Query 032446
Match_columns 140
No_of_seqs 314 out of 1273
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 14:12:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1748 Acyl carrier protein/N 99.8 1.3E-21 2.9E-26 141.8 4.4 82 56-138 48-130 (131)
2 PRK07117 acyl carrier protein; 99.8 5E-21 1.1E-25 128.8 6.9 78 57-135 1-79 (79)
3 PRK05828 acyl carrier protein; 99.8 1.4E-20 3.1E-25 127.9 7.8 82 57-139 1-83 (84)
4 PRK05350 acyl carrier protein; 99.8 4.5E-20 9.9E-25 124.2 7.1 79 57-136 2-81 (82)
5 CHL00124 acpP acyl carrier pro 99.8 9.6E-20 2.1E-24 122.1 6.9 81 57-138 1-82 (82)
6 PRK07639 acyl carrier protein; 99.8 2.2E-19 4.9E-24 122.4 8.3 82 57-138 1-85 (86)
7 PRK05883 acyl carrier protein; 99.8 3.3E-19 7.1E-24 122.8 7.9 80 56-136 9-89 (91)
8 PRK08172 putative acyl carrier 99.8 2.8E-19 6E-24 121.0 6.9 76 61-137 4-80 (82)
9 PRK12449 acyl carrier protein; 99.8 4.4E-19 9.6E-24 118.4 7.7 78 57-135 1-79 (80)
10 PTZ00171 acyl carrier protein; 99.8 1.3E-18 2.7E-23 129.6 8.1 85 53-138 62-147 (148)
11 TIGR00517 acyl_carrier acyl ca 99.7 6.8E-18 1.5E-22 111.9 6.6 74 60-134 2-76 (77)
12 PRK06508 acyl carrier protein; 99.7 7.6E-18 1.7E-22 116.5 6.6 80 60-140 2-93 (93)
13 COG0236 AcpP Acyl carrier prot 99.7 1.5E-17 3.3E-22 111.4 6.5 76 59-135 3-79 (80)
14 PRK09184 acyl carrier protein; 99.7 7E-17 1.5E-21 110.9 7.6 77 59-136 4-88 (89)
15 PRK07081 acyl carrier protein; 99.7 1.4E-16 3E-21 107.8 6.9 77 63-140 2-82 (83)
16 PRK00982 acpP acyl carrier pro 99.7 2.5E-16 5.5E-21 104.4 6.7 74 61-135 3-77 (78)
17 PF00550 PP-binding: Phosphopa 99.6 4.3E-15 9.2E-20 95.0 7.5 67 64-131 1-67 (67)
18 PRK05087 D-alanine--poly(phosp 99.6 6.4E-15 1.4E-19 98.8 6.8 73 61-134 2-77 (78)
19 TIGR01688 dltC D-alanine--poly 99.3 1.4E-12 3.1E-17 86.5 5.0 68 64-132 2-72 (73)
20 PF14573 PP-binding_2: Acyl-ca 99.3 6.7E-12 1.5E-16 85.5 6.7 76 60-137 9-90 (96)
21 smart00823 PKS_PP Phosphopante 98.9 1.4E-08 3E-13 65.2 8.0 74 61-134 12-85 (86)
22 TIGR02813 omega_3_PfaA polyket 98.8 1.2E-08 2.7E-13 101.7 6.6 77 58-135 1304-1383(2582)
23 PRK06060 acyl-CoA synthetase; 98.6 1.7E-07 3.7E-12 83.2 8.2 75 62-136 546-620 (705)
24 TIGR03443 alpha_am_amid L-amin 98.3 1.8E-06 3.9E-11 81.8 7.4 76 59-135 846-921 (1389)
25 PRK10252 entF enterobactin syn 98.3 2.8E-06 6.1E-11 79.6 7.8 75 57-134 974-1048(1296)
26 PRK12467 peptide synthase; Pro 98.2 4.5E-06 9.8E-11 86.4 8.1 74 57-133 3601-3674(3956)
27 COG3433 Aryl carrier domain [S 98.0 1.1E-05 2.5E-10 53.1 4.1 69 66-136 3-71 (74)
28 TIGR02813 omega_3_PfaA polyket 97.9 1E-05 2.3E-10 81.4 5.2 76 58-134 1208-1286(2582)
29 PRK05691 peptide synthase; Val 97.9 3.5E-05 7.5E-10 80.5 8.7 77 57-136 582-658 (4334)
30 PRK05691 peptide synthase; Val 97.9 2.9E-05 6.3E-10 81.1 7.5 75 57-134 4237-4311(4334)
31 PRK12467 peptide synthase; Pro 97.9 3.6E-05 7.8E-10 80.0 7.4 75 57-134 1026-1100(3956)
32 PRK12316 peptide synthase; Pro 97.8 3.8E-05 8.2E-10 81.2 7.5 75 57-134 5068-5142(5163)
33 PRK12316 peptide synthase; Pro 97.7 7.2E-05 1.6E-09 79.2 7.6 76 57-135 2512-2587(5163)
34 PF07377 DUF1493: Protein of u 97.4 0.00056 1.2E-08 48.4 6.1 59 60-118 2-64 (111)
35 KOG1202 Animal-type fatty acid 96.8 0.00062 1.3E-08 65.0 1.8 54 66-119 2009-2062(2376)
36 PF10501 Ribosomal_L50: Riboso 95.5 0.12 2.6E-06 36.5 7.8 75 58-133 5-81 (112)
37 TIGR02372 4_coum_CoA_lig 4-cou 94.9 0.089 1.9E-06 44.3 6.7 79 57-135 3-93 (386)
38 KOG2452 Formyltetrahydrofolate 91.9 0.4 8.6E-06 42.5 5.6 75 60-136 321-396 (881)
39 KOG1178 Non-ribosomal peptide 84.4 1.4 3E-05 42.2 4.3 67 64-133 601-667 (1032)
40 COG1669 Predicted nucleotidylt 63.7 41 0.0009 23.4 6.3 63 60-122 8-83 (97)
41 PF08766 DEK_C: DEK C terminal 54.0 12 0.00026 22.7 2.1 24 92-115 17-40 (54)
42 smart00151 SWIB SWI complex, B 47.3 43 0.00093 21.7 4.1 56 54-109 17-75 (77)
43 PF03471 CorC_HlyC: Transporte 44.3 27 0.00059 22.6 2.7 27 102-131 16-42 (81)
44 PF00874 PRD: PRD domain; Int 34.4 31 0.00067 21.5 1.8 21 98-118 59-79 (89)
45 PRK00157 rplL 50S ribosomal pr 30.8 47 0.001 24.1 2.4 20 94-113 16-35 (123)
46 PLN00204 CP12 gene family prot 30.4 91 0.002 22.7 3.8 18 57-74 52-69 (126)
47 TIGR00855 L12 ribosomal protei 29.4 50 0.0011 24.0 2.3 21 93-113 16-36 (126)
48 PF09346 SMI1_KNR4: SMI1 / KNR 29.4 33 0.00071 22.8 1.3 18 100-117 5-22 (130)
49 smart00860 SMI1_KNR4 SMI1 / KN 27.2 50 0.0011 21.2 1.9 18 100-117 5-22 (129)
50 PF13592 HTH_33: Winged helix- 27.0 39 0.00084 20.7 1.2 20 98-117 7-26 (60)
51 COG0222 RplL Ribosomal protein 24.4 73 0.0016 23.2 2.4 17 96-112 18-34 (124)
52 PRK10696 tRNA 2-thiocytidine b 24.2 1.3E+02 0.0029 23.6 4.2 45 61-111 11-58 (258)
53 PF14568 SUKH_6: SMI1-KNR4 cel 23.5 56 0.0012 21.7 1.7 17 100-116 2-18 (120)
54 CHL00083 rpl12 ribosomal prote 23.4 74 0.0016 23.3 2.3 19 95-113 17-35 (131)
55 COG1151 6Fe-6S prismane cluste 22.2 98 0.0021 28.1 3.2 27 89-115 465-493 (576)
56 cd01807 GDX_N ubiquitin-like d 22.0 51 0.0011 20.8 1.1 36 58-93 18-61 (74)
57 COG0041 PurE Phosphoribosylcar 20.9 2.2E+02 0.0048 21.6 4.4 40 96-135 15-54 (162)
58 PF06755 DUF1219: Protein of u 20.7 83 0.0018 22.5 2.0 24 55-78 14-38 (114)
No 1
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=1.3e-21 Score=141.80 Aligned_cols=82 Identities=48% Similarity=0.725 Sum_probs=78.4
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHH
Q 032446 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 56 ~m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
|.+++++.++|..+++.+..+++ +.++.+++|. |||+||||+||++|+|||||||+||+.+.+++.|++++++||.++
T Consensus 48 ~l~k~~v~~RVl~VVk~~dki~~-~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~ 126 (131)
T KOG1748|consen 48 CLAKKEVVDRVLDVVKKFDKIDP-SKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAADYIADK 126 (131)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCc-cccchhhHHHHhcCCcccccchhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHhc
Confidence 78999999999999999999998 6899999999 999999999999999999999999999999999999999999988
Q ss_pred HHhh
Q 032446 135 VEKK 138 (140)
Q Consensus 135 ~~~k 138 (140)
...+
T Consensus 127 ~d~k 130 (131)
T KOG1748|consen 127 PDVK 130 (131)
T ss_pred cccc
Confidence 7654
No 2
>PRK07117 acyl carrier protein; Validated
Probab=99.84 E-value=5e-21 Score=128.78 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHHHHh-CCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRRQL-ALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l-~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
|++++++++|+++|++++ ++++ +.|+++++|.|||+|||+++|+++.+|++|||+||++++.+++||+++++||.+++
T Consensus 1 M~~~ei~~~v~~ii~e~~p~i~~-~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~~ 79 (79)
T PRK07117 1 MDKQRIFDILVRHIREVLPDLDQ-HQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAKL 79 (79)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCH-HHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHhC
Confidence 678999999999999999 7988 69999999999999999999999999999999999999999999999999998863
No 3
>PRK05828 acyl carrier protein; Validated
Probab=99.83 E-value=1.4e-20 Score=127.93 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=77.5
Q ss_pred CChHHHHHHHHHHHHH-HhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRR-QLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e-~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
|++.+++++|++++++ .++++. +.++++++|.|||+|||++++++++||++|||++|++++.++.||+++++||.+++
T Consensus 1 m~~~eI~~~i~~ii~e~~~~~~~-d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~ 79 (84)
T PRK05828 1 MQEMEILLKIKEIAKKKNFAVTL-DESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELK 79 (84)
T ss_pred CCHHHHHHHHHHHHHHhccCCCc-ccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 7899999999999998 688887 58999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhc
Q 032446 136 EKKA 139 (140)
Q Consensus 136 ~~k~ 139 (140)
++++
T Consensus 80 ~~~~ 83 (84)
T PRK05828 80 KQKG 83 (84)
T ss_pred hccC
Confidence 8875
No 4
>PRK05350 acyl carrier protein; Provisional
Probab=99.81 E-value=4.5e-20 Score=124.23 Aligned_cols=79 Identities=24% Similarity=0.465 Sum_probs=75.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
|+++++.++|+++|++.+++++ ..|+++++|. +|||||+++++|+++||++|||++|++++..+.||+++++||.+++
T Consensus 2 m~~~~i~~~v~~ii~~~~~~~~-~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~ 80 (82)
T PRK05350 2 MTREEILERLRAILVELFEIDP-EDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLL 80 (82)
T ss_pred CCHHHHHHHHHHHHHHHhCCCH-HHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHh
Confidence 7899999999999999999998 6999999986 9999999999999999999999999999999999999999999887
Q ss_pred H
Q 032446 136 E 136 (140)
Q Consensus 136 ~ 136 (140)
+
T Consensus 81 ~ 81 (82)
T PRK05350 81 K 81 (82)
T ss_pred c
Confidence 5
No 5
>CHL00124 acpP acyl carrier protein; Validated
Probab=99.80 E-value=9.6e-20 Score=122.14 Aligned_cols=81 Identities=43% Similarity=0.695 Sum_probs=76.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
|+++++.++|++++++.+++++ +.++++++|. +|||||+++++|++.+|++|||++|++++..+.|++++++||.+++
T Consensus 1 M~~~~i~~~l~~ii~~~~~~~~-~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 79 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLGIEK-SEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKI 79 (82)
T ss_pred CCHHHHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHh
Confidence 7889999999999999999988 5899999998 5999999999999999999999999999999999999999999998
Q ss_pred Hhh
Q 032446 136 EKK 138 (140)
Q Consensus 136 ~~k 138 (140)
++|
T Consensus 80 ~~~ 82 (82)
T CHL00124 80 NKK 82 (82)
T ss_pred ccC
Confidence 764
No 6
>PRK07639 acyl carrier protein; Provisional
Probab=99.80 E-value=2.2e-19 Score=122.41 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=75.4
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhCCccCcccc--ccCCcHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENS--QNITTVQEAADLIEK 133 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefgI~i~~~~l--~~~~TV~dl~~~I~~ 133 (140)
|+++++.++|+++|++++++++.+.++++++|. +||+||+++++|+++||++|||+||++++ .++.||+++++||.+
T Consensus 1 M~~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~ 80 (86)
T PRK07639 1 MRREALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEE 80 (86)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHH
Confidence 788999999999999999987535899999998 89999999999999999999999999987 699999999999999
Q ss_pred HHHhh
Q 032446 134 LVEKK 138 (140)
Q Consensus 134 ~~~~k 138 (140)
+.+++
T Consensus 81 ~~~~~ 85 (86)
T PRK07639 81 LQPLQ 85 (86)
T ss_pred hhccc
Confidence 87654
No 7
>PRK05883 acyl carrier protein; Validated
Probab=99.79 E-value=3.3e-19 Score=122.81 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=76.3
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHH
Q 032446 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 56 ~m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
++++.++.++|+++|++.+++++ ..|+++++|. +||||||+++++++.||++|||+|+++++..+.||+++++||..+
T Consensus 9 ~~~~~~I~~~l~~iia~~l~v~~-~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~ 87 (91)
T PRK05883 9 TSSPSTVSATLLSILRDDLNVDL-TRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAK 87 (91)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCh-hhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 67899999999999999999998 6999999996 899999999999999999999999999999999999999999987
Q ss_pred HH
Q 032446 135 VE 136 (140)
Q Consensus 135 ~~ 136 (140)
+.
T Consensus 88 ~~ 89 (91)
T PRK05883 88 VR 89 (91)
T ss_pred cc
Confidence 64
No 8
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=99.79 E-value=2.8e-19 Score=120.99 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHHHh
Q 032446 61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVEK 137 (140)
Q Consensus 61 ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~~~ 137 (140)
++.+++++++++++++++ +.|+++++|. +||||||++++|+++||++|||+||++++.++.||+++++||.++++.
T Consensus 4 ~i~~~v~~iiae~l~v~~-~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~~~ 80 (82)
T PRK08172 4 DIEARVKKVITSCIAVDV-DSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSLES 80 (82)
T ss_pred cHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHHhc
Confidence 889999999999999998 6999999996 999999999999999999999999999999999999999999998754
No 9
>PRK12449 acyl carrier protein; Provisional
Probab=99.79 E-value=4.4e-19 Score=118.41 Aligned_cols=78 Identities=18% Similarity=0.464 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
|+++++.++|++++++.+++++ ..++++++|. +|||||+++++|++++|++|||.+|++++.++.||+++++||.+++
T Consensus 1 m~~~~i~~~l~~il~~~~~~~~-~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 79 (80)
T PRK12449 1 MTREEIFERLINLIQKQRSYLS-LAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQRL 79 (80)
T ss_pred CCHHHHHHHHHHHHHHHhCCCc-cccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHhc
Confidence 6789999999999999999988 5899999996 9999999999999999999999999999999999999999998764
No 10
>PTZ00171 acyl carrier protein; Provisional
Probab=99.77 E-value=1.3e-18 Score=129.61 Aligned_cols=85 Identities=34% Similarity=0.524 Sum_probs=79.7
Q ss_pred ccccCChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHH
Q 032446 53 CVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLI 131 (140)
Q Consensus 53 ~~~~m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I 131 (140)
+.+.|+++++.++|++++++.+++++ +.|+++++|. |||||||+++||+++||++|||+||++++.++.||+++++||
T Consensus 62 ~~~~~~~~~v~~~l~eiiae~l~vd~-~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V 140 (148)
T PTZ00171 62 KQYLLSKEDVLTRVKKVVKNFEKVDA-SKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYI 140 (148)
T ss_pred cccccCHHHHHHHHHHHHHHHhCCCH-hhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHH
Confidence 34568999999999999999999988 6899999997 999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 032446 132 EKLVEKK 138 (140)
Q Consensus 132 ~~~~~~k 138 (140)
.++...|
T Consensus 141 ~~~~~~~ 147 (148)
T PTZ00171 141 EQNNMAK 147 (148)
T ss_pred HHHHhcc
Confidence 9988765
No 11
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=99.73 E-value=6.8e-18 Score=111.89 Aligned_cols=74 Identities=46% Similarity=0.701 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHH
Q 032446 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 60 ~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
+++.++|++++++.+++++ ..++++++|. +|||||+++++|++.+|++|||++|++++.++.||+++++||.++
T Consensus 2 ~~i~~~l~~il~~~~~~~~-~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 76 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDE-DQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEEN 76 (77)
T ss_pred hHHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhc
Confidence 4789999999999999988 6899999996 899999999999999999999999999999999999999999864
No 12
>PRK06508 acyl carrier protein; Provisional
Probab=99.73 E-value=7.6e-18 Score=116.55 Aligned_cols=80 Identities=33% Similarity=0.494 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhCCccCccccc-----------cCCcHHHH
Q 032446 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQ-----------NITTVQEA 127 (140)
Q Consensus 60 ~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefgI~i~~~~l~-----------~~~TV~dl 127 (140)
..++++|+++|++.+++++ +.|++++++. +||||||++++|++.||++|||+||++++. .+.|++++
T Consensus 2 ~~i~ekv~~Ilae~~~vd~-~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~~~~~~~~~l~~~ 80 (93)
T PRK06508 2 SSTFDKVADIIAETSDIPR-DTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGKVPTEEYFVLKNL 80 (93)
T ss_pred hHHHHHHHHHHHHHhCCCH-HHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccccccchHHHHHHH
Confidence 3688999999999999998 6999999997 999999999999999999999999999864 55588999
Q ss_pred HHHHHHHHHhhcC
Q 032446 128 ADLIEKLVEKKAA 140 (140)
Q Consensus 128 ~~~I~~~~~~k~a 140 (140)
+.+|.+.+++|+|
T Consensus 81 ~~~i~~~~~~~~~ 93 (93)
T PRK06508 81 CAKIDELVAAKAA 93 (93)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999876
No 13
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=1.5e-17 Score=111.39 Aligned_cols=76 Identities=45% Similarity=0.686 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHH
Q 032446 59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 59 ~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
.+.+.++|++++.+.++.++ ..+++++.|. |||+|||+++||++.||++|||++|++++.++.||+++++||.++.
T Consensus 3 ~~~~~~~i~~ii~e~l~~~~-~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~~ 79 (80)
T COG0236 3 MEAIEERVKDIIAEQLGVDE-EEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEELL 79 (80)
T ss_pred hHHHHHHHHHHHHHHhCCch-hhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHhc
Confidence 45689999999999999986 6899999998 7999999999999999999999999999999999999999998764
No 14
>PRK09184 acyl carrier protein; Provisional
Probab=99.69 E-value=7e-17 Score=110.88 Aligned_cols=77 Identities=17% Similarity=0.393 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHhCC---CCCCCCCCCCCcc--ccCCChhhHHHHHHHHHHHhCCccCcccc---ccCCcHHHHHHH
Q 032446 59 KPETVQKVCEIVRRQLAL---PAETELTSESKFS--ALGADSLDTVEIVMSLEEEFGIGVEEENS---QNITTVQEAADL 130 (140)
Q Consensus 59 ~~ei~~~v~~ii~e~l~i---~~~~~I~~d~~l~--dLGlDSLd~vELv~~lEeefgI~i~~~~l---~~~~TV~dl~~~ 130 (140)
-+++.++|+++|.+.+++ ++ ++|+++++|+ +||+|||++++|++.+|++|||+|++++. ..++||+++++|
T Consensus 4 ~~~l~~~l~~~I~e~l~~~~i~~-~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~ 82 (89)
T PRK09184 4 MTALERELAELIVEELNLEDVQP-ESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAY 82 (89)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCH-HHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHH
Confidence 357899999999999985 66 6999999984 79999999999999999999999987654 458999999999
Q ss_pred HHHHHH
Q 032446 131 IEKLVE 136 (140)
Q Consensus 131 I~~~~~ 136 (140)
|.++..
T Consensus 83 I~~~~~ 88 (89)
T PRK09184 83 VAAHRT 88 (89)
T ss_pred HHHhhc
Confidence 988653
No 15
>PRK07081 acyl carrier protein; Provisional
Probab=99.67 E-value=1.4e-16 Score=107.84 Aligned_cols=77 Identities=18% Similarity=0.408 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhCC--CCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccc--cCCcHHHHHHHHHHHHHhh
Q 032446 63 VQKVCEIVRRQLAL--PAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQ--NITTVQEAADLIEKLVEKK 138 (140)
Q Consensus 63 ~~~v~~ii~e~l~i--~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~--~~~TV~dl~~~I~~~~~~k 138 (140)
.++|+++|.+.++. ++ +.++++++|.++|+||+++++|++.||++|||+||++++. ++.||++++++|.++++++
T Consensus 2 ~~~i~~ii~~~~~~~~~~-~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~~~ 80 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPI-DSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQDAE 80 (83)
T ss_pred hHHHHHHHHHHHcCCCCH-HhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHhhh
Confidence 57899999998555 44 5899999999999999999999999999999999999985 5999999999999998876
Q ss_pred cC
Q 032446 139 AA 140 (140)
Q Consensus 139 ~a 140 (140)
++
T Consensus 81 ~~ 82 (83)
T PRK07081 81 KS 82 (83)
T ss_pred cc
Confidence 53
No 16
>PRK00982 acpP acyl carrier protein; Provisional
Probab=99.66 E-value=2.5e-16 Score=104.35 Aligned_cols=74 Identities=51% Similarity=0.748 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCc-cccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHH
Q 032446 61 ETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 61 ei~~~v~~ii~e~l~i~~~~~I~~d~~l-~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
++.++|++++++.+++++ ..++++++| .++|+||+++++|+..+|++||+++|++++.++.|+++++++|.++.
T Consensus 3 ~i~~~l~~~l~~~l~~~~-~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 77 (78)
T PRK00982 3 EIFEKVKKIIVEQLGVDE-EEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQ 77 (78)
T ss_pred HHHHHHHHHHHHHHCCCH-HHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHhc
Confidence 588999999999999987 689999999 59999999999999999999999999999999999999999998753
No 17
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.60 E-value=4.3e-15 Score=94.98 Aligned_cols=67 Identities=34% Similarity=0.587 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHH
Q 032446 64 QKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLI 131 (140)
Q Consensus 64 ~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I 131 (140)
++|++++++.+++++ .+++++++|.++|+||++.++++..+|++||++++..++.+.+|+++++++|
T Consensus 1 e~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDP-EEIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSG-GCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCH-hhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 578999999999887 6899999999999999999999999999999999999999999999999986
No 18
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=99.57 E-value=6.4e-15 Score=98.82 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCccccC-CChhhHHHHHHHHHHHhCCccCcccccc--CCcHHHHHHHHHHH
Q 032446 61 ETVQKVCEIVRRQLALPAETELTSESKFSALG-ADSLDTVEIVMSLEEEFGIGVEEENSQN--ITTVQEAADLIEKL 134 (140)
Q Consensus 61 ei~~~v~~ii~e~l~i~~~~~I~~d~~l~dLG-lDSLd~vELv~~lEeefgI~i~~~~l~~--~~TV~dl~~~I~~~ 134 (140)
++.++|+++|.+.++.+. ..++++++|.+.| +||+++++|++.||++|||+||++++.. +.||+++++||+++
T Consensus 2 ~i~~~I~~iL~~~~~~~~-~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~l 77 (78)
T PRK05087 2 DFKEQVLDILEELTGEDI-VSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEEL 77 (78)
T ss_pred cHHHHHHHHHHHHhCCCh-hccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHHc
Confidence 478899999999998876 4789999999655 8999999999999999999999999864 99999999999875
No 19
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=99.34 E-value=1.4e-12 Score=86.50 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCccccCC-ChhhHHHHHHHHHHHhCCccCcccc--ccCCcHHHHHHHHH
Q 032446 64 QKVCEIVRRQLALPAETELTSESKFSALGA-DSLDTVEIVMSLEEEFGIGVEEENS--QNITTVQEAADLIE 132 (140)
Q Consensus 64 ~~v~~ii~e~l~i~~~~~I~~d~~l~dLGl-DSLd~vELv~~lEeefgI~i~~~~l--~~~~TV~dl~~~I~ 132 (140)
++|++++.+..+.+. ....++++|++.|+ ||++.|+|+.+||++|||++|++++ .++.|++.++++|+
T Consensus 2 e~i~eIL~~i~~~~~-~~~~~d~~L~~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~~~v~ 72 (73)
T TIGR01688 2 NGVLDILAEVTGSDD-VKENPDLELFEEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLE 72 (73)
T ss_pred hHHHHHHHHHhcCcc-cccCccHHHHHccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHHHHHh
Confidence 578899999887654 35689999999996 9999999999999999999999997 59999999999886
No 20
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=99.31 E-value=6.7e-12 Score=85.53 Aligned_cols=76 Identities=34% Similarity=0.488 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCcc------ccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHH
Q 032446 60 PETVQKVCEIVRRQLALPAETELTSESKFS------ALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEK 133 (140)
Q Consensus 60 ~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~------dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~ 133 (140)
..+.++|..++++++.-.. ++++.++|. ++-|||||.||+++.+|++|+|.||++...+++|++++++||.+
T Consensus 9 nav~~~i~g~~kkyl~~~~--~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V~IpDE~aDN~~tvqeIadfvv~ 86 (96)
T PF14573_consen 9 NAVTEYILGMLKKYLSEGE--EITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDVTIPDETADNIKTVQEIADFVVQ 86 (96)
T ss_dssp HHHHHHHHHHHHTTB-TT------TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT----HHHHTT--SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC--ccChhhhhHHhccccccccchhhhHHHHHhHHHHcCcccCccccchhhHHHHHHHHHHH
Confidence 4677889999998886553 688888875 46799999999999999999999999999999999999999987
Q ss_pred HHHh
Q 032446 134 LVEK 137 (140)
Q Consensus 134 ~~~~ 137 (140)
..+.
T Consensus 87 ~r~~ 90 (96)
T PF14573_consen 87 ERQS 90 (96)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 6543
No 21
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=98.88 E-value=1.4e-08 Score=65.20 Aligned_cols=74 Identities=24% Similarity=0.244 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHH
Q 032446 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 61 ei~~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
.+.+.+...+...++......++.+.+|.++|+||+..+++...++++||++++..++....|+..+++++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~ 85 (86)
T smart00823 12 LLLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE 85 (86)
T ss_pred HHHHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence 45677888888888877632358999999999999999999999999999999999998899999999998764
No 22
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.76 E-value=1.2e-08 Score=101.71 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhC--CccCccccccCCcHHHHHHHHHHH
Q 032446 58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFG--IGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 58 ~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefg--I~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
+..++.++|+++++++++++. +.++++.+|. |||+||++.+||++.+|++|+ ++++++++.+++|++++++||..+
T Consensus 1304 ~~~~v~~~vl~vvae~tgyp~-e~L~~d~~le~DLGiDSI~~vEil~~le~~f~~~~~i~~e~l~~l~Tl~div~~i~~~ 1382 (2582)
T TIGR02813 1304 DLIQIQNVMLEVVADKTGYPT-EMLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELSPEDLAECRTLGEIVSYMQSK 1382 (2582)
T ss_pred cHHHHHHHHHHHHHHHhCCCH-HHcCcccCchhhcCCCHHHHHHHHHHHHHhcCCcCCCChhHhhhcccHHHHHHHHhhc
Confidence 356899999999999999998 6999999999 999999999999999999999 889999999999999999999865
Q ss_pred H
Q 032446 135 V 135 (140)
Q Consensus 135 ~ 135 (140)
.
T Consensus 1383 ~ 1383 (2582)
T TIGR02813 1383 V 1383 (2582)
T ss_pred c
Confidence 4
No 23
>PRK06060 acyl-CoA synthetase; Validated
Probab=98.59 E-value=1.7e-07 Score=83.16 Aligned_cols=75 Identities=24% Similarity=0.320 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHHH
Q 032446 62 TVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVE 136 (140)
Q Consensus 62 i~~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~~ 136 (140)
+.+.|+..+++.++.+....|+++.+|++||+|||+.++|...|++.||+++|...+.+..|+.++++++.+.+.
T Consensus 546 ~~~~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~~ 620 (705)
T PRK06060 546 VVDAVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAELA 620 (705)
T ss_pred HHHHHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHhc
Confidence 456788889999998643579999999999999999999999999999999999999999999999999988764
No 24
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.29 E-value=1.8e-06 Score=81.77 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHH
Q 032446 59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 59 ~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
..++.+.+.+++.+.++.+. ..++++.+|+++|.|||..++++..|+++||+.++..++.+..|+.+++++|....
T Consensus 846 ~~~~~~~l~~~~~~vl~~~~-~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~ 921 (1389)
T TIGR03443 846 FTETEREIRDLWLELLPNRP-ATISPDDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLK 921 (1389)
T ss_pred CCHHHHHHHHHHHHHhCCCc-cccCcCcchhhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhh
Confidence 34678889999999999876 57999999999999999999999999999999999999999999999999997654
No 25
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.26 E-value=2.8e-06 Score=79.61 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=68.7
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
....++.+.+.+++++.++++ .++.+.+|+++|.|||..++|+..|++.||++++..++....|+.+++++|.+.
T Consensus 974 ~~~~~~e~~l~~~~~~~l~~~---~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~ 1048 (1296)
T PRK10252 974 APKTGTETIIAAAFSSLLGCD---VVDADADFFALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAE 1048 (1296)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---CCCCCcCHHHcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhcc
Confidence 345678889999999999985 588999999999999999999999999999999999999999999999999764
No 26
>PRK12467 peptide synthase; Provisional
Probab=98.18 E-value=4.5e-06 Score=86.39 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=68.7
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEK 133 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~ 133 (140)
....++++.+.+++++.|+++ .|..+.+|++||.|||..++|+..++++||++++..++.+..|+.++++++..
T Consensus 3601 ~p~~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3601 APRSEVEQQLAAIWADVLGVE---QVGVTDNFFELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---CCCCCcchhcccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 456789999999999999985 48899999999999999999999999999999999999999999999999965
No 27
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.97 E-value=1.1e-05 Score=53.12 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=59.2
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHHH
Q 032446 66 VCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVE 136 (140)
Q Consensus 66 v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~~ 136 (140)
+++.+.+.++..+ ++++++.+|.+.|+||+-+|.++....++ |..|+..++...+|++.-.+++.....
T Consensus 3 Lr~~~~~Ll~e~~-~~l~dqeNLi~~GLDSiR~M~L~~~wR~~-G~~i~F~~La~~PTl~aW~qLl~~~~~ 71 (74)
T COG3433 3 LREQIAELLGESV-EELDDQENLIDYGLDSIRMMALLERWRKR-GADIDFAQLAANPTLAAWWQLLSTRSK 71 (74)
T ss_pred HHHHHHHHHcCCh-hhcCchhhHHHhchhHHHHHHHHHHHHHc-CCcccHHHHHhCccHHHHHHHHHhccc
Confidence 4566666677665 58999999999999999999999999877 999999999999999999998876543
No 28
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=97.94 E-value=1e-05 Score=81.44 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhC--CccCccccccCCcHHHHHHHHHHH
Q 032446 58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVEIVMSLEEEFG--IGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 58 ~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefg--I~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
+..++.+.+.++++++.|.+. +.++++.++. |||+||+..+|++..++++|+ .+++++++..++|++++++|+...
T Consensus 1208 ~~~~~~~~~l~vvae~tgyp~-e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~~~~e~~pe~l~~~rTl~~iv~~~~~~ 1286 (2582)
T TIGR02813 1208 NDSAIQQVMMEVVAEKTGYPT-EMLELEMDMEADLGIDSIKRVEILGSVQEIINDLPELNPEDLAELRTLGEIVNYMQSK 1286 (2582)
T ss_pred chhHHHHHHHHHHHhhccCCh-HhcccccccccccCcchhhhHHhhhhhhhhccCCCCCChhhhcccccHHHHHHhhccc
Confidence 456788999999999999998 6899999999 999999999999999999998 778899999999999999998543
No 29
>PRK05691 peptide synthase; Validated
Probab=97.92 E-value=3.5e-05 Score=80.50 Aligned_cols=77 Identities=18% Similarity=0.346 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLVE 136 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~~ 136 (140)
.+..++.+.|+++++++|+++ .|..+.+|++||.|||..++|+..++++||+.++..++....|+.++++++.....
T Consensus 582 ~~~~~~e~~l~~~~~~vL~~~---~i~~~~~ff~lGgdSL~a~~l~~~l~~~~g~~l~v~~i~~~~ti~~la~~l~~~~~ 658 (4334)
T PRK05691 582 ASGDELQARIAAIWCEQLKVE---QVAADDHFFLLGGNSIAATQVVARLRDELGIDLNLRQLFEAPTLAAFSAAVARQLA 658 (4334)
T ss_pred CCcchHHHHHHHHHHHHhCCC---CCCcCCchhhcccchHHHHHHHHHHHHHhCCcCchhhhhcccchHHHHHHHHHhhc
Confidence 345578889999999999974 58999999999999999999999999999999999999999999999999976543
No 30
>PRK05691 peptide synthase; Validated
Probab=97.89 E-value=2.9e-05 Score=81.05 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
..+.+++.+|++++++.|+++ .|..+.+|++||.|||..+.|+..+++.||++++..++...+|+.+++++|...
T Consensus 4237 ~p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~ 4311 (4334)
T PRK05691 4237 APRNELEQTLATIWADVLKVE---RVGVHDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEGL 4311 (4334)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---cCCCCCchhhcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhhh
Confidence 467789999999999999974 588999999999999999999999999999999999999999999999999753
No 31
>PRK12467 peptide synthase; Provisional
Probab=97.85 E-value=3.6e-05 Score=79.98 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=69.0
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
....++.+.|.+++++.|+++ .|..+.+|++||.|||..++++..++++||+.++..++.+..|+.++++++...
T Consensus 1026 ~p~~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~ 1100 (3956)
T PRK12467 1026 APQTELEKRLAAIWADVLKVE---RVGLTDNFFELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQ 1100 (3956)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---CCCCCCCchhccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhh
Confidence 455688899999999999974 588999999999999999999999999999999999999999999999998754
No 32
>PRK12316 peptide synthase; Provisional
Probab=97.84 E-value=3.8e-05 Score=81.20 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=68.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKL 134 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~ 134 (140)
....++..++.+++++.|+++ .|..+.+|++||.|||..+.|+..++++||++++..++....|+++++++|...
T Consensus 5068 ~~~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~~ 5142 (5163)
T PRK12316 5068 APRSELEQQVAAIWAEVLQLE---RVGLDDNFFELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAAA 5142 (5163)
T ss_pred CCCcHHHHHHHHHHHHHhCCC---CCCCCCChhhccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHhc
Confidence 355678899999999999975 588999999999999999999999999999999999999999999999999653
No 33
>PRK12316 peptide synthase; Provisional
Probab=97.74 E-value=7.2e-05 Score=79.16 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=69.0
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHH
Q 032446 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
....++.+++.+++++.++++ .|..+.+|++||.|||..++|+..++++||+.++..++.+..|+.+++..+....
T Consensus 2512 ~p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~~~ 2587 (5163)
T PRK12316 2512 APQEGLEQRLAAIWQAVLKVE---QVGLDDHFFELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESGQ 2587 (5163)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---ccCCCCchhhhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhhhh
Confidence 456688899999999999985 5889999999999999999999999999999999999999999999999886543
No 34
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=97.40 E-value=0.00056 Score=48.37 Aligned_cols=59 Identities=19% Similarity=0.329 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhCCC---CCCCCCCCCCcc-ccCCChhhHHHHHHHHHHHhCCccCcccc
Q 032446 60 PETVQKVCEIVRRQLALP---AETELTSESKFS-ALGADSLDTVEIVMSLEEEFGIGVEEENS 118 (140)
Q Consensus 60 ~ei~~~v~~ii~e~l~i~---~~~~I~~d~~l~-dLGlDSLd~vELv~~lEeefgI~i~~~~l 118 (140)
+++.++|.+.|.+..+.. ....++++++|. |||++--+..+++....++|+|++..=++
T Consensus 2 ~~i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~~~f~~ 64 (111)
T PF07377_consen 2 DDIEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDLSDFDF 64 (111)
T ss_pred chHHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCcCccCH
Confidence 578999999999999873 226899999998 99999999999999999999998765443
No 35
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=96.79 E-value=0.00062 Score=64.95 Aligned_cols=54 Identities=26% Similarity=0.412 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccc
Q 032446 66 VCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQ 119 (140)
Q Consensus 66 v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~ 119 (140)
+...|+.++|+.+-..++.+++|.|||+|||+-+||--.||.+|++.+...++.
T Consensus 2009 LiatiA~IlGlrD~~~vn~~asLaDLGlDSLMsvEikQtLER~~dlVLS~qEiR 2062 (2376)
T KOG1202|consen 2009 LIATIAHILGLRDLKAVNDDASLADLGLDSLMSVEIKQTLEREFDLVLSAQEIR 2062 (2376)
T ss_pred HHHHHHHHhcchhHhhccCCCchhhccchhhhhHHHHHHHhhhhceeeeHHHHH
Confidence 677888889986546899999999999999999999999999999998876653
No 36
>PF10501 Ribosomal_L50: Ribosomal subunit 39S; InterPro: IPR018305 This entry represents the L50 protein from the mitochondrial 39S ribosomal subunit. L50 appears to be a secondary RNA-binding protein []. The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units []. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [].; GO: 0005739 mitochondrion
Probab=95.51 E-value=0.12 Score=36.53 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCC-CCCCCccccCC-ChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHH
Q 032446 58 AKPETVQKVCEIVRRQLALPAETEL-TSESKFSALGA-DSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEK 133 (140)
Q Consensus 58 ~~~ei~~~v~~ii~e~l~i~~~~~I-~~d~~l~dLGl-DSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~ 133 (140)
+.+++.+.|.+..++.++.+. ... ..+..+.++-+ |--.-..++.++.+.+|..||+..+..+.|++++++++.+
T Consensus 5 ~~e~l~~~i~e~~~e~~~~~~-~~~~~~~~~~~~~~l~D~~~KF~~lKrl~~~tGh~ipD~~L~~~~T~~dl~~~~~~ 81 (112)
T PF10501_consen 5 PPEDLEEIIEESAKEVLGAEG-FGSQSWNNDWLDISLEDLQLKFAFLKRLQQLTGHRIPDSKLHSIHTVGDLLNFYEK 81 (112)
T ss_pred CHHHHHHHHHHHHHHHhcccc-cccccCCccccccccCCHHHHHHHHHHHHHHHCCCCCcHHHHhcCCHHHHHHHHHH
Confidence 456788889999998888653 122 34455555554 4446688999999999999999999999999999999955
No 37
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=94.94 E-value=0.089 Score=44.33 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHHHHHhCCCC--------CCCCCCCCCcc--ccCCChhhHHHHHHHHHHHhCCcc--CccccccCCcH
Q 032446 57 SAKPETVQKVCEIVRRQLALPA--------ETELTSESKFS--ALGADSLDTVEIVMSLEEEFGIGV--EEENSQNITTV 124 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l~i~~--------~~~I~~d~~l~--dLGlDSLd~vELv~~lEeefgI~i--~~~~l~~~~TV 124 (140)
.+...+...+..+|...+.--. ...+..|..+. ++|+|||..++|+.++-+-|++.= -++-+..-+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (386)
T TIGR02372 3 LDAEAVGRLLVSLIAAEQQEGRVQHHQMPEARLLTADLRIDEETLGLDSLLRLSLVTAVAGFFHLSDTGTEDYLLVRRRI 82 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCcccCchhhhcccccccccccccccHHHHHHHHHHHHHHhcccccchhhhhhhhccH
Confidence 3566788888888888774211 12377888885 799999999999999999999942 22234566799
Q ss_pred HHHHHHHHHHH
Q 032446 125 QEAADLIEKLV 135 (140)
Q Consensus 125 ~dl~~~I~~~~ 135 (140)
++.+++|.+.-
T Consensus 83 ~~~~~~~~~~~ 93 (386)
T TIGR02372 83 GEWVDLIAHHS 93 (386)
T ss_pred HHHHHHHHhcC
Confidence 99999997554
No 38
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=91.88 E-value=0.4 Score=42.51 Aligned_cols=75 Identities=23% Similarity=0.282 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhC-CccCccccccCCcHHHHHHHHHHHHH
Q 032446 60 PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFG-IGVEEENSQNITTVQEAADLIEKLVE 136 (140)
Q Consensus 60 ~ei~~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefg-I~i~~~~l~~~~TV~dl~~~I~~~~~ 136 (140)
..+.++++.++...|..- .++..+++|++-|..|.|.+.|+-++.+.-| .+++.+++..-.|+++.++++.+++.
T Consensus 321 ~~t~~~~~~iw~~il~kv--~~v~~~tdff~sga~s~dv~rlveeik~~~~g~ele~~~iy~~~t~g~~i~~~ir~lr 396 (881)
T KOG2452|consen 321 LVTAEAVRSVWQRILPKV--LEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKLR 396 (881)
T ss_pred HHHHHHHHHHHHHhcchh--eeecccchHhhcCccchhHHHHHHHHHHhCCcceeccCceEeccchhhHHHHHHHHhc
Confidence 356788999988887643 2688999999999999999999999988876 88999998888999999999887764
No 39
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.42 E-value=1.4 Score=42.18 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCccccCCChhhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHH
Q 032446 64 QKVCEIVRRQLALPAETELTSESKFSALGADSLDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEK 133 (140)
Q Consensus 64 ~~v~~ii~e~l~i~~~~~I~~d~~l~dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~ 133 (140)
..+++.+-...+. ..++++++|+++|.||+..+-++-.+..++.++.|..-.....|+..+..-+..
T Consensus 601 ~~v~d~~l~~~~~---~~~s~d~~fF~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~ 667 (1032)
T KOG1178|consen 601 STVFDLWLSIGSL---AIVSPDSSFFQLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIR 667 (1032)
T ss_pred cchhhhhhhhcCc---cccCCCcchhhhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhh
Confidence 3344444444441 357899999999999999999999999999999999988888888887655543
No 40
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=63.66 E-value=41 Score=23.37 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhCCCC--------CCCCCCCCCcc-----ccCCChhhHHHHHHHHHHHhCCccCccccccCC
Q 032446 60 PETVQKVCEIVRRQLALPA--------ETELTSESKFS-----ALGADSLDTVEIVMSLEEEFGIGVEEENSQNIT 122 (140)
Q Consensus 60 ~ei~~~v~~ii~e~l~i~~--------~~~I~~d~~l~-----dLGlDSLd~vELv~~lEeefgI~i~~~~l~~~~ 122 (140)
.++..+++..+.+..|+.. -.+-++++++. .-|..-++++++...|++-||++|+--.-..+.
T Consensus 8 ~~~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~~~ll~~~~l~~~L~~llg~~VDL~t~~ai~ 83 (97)
T COG1669 8 KKILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPGKTLLDLVRLEDELSDLLGRKVDLVTKDAIH 83 (97)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCCccHHHHHHHHHHHHHHhCCeeeeecccccC
Confidence 3446777888887775432 12455666653 457899999999999999999998765443333
No 41
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=54.04 E-value=12 Score=22.69 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=15.8
Q ss_pred CCChhhHHHHHHHHHHHhCCccCc
Q 032446 92 GADSLDTVEIVMSLEEEFGIGVEE 115 (140)
Q Consensus 92 GlDSLd~vELv~~lEeefgI~i~~ 115 (140)
+++++..=.+...||++||+++.+
T Consensus 17 dl~~vT~k~vr~~Le~~~~~dL~~ 40 (54)
T PF08766_consen 17 DLDTVTKKQVREQLEERFGVDLSS 40 (54)
T ss_dssp -GGG--HHHHHHHHHHH-SS--SH
T ss_pred CHhHhhHHHHHHHHHHHHCCCcHH
Confidence 456888899999999999998874
No 42
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=47.33 E-value=43 Score=21.71 Aligned_cols=56 Identities=18% Similarity=0.339 Sum_probs=41.4
Q ss_pred cccCChHHHHHHHHHHHHHHhCCCCC--CCCCCCCCcc-ccCCChhhHHHHHHHHHHHh
Q 032446 54 VSCSAKPETVQKVCEIVRRQLALPAE--TELTSESKFS-ALGADSLDTVEIVMSLEEEF 109 (140)
Q Consensus 54 ~~~m~~~ei~~~v~~ii~e~l~i~~~--~~I~~d~~l~-dLGlDSLd~vELv~~lEeef 109 (140)
...+++.++...+.+.|++.-=.++. ..|..|..|. =+|.|.+.+.++...|...|
T Consensus 17 ~~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl 75 (77)
T smart00151 17 APEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKDRMDMFEMNKLLTPHL 75 (77)
T ss_pred CCcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCcCeecHHHHHHHHHHHc
Confidence 35688999999999999965333331 2477787777 46888888888888877654
No 43
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=44.34 E-value=27 Score=22.56 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=18.9
Q ss_pred HHHHHHHhCCccCccccccCCcHHHHHHHH
Q 032446 102 VMSLEEEFGIGVEEENSQNITTVQEAADLI 131 (140)
Q Consensus 102 v~~lEeefgI~i~~~~l~~~~TV~dl~~~I 131 (140)
+..+++.||+++|.+ +..|++.++-..
T Consensus 16 l~~l~~~~~~~l~~~---~~~Tl~G~i~~~ 42 (81)
T PF03471_consen 16 LDDLNELLGLDLPEE---DYDTLGGLILEQ 42 (81)
T ss_dssp HHHHHHHHTS-TTTT---TTSBHHHHHHHH
T ss_pred HHHHHHHHCcCCCcc---chhhHHHHHHHH
Confidence 356789999999985 455888875443
No 44
>PF00874 PRD: PRD domain; InterPro: IPR011608 Transcriptional antiterminators and activators containing phosphoenolpyruvate: sugar phosphotransferase system (PTS) regulation domains (PRDs) form a class of bacterial regulatory proteins whose activity is modulated by phosphorylation. These regulators stimulate the expression of genes and operons involved in carbohydrate metabolism. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria [, ] and are often characterised by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators, IPR004341 from INTERPRO) or DNA (for activators), and a duplicated PRD module which is phosphorylated on conserved histidines by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations are thought to modify the stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain [, , ]. PRDs are characterised by the presence of a duplicated regulatory module of ~100 residues that can be reversibly phosphorylated on histidyl residues by the PTS. PRDs in transcriptional antiterminators and activators are PTS regulatory targets that are (de)phosphorylated in response to the availability of carbon sources [, , , , ]. The PRD domain comprises one and often two highly conserved histidines. It forms a compact bundle comprising five helices (alpha1-alpha5). The core of the PRD module consists of two pairs of antiparallel helices making an angle of ~60 degrees. The first pair contains the antiparallel helices alpha1 and alpha4, while the second pair contains alpha2 and alpha5. The third helix (alpha3) is oriented perpendicularly to alpha5 at the periphery of the bundle. The helices are connected by loops of varying length [, , ].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1TLV_A 1H99_A 3GWH_A 3UFE_B 3RIO_A 3NUF_A.
Probab=34.43 E-value=31 Score=21.47 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhCCccCcccc
Q 032446 98 TVEIVMSLEEEFGIGVEEENS 118 (140)
Q Consensus 98 ~vELv~~lEeefgI~i~~~~l 118 (140)
.-++...+++.||++++++++
T Consensus 59 a~~~~~~l~~~~~i~~~~~Ei 79 (89)
T PF00874_consen 59 AKEICERLEKRYGITLPDDEI 79 (89)
T ss_dssp HHHHHHHHHHHHTS-S-HHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHH
Confidence 456888899999999999875
No 45
>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed
Probab=30.77 E-value=47 Score=24.05 Aligned_cols=20 Identities=40% Similarity=0.708 Sum_probs=16.7
Q ss_pred ChhhHHHHHHHHHHHhCCcc
Q 032446 94 DSLDTVEIVMSLEEEFGIGV 113 (140)
Q Consensus 94 DSLd~vELv~~lEeefgI~i 113 (140)
.=+...||+-.||++|||+-
T Consensus 16 tllE~~eLv~~lee~fgv~a 35 (123)
T PRK00157 16 TVLELSELVKALEEKFGVSA 35 (123)
T ss_pred CHHHHHHHHHHHHHHcCCCc
Confidence 34677899999999999973
No 46
>PLN00204 CP12 gene family protein; Provisional
Probab=30.42 E-value=91 Score=22.70 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=11.7
Q ss_pred CChHHHHHHHHHHHHHHh
Q 032446 57 SAKPETVQKVCEIVRRQL 74 (140)
Q Consensus 57 m~~~ei~~~v~~ii~e~l 74 (140)
++.+.+.++|.+-|++--
T Consensus 52 a~~~~L~e~Ie~aI~eAr 69 (126)
T PLN00204 52 AAPEGISEKVEKSIKEAE 69 (126)
T ss_pred cCCccHHHHHHHHHHHHH
Confidence 445567777777776643
No 47
>TIGR00855 L12 ribosomal protein L7/L12. THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.
Probab=29.43 E-value=50 Score=24.04 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=17.2
Q ss_pred CChhhHHHHHHHHHHHhCCcc
Q 032446 93 ADSLDTVEIVMSLEEEFGIGV 113 (140)
Q Consensus 93 lDSLd~vELv~~lEeefgI~i 113 (140)
+.=+...||+-.||++|||+-
T Consensus 16 LTllE~~eLv~~lee~fgV~a 36 (126)
T TIGR00855 16 MTVLELSELVKALEEKFGVSA 36 (126)
T ss_pred CCHHHHHHHHHHHHHhcCCCc
Confidence 334677899999999999973
No 48
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=29.40 E-value=33 Score=22.84 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=12.0
Q ss_pred HHHHHHHHHhCCccCccc
Q 032446 100 EIVMSLEEEFGIGVEEEN 117 (140)
Q Consensus 100 ELv~~lEeefgI~i~~~~ 117 (140)
+=+..+|+++|+.+|++-
T Consensus 5 ~~I~~~E~~lg~~LP~~y 22 (130)
T PF09346_consen 5 EEIQELEEKLGVRLPDDY 22 (130)
T ss_dssp HHHHHHHHHHTS---HHH
T ss_pred HHHHHHHHHhCCCCcHHH
Confidence 457889999999999863
No 49
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=27.20 E-value=50 Score=21.22 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.3
Q ss_pred HHHHHHHHHhCCccCccc
Q 032446 100 EIVMSLEEEFGIGVEEEN 117 (140)
Q Consensus 100 ELv~~lEeefgI~i~~~~ 117 (140)
+-+.++|+++|+++|.+-
T Consensus 5 ~~i~~~e~~lg~~LP~~y 22 (129)
T smart00860 5 EEIAELEKKLGIKLPEDY 22 (129)
T ss_pred HHHHHHHHHHCCCCCHHH
Confidence 567889999999999874
No 50
>PF13592 HTH_33: Winged helix-turn helix
Probab=26.97 E-value=39 Score=20.73 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCCccCccc
Q 032446 98 TVEIVMSLEEEFGIGVEEEN 117 (140)
Q Consensus 98 ~vELv~~lEeefgI~i~~~~ 117 (140)
.-+|...|+++|||.+....
T Consensus 7 ~~~i~~~I~~~fgv~ys~~~ 26 (60)
T PF13592_consen 7 LKEIAAYIEEEFGVKYSPSG 26 (60)
T ss_pred HHHHHHHHHHHHCCEEcHHH
Confidence 45788899999999886543
No 51
>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]
Probab=24.40 E-value=73 Score=23.16 Aligned_cols=17 Identities=47% Similarity=0.821 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHhCCc
Q 032446 96 LDTVEIVMSLEEEFGIG 112 (140)
Q Consensus 96 Ld~vELv~~lEeefgI~ 112 (140)
|.+.+|+-.+|+.|||.
T Consensus 18 lel~eLvk~~eekfgVs 34 (124)
T COG0222 18 LELSELVKALEEKFGVT 34 (124)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 55688999999999997
No 52
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=24.21 E-value=1.3e+02 Score=23.64 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCcc---ccCCChhhHHHHHHHHHHHhCC
Q 032446 61 ETVQKVCEIVRRQLALPAETELTSESKFS---ALGADSLDTVEIVMSLEEEFGI 111 (140)
Q Consensus 61 ei~~~v~~ii~e~l~i~~~~~I~~d~~l~---dLGlDSLd~vELv~~lEeefgI 111 (140)
.+..++.+.|.++- -+.+..++. .-|.||+.++-++..+.+++++
T Consensus 11 ~~~~~v~~~i~~~~------li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~ 58 (258)
T PRK10696 11 RLRRQVGQAIADFN------MIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPI 58 (258)
T ss_pred HHHHHHHHHHHHcC------CCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCC
Confidence 45555666655532 233333443 6799999999999988877654
No 53
>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.
Probab=23.53 E-value=56 Score=21.74 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=11.4
Q ss_pred HHHHHHHHHhCCccCcc
Q 032446 100 EIVMSLEEEFGIGVEEE 116 (140)
Q Consensus 100 ELv~~lEeefgI~i~~~ 116 (140)
+-+..+|+++|+++|.+
T Consensus 2 e~I~~~E~~Lg~~lP~~ 18 (120)
T PF14568_consen 2 EEIEEAEKKLGVKLPED 18 (120)
T ss_dssp HHHHHHHHHHTS---HH
T ss_pred hHHHHHHHHhCCCCCHH
Confidence 34678999999999976
No 54
>CHL00083 rpl12 ribosomal protein L12
Probab=23.45 E-value=74 Score=23.27 Aligned_cols=19 Identities=37% Similarity=0.714 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHhCCcc
Q 032446 95 SLDTVEIVMSLEEEFGIGV 113 (140)
Q Consensus 95 SLd~vELv~~lEeefgI~i 113 (140)
=+...||+..||++|||+-
T Consensus 17 llE~~eLv~~le~~fgv~~ 35 (131)
T CHL00083 17 LLEAAELVKQIEETFGVDA 35 (131)
T ss_pred HHHHHHHHHHHHHHcCCCc
Confidence 4677899999999999964
No 55
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=22.22 E-value=98 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=23.5
Q ss_pred cccC--CChhhHHHHHHHHHHHhCCccCc
Q 032446 89 SALG--ADSLDTVEIVMSLEEEFGIGVEE 115 (140)
Q Consensus 89 ~dLG--lDSLd~vELv~~lEeefgI~i~~ 115 (140)
.|.| .|+--.+.|+.+|-+.||++||+
T Consensus 465 Ld~GqCnD~~r~~~la~aLae~lgvdI~d 493 (576)
T COG1151 465 LDFGQCNDIYRIIVLALALAEVLGLDIND 493 (576)
T ss_pred ccccccchHHHHHHHHHHHHHHhCCCCcc
Confidence 3666 79999999999999999997776
No 56
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=22.00 E-value=51 Score=20.76 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCC--------CCCCCCCCccccCC
Q 032446 58 AKPETVQKVCEIVRRQLALPAE--------TELTSESKFSALGA 93 (140)
Q Consensus 58 ~~~ei~~~v~~ii~e~l~i~~~--------~~I~~d~~l~dLGl 93 (140)
...++...|++.|.+..|++++ ..+.++..|.++|+
T Consensus 18 ~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i 61 (74)
T cd01807 18 SEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSI 61 (74)
T ss_pred CCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCC
Confidence 4567888999999998888762 24667777777776
No 57
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.90 E-value=2.2e+02 Score=21.60 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHhCCccCccccccCCcHHHHHHHHHHHH
Q 032446 96 LDTVEIVMSLEEEFGIGVEEENSQNITTVQEAADLIEKLV 135 (140)
Q Consensus 96 Ld~vELv~~lEeefgI~i~~~~l~~~~TV~dl~~~I~~~~ 135 (140)
++.++=...+=++|||..+..-....+|.+.+.+|+++..
T Consensus 15 ~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~ 54 (162)
T COG0041 15 WDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAE 54 (162)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHH
Confidence 5677777888899999998888899999999999997654
No 58
>PF06755 DUF1219: Protein of unknown function (DUF1219); InterPro: IPR009610 This family consists of several hypothetical proteins which seem to be specific to the enterobacteria Escherichia coli and Shigella flexneri. Family members are often known as YeeV proteins and are around 125 residues in length. The function of this family is unknown.
Probab=20.73 E-value=83 Score=22.51 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=13.0
Q ss_pred ccCChHHHHHHHHH-HHHHHhCCCC
Q 032446 55 SCSAKPETVQKVCE-IVRRQLALPA 78 (140)
Q Consensus 55 ~~m~~~ei~~~v~~-ii~e~l~i~~ 78 (140)
.|+++-++.+++.. ++.+.+|+.-
T Consensus 14 ~~~spV~vWQ~llt~LL~~HYGLtL 38 (114)
T PF06755_consen 14 PCPSPVEVWQQLLTYLLEQHYGLTL 38 (114)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCcc
Confidence 45566666666444 4445566543
Done!