Query 032443
Match_columns 140
No_of_seqs 109 out of 139
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 23:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 97.9 6.9E-05 2.4E-09 61.1 9.8 95 28-122 191-289 (597)
2 3vtx_A MAMA; tetratricopeptide 97.6 0.00013 4.3E-09 51.0 6.0 44 37-80 5-48 (184)
3 4gco_A Protein STI-1; structur 97.5 0.00024 8.3E-09 49.0 6.2 42 37-78 47-88 (126)
4 4gco_A Protein STI-1; structur 97.1 0.0011 3.6E-08 45.7 6.2 41 38-78 14-54 (126)
5 4ga2_A E3 SUMO-protein ligase 97.1 0.0013 4.5E-08 46.1 6.2 40 40-79 34-73 (150)
6 4ga2_A E3 SUMO-protein ligase 97.0 0.0014 4.6E-08 46.1 5.7 43 37-79 65-107 (150)
7 2kc7_A BFR218_protein; tetratr 97.0 0.002 6.9E-08 40.8 5.8 36 39-74 37-72 (99)
8 1na3_A Designed protein CTPR2; 96.9 0.0036 1.2E-07 38.3 6.2 43 37-79 9-51 (91)
9 3upv_A Heat shock protein STI1 96.8 0.0031 1.1E-07 41.6 6.2 43 37-79 38-80 (126)
10 3urz_A Uncharacterized protein 96.7 0.0043 1.5E-07 45.4 6.9 45 35-79 52-96 (208)
11 1na3_A Designed protein CTPR2; 96.7 0.0052 1.8E-07 37.5 6.4 41 38-78 44-84 (91)
12 3vtx_A MAMA; tetratricopeptide 96.7 0.0035 1.2E-07 43.6 6.2 40 39-78 109-148 (184)
13 3rkv_A Putative peptidylprolyl 96.7 0.0039 1.3E-07 43.2 6.2 66 36-101 62-130 (162)
14 3rkv_A Putative peptidylprolyl 96.7 0.0034 1.2E-07 43.5 5.9 40 38-77 98-137 (162)
15 2l6j_A TPR repeat-containing p 96.7 0.0047 1.6E-07 39.0 6.1 44 37-80 4-47 (111)
16 1hxi_A PEX5, peroxisome target 96.7 0.0043 1.5E-07 42.1 6.2 37 41-77 21-57 (121)
17 3ma5_A Tetratricopeptide repea 96.7 0.0038 1.3E-07 40.8 5.6 43 38-80 8-50 (100)
18 3sz7_A HSC70 cochaperone (SGT) 96.7 0.0045 1.6E-07 42.9 6.2 45 37-81 45-89 (164)
19 2l6j_A TPR repeat-containing p 96.6 0.0062 2.1E-07 38.4 6.1 34 37-70 38-71 (111)
20 3q49_B STIP1 homology and U bo 96.5 0.0076 2.6E-07 39.6 6.2 40 39-78 45-84 (137)
21 2kck_A TPR repeat; tetratricop 96.4 0.01 3.5E-07 36.7 6.2 41 39-79 42-84 (112)
22 3upv_A Heat shock protein STI1 96.4 0.0094 3.2E-07 39.2 6.4 47 36-82 3-49 (126)
23 2dba_A Smooth muscle cell asso 96.4 0.0098 3.3E-07 39.0 6.4 45 36-80 64-108 (148)
24 2kat_A Uncharacterized protein 96.4 0.0096 3.3E-07 38.8 6.2 42 38-79 20-61 (115)
25 1elw_A TPR1-domain of HOP; HOP 96.3 0.014 4.8E-07 36.3 6.5 66 37-102 38-106 (118)
26 2vyi_A SGTA protein; chaperone 96.3 0.014 4.7E-07 36.9 6.5 45 37-81 46-90 (131)
27 3k9i_A BH0479 protein; putativ 96.3 0.011 3.9E-07 39.0 6.2 44 36-79 26-69 (117)
28 2lni_A Stress-induced-phosphop 96.3 0.0088 3E-07 38.3 5.4 45 37-81 50-94 (133)
29 3u4t_A TPR repeat-containing p 96.3 0.0098 3.3E-07 43.1 6.2 43 37-79 221-263 (272)
30 2fbn_A 70 kDa peptidylprolyl i 96.2 0.01 3.4E-07 42.4 5.9 46 36-81 87-132 (198)
31 2xcb_A PCRH, regulatory protei 96.2 0.01 3.5E-07 40.5 5.7 37 41-77 56-92 (142)
32 3gyz_A Chaperone protein IPGC; 96.2 0.0082 2.8E-07 43.4 5.4 39 39-77 38-76 (151)
33 3sz7_A HSC70 cochaperone (SGT) 96.2 0.013 4.6E-07 40.5 6.3 47 36-82 10-56 (164)
34 3q49_B STIP1 homology and U bo 96.2 0.015 5.1E-07 38.1 6.2 46 37-82 9-54 (137)
35 4gcn_A Protein STI-1; structur 96.1 0.017 5.9E-07 39.3 6.4 42 36-77 6-48 (127)
36 2vgx_A Chaperone SYCD; alterna 96.1 0.012 4.1E-07 41.3 5.6 37 41-77 59-95 (148)
37 3urz_A Uncharacterized protein 96.0 0.013 4.5E-07 42.7 6.0 47 38-84 89-135 (208)
38 1hxi_A PEX5, peroxisome target 96.0 0.013 4.6E-07 39.7 5.6 44 38-81 52-95 (121)
39 1elw_A TPR1-domain of HOP; HOP 95.9 0.023 7.7E-07 35.3 6.0 45 37-81 4-48 (118)
40 2fbn_A 70 kDa peptidylprolyl i 95.9 0.021 7.3E-07 40.6 6.6 42 38-79 123-164 (198)
41 2vyi_A SGTA protein; chaperone 95.8 0.03 1E-06 35.3 6.2 47 36-82 11-57 (131)
42 3ieg_A DNAJ homolog subfamily 95.8 0.024 8.1E-07 42.0 6.5 67 35-101 270-339 (359)
43 2lni_A Stress-induced-phosphop 95.8 0.021 7.2E-07 36.5 5.4 49 36-84 15-63 (133)
44 1a17_A Serine/threonine protei 95.8 0.027 9.2E-07 37.5 6.1 43 37-79 47-89 (166)
45 1na0_A Designed protein CTPR3; 95.8 0.033 1.1E-06 34.8 6.2 44 38-81 44-87 (125)
46 1hh8_A P67PHOX, NCF-2, neutrop 95.8 0.025 8.4E-07 39.8 6.2 44 37-80 37-80 (213)
47 2dba_A Smooth muscle cell asso 95.7 0.038 1.3E-06 36.1 6.6 45 36-80 27-74 (148)
48 2kc7_A BFR218_protein; tetratr 95.7 0.023 8E-07 35.7 5.4 39 41-79 4-43 (99)
49 1elr_A TPR2A-domain of HOP; HO 95.7 0.038 1.3E-06 34.9 6.4 44 37-80 4-47 (131)
50 4i17_A Hypothetical protein; T 95.7 0.025 8.6E-07 40.6 6.1 41 39-79 44-84 (228)
51 1p5q_A FKBP52, FK506-binding p 95.7 0.022 7.4E-07 45.3 6.2 45 37-81 196-240 (336)
52 2xev_A YBGF; tetratricopeptide 95.7 0.039 1.3E-06 35.7 6.5 44 37-80 39-85 (129)
53 1a17_A Serine/threonine protei 95.7 0.032 1.1E-06 37.2 6.2 40 38-77 14-53 (166)
54 4i17_A Hypothetical protein; T 95.6 0.015 5E-07 41.9 4.7 47 36-82 116-164 (228)
55 2v5f_A Prolyl 4-hydroxylase su 95.6 0.047 1.6E-06 36.4 7.0 45 31-76 41-85 (104)
56 3gyz_A Chaperone protein IPGC; 95.6 0.031 1E-06 40.3 6.4 43 38-80 71-113 (151)
57 4gcn_A Protein STI-1; structur 95.6 0.036 1.2E-06 37.7 6.3 43 34-77 80-122 (127)
58 2h6f_A Protein farnesyltransfe 95.6 0.013 4.4E-07 48.5 4.7 36 39-74 133-169 (382)
59 2e2e_A Formate-dependent nitri 95.6 0.024 8.3E-07 39.2 5.5 43 38-80 45-87 (177)
60 1na0_A Designed protein CTPR3; 95.5 0.055 1.9E-06 33.7 6.7 46 37-82 9-54 (125)
61 2xev_A YBGF; tetratricopeptide 95.5 0.044 1.5E-06 35.4 6.4 29 43-71 8-36 (129)
62 2kck_A TPR repeat; tetratricop 95.5 0.013 4.3E-07 36.3 3.5 42 40-81 9-50 (112)
63 1p5q_A FKBP52, FK506-binding p 95.5 0.033 1.1E-06 44.2 6.6 43 38-80 231-273 (336)
64 2q7f_A YRRB protein; TPR, prot 95.4 0.031 1E-06 39.5 5.6 40 39-78 161-200 (243)
65 2pl2_A Hypothetical conserved 95.4 0.037 1.3E-06 40.5 6.2 43 38-80 40-82 (217)
66 1elr_A TPR2A-domain of HOP; HO 95.3 0.061 2.1E-06 33.9 6.4 40 37-77 79-118 (131)
67 1xnf_A Lipoprotein NLPI; TPR, 95.3 0.043 1.5E-06 39.5 6.2 44 36-79 42-85 (275)
68 3mkr_A Coatomer subunit epsilo 95.2 0.06 2.1E-06 41.8 7.3 72 38-109 201-276 (291)
69 1kt0_A FKBP51, 51 kDa FK506-bi 95.2 0.022 7.6E-07 47.4 4.9 47 36-82 316-362 (457)
70 2vgx_A Chaperone SYCD; alterna 95.1 0.059 2E-06 37.6 6.4 43 37-79 21-63 (148)
71 2xcb_A PCRH, regulatory protei 95.1 0.066 2.3E-06 36.3 6.4 45 37-81 18-62 (142)
72 2h6f_A Protein farnesyltransfe 95.0 0.041 1.4E-06 45.4 6.2 63 37-99 97-163 (382)
73 2pl2_A Hypothetical conserved 95.0 0.044 1.5E-06 40.1 5.6 42 39-80 7-48 (217)
74 3u4t_A TPR repeat-containing p 95.0 0.048 1.6E-06 39.4 5.6 46 37-82 74-119 (272)
75 1kt0_A FKBP51, 51 kDa FK506-bi 94.9 0.055 1.9E-06 45.0 6.6 43 38-80 352-394 (457)
76 4abn_A Tetratricopeptide repea 94.9 0.029 9.8E-07 46.7 4.8 43 37-79 102-145 (474)
77 1ihg_A Cyclophilin 40; ppiase 94.8 0.055 1.9E-06 44.1 6.2 46 36-81 272-317 (370)
78 2v5f_A Prolyl 4-hydroxylase su 94.8 0.041 1.4E-06 36.7 4.6 32 35-66 3-34 (104)
79 3uq3_A Heat shock protein STI1 94.7 0.079 2.7E-06 37.4 6.2 46 36-81 138-183 (258)
80 2fo7_A Synthetic consensus TPR 94.7 0.09 3.1E-06 32.8 5.8 40 40-79 38-77 (136)
81 2c2l_A CHIP, carboxy terminus 94.6 0.057 1.9E-06 41.6 5.6 40 38-77 39-78 (281)
82 1zu2_A Mitochondrial import re 94.6 0.039 1.3E-06 41.9 4.6 38 40-77 83-131 (158)
83 3as5_A MAMA; tetratricopeptide 94.6 0.12 4.1E-06 34.3 6.5 42 38-79 77-118 (186)
84 3uq3_A Heat shock protein STI1 94.6 0.078 2.7E-06 37.5 5.8 45 38-82 174-218 (258)
85 1pc2_A Mitochondria fission pr 94.5 0.072 2.5E-06 40.4 5.8 38 38-76 73-110 (152)
86 1xnf_A Lipoprotein NLPI; TPR, 94.5 0.074 2.5E-06 38.2 5.7 43 38-80 78-120 (275)
87 2if4_A ATFKBP42; FKBP-like, al 94.4 0.063 2.2E-06 42.7 5.6 64 38-101 231-297 (338)
88 2vq2_A PILW, putative fimbrial 94.4 0.12 4.1E-06 35.7 6.4 46 39-84 44-89 (225)
89 3ma5_A Tetratricopeptide repea 94.4 0.033 1.1E-06 36.2 3.3 31 39-69 43-73 (100)
90 2fo7_A Synthetic consensus TPR 94.4 0.15 5.1E-06 31.7 6.3 42 39-80 71-112 (136)
91 1w3b_A UDP-N-acetylglucosamine 94.3 0.095 3.3E-06 40.4 6.3 41 38-78 68-108 (388)
92 3hym_B Cell division cycle pro 94.3 0.041 1.4E-06 40.4 3.9 67 37-103 236-305 (330)
93 3fp2_A TPR repeat-containing p 94.2 0.086 3E-06 41.9 6.0 44 38-81 60-103 (537)
94 2if4_A ATFKBP42; FKBP-like, al 94.2 0.027 9.4E-07 44.8 3.0 41 38-78 265-305 (338)
95 2gw1_A Mitochondrial precursor 94.1 0.11 3.8E-06 40.8 6.3 46 37-82 39-84 (514)
96 4abn_A Tetratricopeptide repea 94.1 0.095 3.2E-06 43.5 6.2 43 37-79 258-300 (474)
97 4eqf_A PEX5-related protein; a 94.0 0.13 4.6E-06 39.1 6.5 40 40-79 68-107 (365)
98 1ihg_A Cyclophilin 40; ppiase 94.0 0.1 3.4E-06 42.6 6.1 43 37-79 307-349 (370)
99 1hh8_A P67PHOX, NCF-2, neutrop 94.0 0.16 5.3E-06 35.6 6.4 34 37-70 121-154 (213)
100 2vq2_A PILW, putative fimbrial 94.0 0.19 6.4E-06 34.7 6.6 44 37-80 113-156 (225)
101 3as5_A MAMA; tetratricopeptide 93.9 0.2 6.8E-06 33.2 6.5 44 37-80 42-85 (186)
102 2y4t_A DNAJ homolog subfamily 93.9 0.12 4.2E-06 40.1 6.1 41 38-78 330-370 (450)
103 3bee_A Putative YFRE protein; 93.9 0.14 4.9E-06 34.3 5.8 41 38-78 7-50 (93)
104 1fch_A Peroxisomal targeting s 93.9 0.16 5.3E-06 38.3 6.5 41 39-79 66-106 (368)
105 4gyw_A UDP-N-acetylglucosamine 93.7 0.11 3.9E-06 46.8 6.4 37 41-77 47-83 (723)
106 3ieg_A DNAJ homolog subfamily 93.7 0.15 5.1E-06 37.6 6.0 43 38-80 38-80 (359)
107 2hr2_A Hypothetical protein; a 93.6 0.17 5.8E-06 38.3 6.3 39 36-74 56-101 (159)
108 2e2e_A Formate-dependent nitri 93.4 0.18 6.2E-06 34.7 5.8 43 38-80 79-124 (177)
109 1fch_A Peroxisomal targeting s 93.4 0.18 6.2E-06 37.9 6.2 44 37-80 217-260 (368)
110 2hr2_A Hypothetical protein; a 93.4 0.14 4.9E-06 38.7 5.6 35 36-70 10-44 (159)
111 2q7f_A YRRB protein; TPR, prot 93.4 0.25 8.5E-06 34.7 6.5 38 40-77 60-97 (243)
112 2r5s_A Uncharacterized protein 93.2 0.21 7.3E-06 34.9 5.9 40 38-77 109-150 (176)
113 3fp2_A TPR repeat-containing p 93.2 0.095 3.2E-06 41.7 4.5 46 36-81 24-69 (537)
114 3cv0_A Peroxisome targeting si 93.2 0.25 8.7E-06 36.1 6.5 39 40-78 58-96 (327)
115 2pzi_A Probable serine/threoni 93.2 0.11 3.7E-06 45.5 5.2 37 39-75 435-471 (681)
116 4eqf_A PEX5-related protein; a 93.2 0.2 7E-06 38.1 6.2 41 39-79 215-255 (365)
117 1w3b_A UDP-N-acetylglucosamine 93.2 0.15 5.2E-06 39.3 5.5 41 40-80 308-348 (388)
118 3hym_B Cell division cycle pro 93.1 0.13 4.5E-06 37.7 4.9 42 38-79 271-312 (330)
119 2ho1_A Type 4 fimbrial biogene 93.1 0.15 5.2E-06 36.4 5.2 42 37-78 37-78 (252)
120 2ho1_A Type 4 fimbrial biogene 93.1 0.28 9.5E-06 35.0 6.5 45 37-81 141-185 (252)
121 4gyw_A UDP-N-acetylglucosamine 93.1 0.15 5.1E-06 46.0 6.2 40 40-79 114-153 (723)
122 3k9i_A BH0479 protein; putativ 93.1 0.14 4.8E-06 33.5 4.6 37 37-73 61-97 (117)
123 2kat_A Uncharacterized protein 93.1 0.084 2.9E-06 34.2 3.4 32 39-70 55-86 (115)
124 2xpi_A Anaphase-promoting comp 93.0 0.2 6.8E-06 40.6 6.2 44 37-80 516-559 (597)
125 1zu2_A Mitochondrial import re 93.0 0.097 3.3E-06 39.7 4.1 40 40-79 39-88 (158)
126 2c2l_A CHIP, carboxy terminus 92.9 0.23 8E-06 38.1 6.2 45 37-81 4-48 (281)
127 2gw1_A Mitochondrial precursor 92.8 0.22 7.5E-06 39.0 6.0 39 40-78 415-456 (514)
128 1wao_1 Serine/threonine protei 92.8 0.21 7.1E-06 42.0 6.3 42 37-78 40-81 (477)
129 3cv0_A Peroxisome targeting si 92.7 0.33 1.1E-05 35.5 6.5 44 38-81 173-216 (327)
130 2y4t_A DNAJ homolog subfamily 92.6 0.29 1E-05 38.0 6.5 42 38-79 61-102 (450)
131 2vsy_A XCC0866; transferase, g 92.2 0.28 9.4E-06 40.9 6.2 39 41-79 95-133 (568)
132 1wao_1 Serine/threonine protei 91.7 0.2 6.9E-06 42.0 4.9 41 38-78 75-115 (477)
133 3qky_A Outer membrane assembly 91.6 0.41 1.4E-05 35.1 5.9 39 41-79 152-193 (261)
134 2ond_A Cleavage stimulation fa 91.6 0.37 1.3E-05 36.8 5.9 42 38-79 100-142 (308)
135 1dce_A Protein (RAB geranylger 91.5 0.22 7.6E-06 43.3 5.1 56 38-93 64-133 (567)
136 2vsy_A XCC0866; transferase, g 91.3 0.35 1.2E-05 40.3 5.9 39 40-78 60-98 (568)
137 2r5s_A Uncharacterized protein 91.3 0.1 3.6E-06 36.5 2.4 33 39-72 42-74 (176)
138 3ro2_A PINS homolog, G-protein 91.1 0.76 2.6E-05 33.1 6.8 36 37-72 5-40 (338)
139 3ly7_A Transcriptional activat 91.1 0.28 9.7E-06 41.9 5.2 48 34-81 193-243 (372)
140 2yhc_A BAMD, UPF0169 lipoprote 90.9 0.41 1.4E-05 34.9 5.3 36 38-73 42-77 (225)
141 3qky_A Outer membrane assembly 90.9 0.53 1.8E-05 34.5 5.9 44 37-80 52-98 (261)
142 4g1t_A Interferon-induced prot 90.8 0.51 1.7E-05 37.1 6.1 40 39-78 249-288 (472)
143 2pzi_A Probable serine/threoni 90.8 0.21 7.3E-06 43.7 4.3 46 38-83 535-580 (681)
144 4g1t_A Interferon-induced prot 90.7 0.44 1.5E-05 37.4 5.6 34 33-66 47-80 (472)
145 3qou_A Protein YBBN; thioredox 90.4 0.67 2.3E-05 35.5 6.3 58 38-95 118-177 (287)
146 3nf1_A KLC 1, kinesin light ch 90.1 0.32 1.1E-05 35.3 4.1 34 36-69 277-310 (311)
147 3edt_B KLC 2, kinesin light ch 90.0 0.45 1.5E-05 33.7 4.7 45 36-80 126-178 (283)
148 4f3v_A ESX-1 secretion system 89.9 1.8 6.3E-05 35.2 8.9 36 36-71 170-207 (282)
149 3ro3_A PINS homolog, G-protein 89.2 0.76 2.6E-05 29.4 5.0 32 35-66 87-118 (164)
150 1nzn_A CGI-135 protein, fissio 89.2 0.75 2.6E-05 33.8 5.5 37 38-75 76-112 (126)
151 3ro3_A PINS homolog, G-protein 89.1 0.81 2.8E-05 29.2 5.1 33 36-68 8-40 (164)
152 3dra_A Protein farnesyltransfe 88.9 0.52 1.8E-05 38.3 4.9 55 38-93 68-134 (306)
153 3qou_A Protein YBBN; thioredox 88.7 0.97 3.3E-05 34.6 6.1 40 39-78 221-262 (287)
154 3q7a_A Farnesyltransferase alp 88.6 0.78 2.7E-05 38.4 5.9 62 38-99 89-156 (349)
155 1ouv_A Conserved hypothetical 88.5 1.1 3.8E-05 32.7 6.1 26 43-68 188-217 (273)
156 3bee_A Putative YFRE protein; 88.3 0.59 2E-05 31.2 4.1 29 41-69 47-75 (93)
157 1qqe_A Vesicular transport pro 88.2 0.42 1.5E-05 36.4 3.7 35 39-73 201-235 (292)
158 3edt_B KLC 2, kinesin light ch 88.0 1 3.5E-05 31.8 5.4 47 36-82 84-138 (283)
159 3sf4_A G-protein-signaling mod 87.8 1.4 4.8E-05 33.1 6.4 36 37-72 9-44 (406)
160 1qqe_A Vesicular transport pro 87.4 0.88 3E-05 34.6 5.1 34 36-69 116-150 (292)
161 3ro2_A PINS homolog, G-protein 87.3 1 3.5E-05 32.4 5.1 36 34-69 260-295 (338)
162 3rjv_A Putative SEL1 repeat pr 87.1 1.4 4.9E-05 31.9 5.9 23 44-66 132-158 (212)
163 3u3w_A Transcriptional activat 86.8 0.81 2.8E-05 34.5 4.6 31 36-66 235-266 (293)
164 3nf1_A KLC 1, kinesin light ch 86.6 1.5 5.2E-05 31.6 5.7 44 36-79 152-203 (311)
165 3rjv_A Putative SEL1 repeat pr 86.5 1.6 5.3E-05 31.8 5.8 39 40-80 21-59 (212)
166 4a1s_A PINS, partner of inscut 86.4 0.78 2.7E-05 35.2 4.3 44 36-79 85-134 (411)
167 3q15_A PSP28, response regulat 86.4 1.4 4.8E-05 34.2 5.9 44 36-79 221-269 (378)
168 1ouv_A Conserved hypothetical 86.3 1.8 6.1E-05 31.6 6.1 38 40-79 41-82 (273)
169 3ulq_A Response regulator aspa 86.2 1.6 5.6E-05 33.7 6.1 44 36-79 223-272 (383)
170 3gw4_A Uncharacterized protein 86.1 1.5 5E-05 30.0 5.2 26 39-64 109-134 (203)
171 4f3v_A ESX-1 secretion system 85.5 1.4 4.8E-05 35.9 5.7 43 37-80 208-250 (282)
172 2yhc_A BAMD, UPF0169 lipoprote 85.2 2.4 8.1E-05 30.7 6.3 31 41-71 151-181 (225)
173 3dra_A Protein farnesyltransfe 85.0 1.4 4.9E-05 35.6 5.5 56 38-93 104-170 (306)
174 3ly7_A Transcriptional activat 84.1 0.99 3.4E-05 38.6 4.3 31 40-70 313-343 (372)
175 3dss_A Geranylgeranyl transfer 83.7 1 3.4E-05 37.3 4.1 56 37-93 64-134 (331)
176 3q15_A PSP28, response regulat 83.7 2.3 8E-05 33.0 6.0 46 37-82 261-311 (378)
177 1klx_A Cysteine rich protein B 83.3 3.3 0.00011 28.4 6.1 36 40-77 60-99 (138)
178 3mkr_A Coatomer subunit epsilo 83.2 1.5 5E-05 33.9 4.6 33 39-71 132-164 (291)
179 2qfc_A PLCR protein; TPR, HTH, 83.1 1.3 4.4E-05 33.4 4.2 31 36-66 235-266 (293)
180 4a1s_A PINS, partner of inscut 83.0 3.2 0.00011 31.7 6.4 37 36-72 47-83 (411)
181 1dce_A Protein (RAB geranylger 82.7 1.7 5.9E-05 37.7 5.3 55 39-93 109-168 (567)
182 3dss_A Geranylgeranyl transfer 82.3 1.6 5.6E-05 36.0 4.8 56 38-93 109-169 (331)
183 3sf4_A G-protein-signaling mod 81.8 1.8 6.2E-05 32.5 4.5 32 35-66 45-76 (406)
184 2ifu_A Gamma-SNAP; membrane fu 81.0 1.7 5.8E-05 33.2 4.2 31 39-70 197-227 (307)
185 3q7a_A Farnesyltransferase alp 81.0 1.6 5.6E-05 36.5 4.4 39 38-76 124-164 (349)
186 1klx_A Cysteine rich protein B 80.9 2.1 7.3E-05 29.4 4.3 28 40-67 96-127 (138)
187 3ulq_A Response regulator aspa 80.5 2 6.8E-05 33.3 4.5 30 37-66 103-132 (383)
188 3gw4_A Uncharacterized protein 79.3 2.8 9.4E-05 28.5 4.4 30 36-65 25-54 (203)
189 4gq2_M Nucleoporin NUP120; bet 79.1 1.1 3.8E-05 41.6 3.0 27 37-63 840-866 (950)
190 3u64_A Protein TP_0956; tetrat 78.9 5.2 0.00018 33.5 6.8 46 37-82 199-250 (301)
191 2ooe_A Cleavage stimulation fa 78.6 5.1 0.00018 32.8 6.6 43 37-79 321-364 (530)
192 2xm6_A Protein corresponding t 78.3 3.3 0.00011 33.6 5.3 38 40-77 402-446 (490)
193 2qfc_A PLCR protein; TPR, HTH, 77.1 3.8 0.00013 30.8 5.0 31 38-68 197-227 (293)
194 1y8m_A FIS1; mitochondria, unk 76.6 4.8 0.00017 30.4 5.4 36 39-75 80-115 (144)
195 3u3w_A Transcriptional activat 76.4 4 0.00014 30.6 5.0 36 34-69 193-228 (293)
196 4b4t_Q 26S proteasome regulato 76.3 3.8 0.00013 31.6 4.9 32 36-67 174-205 (434)
197 3o48_A Mitochondria fission 1 76.2 4.2 0.00014 30.4 4.9 36 39-75 81-116 (134)
198 2ifu_A Gamma-SNAP; membrane fu 75.9 2.8 9.4E-05 32.0 4.0 35 36-70 154-188 (307)
199 2ond_A Cleavage stimulation fa 75.6 3.5 0.00012 31.3 4.5 33 42-74 139-171 (308)
200 4a5x_A MITD1, MIT domain-conta 74.7 6.4 0.00022 26.7 5.2 33 34-66 13-45 (86)
201 1ya0_A SMG-7 transcript varian 74.6 4.9 0.00017 35.1 5.7 76 40-116 156-238 (497)
202 3t5x_A PCI domain-containing p 72.5 5.7 0.0002 30.4 5.0 43 38-80 15-57 (203)
203 4fhn_B Nucleoporin NUP120; pro 69.5 2.7 9.2E-05 39.4 3.0 26 38-63 843-868 (1139)
204 3mv2_B Coatomer subunit epsilo 67.6 8.3 0.00029 31.7 5.3 54 41-94 104-161 (310)
205 2ooe_A Cleavage stimulation fa 65.6 14 0.00048 30.1 6.3 33 48-80 23-55 (530)
206 2xm6_A Protein corresponding t 63.9 15 0.00051 29.6 6.1 36 40-77 78-117 (490)
207 1hz4_A MALT regulatory protein 62.4 14 0.00048 28.0 5.4 36 34-69 11-46 (373)
208 3qww_A SET and MYND domain-con 57.5 13 0.00045 31.3 4.8 36 30-66 376-411 (433)
209 1hz4_A MALT regulatory protein 56.5 18 0.00062 27.4 5.1 33 37-69 135-167 (373)
210 2w2u_A Hypothetical P60 katani 54.8 22 0.00074 23.9 4.7 29 37-65 19-47 (83)
211 2v6y_A AAA family ATPase, P60 54.3 22 0.00077 23.6 4.7 29 37-65 11-39 (83)
212 3e4b_A ALGK; tetratricopeptide 54.2 18 0.00063 29.4 5.1 35 40-74 179-216 (452)
213 3mv2_B Coatomer subunit epsilo 54.1 7.4 0.00025 32.0 2.7 69 37-108 213-293 (310)
214 3qwp_A SET and MYND domain-con 52.3 18 0.00062 30.2 4.8 35 31-66 366-400 (429)
215 3qww_A SET and MYND domain-con 52.1 22 0.00075 30.0 5.3 37 29-66 333-369 (433)
216 4b4t_Q 26S proteasome regulato 51.7 15 0.0005 28.3 3.9 37 36-73 55-91 (434)
217 3n71_A Histone lysine methyltr 51.7 18 0.00062 31.0 4.8 35 31-66 388-422 (490)
218 2v6x_A Vacuolar protein sortin 45.9 37 0.0013 22.3 4.7 30 36-65 12-41 (85)
219 2cpt_A SKD1 protein, vacuolar 44.5 34 0.0011 24.4 4.6 31 35-65 15-46 (117)
220 3ffl_A Anaphase-promoting comp 44.4 34 0.0012 26.2 4.9 35 32-66 58-92 (167)
221 1wfd_A Hypothetical protein 15 43.6 40 0.0014 22.8 4.7 30 36-65 14-43 (93)
222 3e4b_A ALGK; tetratricopeptide 43.1 24 0.00083 28.7 4.1 15 50-64 264-278 (452)
223 3qwp_A SET and MYND domain-con 43.0 35 0.0012 28.5 5.1 37 29-66 322-358 (429)
224 3eab_A Spastin; spastin, MIT, 41.5 23 0.00078 24.8 3.2 30 36-65 15-47 (89)
225 1b89_A Protein (clathrin heavy 41.4 28 0.00094 30.3 4.4 33 45-77 215-247 (449)
226 3t5v_B Nuclear mRNA export pro 41.0 32 0.0011 29.8 4.7 34 36-69 219-253 (455)
227 3n71_A Histone lysine methyltr 40.8 41 0.0014 28.8 5.3 36 30-66 345-380 (490)
228 2dl1_A Spartin; SPG20, MIT, st 40.1 43 0.0015 24.4 4.6 29 36-64 21-49 (116)
229 1xi4_A Clathrin heavy chain; a 30.6 59 0.002 33.1 5.2 27 37-63 1105-1131(1630)
230 2a5y_B CED-4; apoptosis; HET: 29.8 97 0.0033 26.2 5.9 40 54-93 7-46 (549)
231 4gns_B Protein CSD3, chitin bi 29.4 72 0.0025 29.4 5.3 37 42-79 618-654 (754)
232 3s6n_M SurviVal motor neuron p 29.3 40 0.0014 20.2 2.4 18 53-70 18-35 (37)
233 4b4t_S RPN3, 26S proteasome re 29.3 44 0.0015 29.8 3.7 38 32-69 265-302 (523)
234 3kae_A CDC27, possible protein 28.0 1.5E+02 0.0052 23.9 6.4 54 38-92 115-169 (242)
235 4h7y_A Dual specificity protei 26.7 1.4E+02 0.0049 22.8 5.8 56 37-92 94-155 (161)
236 3mcx_A SUSD superfamily protei 26.1 1.1E+02 0.0038 25.4 5.6 37 29-66 195-231 (477)
237 3myv_A SUSD superfamily protei 25.9 98 0.0034 25.7 5.1 36 29-65 183-218 (454)
238 2rg8_A Programmed cell death p 25.7 58 0.002 24.1 3.4 46 47-93 20-65 (165)
239 3kez_A Putative sugar binding 25.3 94 0.0032 25.9 5.0 36 29-65 189-224 (461)
240 2ff4_A Probable regulatory pro 24.4 1.7E+02 0.0059 23.7 6.3 75 40-115 174-258 (388)
241 2rpa_A Katanin P60 ATPase-cont 23.3 68 0.0023 21.6 3.0 25 41-65 16-40 (78)
242 2wvi_A Mitotic checkpoint seri 22.7 1.6E+02 0.0053 22.2 5.3 52 37-88 96-154 (164)
243 3txn_A 26S proteasome regulato 22.1 91 0.0031 26.3 4.2 34 34-67 136-169 (394)
244 1rw2_A ATP-dependent DNA helic 20.8 1.2E+02 0.0041 22.5 4.3 89 4-97 25-125 (152)
245 4a1g_A Mitotic checkpoint seri 20.1 95 0.0032 23.1 3.5 40 37-79 101-140 (152)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.90 E-value=6.9e-05 Score=61.09 Aligned_cols=95 Identities=33% Similarity=0.628 Sum_probs=82.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHhcCCCCc----hhHH
Q 032443 28 GEDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLSSLEFGF----EDGW 103 (140)
Q Consensus 28 ~~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~sL~f~~----e~~~ 103 (140)
..+.|+...+..++.+|.+|..+++.+.|..+|+++++.+|.+.+++..|...++.+..++++++..+.|.. ...+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 345567778889999999999999999999999999999999999999999999999999999999998863 4567
Q ss_pred HHHHHHHhhhccCCCcchh
Q 032443 104 LSSFYSCLIKKCRRYPFSG 122 (140)
Q Consensus 104 lk~lY~srL~Ky~~~~~~~ 122 (140)
...+|...+.-|.....++
T Consensus 271 ~~~~~~~~~~~~~~~g~~~ 289 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELR 289 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHH
T ss_pred HHHHHHHHHHHHcCcchHH
Confidence 7888888877776654433
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.60 E-value=0.00013 Score=51.05 Aligned_cols=44 Identities=27% Similarity=0.223 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
+++++-.|.+|..+|++++|..+|.+||++||.+.+|+..|-.-
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 48 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKT 48 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67788889999999999999999999999999999999887554
No 3
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.49 E-value=0.00024 Score=48.98 Aligned_cols=42 Identities=12% Similarity=-0.065 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
+...+.+|.||..+++++.|..+|..||.+||.+.+|+-.|-
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 345556677777777777777777777777777777766553
No 4
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.13 E-value=0.0011 Score=45.69 Aligned_cols=41 Identities=20% Similarity=0.116 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
-...-+|.+|-..++++.|.++|.+||.+||...+++..+-
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 54 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRA 54 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHh
Confidence 34456777777777777777777777777777777776553
No 5
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.06 E-value=0.0013 Score=46.12 Aligned_cols=40 Identities=18% Similarity=-0.007 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
.|..|++|..++++++|.++|.+||.+||.+.+|+..|-.
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGL 73 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4445666666666666666666666666666666655543
No 6
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.99 E-value=0.0014 Score=46.07 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+...+.+|.+|..++++++|..+|+.||.+||...+++..|-.
T Consensus 65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 107 (150)
T 4ga2_A 65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE 107 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456778999999999999999999999999999999987753
No 7
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.95 E-value=0.002 Score=40.77 Aligned_cols=36 Identities=31% Similarity=0.402 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF 74 (140)
..+.+|.+|..+++++.|..+|..|+.+||.+.+++
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 567779999999999999999999999999888876
No 8
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.85 E-value=0.0036 Score=38.31 Aligned_cols=43 Identities=28% Similarity=0.310 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+..++..|.+|..++++++|..+|.+|+..+|...+++..|-.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 51 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 51 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4456666788888888888888888888888777777665543
No 9
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0031 Score=41.58 Aligned_cols=43 Identities=21% Similarity=-0.011 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+...+.+|.+|..+++++.|..+|..|+.+||.+.+++-.|-.
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3556777888888888888888888888888888888766554
No 10
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.75 E-value=0.0043 Score=45.37 Aligned_cols=45 Identities=31% Similarity=0.346 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+.+.+++-+|.+|..++++++|..+|.+||.+||.+.+++-.|-.
T Consensus 52 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 96 (208)
T 3urz_A 52 ISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96 (208)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 345555556777777777777777777777777777777665543
No 11
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.75 E-value=0.0052 Score=37.53 Aligned_cols=41 Identities=29% Similarity=0.333 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
...+.+|.+|..++++++|..+|.+|+.++|...++...|-
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45677899999999999999999999999999998877654
No 12
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.74 E-value=0.0035 Score=43.55 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
..+.+|.+|..++++++|.++|++|+++||.+.+++..|-
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 109 AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 4566799999999999999999999999999988887664
No 13
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.72 E-value=0.0039 Score=43.16 Aligned_cols=66 Identities=11% Similarity=0.015 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC--HHHHHH-HHhcCCCCchh
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT--CEQETS-LLSSLEFGFED 101 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt--~~EE~e-Ll~sL~f~~e~ 101 (140)
.+.+++-+|.||..+++++.|..+|..||.+||.+..|+-.+-.-++-. .++-.. +-..|...|.+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 5667788899999999999999999999999999999987765544332 222222 33456666654
No 14
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.72 E-value=0.0034 Score=43.46 Aligned_cols=40 Identities=20% Similarity=0.037 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
...+.+|.+|..+++++.|..+|..||.+||..-++....
T Consensus 98 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 137 (162)
T 3rkv_A 98 KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE 137 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3467889999999999999999999999999998665443
No 15
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0047 Score=38.98 Aligned_cols=44 Identities=16% Similarity=-0.006 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
+..++.+|.+|..++++++|..+|.+|+.++|.+.+++..|-.-
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 47 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMA 47 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44567779999999999999999999999999998888766543
No 16
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.69 E-value=0.0043 Score=42.14 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
+.+|.++...++++.|..+|+.||..||.+.+++-.|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 57 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL 57 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4455555556666666666666666666665555444
No 17
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.67 E-value=0.0038 Score=40.84 Aligned_cols=43 Identities=12% Similarity=0.025 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
...+..|.+|..+++++.|..+|..|+.+||...+++..|-.-
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 50 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKL 50 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4566779999999999999999999999999999988776543
No 18
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.65 E-value=0.0045 Score=42.89 Aligned_cols=45 Identities=24% Similarity=0.127 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
+...+.+|.+|..+++++.|..+|..||.+||.+.+++..|-.-+
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345667788888888888888888888888888888877665443
No 19
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0062 Score=38.41 Aligned_cols=34 Identities=15% Similarity=0.018 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
+...+.+|.+|..+++++.|..+|..||.++|..
T Consensus 38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3456778999999999999999999999999998
No 20
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.49 E-value=0.0076 Score=39.57 Aligned_cols=40 Identities=20% Similarity=-0.017 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
..+.+|.+|..+++++.|..+|..|+.++|.+.+++..|-
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 45 YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4555566666666666666666666666666666655544
No 21
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.44 E-value=0.01 Score=36.74 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPL--CYEALECLIE 79 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~--CyEAFe~Lv~ 79 (140)
.++.+|.+|..++++++|..+|.+|+..+|. ..+++..|-.
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455677777777777777777777777777 6666655543
No 22
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0094 Score=39.21 Aligned_cols=47 Identities=17% Similarity=0.078 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
.|...+.+|.+|...++++.|..+|.+|+.++|.+.+++..+-.-++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 49 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA 49 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45567889999999999999999999999999999999877765443
No 23
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.42 E-value=0.0098 Score=38.98 Aligned_cols=45 Identities=18% Similarity=-0.033 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
.+..++.+|.+|..++++++|..+|..|+.++|...+++..+-.-
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 367778889999999999999999999999999998887665443
No 24
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.39 E-value=0.0096 Score=38.81 Aligned_cols=42 Identities=26% Similarity=0.227 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
...+..|.+|..+++++.|..+|+.|+.++|...+++..|-.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 61 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 456777999999999999999999999999999998876643
No 25
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.33 E-value=0.014 Score=36.30 Aligned_cols=66 Identities=12% Similarity=0.019 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC--CHHHHHHHH-hcCCCCchhH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML--TCEQETSLL-SSLEFGFEDG 102 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL--t~~EE~eLl-~sL~f~~e~~ 102 (140)
....+.+|.+|..+++.+.|..+|.+|+..+|...+++..+..-.+- ..++-.+.+ ..+...+...
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 34567779999999999999999999999999998887766544332 233333333 3566665443
No 26
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.32 E-value=0.014 Score=36.86 Aligned_cols=45 Identities=29% Similarity=0.200 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
+..++.+|.+|..+++++.|..+|..|+..+|...+++..|-.-+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 345677799999999999999999999999999888877665443
No 27
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.30 E-value=0.011 Score=38.95 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
.+...+..|.+|..+++++.|..+|.+|+.++|...+++..|-.
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34556777999999999999999999999999999998876654
No 28
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.27 E-value=0.0088 Score=38.34 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
+...+.+|.+|..++++++|..+|.+|+..+|...+++..|-.-.
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 445677799999999999999999999999999988887765543
No 29
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.26 E-value=0.0098 Score=43.14 Aligned_cols=43 Identities=16% Similarity=0.063 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+..++..|.+|..++++++|.++|.+|+.+||.+-+|.+.|..
T Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 221 IEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence 3456667999999999999999999999999999999988754
No 30
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.21 E-value=0.01 Score=42.39 Aligned_cols=46 Identities=13% Similarity=-0.043 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
.+.+.+.+|.+|..+++++.|..+|..|+.++|.+..++-.+-.-+
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 132 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN 132 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4567788899999999999999999999999999998887765433
No 31
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.19 E-value=0.01 Score=40.52 Aligned_cols=37 Identities=19% Similarity=-0.015 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
+.+|.+|..+++++.|..+|..|+.+||...+++-.|
T Consensus 56 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 56 LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3445555555555555555555555555555554433
No 32
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.19 E-value=0.0082 Score=43.39 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
..+-+|.+|..+++++.|..+|..|+.+||.+.+++..|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~l 76 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL 76 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345557777777777777777777777777777766554
No 33
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.18 E-value=0.013 Score=40.48 Aligned_cols=47 Identities=19% Similarity=-0.007 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
.+...+.+|.+|...+++++|..+|.+||.++|.+.+++..|-.-++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 56 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS 56 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH
Confidence 56678888999999999999999999999999999999887765443
No 34
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.17 E-value=0.015 Score=38.13 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
+...+..|.+|..+++++.|..+|..|+..+|.+.+++..|-.-.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 54 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL 54 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999887765444
No 35
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.07 E-value=0.017 Score=39.30 Aligned_cols=42 Identities=24% Similarity=0.159 Sum_probs=33.6
Q ss_pred HHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 36 SSAICF-LRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 36 ~ssmc~-LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
++++.+ -.|.+|-..+++++|.++|.+||.+||...+++.-|
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nl 48 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNK 48 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhH
Confidence 344443 359999999999999999999999999998887654
No 36
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.06 E-value=0.012 Score=41.27 Aligned_cols=37 Identities=16% Similarity=-0.000 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
+.+|.+|..+++++.|..+|..|+.+||...+++-.|
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 3446666666666666666666666666655555444
No 37
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.05 E-value=0.013 Score=42.71 Aligned_cols=47 Identities=15% Similarity=-0.061 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT 84 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt 84 (140)
...+.+|.+|..+++.+.|..+|.+||.+||.+.+|+..|-.-....
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44667799999999999999999999999999999998886654433
No 38
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.04 E-value=0.013 Score=39.66 Aligned_cols=44 Identities=16% Similarity=0.006 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
...+.+|.+|..+++.+.|..+|+.|+.+||...+++..|-.-.
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 52 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34677899999999999999999999999999999987775443
No 39
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.94 E-value=0.023 Score=35.31 Aligned_cols=45 Identities=20% Similarity=0.074 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
+...+..|.++...++++.|..+|..|+..+|...+++..+-.-+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 48 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAY 48 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 445667799999999999999999999999999888877665443
No 40
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.94 E-value=0.021 Score=40.64 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
...+.+|.+|..+++++.|..+|++|+.++|...++...|..
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 346778999999999999999999999999999998877753
No 41
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.80 E-value=0.03 Score=35.28 Aligned_cols=47 Identities=15% Similarity=0.017 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
.+...+..|.+|...++++.|..+|..|+..+|...+++..+..-++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 57 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS 57 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45567778999999999999999999999999999888877665543
No 42
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.79 E-value=0.024 Score=41.96 Aligned_cols=67 Identities=10% Similarity=-0.030 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCH--HHHHHH-HhcCCCCchh
Q 032443 35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTC--EQETSL-LSSLEFGFED 101 (140)
Q Consensus 35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~--~EE~eL-l~sL~f~~e~ 101 (140)
+.....+.+|.+|..+++.++|..+|.+|+..+|.+.+++..+-.-.+-.. ++-.+. -..+...|+.
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 344556667999999999999999999999999988888877665544322 222222 2355555544
No 43
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.78 E-value=0.021 Score=36.52 Aligned_cols=49 Identities=16% Similarity=0.055 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT 84 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt 84 (140)
...-++.+|.+|...++++.|..+|.+|+..+|.+.+++..|-.-.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 63 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 63 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 3444566699999999999999999999999999999998887765544
No 44
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.76 E-value=0.027 Score=37.53 Aligned_cols=43 Identities=16% Similarity=-0.151 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+...+.+|.+|..+++++.|..+|.+|+.++|...+++-.+-.
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3445666777777777777777777777777777777655543
No 45
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.75 E-value=0.033 Score=34.78 Aligned_cols=44 Identities=27% Similarity=0.276 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
..++..|.+|..+++++.|..+|.+++..+|...+++..|..-+
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45666799999999999999999999999998888876665433
No 46
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.75 E-value=0.025 Score=39.85 Aligned_cols=44 Identities=27% Similarity=0.163 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
+..++.+|.+|..++++++|..+|.+|+.++|.+.+++..|-.-
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 45778889999999999999999999999999999888765543
No 47
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.72 E-value=0.038 Score=36.09 Aligned_cols=45 Identities=16% Similarity=-0.056 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLC---YEALECLIEN 80 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C---yEAFe~Lv~~ 80 (140)
.+...+.+|.+|...++++.|..+|.+|+..+|.. ..++..|-.-
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~ 74 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAAC 74 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 34567788999999999999999999999999998 6666655543
No 48
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.70 E-value=0.023 Score=35.68 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYE-ALECLIE 79 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE-AFe~Lv~ 79 (140)
+-+|.+|..+++++.|..+|..|+..+|.+.+ ++..|-.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 43 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGN 43 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 55799999999999999999999999999998 8766543
No 49
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.68 E-value=0.038 Score=34.90 Aligned_cols=44 Identities=14% Similarity=-0.067 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
+..++..|.+|...+++++|..+|..|+..+|.+..++..|-.-
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 47 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAV 47 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 44566678999999999999999999999998888877665543
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.67 E-value=0.025 Score=40.64 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
..+.+|.+|..++++++|..+|..|+..+|...+++..|-.
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34446777777777777777777777777777666665544
No 51
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.67 E-value=0.022 Score=45.28 Aligned_cols=45 Identities=18% Similarity=-0.071 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
+..++.+|.||..++++++|..+|..||.+||.+..|+-.|-.-+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 240 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH 240 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 566677788888888888888888888888888888776664443
No 52
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.67 E-value=0.039 Score=35.69 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLC---YEALECLIEN 80 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C---yEAFe~Lv~~ 80 (140)
+...+..|.+|..+++++.|..+|..++..+|.. .+++-.|-.-
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3456667999999999999999999999999988 7776655443
No 53
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.66 E-value=0.032 Score=37.16 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
...+..|.+|...+++++|..+|..|+..+|.+.+++..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 53 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR 53 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3344445555555555555555555555555555544433
No 54
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.64 E-value=0.015 Score=41.89 Aligned_cols=47 Identities=21% Similarity=0.147 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHccC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPL--CYEALECLIENHM 82 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~--CyEAFe~Lv~~~l 82 (140)
.+...+.+|.+|..++++++|..+|.+|+.++|. +.+++..|-.-++
T Consensus 116 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 116 YAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999 8899887765554
No 55
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.63 E-value=0.047 Score=36.44 Aligned_cols=45 Identities=22% Similarity=0.085 Sum_probs=35.8
Q ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 032443 31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALEC 76 (140)
Q Consensus 31 ~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~ 76 (140)
.|+...... ..-|.||-.+|++++|...|++||+++|..-.+..-
T Consensus 41 ~~~~~~~i~-~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 41 STIDKVSVL-DYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp CSSCHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcccHHHHH-HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 355544444 444999999999999999999999999998777443
No 56
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.61 E-value=0.031 Score=40.30 Aligned_cols=43 Identities=14% Similarity=-0.010 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
...+.+|.+|..+++++.|..+|..|+.+||...+++-.|-.-
T Consensus 71 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 71 DYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3456679999999999999999999999999999998776543
No 57
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.60 E-value=0.036 Score=37.70 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
...+..++-+|.+|.+++++++|.++|..||..+|. .+....|
T Consensus 80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 334556677899999999999999999999998874 4444433
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.58 E-value=0.013 Score=48.52 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHH
Q 032443 39 ICFLRGKAYEALGN-CAQARLWYKAAIIADPLCYEAL 74 (140)
Q Consensus 39 mc~LRGk~yeal~N-~~~A~~~YkeAL~~Dv~CyEAF 74 (140)
..+.||.+|..+++ ++.|..+|.+||.+||++++++
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 33444555555553 4555555554444444444444
No 59
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.56 E-value=0.024 Score=39.23 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
..++..|.+|..+++++.|..+|..|+.++|.+.+++..|-.-
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 87 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV 87 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4678889999999999999999999999999999988776544
No 60
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.55 E-value=0.055 Score=33.70 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
+..++..|.+|...++++.|..+|.+|+..+|...+++..|..-.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 54 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 54 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 4567778999999999999999999999999999988877765443
No 61
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.54 E-value=0.044 Score=35.43 Aligned_cols=29 Identities=10% Similarity=-0.074 Sum_probs=15.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443 43 RGKAYEALGNCAQARLWYKAAIIADPLCY 71 (140)
Q Consensus 43 RGk~yeal~N~~~A~~~YkeAL~~Dv~Cy 71 (140)
+|.++...++++.|...|..++..+|...
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 36 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGV 36 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSST
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCc
Confidence 35555555555555555555555555544
No 62
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.53 E-value=0.013 Score=36.32 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
.+.+|.+|..++++++|..+|..|+..+|...+++..+-.-.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 50 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL 50 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 456799999999999999999999999999999887665443
No 63
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.47 E-value=0.033 Score=44.25 Aligned_cols=43 Identities=21% Similarity=0.040 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
...+.+|.+|..+++++.|..+|++||.++|.+.++...|-.-
T Consensus 231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467789999999999999999999999999999988777543
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.41 E-value=0.031 Score=39.50 Aligned_cols=40 Identities=20% Similarity=0.057 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
..+..|.+|..+++.+.|..+|.+++..+|...+++..|.
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 200 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAG 200 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3444466666666666666666666666665555554443
No 65
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.37 E-value=0.037 Score=40.52 Aligned_cols=43 Identities=16% Similarity=0.065 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
...+.+|.+|..+++++.|..+|+.|+.+||...+++..|-.-
T Consensus 40 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 40 EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3456679999999999999999999999999988887766543
No 66
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.34 E-value=0.061 Score=33.91 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
+...+..|.+|..+++++.|..+|..|+..++ ..++...|
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l 118 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 55677889999999999999999999999998 45555544
No 67
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.29 E-value=0.043 Score=39.47 Aligned_cols=44 Identities=27% Similarity=0.306 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
.+...+.+|.+|..++++++|..+|.+|+.++|...+++..|-.
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 85 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI 85 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 35556667888888888888888888888888887777766554
No 68
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.24 E-value=0.06 Score=41.84 Aligned_cols=72 Identities=15% Similarity=0.020 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC-CCH-HHH-HHHHh-cCCCCchhHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM-LTC-EQE-TSLLS-SLEFGFEDGWLSSFYS 109 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l-Lt~-~EE-~eLl~-sL~f~~e~~~lk~lY~ 109 (140)
.+.+-+|.+|..+++++.|..+|.+||..||...+++..|..-.. +.. .|+ .++++ -+...|+..+++.++.
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~ 276 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA 276 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 455668999999999999999999999999999999987763222 222 232 35554 4556777777777654
No 69
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.16 E-value=0.022 Score=47.35 Aligned_cols=47 Identities=17% Similarity=-0.000 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
.+..++-+|.||..++++++|..+|.+||.+||.+..|+-.+-.-++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~ 362 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL 362 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 36677778999999999999999999999999999888876654433
No 70
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.11 E-value=0.059 Score=37.62 Aligned_cols=43 Identities=12% Similarity=-0.043 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+...+.+|.++..+++++.|..+|..|+.+||.+.+++..|-.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 63 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 3345667999999999999999999999999999999877644
No 71
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.08 E-value=0.066 Score=36.33 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
+...+-+|.++...++++.|..+|..|+..||...+++..|-.-+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 62 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACR 62 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 344566799999999999999999999999999999988765433
No 72
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.04 E-value=0.041 Score=45.43 Aligned_cols=63 Identities=10% Similarity=-0.043 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc--CC-CHHHHHHHHh-cCCCCc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH--ML-TCEQETSLLS-SLEFGF 99 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~--lL-t~~EE~eLl~-sL~f~~ 99 (140)
+...+.+|.+|..+++.++|..+|.+||.++|.+++|+..+-.-. += ..++....++ .|...+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC
Confidence 445666799999999999999999999999999999976543322 22 1455555553 444443
No 73
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.99 E-value=0.044 Score=40.11 Aligned_cols=42 Identities=26% Similarity=0.203 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
..+.+|.++..+++++.|..+|..||..||.+.+++..|-.-
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 48 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLART 48 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456789999999999999999999999999999999866543
No 74
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.95 E-value=0.048 Score=39.45 Aligned_cols=46 Identities=22% Similarity=0.059 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
+...+.+|.+|..++++++|..+|..|+..+|...+++..|-.-++
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 4446677888888888888888888888888888888777665443
No 75
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.89 E-value=0.055 Score=44.95 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
...|.||++|..+++++.|..+|+.||.+||.+.+|...|-.-
T Consensus 352 ~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3478889999999999999999999999999999988777643
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=94.88 E-value=0.029 Score=46.68 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNC-AQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~-~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+..++.+|++|..++++ ++|..+|.+||++||.+.+++..|-.
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 145 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGE 145 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 45677778888888887 88888888888888877777766543
No 77
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.79 E-value=0.055 Score=44.14 Aligned_cols=46 Identities=15% Similarity=0.002 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
.+..++-+|.+|..+++.++|..+|.+||.+||...+|+-.|-.-+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 317 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW 317 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4667778899999999999999999999999999999987764433
No 78
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.79 E-value=0.041 Score=36.72 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
+.+.-||--|+.+-..+++.+|+.||.+|++.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~ 34 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQ 34 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHh
Confidence 45667999999999999999999999999986
No 79
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.079 Score=37.43 Aligned_cols=46 Identities=17% Similarity=0.085 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
.+...+.+|.+|..+++++.|..+|.+|+..+|...+++..|..-.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 183 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL 183 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 3445666678888888888888888888888877777776665443
No 80
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.71 E-value=0.09 Score=32.81 Aligned_cols=40 Identities=30% Similarity=0.353 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
++..|.+|...++.+.|..+|.+++..+|....++..|..
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 4445777777777777777777777777776666655543
No 81
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.62 E-value=0.057 Score=41.56 Aligned_cols=40 Identities=20% Similarity=0.021 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
...+.+|.+|..+++++.|...|.+|+.++|.+..++..|
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 39 VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4456667777777777777777777777777777666554
No 82
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.62 E-value=0.039 Score=41.90 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 40 CFLRGKAYEALG-----------NCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 40 c~LRGk~yeal~-----------N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
.|-.|.+|..++ ++++|..||+.||.+||.+.++-..|
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455699998874 99999999999999999986655443
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.58 E-value=0.12 Score=34.29 Aligned_cols=42 Identities=14% Similarity=0.087 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
..++..|.+|..++++++|..+|.+++..+|...+++..+..
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 118 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV 118 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence 345556788888888888888888888888877777665544
No 84
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=94.56 E-value=0.078 Score=37.46 Aligned_cols=45 Identities=20% Similarity=0.006 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
...+.+|.+|..+++++.|..+|.+|+..+|.+.+++..|-.-.+
T Consensus 174 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 174 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 456677999999999999999999999999999988877765443
No 85
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.51 E-value=0.072 Score=40.37 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALEC 76 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~ 76 (140)
++++| |..|-+++|.++|+.++..+|+++|.|-+|-..
T Consensus 73 ~lY~L-Av~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 73 YVFYL-AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHH-HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHH-HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 45555 999999999999999999999999999988543
No 86
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=94.51 E-value=0.074 Score=38.21 Aligned_cols=43 Identities=16% Similarity=-0.002 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
...+..|.+|..+++++.|..+|.+|+.++|.+.+++..|-.-
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 120 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHH
Confidence 3455668888888888888888888888888887777666543
No 87
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.41 E-value=0.063 Score=42.72 Aligned_cols=64 Identities=8% Similarity=-0.046 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCH--HHH-HHHHhcCCCCchh
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTC--EQE-TSLLSSLEFGFED 101 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~--~EE-~eLl~sL~f~~e~ 101 (140)
..++.+|.||..+++++.|..+|..||.+||.+..|+-.|-.-++... ++- ..|-..|...+.+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 366778999999999999999999999999999999887765544432 222 2344566666544
No 88
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.40 E-value=0.12 Score=35.68 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT 84 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt 84 (140)
..+..|.+|..+++.+.|..+|..|+..+|...+++..|..-.+-.
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 4455677777777777777777777777777777776665544433
No 89
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.40 E-value=0.033 Score=36.19 Aligned_cols=31 Identities=26% Similarity=0.232 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
..+.+|.+|..+++++.|..+|++|+.+++.
T Consensus 43 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 43 TYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 5677799999999999999999999998654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.38 E-value=0.15 Score=31.74 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
.++..|.+|..+++.++|..+|.+++..+|...+++..|..-
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 112 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 112 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 456679999999999999999999999999988877666543
No 91
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.35 E-value=0.095 Score=40.41 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
..++.+|.+|..++++++|..+|.+|+.++|...+++..|.
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 108 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 35677799999999999999999999999999888776554
No 92
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.30 E-value=0.041 Score=40.45 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC--CHHHHHHHH-hcCCCCchhHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML--TCEQETSLL-SSLEFGFEDGW 103 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL--t~~EE~eLl-~sL~f~~e~~~ 103 (140)
+..++..|.+|..+++++.|..+|.+|+.++|...+++..|-.-..- ..++-.+.+ ..+...|++..
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 44666779999999999999999999999999999998877654432 233444444 46777765543
No 93
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=94.24 E-value=0.086 Score=41.90 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
...+.+|.+|..++++++|..+|.+|+.+||.+.+++..|..-+
T Consensus 60 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 60 VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 44667799999999999999999999999999888877665443
No 94
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.19 E-value=0.027 Score=44.83 Aligned_cols=41 Identities=29% Similarity=0.186 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
...+.+|++|..+++++.|..+|+.||+++|.+.++...|.
T Consensus 265 ~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 34677899999999999999999999999999988876654
No 95
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.11 Score=40.75 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccC
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHM 82 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~l 82 (140)
+...+.+|.+|..++++++|..+|.+|+..+|.+.+++..|..-++
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 4456778999999999999999999999999999998877665443
No 96
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=94.07 E-value=0.095 Score=43.53 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+...+.+|.+|..++++++|..+|.+|+.+||...++...|-.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4556778999999999999999999999999999988766543
No 97
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.04 E-value=0.13 Score=39.11 Aligned_cols=40 Identities=30% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
.+.+|.+|..+++++.|..+|.+|+..+|...+++..|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 107 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGI 107 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 4444555555555555555555555555555555554443
No 98
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.02 E-value=0.1 Score=42.56 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+...+.+|.+|..++++++|..+|++|++++|..-++...|-.
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456788999999999999999999999999999888776653
No 99
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.00 E-value=0.16 Score=35.65 Aligned_cols=34 Identities=9% Similarity=-0.062 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
+...+.+|.+|..+++.++|..+|..|+.++|..
T Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 121 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 4566778999999999999999999999999965
No 100
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.96 E-value=0.19 Score=34.65 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
+...+..|.+|..+++.++|..+|.+++..+|...+++..|..-
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 44566779999999999999999999999999888877766543
No 101
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.94 E-value=0.2 Score=33.20 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
+..++..|.+|..++++++|..+|.+++..+|...+++..+..-
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45567779999999999999999999999999998887766543
No 102
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.89 E-value=0.12 Score=40.14 Aligned_cols=41 Identities=20% Similarity=-0.051 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
...+.+|.+|..+++++.|..+|++|+.++|...++...|-
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 34555677777777777777777777777777776666654
No 103
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.89 E-value=0.14 Score=34.33 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 38 AICFLRGKAYEALGN---CAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 38 smc~LRGk~yeal~N---~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
.+.+.+|.++-..++ ..+|...+++||.+||.|..|.-.|=
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg 50 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIA 50 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 455666777776666 58999999999999999998876663
No 104
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.87 E-value=0.16 Score=38.28 Aligned_cols=41 Identities=29% Similarity=0.283 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
..+.+|.+|..+++++.|..+|.+|+..+|...+++..|..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 106 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGT 106 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455666666666666666666666666666666555443
No 105
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.69 E-value=0.11 Score=46.82 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
+-+|.+|..+++++.|..+|++||++||.+.+|+..|
T Consensus 47 ~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 47 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3346666666666666666666666666666665544
No 106
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.67 E-value=0.15 Score=37.59 Aligned_cols=43 Identities=14% Similarity=-0.058 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
...+.+|.+|..++++++|..+|..|+..+|...+++..|..-
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 38 IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3566678888888888888888888888888887777666543
No 107
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=93.58 E-value=0.17 Score=38.27 Aligned_cols=39 Identities=10% Similarity=-0.158 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCcHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIA-------DPLCYEAL 74 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~-------Dv~CyEAF 74 (140)
.+...+=||.++..+++++.|..||..||.+ ||....|+
T Consensus 56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~ 101 (159)
T 2hr2_A 56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLW 101 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHH
Confidence 4557888999999999999999999999999 99999998
No 108
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=93.42 E-value=0.18 Score=34.72 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=36.2
Q ss_pred HHHHHHHHH-HHHcCCH--HHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 38 AICFLRGKA-YEALGNC--AQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 38 smc~LRGk~-yeal~N~--~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
...+..|.+ |..+++. +.|..+|..|+..+|.+.+++..|-.-
T Consensus 79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 124 (177)
T 2e2e_A 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASD 124 (177)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 356677999 8899998 999999999999999999988776543
No 109
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.40 E-value=0.18 Score=37.90 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
+...+..|.+|..+++++.|..+|.+|+.++|.+.+++..|..-
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 260 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 260 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 34455567777777777777777777777777777766655443
No 110
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=93.40 E-value=0.14 Score=38.71 Aligned_cols=35 Identities=9% Similarity=0.037 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
.|...+-+|.++..+++++.|..+|..||++||.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~ 44 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM 44 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Confidence 56778889999999999999999999999999993
No 111
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.35 E-value=0.25 Score=34.71 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
.+.+|.+|..++++++|..+|.+|+..+|...+++..|
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 34445555555555555555555555555555554443
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.20 E-value=0.21 Score=34.87 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLC--YEALECL 77 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C--yEAFe~L 77 (140)
...+..|.+|..+++++.|..+|.++|+.+|.. .++...|
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 345556888888888888888888888888764 3355444
No 113
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.18 E-value=0.095 Score=41.66 Aligned_cols=46 Identities=20% Similarity=0.080 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
.+..++.+|.+|...+++++|..+|.+|+..||.+.+++..|-.-+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 69 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY 69 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 5667888999999999999999999999999999999987766543
No 114
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=93.17 E-value=0.25 Score=36.06 Aligned_cols=39 Identities=15% Similarity=-0.029 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
.+.+|.+|..+++++.|..+|..|+..+|...+++..|.
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 96 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 445566677777777777777777777666666655544
No 115
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.16 E-value=0.11 Score=45.51 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE 75 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe 75 (140)
..+.+|.+|..+++++.|..+|.+|++.||...+|+.
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 471 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVW 471 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHH
Confidence 3444455555555555555555555555555555444
No 116
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=93.16 E-value=0.2 Score=38.07 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
..+..|.+|..++++++|..+|.+|+.++|...+++..|..
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 255 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGA 255 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455666666666666666666666666666666655543
No 117
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.16 E-value=0.15 Score=39.27 Aligned_cols=41 Identities=20% Similarity=0.051 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
.+..|.+|..+++.+.|..+|.+|+.++|.+.+++..|..-
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34457888888888888888888888888877777766543
No 118
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=93.15 E-value=0.13 Score=37.69 Aligned_cols=42 Identities=14% Similarity=0.011 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
...+..|.+|..++++++|..+|.+|+.++|...++...|..
T Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 271 STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence 346667999999999999999999999999999999888765
No 119
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=93.12 E-value=0.15 Score=36.41 Aligned_cols=42 Identities=26% Similarity=0.291 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
+..++.+|.+|...+++++|..+|.+|+..+|...+++..|.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 78 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA 78 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 455566666666666666666666666666666666555543
No 120
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=93.12 E-value=0.28 Score=35.02 Aligned_cols=45 Identities=11% Similarity=-0.016 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
+...+..|.+|..+++.++|..+|.+|+..+|...+++..|..-.
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 445566788888889999999999999988888888877665443
No 121
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.11 E-value=0.15 Score=46.04 Aligned_cols=40 Identities=20% Similarity=0.094 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
.+-+|.+|..+++.++|..+|++||++||...+|+..|..
T Consensus 114 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence 4455777888888888888888888888887777766653
No 122
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.10 E-value=0.14 Score=33.52 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEA 73 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEA 73 (140)
+...+..|.+|..+++++.|..+|++||..+|..-+.
T Consensus 61 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 61 QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 3455667999999999999999999999999887654
No 123
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.09 E-value=0.084 Score=34.19 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
..+..|.+|..+++.+.|..+|..|+.++|..
T Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 55 AWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 45667999999999999999999999998754
No 124
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=92.98 E-value=0.2 Score=40.63 Aligned_cols=44 Identities=14% Similarity=-0.012 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
+...+..|.+|..+++.+.|..+|++++..+|...+++..|..-
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34455557777777777777777777777777777777666543
No 125
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=92.97 E-value=0.097 Score=39.66 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 40 CFLRGKAYEALGNC----------AQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 40 c~LRGk~yeal~N~----------~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
.+..|.++..++++ +.|+.+|.+||++||...+|+-.|=.
T Consensus 39 ~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 39 LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 44468888888775 59999999999999999999876643
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=92.88 E-value=0.23 Score=38.06 Aligned_cols=45 Identities=16% Similarity=-0.007 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
+...+.+|.+|...++++.|..+|.+|+..+|...+++..|-.-+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 48 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCY 48 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 445677899999999999999999999999999999987665443
No 127
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.77 E-value=0.22 Score=39.05 Aligned_cols=39 Identities=18% Similarity=0.046 Sum_probs=21.2
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 40 CFLRGKAYEA---LGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 40 c~LRGk~yea---l~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
.+.+|.+|.. +++++.|..+|..|+..+|.+.+++..|.
T Consensus 415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 456 (514)
T 2gw1_A 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA 456 (514)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3444555555 55555555555555555555555544443
No 128
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=92.77 E-value=0.21 Score=41.96 Aligned_cols=42 Identities=17% Similarity=-0.155 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
+...+.+|.+|..+++.+.|..+|.+|+++||...+++..|-
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 81 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 81 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 445666788888888888888888888888888777766553
No 129
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=92.68 E-value=0.33 Score=35.45 Aligned_cols=44 Identities=16% Similarity=0.018 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
...+..|.+|..+++++.|..+|.+|+..+|.+.+++..+..-.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL 216 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 44566688888888888888888888888888888776665433
No 130
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=92.63 E-value=0.29 Score=37.96 Aligned_cols=42 Identities=14% Similarity=-0.044 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
...+.+|.+|..+++.+.|..+|.+|+..+|.+.+++..|..
T Consensus 61 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 344555667777777777777777777777666666655543
No 131
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.17 E-value=0.28 Score=40.89 Aligned_cols=39 Identities=23% Similarity=0.130 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+..|.+|..+++.+.|.++|.+|++++|...+++..|..
T Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 334555555555555555555555555555555544443
No 132
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=91.70 E-value=0.2 Score=42.05 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
...+.+|.+|..++++++|..+|++||+++|...++...|-
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 115 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44667799999999999999999999999999888776654
No 133
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=91.60 E-value=0.41 Score=35.12 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPL---CYEALECLIE 79 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~---CyEAFe~Lv~ 79 (140)
+.+|.+|..+++++.|..+|..++..+|. ..+|+-.|-.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~ 193 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMR 193 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 67799999999999999999999999998 4556655543
No 134
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=91.60 E-value=0.37 Score=36.80 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE-ALECLIE 79 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE-AFe~Lv~ 79 (140)
.+.+..|.+++.+++.++|...|..||+++|...+ ++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 142 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMK 142 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHH
Confidence 35667788999999999999999999999988876 6666543
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=91.50 E-value=0.22 Score=43.32 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHH--HHHccCCCH--HHHHHHHh
Q 032443 38 AICFLRGKAYEALGN----------CAQARLWYKAAIIADPLCYEALEC--LIENHMLTC--EQETSLLS 93 (140)
Q Consensus 38 smc~LRGk~yeal~N----------~~~A~~~YkeAL~~Dv~CyEAFe~--Lv~~~lLt~--~EE~eLl~ 93 (140)
...+-||.+..+++. ...|.++|..||+.||+||.|+.. .+=.+|-.+ ++|.++++
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~ 133 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 133 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 568889999999998 899999999999999999999863 333344433 66666664
No 136
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=91.31 E-value=0.35 Score=40.28 Aligned_cols=39 Identities=18% Similarity=-0.048 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
.+..|.+|..+++++.|..+|.+|+.++|...+++..|-
T Consensus 60 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 98 (568)
T 2vsy_A 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98 (568)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 344466666666666666666666666666655555443
No 137
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=91.31 E-value=0.1 Score=36.49 Aligned_cols=33 Identities=3% Similarity=-0.088 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE 72 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE 72 (140)
..+..|.+|..+++.+.|..+|+.|+..+| ..+
T Consensus 42 a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~ 74 (176)
T 2r5s_A 42 VKLAKADCLLETKQFELAQELLATIPLEYQ-DNS 74 (176)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence 345557777777777777777777777766 443
No 138
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=91.09 E-value=0.76 Score=33.07 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE 72 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE 72 (140)
+.-.+++|.++...++++.|..+|.+|+..+|...+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~ 40 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK 40 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHH
Confidence 444677899999999999999999999999998753
No 139
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=91.07 E-value=0.28 Score=41.94 Aligned_cols=48 Identities=13% Similarity=-0.012 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHcc
Q 032443 34 NISSAICFLRGKAYEALGNC---AQARLWYKAAIIADPLCYEALECLIENH 81 (140)
Q Consensus 34 kl~ssmc~LRGk~yeal~N~---~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~ 81 (140)
++.|--|||||+.|....+. .+|..+|.+|+.+||.+-.|+-.|--.+
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 243 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46788999999999887554 8999999999999999999988654444
No 140
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=90.92 E-value=0.41 Score=34.86 Aligned_cols=36 Identities=14% Similarity=-0.050 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEA 73 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEA 73 (140)
...+.+|.+|..++++++|..+|..+++.+|....+
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence 355667999999999999999999999999998754
No 141
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=90.90 E-value=0.53 Score=34.51 Aligned_cols=44 Identities=16% Similarity=-0.037 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPL---CYEALECLIEN 80 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~---CyEAFe~Lv~~ 80 (140)
+...+.+|.+|..+++++.|..+|..++..+|. ..+|+-.|-.-
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 556777899999999999999999999999774 44555444433
No 142
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=90.82 E-value=0.51 Score=37.08 Aligned_cols=40 Identities=15% Similarity=-0.120 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLI 78 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv 78 (140)
..+..|.+|..+++.++|..+|.+|+..+|...+++..|-
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 3455699999999999999999999999999998877664
No 143
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.78 E-value=0.21 Score=43.66 Aligned_cols=46 Identities=13% Similarity=-0.088 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCC
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHML 83 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lL 83 (140)
...+.+|.+|..+++.+.|..+|.+|+.+||...+|...+..-.+.
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 3467779999999999999999999999999999999888777655
No 144
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=90.65 E-value=0.44 Score=37.44 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 33 INISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 33 ikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
.+..+++|.+.|.+|..+|+.+.|.++|++|+.+
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~ 80 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEEL 80 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3345788999999999999999999999999987
No 145
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=90.39 E-value=0.67 Score=35.47 Aligned_cols=58 Identities=14% Similarity=0.008 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCC--HHHHHHHHhcC
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLT--CEQETSLLSSL 95 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt--~~EE~eLl~sL 95 (140)
...+..|..+...++++.|...|++||..||.+.+|.-.|-.-.+-. .++-..+++.+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34567899999999999999999999999999999988776543322 34444455443
No 146
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=90.08 E-value=0.32 Score=35.26 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
.+...+..|.+|..+++.++|..+|++|+.+++.
T Consensus 277 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 277 VTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3455666799999999999999999999998764
No 147
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.95 E-value=0.45 Score=33.70 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIA--------DPLCYEALECLIEN 80 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~--------Dv~CyEAFe~Lv~~ 80 (140)
.+..++..|.+|..++++++|..+|.+|+.+ +|....++..|-.-
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3455666799999999999999999999999 88777777666543
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=89.88 E-value=1.8 Score=35.18 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIAD--PLCY 71 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~D--v~Cy 71 (140)
.+.+++..|.+++.+|+++.|..||.+|+.-. |.|+
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~ 207 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA 207 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc
Confidence 46677888999999999999999999998655 6654
No 149
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=89.24 E-value=0.76 Score=29.38 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
..+..++..|.+|..+++.++|..+|.+|+.+
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666643
No 150
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.19 E-value=0.75 Score=33.83 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE 75 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe 75 (140)
.++|| +..|-+++++++|+.+....|+++|.|-.|-.
T Consensus 76 ~lY~L-Avg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 76 YVFYL-AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHH-HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHH-HHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 45666 99999999999999999999999999988754
No 151
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=89.11 E-value=0.81 Score=29.23 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADP 68 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv 68 (140)
.+..++..|.+|..+++++.|..+|.+|+.+.+
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 40 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 40 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 445555567777777777777777777766543
No 152
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=88.86 E-value=0.52 Score=38.26 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHH---HH----HccC---CCHHHHHHHHh
Q 032443 38 AICFLRGKAYEALG--NCAQARLWYKAAIIADPLCYEALEC---LI----ENHM---LTCEQETSLLS 93 (140)
Q Consensus 38 smc~LRGk~yeal~--N~~~A~~~YkeAL~~Dv~CyEAFe~---Lv----~~~l---Lt~~EE~eLl~ 93 (140)
+..+.||.+...++ +...|..++..+|..+|+||.|+.. ++ . ++ ...++|.++++
T Consensus 68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~-~l~~~~~~~~EL~~~~ 134 (306)
T 3dra_A 68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME-LNNNDFDPYREFDILE 134 (306)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH-HTTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH-hccccCCHHHHHHHHH
Confidence 34678899998888 8899999999999999999888743 12 2 22 45677777775
No 153
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=88.70 E-value=0.97 Score=34.55 Aligned_cols=40 Identities=8% Similarity=-0.039 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLC--YEALECLI 78 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C--yEAFe~Lv 78 (140)
..+..|.+|..+++++.|...|.++|+.||.. -+|...|.
T Consensus 221 ~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 221 LATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 34555888888888888888888888888877 56665554
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=88.63 E-value=0.78 Score=38.44 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHH---HHHccCC-CHHHHHHHHh-cCCCCc
Q 032443 38 AICFLRGKAYEALG-NCAQARLWYKAAIIADPLCYEALEC---LIENHML-TCEQETSLLS-SLEFGF 99 (140)
Q Consensus 38 smc~LRGk~yeal~-N~~~A~~~YkeAL~~Dv~CyEAFe~---Lv~~~lL-t~~EE~eLl~-sL~f~~ 99 (140)
...+-||.+...++ ..+.|..++..+|..+|+||.|+.. ++.+..- .+++|.++++ .|..++
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp 156 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP 156 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Confidence 34678999999999 5999999999999999999999854 2332212 5688888886 566654
No 155
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=88.51 E-value=1.1 Score=32.73 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=12.5
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 032443 43 RGKAYEA----LGNCAQARLWYKAAIIADP 68 (140)
Q Consensus 43 RGk~yea----l~N~~~A~~~YkeAL~~Dv 68 (140)
.|.+|.. .++.++|..||+.|+..++
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 3444444 4455555555554444443
No 156
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.26 E-value=0.59 Score=31.22 Aligned_cols=29 Identities=7% Similarity=-0.245 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
++.|.++...+++.+|+..|..+|..||.
T Consensus 47 ~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 47 SLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34499999999999999999999999998
No 157
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.17 E-value=0.42 Score=36.39 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEA 73 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEA 73 (140)
.++-.|.||..+++...|..+|.+|+.+||...++
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 44556999999999999999999999999987765
No 158
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=87.99 E-value=1 Score=31.81 Aligned_cols=47 Identities=19% Similarity=0.051 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHccC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIA--------DPLCYEALECLIENHM 82 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~--------Dv~CyEAFe~Lv~~~l 82 (140)
.+..++..|.+|..++++++|..+|.+|+.+ +|...+++..|-.-.+
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 138 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ 138 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 4556666799999999999999999999998 6777777766655443
No 159
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=87.80 E-value=1.4 Score=33.10 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE 72 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE 72 (140)
+...+++|.++..+++++.|..+|.+|+.++|...+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~ 44 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK 44 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH
Confidence 344668899999999999999999999999998854
No 160
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.39 E-value=0.88 Score=34.59 Aligned_cols=34 Identities=21% Similarity=0.024 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC
Q 032443 36 SSAICFLRGKAYEAL-GNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 36 ~ssmc~LRGk~yeal-~N~~~A~~~YkeAL~~Dv~ 69 (140)
.+..+.-.|.+|..+ ++.++|..+|.+||.+++.
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 344555679999995 9999999999999999774
No 161
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=87.28 E-value=1 Score=32.38 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
...+...+..|.+|..++++++|..+|.+|+.+.+.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 344555555577777777777777777777665443
No 162
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=87.10 E-value=1.4 Score=31.93 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=14.7
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhc
Q 032443 44 GKAYEA----LGNCAQARLWYKAAIIA 66 (140)
Q Consensus 44 Gk~yea----l~N~~~A~~~YkeAL~~ 66 (140)
|.+|.. ..|..+|..||+.|+..
T Consensus 132 g~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 132 GLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 666666 56666666666666665
No 163
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=86.77 E-value=0.81 Score=34.50 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 032443 36 SSAICFLRGKAYEALGN-CAQARLWYKAAIIA 66 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N-~~~A~~~YkeAL~~ 66 (140)
.+...+..|.+|..+++ +++|.++|++||.+
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 46677888999999995 69999999999974
No 164
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=86.55 E-value=1.5 Score=31.59 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIA--------DPLCYEALECLIE 79 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~--------Dv~CyEAFe~Lv~ 79 (140)
.+...+..|.+|..+++++.|.++|.+|+.+ ++....++..|..
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455667799999999999999999999998 7776666665544
No 165
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=86.51 E-value=1.6 Score=31.75 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
++..|.+|...+|.++|..||+.|+..+ ..+|.-.|=.-
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~ 59 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQL 59 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 4444788877888888888888877653 45665555443
No 166
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=86.42 E-value=0.78 Score=35.18 Aligned_cols=44 Identities=25% Similarity=0.110 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIA------DPLCYEALECLIE 79 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~------Dv~CyEAFe~Lv~ 79 (140)
.+.+++..|.+|..++++++|..+|.+|+.+ ++....++..|-.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 4556677788888888888888888888877 5655555555443
No 167
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=86.41 E-value=1.4 Score=34.24 Aligned_cols=44 Identities=16% Similarity=0.035 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAII-----ADPLCYEALECLIE 79 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~-----~Dv~CyEAFe~Lv~ 79 (140)
.+...+-.|.+|..+++.++|..+|.+|+. .+|....++..|-.
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 344444558888888888888888888887 67766666655543
No 168
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=86.29 E-value=1.8 Score=31.62 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=26.4
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 40 CFLRGKAYEA----LGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 40 c~LRGk~yea----l~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
++..|.+|.. .++.++|..+|++|+..+ +.+|+..|-.
T Consensus 41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 82 (273)
T 1ouv_A 41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence 4555777777 777888888888777775 5666655543
No 169
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=86.16 E-value=1.6 Score=33.73 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cC-CCcHHHHHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAII-----AD-PLCYEALECLIE 79 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~-----~D-v~CyEAFe~Lv~ 79 (140)
.+...+-.|.+|..++++++|..+|.+|+. .| +....++..|-.
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 444555668888888888888888888888 46 666555555443
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=86.11 E-value=1.5 Score=29.97 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAI 64 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL 64 (140)
..+..|.+|..++++++|..+|.+|+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33334666666666666666666665
No 171
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=85.52 E-value=1.4 Score=35.86 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
+-.-+-+|.|+..+|+.+.|+.+|.+++..||. -++..+|.+-
T Consensus 208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 208 RAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 335577799999999999999999999999999 8888888653
No 172
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=85.24 E-value=2.4 Score=30.69 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADPLCY 71 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy 71 (140)
+.+|.+|...++...|..+|..++..+|..-
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 5679999999999999999999999999875
No 173
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=85.03 E-value=1.4 Score=35.59 Aligned_cols=56 Identities=16% Similarity=0.043 Sum_probs=40.5
Q ss_pred HHHHHHHHHH----HHc---CCHHHHHHHHHHHHhcCCCcHHHHHH---HH-HccCCCHHHHHHHHh
Q 032443 38 AICFLRGKAY----EAL---GNCAQARLWYKAAIIADPLCYEALEC---LI-ENHMLTCEQETSLLS 93 (140)
Q Consensus 38 smc~LRGk~y----eal---~N~~~A~~~YkeAL~~Dv~CyEAFe~---Lv-~~~lLt~~EE~eLl~ 93 (140)
.+-+-||.+. ..+ ++..++..++..+|..||+||.|+.. ++ .-+..+..+|.++++
T Consensus 104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~ 170 (306)
T 3dra_A 104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVD 170 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 3466788888 777 78999999999999999999999743 12 222223336766654
No 174
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=84.06 E-value=0.99 Score=38.57 Aligned_cols=31 Identities=32% Similarity=0.291 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
..++|++++..|+.+.|.+.|.+|++++|.-
T Consensus 313 ~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 3678999999999999999999999999953
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=83.74 E-value=1 Score=37.34 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHH---HHHccCC--CHHHHHHHHh
Q 032443 37 SAICFLRGKAYEALGN----------CAQARLWYKAAIIADPLCYEALEC---LIENHML--TCEQETSLLS 93 (140)
Q Consensus 37 ssmc~LRGk~yeal~N----------~~~A~~~YkeAL~~Dv~CyEAFe~---Lv~~~lL--t~~EE~eLl~ 93 (140)
.++..-||.+..+++. ...+..++..+|..+|+||.|+.. ++. ++- .-++|.++++
T Consensus 64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~-~l~~~~~~~EL~~~~ 134 (331)
T 3dss_A 64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCA 134 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence 4568889999999876 689999999999999999999863 333 232 2467777775
No 176
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=83.68 E-value=2.3 Score=32.97 Aligned_cols=46 Identities=11% Similarity=0.000 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHccC
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIA-----DPLCYEALECLIENHM 82 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~-----Dv~CyEAFe~Lv~~~l 82 (140)
+..++..|.+|..+++.++|..+|++|+.+ |+.....+..|-.-+.
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 455666699999999999999999999998 6666666655544443
No 177
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=83.29 E-value=3.3 Score=28.38 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=25.1
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 40 CFLRGKAYEA----LGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 40 c~LRGk~yea----l~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
|+..|.+|.. ..|..+|.+||+.|... ...+|...|
T Consensus 60 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~L 99 (138)
T 1klx_A 60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLIL 99 (138)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHH
Confidence 4444888887 78888888888888765 345555444
No 178
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=83.18 E-value=1.5 Score=33.86 Aligned_cols=33 Identities=15% Similarity=-0.106 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCY 71 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy 71 (140)
..+.+|.+|..+|+.+.|..+|+.++..+|...
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 164 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDAT 164 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH
Confidence 466789999999999999999999999999864
No 179
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=83.05 E-value=1.3 Score=33.37 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 032443 36 SSAICFLRGKAYEALGNCAQA-RLWYKAAIIA 66 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A-~~~YkeAL~~ 66 (140)
.+...+..|.+|..+++.++| ..+|++|+.+
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 366678889999999999999 8899999964
No 180
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=82.95 E-value=3.2 Score=31.71 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYE 72 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyE 72 (140)
.+...+.+|.+|...++++.|..+|.+|+.++|...+
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~ 83 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR 83 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh
Confidence 4555667899999999999999999999999999764
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=82.65 E-value=1.7 Score=37.70 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHH--HHHccCC-CHHHHHHHHh
Q 032443 39 ICFLRGKAYEALG--NCAQARLWYKAAIIADPLCYEALEC--LIENHML-TCEQETSLLS 93 (140)
Q Consensus 39 mc~LRGk~yeal~--N~~~A~~~YkeAL~~Dv~CyEAFe~--Lv~~~lL-t~~EE~eLl~ 93 (140)
..+-||-+...++ ++++|.++|..||.+||++|.|+.. .+-.+|= ..++|.+...
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 4677999999999 7799999999999999999999864 2222333 5677877764
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=82.29 E-value=1.6 Score=36.03 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHH--HHHccCC-CHHHHHHHHh
Q 032443 38 AICFLRGKAYEALG--NCAQARLWYKAAIIADPLCYEALEC--LIENHML-TCEQETSLLS 93 (140)
Q Consensus 38 smc~LRGk~yeal~--N~~~A~~~YkeAL~~Dv~CyEAFe~--Lv~~~lL-t~~EE~eLl~ 93 (140)
.+.+-||.+...++ ..+.|..++..+|..||++|.|+.. .+=.++- ..++|.+++.
T Consensus 109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 109 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34667999999999 4899999999999999999999853 2222232 3577877765
No 183
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=81.84 E-value=1.8 Score=32.51 Aligned_cols=32 Identities=28% Similarity=0.192 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 35 ISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 35 l~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
..+.+++..|.+|..++++++|..+|.+|+.+
T Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 45 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34566677788888888888888888888776
No 184
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=81.01 E-value=1.7 Score=33.22 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
..+-+|.+|..+++...|..+|.+|| +||..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 34445666666666666666666666 66643
No 185
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=80.99 E-value=1.6 Score=36.49 Aligned_cols=39 Identities=10% Similarity=0.189 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHc-C-CHHHHHHHHHHHHhcCCCcHHHHHH
Q 032443 38 AICFLRGKAYEAL-G-NCAQARLWYKAAIIADPLCYEALEC 76 (140)
Q Consensus 38 smc~LRGk~yeal-~-N~~~A~~~YkeAL~~Dv~CyEAFe~ 76 (140)
.+-+-||.+...+ + +.+++.+++..+|..||+||.|+..
T Consensus 124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~ 164 (349)
T 3q7a_A 124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAY 164 (349)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3467799999999 7 8999999999999999999999753
No 186
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=80.88 E-value=2.1 Score=29.37 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=24.7
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 032443 40 CFLRGKAYEA----LGNCAQARLWYKAAIIAD 67 (140)
Q Consensus 40 c~LRGk~yea----l~N~~~A~~~YkeAL~~D 67 (140)
|+-.|.+|.. ..|..+|.+||+.|....
T Consensus 96 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 96 CLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 4555999999 999999999999999874
No 187
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=80.55 E-value=2 Score=33.26 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
.-..|.+|.+|...+++++|..+|++|+.+
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 132 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESK 132 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344567899999999999999999999887
No 188
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=79.30 E-value=2.8 Score=28.53 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
.+...+..|.+|..+++++.|..+|.+|+.
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 355566668888888888888888888887
No 189
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.13 E-value=1.1 Score=41.57 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAA 63 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeA 63 (140)
+..+|++|++|.++|..++|.+||++|
T Consensus 840 ~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 840 PIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456899999999999999999999876
No 190
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=78.85 E-value=5.2 Score=33.45 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCc-HHHHHHHHHccC
Q 032443 37 SAICFLRGKAYEAL-----GNCAQARLWYKAAIIADPLC-YEALECLIENHM 82 (140)
Q Consensus 37 ssmc~LRGk~yeal-----~N~~~A~~~YkeAL~~Dv~C-yEAFe~Lv~~~l 82 (140)
.+.....|..|..+ |+.++|.++|++||.+.|.- -.+.-..-+...
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 44555669999996 99999999999999999954 555555544433
No 191
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=78.62 E-value=5.1 Score=32.75 Aligned_cols=43 Identities=7% Similarity=0.001 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCY-EALECLIE 79 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~Cy-EAFe~Lv~ 79 (140)
..+.+..|.+++.+++.++|...|..||.++|.+. .++..+..
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 364 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMK 364 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHH
Confidence 45677789999999999999999999999999875 46665543
No 192
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=78.26 E-value=3.3 Score=33.56 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=30.3
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC---cHHHHHHH
Q 032443 40 CFLRGKAYEA----LGNCAQARLWYKAAIIADPL---CYEALECL 77 (140)
Q Consensus 40 c~LRGk~yea----l~N~~~A~~~YkeAL~~Dv~---CyEAFe~L 77 (140)
.+-.|.+|.. .+|..+|..||+.|+..++. +-.|...|
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l 446 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITE 446 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHH
Confidence 3444999998 89999999999999999954 77765544
No 193
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=77.06 E-value=3.8 Score=30.76 Aligned_cols=31 Identities=13% Similarity=-0.007 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADP 68 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv 68 (140)
...+-.|.+|..++++++|..+|.+||.+..
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5677779999999999999999999998853
No 194
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.62 E-value=4.8 Score=30.37 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE 75 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe 75 (140)
++|| +..|-+++|.++|+.+-...|+++|.|-.|-.
T Consensus 80 LYyL-Avg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 80 LYYL-TIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHH-HHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHH-HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4555 99999999999999999999999999987743
No 195
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=76.41 E-value=4 Score=30.60 Aligned_cols=36 Identities=11% Similarity=-0.013 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
...+.+++-.|.+|..+++.++|..+|.+||.+...
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345667777799999999999999999999997643
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.30 E-value=3.8 Score=31.64 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIAD 67 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~D 67 (140)
.+....+.|++|.+++|+.+|+.+|..|+.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 45567788999999999999999999999864
No 197
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.18 E-value=4.2 Score=30.37 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 032443 39 ICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE 75 (140)
Q Consensus 39 mc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe 75 (140)
++|| +..|-++++.++|+.+-...|+++|.|-.|-.
T Consensus 81 LYyL-Avg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 81 LYYL-TIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHH-HHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHH-HHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4555 99999999999999999999999999998743
No 198
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=75.93 E-value=2.8 Score=32.03 Aligned_cols=35 Identities=3% Similarity=-0.179 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLC 70 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~C 70 (140)
.+....-.|.+|..++++++|..+|.+|+.+.+..
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 34455566999999999999999999999986543
No 199
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=75.64 E-value=3.5 Score=31.25 Aligned_cols=33 Identities=12% Similarity=-0.064 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 032443 42 LRGKAYEALGNCAQARLWYKAAIIADPLCYEAL 74 (140)
Q Consensus 42 LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAF 74 (140)
..|.++..+++.+.|...|..|++.+|...+++
T Consensus 139 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 139 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 334555555555555555555555555444443
No 200
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=74.69 E-value=6.4 Score=26.74 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
+..|.-..-++.-.+.-+|.+.|..+|++|+..
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666677888889999999999999999853
No 201
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=74.65 E-value=4.9 Score=35.14 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHH-------HHHHHhcCCCCchhHHHHHHHHHhh
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQ-------ETSLLSSLEFGFEDGWLSSFYSCLI 112 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~E-------E~eLl~sL~f~~e~~~lk~lY~srL 112 (140)
-+| |-+.--....+.|..||..|+.+.|....++++|-=-..-..+. -+.|....||+....=|..++..-+
T Consensus 156 ~~L-GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~~ 234 (497)
T 1ya0_A 156 VHL-GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHH-HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Confidence 344 77766677778999999999999999999999984221111111 2345556677766666666666655
Q ss_pred hccC
Q 032443 113 KKCR 116 (140)
Q Consensus 113 ~Ky~ 116 (140)
++..
T Consensus 235 ~~~~ 238 (497)
T 1ya0_A 235 ESRD 238 (497)
T ss_dssp TSCC
T ss_pred hhhh
Confidence 5543
No 202
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=72.46 E-value=5.7 Score=30.43 Aligned_cols=43 Identities=12% Similarity=-0.038 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
.=.|..||++...+++.+|-+++.+|++.-+.....|.++|-.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~ 57 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILI 57 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHH
Confidence 3456669999999999999999999999877666666665543
No 203
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.54 E-value=2.7 Score=39.44 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAA 63 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeA 63 (140)
..+|++|++|.+.|..++|.+||++|
T Consensus 843 ~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 843 IAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34799999999999999999999887
No 204
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=67.57 E-value=8.3 Score=31.73 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHccCCC--HHHHHHHHhc
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAIIADP--LCYEALECLIENHMLT--CEQETSLLSS 94 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~~Dv--~CyEAFe~Lv~~~lLt--~~EE~eLl~s 94 (140)
++-|.+|...++.+.|..|+.+.|..++ ...|++-.+|.-.+.. +++-...++.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5669999999999999999999999997 9999998888776654 4455555543
No 205
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=65.64 E-value=14 Score=30.14 Aligned_cols=33 Identities=18% Similarity=0.076 Sum_probs=20.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Q 032443 48 EALGNCAQARLWYKAAIIADPLCYEALECLIEN 80 (140)
Q Consensus 48 eal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~ 80 (140)
...++.++|...|..||..+|.+.+.+-.+++.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~ 55 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEA 55 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 446666666666666666666666666655554
No 206
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=63.93 E-value=15 Score=29.62 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=21.2
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 40 CFLRGKAYEA----LGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 40 c~LRGk~yea----l~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
++..|.+|.. .+|.++|..||+.|...+ .-+|...|
T Consensus 78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~L 117 (490)
T 2xm6_A 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNL 117 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 3444777766 677777777777776543 34444433
No 207
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=62.42 E-value=14 Score=28.02 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
.+.+-+.+++|.++...++.+.|..++.+||...+.
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~ 46 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 46 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 445666777788888888888888888888776653
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=57.52 E-value=13 Score=31.35 Aligned_cols=36 Identities=31% Similarity=0.248 Sum_probs=30.5
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 30 DGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 30 d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
.....+..++.-| |.+|..+++.+.|...|.+||.+
T Consensus 376 ~~Hp~~a~~l~nL-a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 376 VYSLNVASMWLKL-GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp SSCHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHH-HHHHHhccCHHHHHHHHHHHHHH
Confidence 3445566777777 99999999999999999999987
No 209
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=56.50 E-value=18 Score=27.37 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
+......|.+|..+|+++.|..+|.+|+.+.+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 334455699999999999999999999998765
No 210
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=54.78 E-value=22 Score=23.90 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
|.-..-|+.-.+.-+|+..|..+|++|+.
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455678889999999999999999985
No 211
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=54.34 E-value=22 Score=23.63 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
|.-..-|+.-.+.-+|+..|..+|++|+.
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455678889999999999999999985
No 212
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=54.19 E-value=18 Score=29.43 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHH
Q 032443 40 CFLRGKAYEALG---NCAQARLWYKAAIIADPLCYEAL 74 (140)
Q Consensus 40 c~LRGk~yeal~---N~~~A~~~YkeAL~~Dv~CyEAF 74 (140)
++..|.+|...+ +..+|..||+.|...++..-.+.
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 344499999999 99999999999999988877653
No 213
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=54.05 E-value=7.4 Score=32.03 Aligned_cols=69 Identities=13% Similarity=0.006 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCCcHHHHHHH-HHccCCCHHHHHHHHhcCC-CCchhHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIA----------DPLCYEALECL-IENHMLTCEQETSLLSSLE-FGFEDGWL 104 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~----------Dv~CyEAFe~L-v~~~lLt~~EE~eLl~sL~-f~~e~~~l 104 (140)
++..++ + ++.++++++.|...++.+++. ||++-+++--+ +=..++. ++-.++++.|. ..|+..|+
T Consensus 213 ~~~lLl-n-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg-k~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 213 TQLGLL-N-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG-LDTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHH-H-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT-CTTHHHHHHHHHTTCCCHHH
T ss_pred cHHHHH-H-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC-hHHHHHHHHHHHhCCCChHH
Confidence 333444 4 999999999999999977776 69999999444 3444444 35566776543 55666666
Q ss_pred HHHH
Q 032443 105 SSFY 108 (140)
Q Consensus 105 k~lY 108 (140)
+.+-
T Consensus 290 ~d~~ 293 (310)
T 3mv2_B 290 KHHQ 293 (310)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=52.31 E-value=18 Score=30.19 Aligned_cols=35 Identities=17% Similarity=-0.025 Sum_probs=28.8
Q ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 31 ~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
....+..++.-| |++|..+++.+.|...|++||.+
T Consensus 366 ~Hp~~a~~l~nL-a~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 366 SHPVRGVQVMKV-GKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp SCHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHH
Confidence 334455666666 99999999999999999999985
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=52.07 E-value=22 Score=29.98 Aligned_cols=37 Identities=11% Similarity=0.018 Sum_probs=31.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 29 EDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 29 ~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
.+..+.+..++-.| |.+|..++++++|...|++||.+
T Consensus 333 g~~Hp~~a~~~~nL-a~~y~~~g~~~eA~~~~~~aL~i 369 (433)
T 3qww_A 333 EDSNVYMLHMMYQA-MGVCLYMQDWEGALKYGQKIIKP 369 (433)
T ss_dssp CTTSHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChhchHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHHHH
Confidence 34456667777777 99999999999999999999975
No 216
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.71 E-value=15 Score=28.31 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEA 73 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEA 73 (140)
+.++..| |++|..+++.+.|.+.|+.++.+-.....+
T Consensus 55 ~~al~~l-~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 55 ETSILEL-GQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHH-HHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4566666 999999999999999999999987766554
No 217
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=51.69 E-value=18 Score=30.98 Aligned_cols=35 Identities=11% Similarity=-0.019 Sum_probs=30.1
Q ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 31 GEINISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 31 ~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
....+..++.-| |.+|..+|+.+.|...|.+||.+
T Consensus 388 ~Hp~~a~~l~nL-a~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 388 NNAQLGMAVMRA-GLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp TCHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHH
Confidence 445567777777 99999999999999999999976
No 218
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=45.91 E-value=37 Score=22.28 Aligned_cols=30 Identities=7% Similarity=-0.016 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
.|.-..-++.-.+..+|.+.|..+|++|+.
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445667778899999999999999985
No 219
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=44.47 E-value=34 Score=24.37 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=23.3
Q ss_pred HHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 35 ISSAI-CFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 35 l~ssm-c~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
+.-++ ..-++.-.+..+|+..|..+|++|+.
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444 45567778888999999999999875
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=44.44 E-value=34 Score=26.19 Aligned_cols=35 Identities=9% Similarity=-0.067 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 32 EINISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 32 gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
+...++-.-++.|.++-..+|+.||...|++||+.
T Consensus 58 sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 58 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44456666666799999999999999999999864
No 221
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=43.64 E-value=40 Score=22.82 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
.|.-..-++.-.+..+|+..|..+|++|+.
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444456778889999999999999999975
No 222
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=43.07 E-value=24 Score=28.71 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=5.8
Q ss_pred cCCHHHHHHHHHHHH
Q 032443 50 LGNCAQARLWYKAAI 64 (140)
Q Consensus 50 l~N~~~A~~~YkeAL 64 (140)
.+|.++|..||+.|.
T Consensus 264 ~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGR 278 (452)
T ss_dssp GCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 333333333333333
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=43.04 E-value=35 Score=28.47 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=30.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 29 EDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 29 ~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
.+..+.+..++-.| |.+|..++++++|...|++||.+
T Consensus 322 g~~h~~~~~~~~~L-~~~y~~~g~~~eA~~~~~~~L~i 358 (429)
T 3qwp_A 322 PDINIYQLKVLDCA-MDACINLGLLEEALFYGTRTMEP 358 (429)
T ss_dssp CTTSHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHh
Confidence 34555666777777 99999999999999999999976
No 224
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=41.55 E-value=23 Score=24.77 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh
Q 032443 36 SSAICFLRGKAYEAL---GNCAQARLWYKAAII 65 (140)
Q Consensus 36 ~ssmc~LRGk~yeal---~N~~~A~~~YkeAL~ 65 (140)
.|-.|.=||...+-. |+...|++||+..+.
T Consensus 15 ~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 15 QAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 47 (89)
T ss_dssp HHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHH
Confidence 455577789888888 999999999998653
No 225
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=41.42 E-value=28 Score=30.31 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=31.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 032443 45 KAYEALGNCAQARLWYKAAIIADPLCYEALECL 77 (140)
Q Consensus 45 k~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~L 77 (140)
.+|+..|.++.|...++.||.+|..-...|..|
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel 247 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLERAHMGMFTEL 247 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 689999999999999999999999999999988
No 226
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=41.02 E-value=32 Score=29.83 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAIIA-DPL 69 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~-Dv~ 69 (140)
...=.|-.||+|...+++..|-+++.+|++. -|.
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 3344555699999999999999999999997 443
No 227
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=40.79 E-value=41 Score=28.78 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=30.5
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 30 DGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 30 d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
+....+..++--| |.+|..++++++|...|.+||.+
T Consensus 345 ~~Hp~~a~~~~nL-a~~y~~~g~~~eA~~~~~~aL~i 380 (490)
T 3n71_A 345 DTNLYVLRLLSIA-SEVLSYLQAYEEASHYARRMVDG 380 (490)
T ss_dssp TTSHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455667777777 99999999999999999999986
No 228
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.14 E-value=43 Score=24.43 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 032443 36 SSAICFLRGKAYEALGNCAQARLWYKAAI 64 (140)
Q Consensus 36 ~ssmc~LRGk~yeal~N~~~A~~~YkeAL 64 (140)
.|-.|.=||.-.+-.++...|+++|++.+
T Consensus 21 ~AF~~Is~AL~~DE~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 21 KAFLFVNKGLNTDELGQKEEAKNYYKQGI 49 (116)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 45567778888888999999999999765
No 229
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=30.64 E-value=59 Score=33.07 Aligned_cols=27 Identities=26% Similarity=0.048 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAA 63 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeA 63 (140)
..+.+-.|+++++++.++.|..+|..|
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 445666788888888888888888776
No 230
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=29.85 E-value=97 Score=26.21 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHh
Q 032443 54 AQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLS 93 (140)
Q Consensus 54 ~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~ 93 (140)
-++...+..+|..|..|-+-.+.|++.+.||.+|...+..
T Consensus 7 ~~~l~~~~~~l~~dl~~~~~~~~L~~~~vlt~de~e~I~~ 46 (549)
T 2a5y_B 7 CRALSTAHTRLIHDFEPRDALTYLEGKNIFTEDHSELISK 46 (549)
T ss_dssp HHHHHHHHHHHHHHCCGGGGHHHHHHTTSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCHHHHHHHHc
Confidence 4678889999999999999999999999999999888876
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=29.40 E-value=72 Score=29.43 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 42 LRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 42 LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
+-|.+...+.+++.|++||+.+|..- +.+-|...|.+
T Consensus 618 iLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLe 654 (754)
T 4gns_B 618 LLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLK 654 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHH
No 232
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=29.33 E-value=40 Score=20.16 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 032443 53 CAQARLWYKAAIIADPLC 70 (140)
Q Consensus 53 ~~~A~~~YkeAL~~Dv~C 70 (140)
.++|+.+|+.||+.+--|
T Consensus 18 yDKAVaSfk~alk~~~~~ 35 (37)
T 3s6n_M 18 YDKAVASFKHALKNGDIC 35 (37)
T ss_pred HHHHHHHHHHHHhcCCcC
Confidence 478999999999987655
No 233
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.31 E-value=44 Score=29.81 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 032443 32 EINISSAICFLRGKAYEALGNCAQARLWYKAAIIADPL 69 (140)
Q Consensus 32 gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~ 69 (140)
...-.+-=.|--|+++..+.++..|.+++..|++.=|.
T Consensus 265 sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 265 SSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred CHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 33333444444599999999999999999999997653
No 234
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=28.04 E-value=1.5e+02 Score=23.87 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH-HHHHccCCCHHHHHHHH
Q 032443 38 AICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALE-CLIENHMLTCEQETSLL 92 (140)
Q Consensus 38 smc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe-~Lv~~~lLt~~EE~eLl 92 (140)
-...+-|++.-.+++++.|...|+.....++- |-+-| .+.+|..++.-...+.+
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l-f~~vEnliyeN~vp~~~d~~~i~ 169 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFL-FSPVENLLLENKVPQKRDKENVR 169 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHTTCCCCCC------
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc-cchHHHHHhhcCCCcccchHHHH
Confidence 44566788899999999999999999999986 44555 66677777744443333
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=26.67 E-value=1.4e+02 Score=22.81 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHc------cCCCHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIEN------HMLTCEQETSLL 92 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~------~lLt~~EE~eLl 92 (140)
|=+....++--..++|..+|+.-.-.|+-.-|+=-|-++..+.+ +||+.+|+..|.
T Consensus 94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~~~~l~~~e~~~~~~ 155 (161)
T 4h7y_A 94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQKKQLLSEEEKKNLS 155 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTTCSCSSCTTC-----
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcCCCeeccccccCccc
Confidence 44555555555667888888888888888888888888877764 677766665554
No 236
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=26.15 E-value=1.1e+02 Score=25.43 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=28.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 032443 29 EDGEINISSAICFLRGKAYEALGNCAQARLWYKAAIIA 66 (140)
Q Consensus 29 ~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~ 66 (140)
..|-+.-.|+.. |++|+|..+++.++|+...++++..
T Consensus 195 ~~gr~tk~aa~a-llarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 195 SNGYINYWAAQA-LLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CTTSCCHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcCcHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 345566555555 5599999999999999999988863
No 237
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=25.86 E-value=98 Score=25.73 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=28.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 29 EDGEINISSAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 29 ~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
..|-+.-.|+..+ ++|+|..+++.++|+..-++++.
T Consensus 183 ~~gr~tk~aa~al-larvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 183 NNGRMNKYAARAL-LARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp CTTSCCHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCeecHHHHHHH-HHHHHHhcccHHHHHHHHHHHHh
Confidence 3455665666554 59999999999999999998885
No 238
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=25.72 E-value=58 Score=24.13 Aligned_cols=46 Identities=7% Similarity=-0.008 Sum_probs=35.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHHHHHHh
Q 032443 47 YEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQETSLLS 93 (140)
Q Consensus 47 yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE~eLl~ 93 (140)
|-..++.+.|..|.++ |...-+-.+-...+|..-|=..+.|++++.
T Consensus 20 Yf~~~D~~Ea~~~l~e-L~~p~~~~~~V~~~I~~aldrk~~ere~~s 65 (165)
T 2rg8_A 20 YFEHGDTNEVAEMLRD-LNLGEMKSGVPVLAVSLALEGKASHREMTS 65 (165)
T ss_dssp HHHHCCHHHHHHHHHH-HTCSGGGGHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHH-hCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5567899999999998 555557777778888877777778886653
No 239
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=25.32 E-value=94 Score=25.89 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=28.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 29 EDGEINISSAICFLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 29 ~d~gikl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
..|-+.-.|+..+ ++|+|.-+++.++|....++++.
T Consensus 189 ~~gr~tk~aa~al-lArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 189 NKGKVNRWAAMTL-LSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp CTTSCCHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCeeeHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHh
Confidence 3455665555555 59999999999999999988875
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=24.43 E-value=1.7e+02 Score=23.71 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHccCCCHHHH---------H-HHHhcCCCCchhHHHHHHHH
Q 032443 40 CFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIENHMLTCEQE---------T-SLLSSLEFGFEDGWLSSFYS 109 (140)
Q Consensus 40 c~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~~~lLt~~EE---------~-eLl~sL~f~~e~~~lk~lY~ 109 (140)
..-+..++.++++...|......++..||..-++..+|+.-..-+..-. . .|.+.|...|.. -++.||.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~-~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP-TLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH-HHHHHHH
Confidence 3445778889999999999999999999999999999988766653221 1 233455555533 4566777
Q ss_pred Hhhhcc
Q 032443 110 CLIKKC 115 (140)
Q Consensus 110 srL~Ky 115 (140)
..+..-
T Consensus 253 ~il~~~ 258 (388)
T 2ff4_A 253 RILRQQ 258 (388)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 766654
No 241
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.33 E-value=68 Score=21.58 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 032443 41 FLRGKAYEALGNCAQARLWYKAAII 65 (140)
Q Consensus 41 ~LRGk~yeal~N~~~A~~~YkeAL~ 65 (140)
.-.||=|..+||.+.|..+|.-|+.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3468999999999999999988774
No 242
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.65 E-value=1.6e+02 Score=22.17 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------cHHHHHHHHHccCCCHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPL-------CYEALECLIENHMLTCEQE 88 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~-------CyEAFe~Lv~~~lLt~~EE 88 (140)
|..+-=-+..+|..+|+.+|.+-|..++..... -|.+|.+=+..++|...|+
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~~~~~~~~~~~ 154 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARVSRQTLLALEK 154 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444445588999999999999999999998765 3556666666666655444
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=22.05 E-value=91 Score=26.33 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 032443 34 NISSAICFLRGKAYEALGNCAQARLWYKAAIIAD 67 (140)
Q Consensus 34 kl~ssmc~LRGk~yeal~N~~~A~~~YkeAL~~D 67 (140)
.+---+|.+.-++|-+++|..+|+..|..|...-
T Consensus 136 ~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 136 NLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 3445579999999999999999999999886543
No 244
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.82 E-value=1.2e+02 Score=22.51 Aligned_cols=89 Identities=11% Similarity=0.087 Sum_probs=57.6
Q ss_pred CcccccCCCcccccccchhccCCCCCCCchhHHHHHHHHHHHHHHHcC-----CHHHHHHHHH----HHHh-cCCCcHHH
Q 032443 4 DAKVDEDGNVYDTKDINVMYLDKDGEDGEINISSAICFLRGKAYEALG-----NCAQARLWYK----AAII-ADPLCYEA 73 (140)
Q Consensus 4 ~~~~~~~g~v~~~~~~~~~~~~~~~~d~gikl~ssmc~LRGk~yeal~-----N~~~A~~~Yk----eAL~-~Dv~CyEA 73 (140)
...+..=|.+.|-+|..++...++. .++-++.=++-.|...+. |..+|.+|.+ +|+. -.|.-|-.
T Consensus 25 ~~~v~~Ig~~nPv~DFk~lL~~~~~-----~~~~A~~qM~~vI~~Ll~~s~~~~y~KA~ecL~~lR~~~i~~~ep~~yN~ 99 (152)
T 1rw2_A 25 EGSVTSVGSVNPAENFRVLVKQKKA-----SFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQRFNN 99 (152)
T ss_dssp SSSSCSSSSSCTTHHHHHHHHSSSS-----CHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHTCSHHHHH
T ss_pred cCCCceeCCCCcHHHHHHHHHcCch-----hHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccChHHHHH
Confidence 3345666788888888877655332 277888888889988876 7889988864 3444 37888888
Q ss_pred HHHHHHccCCCH--HHHHHHHhcCCC
Q 032443 74 LECLIENHMLTC--EQETSLLSSLEF 97 (140)
Q Consensus 74 Fe~Lv~~~lLt~--~EE~eLl~sL~f 97 (140)
|=.-+..-+++. .+=|.+|-+-..
T Consensus 100 Fl~~LK~~l~~~~l~~FW~~Iv~~~l 125 (152)
T 1rw2_A 100 FLKALQEKVEIKQLNHFWEIVVQDGI 125 (152)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHCCc
Confidence 754433322221 455777754444
No 245
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.09 E-value=95 Score=23.15 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 032443 37 SAICFLRGKAYEALGNCAQARLWYKAAIIADPLCYEALECLIE 79 (140)
Q Consensus 37 ssmc~LRGk~yeal~N~~~A~~~YkeAL~~Dv~CyEAFe~Lv~ 79 (140)
|..+-=-+..+|..+|+.+|.+-|+.++..... ..+.|.+
T Consensus 101 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~---P~~rL~~ 140 (152)
T 4a1g_A 101 SPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE---PREFLQQ 140 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB---SHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---cHHHHHH
Confidence 444444588999999999999999999997554 4444443
Done!