~mL~a--IdeLmQaLn~nsetvpqk~sl~e~d~Yk~r 192 (219)
T PF03039_consen 121 TLCL--SSIYEDLKMYQAEFKAINKKLLMDPERQISL----DQNMLAA--IDELMQALNFNSETVPQKPSLEEPDFYKTR 192 (219)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHCCSTT---SH----HHHHHHH--HHHHHHHH-----------------HHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHhhhHhhcCchhhhhh----hHHHHHH--HHHHHHHcCCCCCCCCCCCCcCCCCcHHHH
Confidence 3454 4679999999999999999999999876555 3344433 3468888888753 24777888887
Q ss_pred hh
Q 032443 112 IK 113 (140)
Q Consensus 112 L~ 113 (140)
+|
T Consensus 193 lK 194 (219)
T PF03039_consen 193 LK 194 (219)
T ss_dssp HH
T ss_pred HH
Confidence 75
Done!